Multiple platform build/check report for BioC 3.23 - CHECK results for notameStats on lconway

Hostname	OS	Arch (*)	R version	Installed pkgs
nebbiolo1	Linux (Ubuntu 24.04.3 LTS)	x86_64	R Under development (unstable) (2025-10-20 r88955) -- "Unsuffered Consequences"	4829
lconway	macOS 12.7.6 Monterey	x86_64	R Under development (unstable) (2025-10-21 r88958) -- "Unsuffered Consequences"	4602
kjohnson3	macOS 13.7.7 Ventura	arm64	R Under development (unstable) (2025-11-04 r88984) -- "Unsuffered Consequences"	4566
Click on any hostname to see more info about the system (e.g. compilers) () as reported by 'uname -p', except on Windows and Mac OS X*

CHECK results for notameStats on lconway

To the developers/maintainers of the notameStats package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/notameStats.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results

Summary

Package: notameStats

Version: 1.1.0

Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:notameStats.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings notameStats_1.1.0.tar.gz

StartedAt: 2025-11-20 22:52:30 -0500 (Thu, 20 Nov 2025)

EndedAt: 2025-11-20 22:58:03 -0500 (Thu, 20 Nov 2025)

EllapsedTime: 333.6 seconds

RetCode: 1

Status: ERROR

CheckDir: notameStats.Rcheck

Warnings: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:notameStats.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings notameStats_1.1.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory ‘/Users/biocbuild/bbs-3.23-bioc/meat/notameStats.Rcheck’
* using R Under development (unstable) (2025-10-21 r88958)
* using platform: x86_64-apple-darwin20
* R was compiled by
    Apple clang version 14.0.0 (clang-1400.0.29.202)
    GNU Fortran (GCC) 14.2.0
* running under: macOS Ventura 13.7.8
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘notameStats/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘notameStats’ version ‘1.1.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘notameStats’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... NOTE
License stub is invalid DCF.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
                                 user system elapsed
perform_auc                    21.550  3.471   6.706
perform_lmer                   19.581  3.040   6.271
pls_da                         19.916  1.884  21.946
muvr_analysis                  17.053  0.507  17.630
perform_non_parametric          9.335  6.385   5.276
perform_correlation_tests       7.329  3.927   4.446
pls                             8.632  0.238   8.917
perform_logistic                5.955  2.710   2.309
perform_homoscedasticity_tests  5.715  2.638   2.233
perform_lm                      4.673  2.491   1.986
summarize_results               4.226  1.929   1.671
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘testthat.R’
 ERROR
Running the tests in ‘tests/testthat.R’ failed.
Last 13 lines of output:
  INFO [2025-11-20 22:57:52] Tests performed
  [ FAIL 1 | WARN 1 | SKIP 0 | PASS 87 ]
  
  ══ Failed tests ════════════════════════════════════════════════════════════════
  ── Failure ('test_stats.R:654:3'): Simple tests work in cases where alternative levels for confidence intervals are returned in case 95% confidence interval can't be computed ──
  Expected `any(grepl(c("UCI0"), colnames(res)))` to be TRUE.
  Differences:
  `actual`:   FALSE
  `expected`: TRUE 
  
  
  [ FAIL 1 | WARN 1 | SKIP 0 | PASS 87 ]
  Error:
  ! Test failures.
  Execution halted
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 1 ERROR, 1 NOTE
See
  ‘/Users/biocbuild/bbs-3.23-bioc/meat/notameStats.Rcheck/00check.log’
for details.

Installation output

notameStats.Rcheck/00install.out

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL notameStats
###
##############################################################################
##############################################################################


* installing to library ‘/Library/Frameworks/R.framework/Versions/4.6-x86_64/Resources/library’
* installing *source* package ‘notameStats’ ...
** this is package ‘notameStats’ version ‘1.1.0’
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (notameStats)

Tests output

notameStats.Rcheck/tests/testthat.Rout.fail


R Under development (unstable) (2025-10-21 r88958) -- "Unsuffered Consequences"
Copyright (C) 2025 The R Foundation for Statistical Computing
Platform: x86_64-apple-darwin20

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> library(testthat)
> library(notameStats)
Loading required package: SummarizedExperiment
Loading required package: MatrixGenerics
Loading required package: matrixStats

Attaching package: 'MatrixGenerics'

The following objects are masked from 'package:matrixStats':

    colAlls, colAnyNAs, colAnys, colAvgsPerRowSet, colCollapse,
    colCounts, colCummaxs, colCummins, colCumprods, colCumsums,
    colDiffs, colIQRDiffs, colIQRs, colLogSumExps, colMadDiffs,
    colMads, colMaxs, colMeans2, colMedians, colMins, colOrderStats,
    colProds, colQuantiles, colRanges, colRanks, colSdDiffs, colSds,
    colSums2, colTabulates, colVarDiffs, colVars, colWeightedMads,
    colWeightedMeans, colWeightedMedians, colWeightedSds,
    colWeightedVars, rowAlls, rowAnyNAs, rowAnys, rowAvgsPerColSet,
    rowCollapse, rowCounts, rowCummaxs, rowCummins, rowCumprods,
    rowCumsums, rowDiffs, rowIQRDiffs, rowIQRs, rowLogSumExps,
    rowMadDiffs, rowMads, rowMaxs, rowMeans2, rowMedians, rowMins,
    rowOrderStats, rowProds, rowQuantiles, rowRanges, rowRanks,
    rowSdDiffs, rowSds, rowSums2, rowTabulates, rowVarDiffs, rowVars,
    rowWeightedMads, rowWeightedMeans, rowWeightedMedians,
    rowWeightedSds, rowWeightedVars

Loading required package: GenomicRanges
Loading required package: stats4
Loading required package: BiocGenerics
Loading required package: generics

Attaching package: 'generics'

The following objects are masked from 'package:base':

    as.difftime, as.factor, as.ordered, intersect, is.element, setdiff,
    setequal, union


Attaching package: 'BiocGenerics'

The following objects are masked from 'package:stats':

    IQR, mad, sd, var, xtabs

The following objects are masked from 'package:base':

    Filter, Find, Map, Position, Reduce, anyDuplicated, aperm, append,
    as.data.frame, basename, cbind, colnames, dirname, do.call,
    duplicated, eval, evalq, get, grep, grepl, is.unsorted, lapply,
    mapply, match, mget, order, paste, pmax, pmax.int, pmin, pmin.int,
    rank, rbind, rownames, sapply, saveRDS, table, tapply, unique,
    unsplit, which.max, which.min

Loading required package: S4Vectors

Attaching package: 'S4Vectors'

The following object is masked from 'package:utils':

    findMatches

The following objects are masked from 'package:base':

    I, expand.grid, unname

Loading required package: IRanges
Loading required package: Seqinfo
Loading required package: Biobase
Welcome to Bioconductor

    Vignettes contain introductory material; view with
    'browseVignettes()'. To cite Bioconductor, see
    'citation("Biobase")', and for packages 'citation("pkgname")'.


Attaching package: 'Biobase'

The following object is masked from 'package:MatrixGenerics':

    rowMedians

The following objects are masked from 'package:matrixStats':

    anyMissing, rowMedians

> 
> test_check("notameStats")
Running tests in parallel requires the 3rd edition.
INFO [2025-11-20 22:57:16] Starting to compute Cohen's D between groups B & A from time change 2 - 1
INFO [2025-11-20 22:57:16] Cohen's D computed.
INFO [2025-11-20 22:57:16] Starting to compute Cohen's D between groups B & A
INFO [2025-11-20 22:57:16] Cohen's D computed.
INFO [2025-11-20 22:57:17] Starting to compute fold changes.
INFO [2025-11-20 22:57:17] Fold changes computed.
INFO [2025-11-20 22:57:17] Starting to compute fold changes.
INFO [2025-11-20 22:57:17] Fold changes computed.
INFO [2025-11-20 22:57:17] Starting linear regression.
INFO [2025-11-20 22:57:19] Linear regression performed.
INFO [2025-11-20 22:57:19] Starting linear regression.
INFO [2025-11-20 22:57:21] Linear regression performed.
INFO [2025-11-20 22:57:21] 
92% of features flagged for low quality
INFO [2025-11-20 22:57:21] Starting linear regression.
INFO [2025-11-20 22:57:23] Linear regression performed.
INFO [2025-11-20 22:57:23] Starting logistic regression
INFO [2025-11-20 22:57:25] Logistic regression performed.
INFO [2025-11-20 22:57:25] Starting logistic regression
INFO [2025-11-20 22:57:27] Logistic regression performed.
INFO [2025-11-20 22:57:28] Starting to compute Cohen's D between groups B & A
INFO [2025-11-20 22:57:28] Cohen's D computed.
INFO [2025-11-20 22:57:28] Starting to compute Cohen's D between groups C & A
INFO [2025-11-20 22:57:28] Cohen's D computed.
INFO [2025-11-20 22:57:28] Starting to compute Cohen's D between groups C & B
INFO [2025-11-20 22:57:28] Cohen's D computed.
INFO [2025-11-20 22:57:29] Starting to compute Cohen's D between groups B & A from time change 2 - 1
INFO [2025-11-20 22:57:29] Cohen's D computed.
INFO [2025-11-20 22:57:30] Starting to compute Cohen's D between groups B & A from time change 3 - 1
INFO [2025-11-20 22:57:30] Cohen's D computed.
INFO [2025-11-20 22:57:30] Starting to compute Cohen's D between groups B & A from time change 3 - 2
INFO [2025-11-20 22:57:30] Cohen's D computed.
INFO [2025-11-20 22:57:30] Starting to compute Cohen's D between groups C & A from time change 2 - 1
INFO [2025-11-20 22:57:30] Cohen's D computed.
INFO [2025-11-20 22:57:30] Starting to compute Cohen's D between groups C & A from time change 3 - 1
INFO [2025-11-20 22:57:30] Cohen's D computed.
INFO [2025-11-20 22:57:31] Starting to compute Cohen's D between groups C & A from time change 3 - 2
INFO [2025-11-20 22:57:31] Cohen's D computed.
INFO [2025-11-20 22:57:31] Starting to compute Cohen's D between groups C & B from time change 2 - 1
INFO [2025-11-20 22:57:31] Cohen's D computed.
INFO [2025-11-20 22:57:31] Starting to compute Cohen's D between groups C & B from time change 3 - 1
INFO [2025-11-20 22:57:31] Cohen's D computed.
INFO [2025-11-20 22:57:31] Starting to compute Cohen's D between groups C & B from time change 3 - 2
INFO [2025-11-20 22:57:31] Cohen's D computed.
INFO [2025-11-20 22:57:32] Starting to compute Cohen's D between groups B & A from time change 2 - 1
INFO [2025-11-20 22:57:32] Cohen's D computed.
INFO [2025-11-20 22:57:32] Starting to compute Cohen's D between groups B & A from time change 3 - 1
INFO [2025-11-20 22:57:32] Cohen's D computed.
INFO [2025-11-20 22:57:32] Starting to compute Cohen's D between groups B & A from time change 3 - 2
INFO [2025-11-20 22:57:32] Cohen's D computed.
INFO [2025-11-20 22:57:32] Starting to compute Cohen's D between groups C & A from time change 2 - 1
INFO [2025-11-20 22:57:32] Cohen's D computed.
INFO [2025-11-20 22:57:32] Starting to compute Cohen's D between groups C & A from time change 3 - 1
INFO [2025-11-20 22:57:33] Cohen's D computed.
INFO [2025-11-20 22:57:33] Starting to compute Cohen's D between groups C & A from time change 3 - 2
INFO [2025-11-20 22:57:33] Cohen's D computed.
INFO [2025-11-20 22:57:33] Starting to compute Cohen's D between groups C & B from time change 2 - 1
INFO [2025-11-20 22:57:33] Cohen's D computed.
INFO [2025-11-20 22:57:33] Starting to compute Cohen's D between groups C & B from time change 3 - 1
INFO [2025-11-20 22:57:33] Cohen's D computed.
INFO [2025-11-20 22:57:33] Starting to compute Cohen's D between groups C & B from time change 3 - 2
INFO [2025-11-20 22:57:34] Cohen's D computed.
INFO [2025-11-20 22:57:34] Starting to compute Cohen's D between groups B & A from time change 2 - 1
INFO [2025-11-20 22:57:34] Cohen's D computed.
INFO [2025-11-20 22:57:34] Starting to compute Cohen's D between groups B & A from time change 3 - 1
INFO [2025-11-20 22:57:34] Cohen's D computed.
INFO [2025-11-20 22:57:34] Starting to compute Cohen's D between groups B & A from time change 3 - 2
INFO [2025-11-20 22:57:34] Cohen's D computed.
INFO [2025-11-20 22:57:34] Starting to compute Cohen's D between groups C & A from time change 2 - 1
INFO [2025-11-20 22:57:35] Cohen's D computed.
INFO [2025-11-20 22:57:35] Starting to compute Cohen's D between groups C & B from time change 2 - 1
INFO [2025-11-20 22:57:35] Cohen's D computed.
INFO [2025-11-20 22:57:35] Starting to compute Cohen's D between groups B & A from time change 2 - 1
INFO [2025-11-20 22:57:35] Cohen's D computed.
INFO [2025-11-20 22:57:35] Starting to compute Cohen's D between groups B & A from time change 3 - 1
INFO [2025-11-20 22:57:35] Cohen's D computed.
INFO [2025-11-20 22:57:35] Starting to compute Cohen's D between groups B & A from time change 3 - 2
INFO [2025-11-20 22:57:36] Cohen's D computed.
INFO [2025-11-20 22:57:36] Starting to compute Cohen's D between groups C & A from time change 2 - 1
INFO [2025-11-20 22:57:36] Cohen's D computed.
INFO [2025-11-20 22:57:36] Starting to compute Cohen's D between groups C & B from time change 2 - 1
INFO [2025-11-20 22:57:36] Cohen's D computed.
INFO [2025-11-20 22:57:36] Starting to compute Cohen's D between groups B & A from time change 3 - 2
INFO [2025-11-20 22:57:37] Cohen's D computed.
INFO [2025-11-20 22:57:37] Starting to compute Cohen's D between groups C & A from time change 2 - 1
INFO [2025-11-20 22:57:37] Cohen's D computed.
INFO [2025-11-20 22:57:37] Starting to compute Cohen's D between groups C & A from time change 3 - 1
INFO [2025-11-20 22:57:37] Cohen's D computed.
INFO [2025-11-20 22:57:37] Starting to compute Cohen's D between groups C & A from time change 3 - 2
INFO [2025-11-20 22:57:37] Cohen's D computed.
INFO [2025-11-20 22:57:38] Starting to compute Cohen's D between groups C & B from time change 2 - 1
INFO [2025-11-20 22:57:38] Cohen's D computed.
INFO [2025-11-20 22:57:38] Starting to compute Cohen's D between groups C & B from time change 3 - 1
INFO [2025-11-20 22:57:38] Cohen's D computed.
INFO [2025-11-20 22:57:38] Starting to compute Cohen's D between groups C & B from time change 3 - 2
INFO [2025-11-20 22:57:38] Cohen's D computed.
INFO [2025-11-20 22:57:38] Starting paired tests for 1 & 2
INFO [2025-11-20 22:57:38] Found 20 complete pairs.
INFO [2025-11-20 22:57:38] Paired tests performed.
INFO [2025-11-20 22:57:39] Starting tests for 1 & 2
INFO [2025-11-20 22:57:39] Tests performed
INFO [2025-11-20 22:57:39] Starting tests for 1 & 3
INFO [2025-11-20 22:57:39] Tests performed
INFO [2025-11-20 22:57:39] Starting tests for 2 & 3
INFO [2025-11-20 22:57:39] Tests performed
INFO [2025-11-20 22:57:40] Starting tests for 1 & 2
INFO [2025-11-20 22:57:40] Tests performed
INFO [2025-11-20 22:57:40] Starting tests for 1 & 3
INFO [2025-11-20 22:57:40] Tests performed
INFO [2025-11-20 22:57:40] Starting tests for 2 & 3
INFO [2025-11-20 22:57:41] Tests performed
INFO [2025-11-20 22:57:41] Starting paired tests for 1 & 2
INFO [2025-11-20 22:57:41] Found 4 complete pairs.
INFO [2025-11-20 22:57:41] Paired tests performed.
INFO [2025-11-20 22:57:41] Starting paired tests for 1 & 3
INFO [2025-11-20 22:57:41] Found 4 complete pairs.
INFO [2025-11-20 22:57:41] Paired tests performed.
INFO [2025-11-20 22:57:41] Starting paired tests for 2 & 3
INFO [2025-11-20 22:57:41] Found 4 complete pairs.
INFO [2025-11-20 22:57:41] Paired tests performed.
INFO [2025-11-20 22:57:42] Starting paired tests for 1 & 2
INFO [2025-11-20 22:57:42] Found 8 complete pairs.
INFO [2025-11-20 22:57:42] Paired tests performed.
INFO [2025-11-20 22:57:42] Starting paired tests for 1 & 3
INFO [2025-11-20 22:57:42] Found 8 complete pairs.
INFO [2025-11-20 22:57:42] Paired tests performed.
INFO [2025-11-20 22:57:42] Starting paired tests for 2 & 3
INFO [2025-11-20 22:57:42] Found 8 complete pairs.
INFO [2025-11-20 22:57:42] Paired tests performed.
INFO [2025-11-20 22:57:43] Starting paired tests for 1 & 2
INFO [2025-11-20 22:57:43] Found 4 complete pairs.
INFO [2025-11-20 22:57:43] Paired tests performed.
INFO [2025-11-20 22:57:43] Starting paired tests for 1 & 3
INFO [2025-11-20 22:57:43] Found 4 complete pairs.
INFO [2025-11-20 22:57:43] Paired tests performed.
INFO [2025-11-20 22:57:43] Starting paired tests for 2 & 3
INFO [2025-11-20 22:57:43] Found 4 complete pairs.
INFO [2025-11-20 22:57:44] Paired tests performed.
INFO [2025-11-20 22:57:44] Starting tests for A & B
INFO [2025-11-20 22:57:45] Tests performed
INFO [2025-11-20 22:57:46] Starting paired tests for 1 & 2
INFO [2025-11-20 22:57:46] Found 20 complete pairs.
INFO [2025-11-20 22:57:46] Paired tests performed.
INFO [2025-11-20 22:57:47] Starting tests for 1 & 2
INFO [2025-11-20 22:57:47] Tests performed
INFO [2025-11-20 22:57:47] Starting tests for 1 & 3
INFO [2025-11-20 22:57:47] Tests performed
INFO [2025-11-20 22:57:47] Starting tests for 2 & 3
INFO [2025-11-20 22:57:48] Tests performed
INFO [2025-11-20 22:57:48] Starting tests for 1 & 2
INFO [2025-11-20 22:57:48] Tests performed
INFO [2025-11-20 22:57:48] Starting tests for 1 & 3
INFO [2025-11-20 22:57:48] Tests performed
INFO [2025-11-20 22:57:49] Starting tests for 2 & 3
INFO [2025-11-20 22:57:49] Tests performed
INFO [2025-11-20 22:57:49] Starting paired tests for 1 & 2
INFO [2025-11-20 22:57:49] Found 4 complete pairs.
INFO [2025-11-20 22:57:49] Paired tests performed.
INFO [2025-11-20 22:57:49] Starting paired tests for 1 & 3
INFO [2025-11-20 22:57:49] Found 4 complete pairs.
INFO [2025-11-20 22:57:50] Paired tests performed.
INFO [2025-11-20 22:57:50] Starting paired tests for 2 & 3
INFO [2025-11-20 22:57:50] Found 4 complete pairs.
INFO [2025-11-20 22:57:50] Paired tests performed.
INFO [2025-11-20 22:57:50] Starting correlation tests.
INFO [2025-11-20 22:57:50] Performing correlation tests for single object
INFO [2025-11-20 22:57:50] Correlation tests performed.
INFO [2025-11-20 22:57:50] Starting correlation tests.
INFO [2025-11-20 22:57:50] Starting correlation tests.
INFO [2025-11-20 22:57:50] Starting correlation tests.
INFO [2025-11-20 22:57:50] Starting correlation tests.
INFO [2025-11-20 22:57:51] Performing correlation tests for two objects
INFO [2025-11-20 22:57:51] Correlation tests performed.
INFO [2025-11-20 22:57:51] Starting correlation tests.
INFO [2025-11-20 22:57:51] Performing correlation tests for two objects
INFO [2025-11-20 22:57:51] Correlation tests performed.
INFO [2025-11-20 22:57:51] Starting paired tests for 1 & 2
INFO [2025-11-20 22:57:51] Found 20 complete pairs.
INFO [2025-11-20 22:57:52] Paired tests performed.
Saving _problems/test_stats-654.R
INFO [2025-11-20 22:57:52] Starting tests for A & B
INFO [2025-11-20 22:57:52] Tests performed
[ FAIL 1 | WARN 1 | SKIP 0 | PASS 87 ]

══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test_stats.R:654:3'): Simple tests work in cases where alternative levels for confidence intervals are returned in case 95% confidence interval can't be computed ──
Expected `any(grepl(c("UCI0"), colnames(res)))` to be TRUE.
Differences:
`actual`:   FALSE
`expected`: TRUE 


[ FAIL 1 | WARN 1 | SKIP 0 | PASS 87 ]
Error:
! Test failures.
Execution halted

Example timings

notameStats.Rcheck/notameStats-Ex.timings

name	user	system	elapsed
cohens_d	3.219	0.502	3.302
fit_rf	0.186	0.024	0.210
fold_change	0.549	0.564	0.429
importance_rf	0.179	0.022	0.202
muvr_analysis	17.053	0.507	17.630
perform_auc	21.550	3.471	6.706
perform_correlation_tests	7.329	3.927	4.446
perform_homoscedasticity_tests	5.715	2.638	2.233
perform_kruskal_wallis	2.087	1.073	0.906
perform_lm	4.673	2.491	1.986
perform_lm_anova	2.727	1.707	1.259
perform_lmer	19.581	3.040	6.271
perform_logistic	5.955	2.710	2.309
perform_non_parametric	9.335	6.385	5.276
perform_oneway_anova	2.556	1.878	1.350
perform_permanova	1.431	0.108	1.547
perform_t_test	1.870	1.581	1.779
pls	8.632	0.238	8.917
pls_da	19.916	1.884	21.946
summarize_results	4.226	1.929	1.671
summary_statistics	1.679	1.208	1.032