Rapid builds (Linux only) of a subset of BioC 3.23<BR>Report updated every 6 hours

Hostname	OS	Arch (*)	R version	Installed pkgs
teran2	Linux (Ubuntu 24.04.3 LTS)	x86_64	R Under development (unstable) (2025-10-28 r88973) -- "Unsuffered Consequences"	926
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BUILD results for GOstats on teran2

To the developers/maintainers of the GOstats package:
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results

Summary

Package: GOstats

Version: 2.77.0

Command: /home/rapidbuild/bbs-3.23-bioc-rapid/R/bin/R CMD build --keep-empty-dirs --no-resave-data GOstats

StartedAt: 2025-12-11 12:38:19 -0500 (Thu, 11 Dec 2025)

EndedAt: 2025-12-11 12:41:48 -0500 (Thu, 11 Dec 2025)

EllapsedTime: 209.0 seconds

RetCode: 1

Status: ERROR

PackageFile: None

PackageFileSize: NA

Command output

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### Running command:
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###   /home/rapidbuild/bbs-3.23-bioc-rapid/R/bin/R CMD build --keep-empty-dirs --no-resave-data GOstats
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* checking for file ‘GOstats/DESCRIPTION’ ... OK
* preparing ‘GOstats’:
* checking DESCRIPTION meta-information ... OK
* installing the package (it is needed to build vignettes)
* creating vignettes ... ERROR
--- re-building ‘GOstatsForUnsupportedOrganisms.Rmd’ using rmarkdown
Warning: call dbDisconnect() when finished working with a connection
Error: processing vignette 'GOstatsForUnsupportedOrganisms.Rmd' failed with diagnostics:
Error writing to connection:  No space left on device
--- failed re-building ‘GOstatsForUnsupportedOrganisms.Rmd’

--- re-building ‘GOstatsHyperG.Rmd’ using rmarkdown
Error: processing vignette 'GOstatsHyperG.Rmd' failed with diagnostics:
Error writing to connection:  No space left on device
--- failed re-building ‘GOstatsHyperG.Rmd’

--- re-building ‘GOvis.Rmd’ using rmarkdown
Warning in close.connection(con) :
  Problem closing connection:  No space left on device
Warning in close.connection(con) :
  Problem closing connection:  No space left on device
Warning in close.connection(con) :
  Problem closing connection:  No space left on device
Warning in doTryCatch(return(expr), name, parentenv, handler) :
  "nodeAttrs" is not a graphical parameter
Warning in doTryCatch(return(expr), name, parentenv, handler) :
  zero-length arrow is of indeterminate angle and so skipped
Warning in doTryCatch(return(expr), name, parentenv, handler) :
  zero-length arrow is of indeterminate angle and so skipped
Warning in doTryCatch(return(expr), name, parentenv, handler) :
  zero-length arrow is of indeterminate angle and so skipped
Warning in doTryCatch(return(expr), name, parentenv, handler) :
  zero-length arrow is of indeterminate angle and so skipped
Warning in doTryCatch(return(expr), name, parentenv, handler) :
  zero-length arrow is of indeterminate angle and so skipped
Warning in doTryCatch(return(expr), name, parentenv, handler) :
  zero-length arrow is of indeterminate angle and so skipped
Warning in doTryCatch(return(expr), name, parentenv, handler) :
  zero-length arrow is of indeterminate angle and so skipped
Warning in doTryCatch(return(expr), name, parentenv, handler) :
  zero-length arrow is of indeterminate angle and so skipped
Warning in doTryCatch(return(expr), name, parentenv, handler) :
  zero-length arrow is of indeterminate angle and so skipped
Killed