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This page was generated on 2026-01-21 15:46 -0500 (Wed, 21 Jan 2026).

HostnameOSArch (*)R versionInstalled pkgs
teran2Linux (Ubuntu 24.04.3 LTS)x86_64R Under development (unstable) (2026-01-12 r89300) -- "Unsuffered Consequences" 925
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Package 45/230HostnameOS / ArchINSTALLBUILDCHECK
bluster 1.21.0  (landing page)
Aaron Lun
Snapshot Date: 2026-01-21 12:00 -0500 (Wed, 21 Jan 2026)
git_url: https://git.bioconductor.org/packages/bluster
git_branch: devel
git_last_commit: bd99aa0
git_last_commit_date: 2025-10-29 11:00:44 -0500 (Wed, 29 Oct 2025)
teran2Linux (Ubuntu 24.04.3 LTS) / x86_64  OK    ERROR  skipped

BUILD results for bluster on teran2

To the developers/maintainers of the bluster package:
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: bluster
Version: 1.21.0
Command: /home/rapidbuild/bbs-3.23-bioc-rapid/R/bin/R CMD build --keep-empty-dirs --no-resave-data bluster
StartedAt: 2026-01-21 12:31:50 -0500 (Wed, 21 Jan 2026)
EndedAt: 2026-01-21 12:33:04 -0500 (Wed, 21 Jan 2026)
EllapsedTime: 74.2 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
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### Running command:
###
###   /home/rapidbuild/bbs-3.23-bioc-rapid/R/bin/R CMD build --keep-empty-dirs --no-resave-data bluster
###
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* checking for file ‘bluster/DESCRIPTION’ ... OK
* preparing ‘bluster’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package (it is needed to build vignettes)
* creating vignettes ... ERROR
--- re-building ‘clusterRows.Rmd’ using rmarkdown

Quitting from clusterRows.Rmd:178-181 [unnamed-chunk-14]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `findNeighbors()`:
! argument "X" is missing, with no default
---
Backtrace:
    ▆
 1. ├─bluster::clusterRows(mat, DbscanParam())
 2. └─bluster::clusterRows(mat, DbscanParam())
 3.   └─bluster:::.DBSCAN(...)
 4.     └─BiocNeighbors::findNeighbors(...)
 5.       └─methods::is(X, "BiocNeighborIndex")
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'clusterRows.Rmd' failed with diagnostics:
argument "X" is missing, with no default
--- failed re-building ‘clusterRows.Rmd’

--- re-building ‘diagnostics.Rmd’ using rmarkdown
--- finished re-building ‘diagnostics.Rmd’

SUMMARY: processing the following file failed:
  ‘clusterRows.Rmd’

Error: Vignette re-building failed.
Execution halted