Britta Velten
| Snapshot Date: 2026-03-09 13:40 -0400 (Mon, 09 Mar 2026) |
| git_url: https://git.bioconductor.org/packages/graper |
| git_branch: devel |
| git_last_commit: 95474d7 |
| git_last_commit_date: 2025-10-29 10:49:21 -0400 (Wed, 29 Oct 2025) |
| Back to Multiple platform build/check report for BioC 3.23: simplified long |
|
This page was generated on 2026-03-10 11:32 -0400 (Tue, 10 Mar 2026).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 24.04.3 LTS) | x86_64 | R Under development (unstable) (2026-03-05 r89546) -- "Unsuffered Consequences" | 4522 |
| kjohnson3 | macOS 13.7.7 Ventura | arm64 | R Under development (unstable) (2026-03-01 r89506) -- "Unsuffered Consequences" | 2847 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 928/2360 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| graper 1.27.0 (landing page) Britta Velten
| nebbiolo1 | Linux (Ubuntu 24.04.3 LTS) / x86_64 | OK | OK | OK | | ||||||||
| kjohnson3 | macOS 13.7.7 Ventura / arm64 | OK | OK | OK | ERROR | |||||||||
| See other builds for graper in R Universe. | ||||||||||||||
|
To the developers/maintainers of the graper package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/graper.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: graper |
| Version: 1.27.0 |
| Command: /home/biocbuild/bbs-3.23-bioc/R/bin/R CMD check --install=check:graper.install-out.txt --library=/home/biocbuild/bbs-3.23-bioc/R/site-library --timings graper_1.27.0.tar.gz |
| StartedAt: 2026-03-09 23:45:31 -0400 (Mon, 09 Mar 2026) |
| EndedAt: 2026-03-09 23:47:02 -0400 (Mon, 09 Mar 2026) |
| EllapsedTime: 91.1 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: graper.Rcheck |
| Warnings: 0 |
##############################################################################
##############################################################################
###
### Running command:
###
### /home/biocbuild/bbs-3.23-bioc/R/bin/R CMD check --install=check:graper.install-out.txt --library=/home/biocbuild/bbs-3.23-bioc/R/site-library --timings graper_1.27.0.tar.gz
###
##############################################################################
##############################################################################
* using log directory ‘/home/biocbuild/bbs-3.23-bioc/meat/graper.Rcheck’
* using R Under development (unstable) (2026-03-05 r89546)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
gcc (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
GNU Fortran (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
* running under: Ubuntu 24.04.4 LTS
* using session charset: UTF-8
* current time: 2026-03-10 03:45:31 UTC
* checking for file ‘graper/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘graper’ version ‘1.27.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘graper’ can be installed ... OK
* used C++ compiler: ‘g++ (Ubuntu 13.3.0-6ubuntu2~24.04.1) 13.3.0’
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... NOTE
checkRd: (-1) predict.graper.Rd:19-21: Lost braces in \itemize; meant \describe ?
checkRd: (-1) predict.graper.Rd:22: Lost braces in \itemize; meant \describe ?
checkRd: (-1) predict.graper.Rd:23-24: Lost braces in \itemize; meant \describe ?
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking compilation flags in Makevars ... OK
* checking for GNU extensions in Makefiles ... OK
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking use of PKG_*FLAGS in Makefiles ... OK
* checking compiled code ... INFO
Note: information on .o files is not available
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
Running ‘testthat.R’
OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... OK
* checking PDF version of manual ... OK
* DONE
Status: 1 NOTE
See
‘/home/biocbuild/bbs-3.23-bioc/meat/graper.Rcheck/00check.log’
for details.
graper.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.23-bioc/R/bin/R CMD INSTALL graper ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.23-bioc/R/site-library’ * installing *source* package ‘graper’ ... ** this is package ‘graper’ version ‘1.27.0’ ** using staged installation ** libs using C++ compiler: ‘g++ (Ubuntu 13.3.0-6ubuntu2~24.04.1) 13.3.0’ g++ -std=gnu++20 -I"/home/biocbuild/bbs-3.23-bioc/R/include" -DNDEBUG -I'/home/biocbuild/bbs-3.23-bioc/R/site-library/Rcpp/include' -I'/home/biocbuild/bbs-3.23-bioc/R/site-library/RcppArmadillo/include' -I'/home/biocbuild/bbs-3.23-bioc/R/site-library/BH/include' -I/usr/local/include -fpic -g -O2 -Wall -Werror=format-security -c RcppExports.cpp -o RcppExports.o g++ -std=gnu++20 -I"/home/biocbuild/bbs-3.23-bioc/R/include" -DNDEBUG -I'/home/biocbuild/bbs-3.23-bioc/R/site-library/Rcpp/include' -I'/home/biocbuild/bbs-3.23-bioc/R/site-library/RcppArmadillo/include' -I'/home/biocbuild/bbs-3.23-bioc/R/site-library/BH/include' -I/usr/local/include -fpic -g -O2 -Wall -Werror=format-security -c fit_graper.cpp -o fit_graper.o g++ -std=gnu++20 -shared -L/home/biocbuild/bbs-3.23-bioc/R/lib -L/usr/local/lib -o graper.so RcppExports.o fit_graper.o -llapack -L/home/biocbuild/bbs-3.23-bioc/R/lib -lRblas -lgfortran -lm -lquadmath -L/home/biocbuild/bbs-3.23-bioc/R/lib -lR installing to /home/biocbuild/bbs-3.23-bioc/R/site-library/00LOCK-graper/00new/graper/libs ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (graper)
graper.Rcheck/tests/testthat.Rout
R Under development (unstable) (2026-03-05 r89546) -- "Unsuffered Consequences"
Copyright (C) 2026 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> library(testthat)
> library(graper)
>
> test_check("graper")
iteration 1
Updating parameters of variational distributions...
Calculating ELB..
ELB=-850.887
ELB improved by inf
iteration 2
Updating parameters of variational distributions...
Calculating ELB..
ELB=-565.727
ELB improved by 285.16
iteration 3
Updating parameters of variational distributions...
Calculating ELB..
ELB=-505.886
ELB improved by 59.8407
iteration 4
Updating parameters of variational distributions...
Calculating ELB..
ELB=-466.968
ELB improved by 38.9187
iteration 5
Updating parameters of variational distributions...
Calculating ELB..
ELB=-449.235
ELB improved by 17.7328
iteration 6
Updating parameters of variational distributions...
Calculating ELB..
ELB=-442.153
ELB improved by 7.08162
iteration 7
Updating parameters of variational distributions...
Calculating ELB..
ELB=-438.316
ELB improved by 3.83717
iteration 8
Updating parameters of variational distributions...
Calculating ELB..
ELB=-435.491
ELB improved by 2.82526
iteration 9
Updating parameters of variational distributions...
Calculating ELB..
ELB=-433.044
ELB improved by 2.44709
iteration 10
Updating parameters of variational distributions...
Calculating ELB..
ELB=-430.75
ELB improved by 2.29334
iteration 11
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.542
ELB improved by 2.20817
iteration 12
Updating parameters of variational distributions...
Calculating ELB..
ELB=-426.421
ELB improved by 2.12127
iteration 13
Updating parameters of variational distributions...
Calculating ELB..
ELB=-424.43
ELB improved by 1.99143
iteration 14
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.632
ELB improved by 1.79794
iteration 15
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.088
ELB improved by 1.54388
iteration 16
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.833
ELB improved by 1.25434
iteration 17
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.866
ELB improved by 0.967823
iteration 18
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.145
ELB improved by 0.720727
iteration 19
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.614
ELB improved by 0.531282
iteration 20
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.216
ELB improved by 0.39718
iteration 21
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.911
ELB improved by 0.305684
iteration 22
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.667
ELB improved by 0.243423
iteration 23
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.467
ELB improved by 0.20036
iteration 24
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.297
ELB improved by 0.169915
iteration 25
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.149
ELB improved by 0.147954
iteration 26
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.017
ELB improved by 0.131857
iteration 27
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.897
ELB improved by 0.119917
iteration 28
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.786
ELB improved by 0.110995
iteration 29
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.682
ELB improved by 0.104338
iteration 30
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.583
ELB improved by 0.099463
iteration 31
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.486
ELB improved by 0.0960983
iteration 32
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.392
ELB improved by 0.0941475
iteration 33
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.299
ELB improved by 0.0936841
iteration 34
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.204
ELB improved by 0.0949747
iteration 35
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.105
ELB improved by 0.0985377
iteration 36
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415
ELB improved by 0.105242
iteration 37
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.883
ELB improved by 0.11643
iteration 38
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.749
ELB improved by 0.134004
iteration 39
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.589
ELB improved by 0.160257
iteration 40
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.392
ELB improved by 0.1971
iteration 41
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.148
ELB improved by 0.244268
iteration 42
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.851
ELB improved by 0.296656
iteration 43
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.508
ELB improved by 0.343183
iteration 44
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.136
ELB improved by 0.371849
iteration 45
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.759
ELB improved by 0.377312
iteration 46
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.397
ELB improved by 0.361462
iteration 47
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.066
ELB improved by 0.331204
iteration 48
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.769
ELB improved by 0.296655
iteration 49
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.502
ELB improved by 0.267466
iteration 50
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.252
ELB improved by 0.25043
iteration 51
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.001
ELB improved by 0.250591
iteration 52
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.727
ELB improved by 0.27357
iteration 53
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.405
ELB improved by 0.322537
iteration 54
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.026
ELB improved by 0.378714
iteration 55
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.634
ELB improved by 0.392636
iteration 56
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.281
ELB improved by 0.352844
iteration 57
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.98
ELB improved by 0.300791
iteration 58
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.721
ELB improved by 0.258586
iteration 59
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.495
ELB improved by 0.22641
iteration 60
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.293
ELB improved by 0.201475
iteration 61
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.111
ELB improved by 0.182163
iteration 62
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.944
ELB improved by 0.167745
iteration 63
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.785
ELB improved by 0.158066
iteration 64
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.632
ELB improved by 0.153585
iteration 65
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.476
ELB improved by 0.155738
iteration 66
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.309
ELB improved by 0.167568
iteration 67
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.115
ELB improved by 0.193889
iteration 68
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.877
ELB improved by 0.237782
iteration 69
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.588
ELB improved by 0.289017
iteration 70
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.268
ELB improved by 0.31951
iteration 71
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.954
ELB improved by 0.314064
iteration 72
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.669
ELB improved by 0.285087
iteration 73
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.423
ELB improved by 0.246047
iteration 74
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.219
ELB improved by 0.204576
iteration 75
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.052
ELB improved by 0.16659
iteration 76
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.916
ELB improved by 0.136034
iteration 77
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.801
ELB improved by 0.114585
iteration 78
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.7
ELB improved by 0.101857
iteration 79
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.604
ELB improved by 0.0955426
iteration 80
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.512
ELB improved by 0.0915425
iteration 81
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.427
ELB improved by 0.0854853
iteration 82
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.351
ELB improved by 0.0757535
iteration 83
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.287
ELB improved by 0.0641496
iteration 84
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.234
ELB improved by 0.0529776
iteration 85
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.191
ELB improved by 0.0430114
iteration 86
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.157
ELB improved by 0.0341128
iteration 87
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.131
ELB improved by 0.0262751
iteration 88
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.111
ELB improved by 0.0197635
iteration 89
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.096
ELB improved by 0.01477
iteration 90
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.085
ELB improved by 0.0112188
iteration 91
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.076
ELB improved by 0.00883142
ELB converged
iteration 1
Updating parameters of variational distributions...
Calculating ELB..
ELB=-901.696
ELB improved by inf
iteration 2
Updating parameters of variational distributions...
Calculating ELB..
ELB=-597.778
ELB improved by 303.918
iteration 3
Updating parameters of variational distributions...
Calculating ELB..
ELB=-538.09
ELB improved by 59.6885
iteration 4
Updating parameters of variational distributions...
Calculating ELB..
ELB=-496.367
ELB improved by 41.7223
iteration 5
Updating parameters of variational distributions...
Calculating ELB..
ELB=-474.395
ELB improved by 21.9726
iteration 6
Updating parameters of variational distributions...
Calculating ELB..
ELB=-464.02
ELB improved by 10.375
iteration 7
Updating parameters of variational distributions...
Calculating ELB..
ELB=-457.64
ELB improved by 6.3801
iteration 8
Updating parameters of variational distributions...
Calculating ELB..
ELB=-452.282
ELB improved by 5.35753
iteration 9
Updating parameters of variational distributions...
Calculating ELB..
ELB=-447.019
ELB improved by 5.26276
iteration 10
Updating parameters of variational distributions...
Calculating ELB..
ELB=-441.503
ELB improved by 5.51658
iteration 11
Updating parameters of variational distributions...
Calculating ELB..
ELB=-435.72
ELB improved by 5.78289
iteration 12
Updating parameters of variational distributions...
Calculating ELB..
ELB=-430.015
ELB improved by 5.70494
iteration 13
Updating parameters of variational distributions...
Calculating ELB..
ELB=-424.984
ELB improved by 5.03138
iteration 14
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.112
ELB improved by 3.87157
iteration 15
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.402
ELB improved by 2.70949
iteration 16
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.467
ELB improved by 1.93517
iteration 17
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.97
ELB improved by 1.49714
iteration 18
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.797
ELB improved by 1.17309
iteration 19
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.895
ELB improved by 0.901913
iteration 20
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.204
ELB improved by 0.691014
iteration 21
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.658
ELB improved by 0.545905
iteration 22
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.207
ELB improved by 0.451345
iteration 23
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.819
ELB improved by 0.387996
iteration 24
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.475
ELB improved by 0.343474
iteration 25
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.165
ELB improved by 0.310329
iteration 26
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.882
ELB improved by 0.283104
iteration 27
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.624
ELB improved by 0.257779
iteration 28
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.391
ELB improved by 0.233089
iteration 29
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.18
ELB improved by 0.210772
iteration 30
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.987
ELB improved by 0.193356
iteration 31
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.805
ELB improved by 0.182065
iteration 32
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.628
ELB improved by 0.176549
iteration 33
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.453
ELB improved by 0.175105
iteration 34
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.279
ELB improved by 0.174513
iteration 35
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.108
ELB improved by 0.17083
iteration 36
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.946
ELB improved by 0.162204
iteration 37
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.795
ELB improved by 0.15046
iteration 38
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.657
ELB improved by 0.138704
iteration 39
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.528
ELB improved by 0.128652
iteration 40
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.407
ELB improved by 0.120554
iteration 41
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.293
ELB improved by 0.114139
iteration 42
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.184
ELB improved by 0.109173
iteration 43
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.078
ELB improved by 0.105596
iteration 44
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.975
ELB improved by 0.103518
iteration 45
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.872
ELB improved by 0.103221
iteration 46
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.767
ELB improved by 0.105192
iteration 47
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.656
ELB improved by 0.110183
iteration 48
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.537
ELB improved by 0.11921
iteration 49
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.404
ELB improved by 0.133297
iteration 50
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.251
ELB improved by 0.152554
iteration 51
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.077
ELB improved by 0.174591
iteration 52
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.882
ELB improved by 0.194237
iteration 53
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.675
ELB improved by 0.207286
iteration 54
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.461
ELB improved by 0.2146
iteration 55
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.24
ELB improved by 0.220217
iteration 56
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.013
ELB improved by 0.227207
iteration 57
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.776
ELB improved by 0.236683
iteration 58
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.528
ELB improved by 0.248696
iteration 59
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.265
ELB improved by 0.262994
iteration 60
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.985
ELB improved by 0.279355
iteration 61
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.688
ELB improved by 0.297645
iteration 62
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.37
ELB improved by 0.317562
iteration 63
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.032
ELB improved by 0.338006
iteration 64
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.676
ELB improved by 0.356285
iteration 65
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.308
ELB improved by 0.367944
iteration 66
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.94
ELB improved by 0.368033
iteration 67
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.586
ELB improved by 0.353436
iteration 68
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.262
ELB improved by 0.324517
iteration 69
Updating parameters of variational distributions...
Calculating ELB..
ELB=-400.977
ELB improved by 0.284896
iteration 70
Updating parameters of variational distributions...
Calculating ELB..
ELB=-400.737
ELB improved by 0.239881
iteration 71
Updating parameters of variational distributions...
Calculating ELB..
ELB=-400.542
ELB improved by 0.194704
iteration 72
Updating parameters of variational distributions...
Calculating ELB..
ELB=-400.389
ELB improved by 0.153317
iteration 73
Updating parameters of variational distributions...
Calculating ELB..
ELB=-400.271
ELB improved by 0.117973
iteration 74
Updating parameters of variational distributions...
Calculating ELB..
ELB=-400.182
ELB improved by 0.089405
iteration 75
Updating parameters of variational distributions...
Calculating ELB..
ELB=-400.114
ELB improved by 0.0673046
iteration 76
Updating parameters of variational distributions...
Calculating ELB..
ELB=-400.064
ELB improved by 0.0507984
iteration 77
Updating parameters of variational distributions...
Calculating ELB..
ELB=-400.025
ELB improved by 0.0388129
iteration 78
Updating parameters of variational distributions...
Calculating ELB..
ELB=-399.995
ELB improved by 0.0303035
iteration 79
Updating parameters of variational distributions...
Calculating ELB..
ELB=-399.97
ELB improved by 0.0243701
iteration 80
Updating parameters of variational distributions...
Calculating ELB..
ELB=-399.95
ELB improved by 0.0202923
iteration 81
Updating parameters of variational distributions...
Calculating ELB..
ELB=-399.932
ELB improved by 0.0175184
iteration 82
Updating parameters of variational distributions...
Calculating ELB..
ELB=-399.917
ELB improved by 0.0156325
iteration 83
Updating parameters of variational distributions...
Calculating ELB..
ELB=-399.902
ELB improved by 0.0143186
iteration 84
Updating parameters of variational distributions...
Calculating ELB..
ELB=-399.889
ELB improved by 0.0133309
iteration 85
Updating parameters of variational distributions...
Calculating ELB..
ELB=-399.877
ELB improved by 0.0124766
iteration 86
Updating parameters of variational distributions...
Calculating ELB..
ELB=-399.865
ELB improved by 0.0116133
iteration 87
Updating parameters of variational distributions...
Calculating ELB..
ELB=-399.854
ELB improved by 0.010656
iteration 88
Updating parameters of variational distributions...
Calculating ELB..
ELB=-399.845
ELB improved by 0.00958475
ELB converged
iteration 1
Updating parameters of variational distributions...
Calculating ELB..
ELB=-828.421
ELB improved by inf
iteration 2
Updating parameters of variational distributions...
Calculating ELB..
ELB=-574.538
ELB improved by 253.883
iteration 3
Updating parameters of variational distributions...
Calculating ELB..
ELB=-512.659
ELB improved by 61.8787
iteration 4
Updating parameters of variational distributions...
Calculating ELB..
ELB=-471.823
ELB improved by 40.8364
iteration 5
Updating parameters of variational distributions...
Calculating ELB..
ELB=-454.167
ELB improved by 17.6556
iteration 6
Updating parameters of variational distributions...
Calculating ELB..
ELB=-446.34
ELB improved by 7.82678
iteration 7
Updating parameters of variational distributions...
Calculating ELB..
ELB=-441.156
ELB improved by 5.18481
iteration 8
Updating parameters of variational distributions...
Calculating ELB..
ELB=-436.461
ELB improved by 4.69424
iteration 9
Updating parameters of variational distributions...
Calculating ELB..
ELB=-431.677
ELB improved by 4.78416
iteration 10
Updating parameters of variational distributions...
Calculating ELB..
ELB=-427.005
ELB improved by 4.67214
iteration 11
Updating parameters of variational distributions...
Calculating ELB..
ELB=-423.075
ELB improved by 3.93026
iteration 12
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.293
ELB improved by 2.78216
iteration 13
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.534
ELB improved by 1.75845
iteration 14
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.447
ELB improved by 1.08764
iteration 15
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.743
ELB improved by 0.703766
iteration 16
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.253
ELB improved by 0.489841
iteration 17
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.888
ELB improved by 0.365413
iteration 18
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.602
ELB improved by 0.285074
iteration 19
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.375
ELB improved by 0.227002
iteration 20
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.192
ELB improved by 0.183182
iteration 21
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.042
ELB improved by 0.150644
iteration 22
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.915
ELB improved by 0.12691
iteration 23
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.805
ELB improved by 0.109475
iteration 24
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.709
ELB improved by 0.0963206
iteration 25
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.623
ELB improved by 0.0860665
iteration 26
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.545
ELB improved by 0.0778352
iteration 27
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.474
ELB improved by 0.0710735
iteration 28
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.409
ELB improved by 0.065423
iteration 29
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.348
ELB improved by 0.0606409
iteration 30
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.291
ELB improved by 0.0565552
iteration 31
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.238
ELB improved by 0.0530391
iteration 32
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.188
ELB improved by 0.049996
iteration 33
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.141
ELB improved by 0.0473502
iteration 34
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.096
ELB improved by 0.0450412
iteration 35
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.053
ELB improved by 0.0430198
iteration 36
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.012
ELB improved by 0.0412451
iteration 37
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.972
ELB improved by 0.0396831
iteration 38
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.934
ELB improved by 0.0383048
iteration 39
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.897
ELB improved by 0.0370855
iteration 40
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.861
ELB improved by 0.0360038
iteration 41
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.826
ELB improved by 0.0350412
iteration 42
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.791
ELB improved by 0.0341812
iteration 43
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.758
ELB improved by 0.0334094
iteration 44
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.725
ELB improved by 0.0327131
iteration 45
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.693
ELB improved by 0.0320808
iteration 46
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.662
ELB improved by 0.0315023
iteration 47
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.631
ELB improved by 0.0309683
iteration 48
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.6
ELB improved by 0.0304707
iteration 49
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.57
ELB improved by 0.030002
iteration 50
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.541
ELB improved by 0.0295557
iteration 51
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.512
ELB improved by 0.029126
iteration 52
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.483
ELB improved by 0.0287077
iteration 53
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.454
ELB improved by 0.0282962
iteration 54
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.427
ELB improved by 0.027888
iteration 55
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.399
ELB improved by 0.0274797
iteration 56
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.372
ELB improved by 0.0270688
iteration 57
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.345
ELB improved by 0.0266533
iteration 58
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.319
ELB improved by 0.0262319
iteration 59
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.293
ELB improved by 0.0258036
iteration 60
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.268
ELB improved by 0.0253681
iteration 61
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.243
ELB improved by 0.0249253
iteration 62
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.219
ELB improved by 0.0244758
iteration 63
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.195
ELB improved by 0.0240204
iteration 64
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.171
ELB improved by 0.0235602
iteration 65
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.148
ELB improved by 0.0230965
iteration 66
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.125
ELB improved by 0.0226307
iteration 67
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.103
ELB improved by 0.0221646
iteration 68
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.081
ELB improved by 0.0216997
iteration 69
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.06
ELB improved by 0.0212378
iteration 70
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.039
ELB improved by 0.0207805
iteration 71
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.019
ELB improved by 0.0203292
iteration 72
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.999
ELB improved by 0.0198855
iteration 73
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.98
ELB improved by 0.0194505
iteration 74
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.961
ELB improved by 0.0190254
iteration 75
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.942
ELB improved by 0.0186112
iteration 76
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.924
ELB improved by 0.0182086
iteration 77
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.906
ELB improved by 0.0178183
iteration 78
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.889
ELB improved by 0.0174406
iteration 79
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.872
ELB improved by 0.017076
iteration 80
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.855
ELB improved by 0.0167245
iteration 81
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.838
ELB improved by 0.0163862
iteration 82
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.822
ELB improved by 0.0160611
iteration 83
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.807
ELB improved by 0.0157491
iteration 84
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.791
ELB improved by 0.0154498
iteration 85
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.776
ELB improved by 0.0151631
iteration 86
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.761
ELB improved by 0.0148887
iteration 87
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.747
ELB improved by 0.0146262
iteration 88
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.732
ELB improved by 0.0143752
iteration 89
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.718
ELB improved by 0.0141354
iteration 90
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.704
ELB improved by 0.0139066
iteration 91
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.69
ELB improved by 0.0136882
iteration 92
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.677
ELB improved by 0.01348
iteration 93
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.664
ELB improved by 0.0132816
iteration 94
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.651
ELB improved by 0.0130928
iteration 95
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.638
ELB improved by 0.0129132
iteration 96
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.625
ELB improved by 0.0127427
iteration 97
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.612
ELB improved by 0.012581
iteration 98
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.6
ELB improved by 0.0124279
iteration 99
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.588
ELB improved by 0.0122832
iteration 100
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.575
ELB improved by 0.0121468
iteration 101
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.563
ELB improved by 0.0120185
iteration 102
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.552
ELB improved by 0.0118982
iteration 103
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.54
ELB improved by 0.0117858
iteration 104
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.528
ELB improved by 0.0116814
iteration 105
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.516
ELB improved by 0.0115847
iteration 106
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.505
ELB improved by 0.0114958
iteration 107
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.494
ELB improved by 0.0114146
iteration 108
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.482
ELB improved by 0.0113412
iteration 109
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.471
ELB improved by 0.0112755
iteration 110
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.46
ELB improved by 0.0112175
iteration 111
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.449
ELB improved by 0.0111673
iteration 112
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.437
ELB improved by 0.0111248
iteration 113
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.426
ELB improved by 0.0110902
iteration 114
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.415
ELB improved by 0.0110635
iteration 115
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.404
ELB improved by 0.0110448
iteration 116
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.393
ELB improved by 0.0110341
iteration 117
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.382
ELB improved by 0.0110317
iteration 118
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.371
ELB improved by 0.0110377
iteration 119
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.36
ELB improved by 0.0110524
iteration 120
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.349
ELB improved by 0.0110761
iteration 121
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.338
ELB improved by 0.0111093
iteration 122
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.327
ELB improved by 0.0111526
iteration 123
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.316
ELB improved by 0.0112068
iteration 124
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.304
ELB improved by 0.011273
iteration 125
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.293
ELB improved by 0.0113525
iteration 126
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.281
ELB improved by 0.0114471
iteration 127
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.27
ELB improved by 0.0115592
iteration 128
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.258
ELB improved by 0.0116919
iteration 129
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.246
ELB improved by 0.0118491
iteration 130
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.234
ELB improved by 0.0120361
iteration 131
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.222
ELB improved by 0.0122597
iteration 132
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.21
ELB improved by 0.012529
iteration 133
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.197
ELB improved by 0.0128556
iteration 134
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.183
ELB improved by 0.0132555
iteration 135
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.17
ELB improved by 0.0137494
iteration 136
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.155
ELB improved by 0.0143654
iteration 137
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.14
ELB improved by 0.0151409
iteration 138
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.124
ELB improved by 0.0161255
iteration 139
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.107
ELB improved by 0.0173841
iteration 140
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.088
ELB improved by 0.018998
iteration 141
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.067
ELB improved by 0.0210607
iteration 142
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.043
ELB improved by 0.0236599
iteration 143
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.016
ELB improved by 0.0268309
iteration 144
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.986
ELB improved by 0.0304666
iteration 145
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.951
ELB improved by 0.0341965
iteration 146
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.914
ELB improved by 0.037327
iteration 147
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.875
ELB improved by 0.0390264
iteration 148
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.836
ELB improved by 0.0388142
iteration 149
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.799
ELB improved by 0.0369736
iteration 150
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.765
ELB improved by 0.0343693
iteration 151
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.733
ELB improved by 0.0318287
iteration 152
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.703
ELB improved by 0.0297549
iteration 153
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.675
ELB improved by 0.0281851
iteration 154
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.648
ELB improved by 0.0270085
iteration 155
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.622
ELB improved by 0.0261069
iteration 156
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.597
ELB improved by 0.0253982
iteration 157
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.572
ELB improved by 0.0248332
iteration 158
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.547
ELB improved by 0.0243804
iteration 159
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.523
ELB improved by 0.0240136
iteration 160
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.5
ELB improved by 0.0237028
iteration 161
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.476
ELB improved by 0.0234092
iteration 162
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.453
ELB improved by 0.0230846
iteration 163
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.431
ELB improved by 0.0226762
iteration 164
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.408
ELB improved by 0.0221382
iteration 165
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.387
ELB improved by 0.021446
iteration 166
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.366
ELB improved by 0.0206092
iteration 167
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.347
ELB improved by 0.0196758
iteration 168
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.328
ELB improved by 0.0187258
iteration 169
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.31
ELB improved by 0.0178571
iteration 170
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.293
ELB improved by 0.0171725
iteration 171
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.276
ELB improved by 0.0167742
iteration 172
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.259
ELB improved by 0.0167676
iteration 173
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.242
ELB improved by 0.0172732
iteration 174
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.224
ELB improved by 0.0184417
iteration 175
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.203
ELB improved by 0.0204666
iteration 176
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.18
ELB improved by 0.0235827
iteration 177
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.152
ELB improved by 0.028026
iteration 178
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.118
ELB improved by 0.033916
iteration 179
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.077
ELB improved by 0.0410256
iteration 180
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.028
ELB improved by 0.048505
iteration 181
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.973
ELB improved by 0.054864
iteration 182
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.915
ELB improved by 0.0585927
iteration 183
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.856
ELB improved by 0.0591123
iteration 184
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.799
ELB improved by 0.0569455
iteration 185
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.746
ELB improved by 0.0528948
iteration 186
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.698
ELB improved by 0.0474216
iteration 187
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.658
ELB improved by 0.0408124
iteration 188
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.624
ELB improved by 0.0335428
iteration 189
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.598
ELB improved by 0.0263108
iteration 190
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.578
ELB improved by 0.01979
iteration 191
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.563
ELB improved by 0.0144004
iteration 192
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.553
ELB improved by 0.0102526
iteration 193
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.546
ELB improved by 0.00723134
ELB converged
iteration 1
Updating parameters of variational distributions...
Calculating ELB..
ELB=-866.717
ELB improved by inf
iteration 2
Updating parameters of variational distributions...
Calculating ELB..
ELB=-579.155
ELB improved by 287.563
iteration 3
Updating parameters of variational distributions...
Calculating ELB..
ELB=-516.54
ELB improved by 62.6146
iteration 4
Updating parameters of variational distributions...
Calculating ELB..
ELB=-471.7
ELB improved by 44.8399
iteration 5
Updating parameters of variational distributions...
Calculating ELB..
ELB=-450.543
ELB improved by 21.1567
iteration 6
Updating parameters of variational distributions...
Calculating ELB..
ELB=-442.384
ELB improved by 8.15935
iteration 7
Updating parameters of variational distributions...
Calculating ELB..
ELB=-437.396
ELB improved by 4.98821
iteration 8
Updating parameters of variational distributions...
Calculating ELB..
ELB=-433.274
ELB improved by 4.12214
iteration 9
Updating parameters of variational distributions...
Calculating ELB..
ELB=-429.212
ELB improved by 4.06153
iteration 10
Updating parameters of variational distributions...
Calculating ELB..
ELB=-424.747
ELB improved by 4.46529
iteration 11
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.574
ELB improved by 5.17324
iteration 12
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.604
ELB improved by 5.96943
iteration 13
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.262
ELB improved by 6.34192
iteration 14
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.535
ELB improved by 5.72731
iteration 15
Updating parameters of variational distributions...
Calculating ELB..
ELB=-397.229
ELB improved by 4.30569
iteration 16
Updating parameters of variational distributions...
Calculating ELB..
ELB=-394.379
ELB improved by 2.85015
iteration 17
Updating parameters of variational distributions...
Calculating ELB..
ELB=-392.551
ELB improved by 1.82857
iteration 18
Updating parameters of variational distributions...
Calculating ELB..
ELB=-391.328
ELB improved by 1.22228
iteration 19
Updating parameters of variational distributions...
Calculating ELB..
ELB=-390.452
ELB improved by 0.876544
iteration 20
Updating parameters of variational distributions...
Calculating ELB..
ELB=-389.77
ELB improved by 0.681398
iteration 21
Updating parameters of variational distributions...
Calculating ELB..
ELB=-389.197
ELB improved by 0.57341
iteration 22
Updating parameters of variational distributions...
Calculating ELB..
ELB=-388.68
ELB improved by 0.516573
iteration 23
Updating parameters of variational distributions...
Calculating ELB..
ELB=-388.189
ELB improved by 0.49124
iteration 24
Updating parameters of variational distributions...
Calculating ELB..
ELB=-387.702
ELB improved by 0.48689
iteration 25
Updating parameters of variational distributions...
Calculating ELB..
ELB=-387.205
ELB improved by 0.497663
iteration 26
Updating parameters of variational distributions...
Calculating ELB..
ELB=-386.685
ELB improved by 0.519937
iteration 27
Updating parameters of variational distributions...
Calculating ELB..
ELB=-386.134
ELB improved by 0.551144
iteration 28
Updating parameters of variational distributions...
Calculating ELB..
ELB=-385.544
ELB improved by 0.589215
iteration 29
Updating parameters of variational distributions...
Calculating ELB..
ELB=-384.912
ELB improved by 0.632322
iteration 30
Updating parameters of variational distributions...
Calculating ELB..
ELB=-384.233
ELB improved by 0.678628
iteration 31
Updating parameters of variational distributions...
Calculating ELB..
ELB=-383.508
ELB improved by 0.725827
iteration 32
Updating parameters of variational distributions...
Calculating ELB..
ELB=-382.737
ELB improved by 0.770397
iteration 33
Updating parameters of variational distributions...
Calculating ELB..
ELB=-381.93
ELB improved by 0.806869
iteration 34
Updating parameters of variational distributions...
Calculating ELB..
ELB=-381.102
ELB improved by 0.82779
iteration 35
Updating parameters of variational distributions...
Calculating ELB..
ELB=-380.277
ELB improved by 0.825097
iteration 36
Updating parameters of variational distributions...
Calculating ELB..
ELB=-379.484
ELB improved by 0.79301
iteration 37
Updating parameters of variational distributions...
Calculating ELB..
ELB=-378.753
ELB improved by 0.731192
iteration 38
Updating parameters of variational distributions...
Calculating ELB..
ELB=-378.107
ELB improved by 0.64592
iteration 39
Updating parameters of variational distributions...
Calculating ELB..
ELB=-377.559
ELB improved by 0.54796
iteration 40
Updating parameters of variational distributions...
Calculating ELB..
ELB=-377.111
ELB improved by 0.448592
iteration 41
Updating parameters of variational distributions...
Calculating ELB..
ELB=-376.754
ELB improved by 0.356618
iteration 42
Updating parameters of variational distributions...
Calculating ELB..
ELB=-376.477
ELB improved by 0.277422
iteration 43
Updating parameters of variational distributions...
Calculating ELB..
ELB=-376.263
ELB improved by 0.213208
iteration 44
Updating parameters of variational distributions...
Calculating ELB..
ELB=-376.1
ELB improved by 0.163602
iteration 45
Updating parameters of variational distributions...
Calculating ELB..
ELB=-375.973
ELB improved by 0.126549
iteration 46
Updating parameters of variational distributions...
Calculating ELB..
ELB=-375.874
ELB improved by 0.0993323
iteration 47
Updating parameters of variational distributions...
Calculating ELB..
ELB=-375.795
ELB improved by 0.0793627
iteration 48
Updating parameters of variational distributions...
Calculating ELB..
ELB=-375.73
ELB improved by 0.0645606
iteration 49
Updating parameters of variational distributions...
Calculating ELB..
ELB=-375.677
ELB improved by 0.0534076
iteration 50
Updating parameters of variational distributions...
Calculating ELB..
ELB=-375.632
ELB improved by 0.0448455
iteration 51
Updating parameters of variational distributions...
Calculating ELB..
ELB=-375.594
ELB improved by 0.0381471
iteration 52
Updating parameters of variational distributions...
Calculating ELB..
ELB=-375.561
ELB improved by 0.0328114
iteration 53
Updating parameters of variational distributions...
Calculating ELB..
ELB=-375.532
ELB improved by 0.0284905
iteration 54
Updating parameters of variational distributions...
Calculating ELB..
ELB=-375.507
ELB improved by 0.0249399
iteration 55
Updating parameters of variational distributions...
Calculating ELB..
ELB=-375.485
ELB improved by 0.0219859
iteration 56
Updating parameters of variational distributions...
Calculating ELB..
ELB=-375.466
ELB improved by 0.0195031
iteration 57
Updating parameters of variational distributions...
Calculating ELB..
ELB=-375.449
ELB improved by 0.0173988
iteration 58
Updating parameters of variational distributions...
Calculating ELB..
ELB=-375.433
ELB improved by 0.0156032
iteration 59
Updating parameters of variational distributions...
Calculating ELB..
ELB=-375.419
ELB improved by 0.0140625
iteration 60
Updating parameters of variational distributions...
Calculating ELB..
ELB=-375.406
ELB improved by 0.0127339
iteration 61
Updating parameters of variational distributions...
Calculating ELB..
ELB=-375.395
ELB improved by 0.0115833
iteration 62
Updating parameters of variational distributions...
Calculating ELB..
ELB=-375.384
ELB improved by 0.0105828
iteration 63
Updating parameters of variational distributions...
Calculating ELB..
ELB=-375.374
ELB improved by 0.00970941
ELB converged
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 24 ]
>
> proc.time()
user system elapsed
2.297 0.219 2.503
graper.Rcheck/graper-Ex.timings
| name | user | system | elapsed | |
| coef.graper | 0.052 | 0.021 | 0.073 | |
| getPIPs | 0.050 | 0.012 | 0.062 | |
| graper | 0.080 | 0.019 | 0.099 | |
| makeExampleData | 0.008 | 0.002 | 0.010 | |
| makeExampleDataWithUnequalGroups | 0.011 | 0.001 | 0.012 | |
| plotELBO | 0.307 | 0.024 | 0.332 | |
| plotGroupPenalties | 1.036 | 0.062 | 1.098 | |
| plotPosterior | 0.606 | 0.023 | 0.629 | |
| predict.graper | 2.051 | 0.060 | 2.111 | |
| print.graper | 0.047 | 0.014 | 0.061 | |