Britta Velten
| Snapshot Date: 2026-02-22 13:40 -0500 (Sun, 22 Feb 2026) |
| git_url: https://git.bioconductor.org/packages/graper |
| git_branch: devel |
| git_last_commit: 95474d7 |
| git_last_commit_date: 2025-10-29 10:49:21 -0500 (Wed, 29 Oct 2025) |
| Back to Build/check report for BioC 3.23: simplified long |
|
This page was generated on 2026-02-23 11:32 -0500 (Mon, 23 Feb 2026).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 24.04.3 LTS) | x86_64 | R Under development (unstable) (2026-01-15 r89304) -- "Unsuffered Consequences" | 4871 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 926/2354 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| graper 1.27.0 (landing page) Britta Velten
| nebbiolo1 | Linux (Ubuntu 24.04.3 LTS) / x86_64 | OK | OK | OK | | ||||||||
| See other builds for graper in R Universe. | ||||||||||||||
|
To the developers/maintainers of the graper package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/graper.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: graper |
| Version: 1.27.0 |
| Command: /home/biocbuild/bbs-3.23-bioc/R/bin/R CMD check --install=check:graper.install-out.txt --library=/home/biocbuild/bbs-3.23-bioc/R/site-library --timings graper_1.27.0.tar.gz |
| StartedAt: 2026-02-23 00:41:07 -0500 (Mon, 23 Feb 2026) |
| EndedAt: 2026-02-23 00:42:41 -0500 (Mon, 23 Feb 2026) |
| EllapsedTime: 94.2 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: graper.Rcheck |
| Warnings: 0 |
##############################################################################
##############################################################################
###
### Running command:
###
### /home/biocbuild/bbs-3.23-bioc/R/bin/R CMD check --install=check:graper.install-out.txt --library=/home/biocbuild/bbs-3.23-bioc/R/site-library --timings graper_1.27.0.tar.gz
###
##############################################################################
##############################################################################
* using log directory ‘/home/biocbuild/bbs-3.23-bioc/meat/graper.Rcheck’
* using R Under development (unstable) (2026-01-15 r89304)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
gcc (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
GNU Fortran (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
* running under: Ubuntu 24.04.3 LTS
* using session charset: UTF-8
* checking for file ‘graper/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘graper’ version ‘1.27.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘graper’ can be installed ... OK
* used C++ compiler: ‘g++ (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0’
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... NOTE
checkRd: (-1) predict.graper.Rd:19-21: Lost braces in \itemize; meant \describe ?
checkRd: (-1) predict.graper.Rd:22: Lost braces in \itemize; meant \describe ?
checkRd: (-1) predict.graper.Rd:23-24: Lost braces in \itemize; meant \describe ?
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking compilation flags in Makevars ... OK
* checking for GNU extensions in Makefiles ... OK
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking use of PKG_*FLAGS in Makefiles ... OK
* checking compiled code ... INFO
Note: information on .o files is not available
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
Running ‘testthat.R’
OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... OK
* checking PDF version of manual ... OK
* DONE
Status: 1 NOTE
See
‘/home/biocbuild/bbs-3.23-bioc/meat/graper.Rcheck/00check.log’
for details.
graper.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.23-bioc/R/bin/R CMD INSTALL graper ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.23-bioc/R/site-library’ * installing *source* package ‘graper’ ... ** this is package ‘graper’ version ‘1.27.0’ ** using staged installation ** libs using C++ compiler: ‘g++ (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0’ g++ -std=gnu++17 -I"/home/biocbuild/bbs-3.23-bioc/R/include" -DNDEBUG -I'/home/biocbuild/bbs-3.23-bioc/R/site-library/Rcpp/include' -I'/home/biocbuild/bbs-3.23-bioc/R/site-library/RcppArmadillo/include' -I'/home/biocbuild/bbs-3.23-bioc/R/site-library/BH/include' -I/usr/local/include -fpic -g -O2 -Wall -Werror=format-security -c RcppExports.cpp -o RcppExports.o g++ -std=gnu++17 -I"/home/biocbuild/bbs-3.23-bioc/R/include" -DNDEBUG -I'/home/biocbuild/bbs-3.23-bioc/R/site-library/Rcpp/include' -I'/home/biocbuild/bbs-3.23-bioc/R/site-library/RcppArmadillo/include' -I'/home/biocbuild/bbs-3.23-bioc/R/site-library/BH/include' -I/usr/local/include -fpic -g -O2 -Wall -Werror=format-security -c fit_graper.cpp -o fit_graper.o g++ -std=gnu++17 -shared -L/home/biocbuild/bbs-3.23-bioc/R/lib -L/usr/local/lib -o graper.so RcppExports.o fit_graper.o -llapack -L/home/biocbuild/bbs-3.23-bioc/R/lib -lRblas -lgfortran -lm -lquadmath -L/home/biocbuild/bbs-3.23-bioc/R/lib -lR installing to /home/biocbuild/bbs-3.23-bioc/R/site-library/00LOCK-graper/00new/graper/libs ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (graper)
graper.Rcheck/tests/testthat.Rout
R Under development (unstable) (2026-01-15 r89304) -- "Unsuffered Consequences"
Copyright (C) 2026 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> library(testthat)
> library(graper)
>
> test_check("graper")
iteration 1
Updating parameters of variational distributions...
Calculating ELB..
ELB=-823.107
ELB improved by inf
iteration 2
Updating parameters of variational distributions...
Calculating ELB..
ELB=-565.829
ELB improved by 257.278
iteration 3
Updating parameters of variational distributions...
Calculating ELB..
ELB=-502.599
ELB improved by 63.2301
iteration 4
Updating parameters of variational distributions...
Calculating ELB..
ELB=-462.8
ELB improved by 39.799
iteration 5
Updating parameters of variational distributions...
Calculating ELB..
ELB=-442.023
ELB improved by 20.7768
iteration 6
Updating parameters of variational distributions...
Calculating ELB..
ELB=-431.704
ELB improved by 10.3195
iteration 7
Updating parameters of variational distributions...
Calculating ELB..
ELB=-426.459
ELB improved by 5.24495
iteration 8
Updating parameters of variational distributions...
Calculating ELB..
ELB=-423.194
ELB improved by 3.26431
iteration 9
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.692
ELB improved by 2.50255
iteration 10
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.488
ELB improved by 2.20426
iteration 11
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.411
ELB improved by 2.07682
iteration 12
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.409
ELB improved by 2.00189
iteration 13
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.475
ELB improved by 1.93412
iteration 14
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.62
ELB improved by 1.85517
iteration 15
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.866
ELB improved by 1.75366
iteration 16
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.249
ELB improved by 1.61657
iteration 17
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.818
ELB improved by 1.43104
iteration 18
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.62
ELB improved by 1.19827
iteration 19
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.676
ELB improved by 0.94443
iteration 20
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.967
ELB improved by 0.70843
iteration 21
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.449
ELB improved by 0.518006
iteration 22
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.069
ELB improved by 0.379736
iteration 23
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.784
ELB improved by 0.285541
iteration 24
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.561
ELB improved by 0.222944
iteration 25
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.38
ELB improved by 0.18108
iteration 26
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.228
ELB improved by 0.152315
iteration 27
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.096
ELB improved by 0.131798
iteration 28
Updating parameters of variational distributions...
Calculating ELB..
ELB=-400.979
ELB improved by 0.11658
iteration 29
Updating parameters of variational distributions...
Calculating ELB..
ELB=-400.874
ELB improved by 0.104882
iteration 30
Updating parameters of variational distributions...
Calculating ELB..
ELB=-400.779
ELB improved by 0.0956247
iteration 31
Updating parameters of variational distributions...
Calculating ELB..
ELB=-400.691
ELB improved by 0.0881321
iteration 32
Updating parameters of variational distributions...
Calculating ELB..
ELB=-400.609
ELB improved by 0.0819691
iteration 33
Updating parameters of variational distributions...
Calculating ELB..
ELB=-400.532
ELB improved by 0.0768431
iteration 34
Updating parameters of variational distributions...
Calculating ELB..
ELB=-400.459
ELB improved by 0.0725493
iteration 35
Updating parameters of variational distributions...
Calculating ELB..
ELB=-400.39
ELB improved by 0.0689383
iteration 36
Updating parameters of variational distributions...
Calculating ELB..
ELB=-400.324
ELB improved by 0.0658972
iteration 37
Updating parameters of variational distributions...
Calculating ELB..
ELB=-400.261
ELB improved by 0.0633377
iteration 38
Updating parameters of variational distributions...
Calculating ELB..
ELB=-400.2
ELB improved by 0.0611887
iteration 39
Updating parameters of variational distributions...
Calculating ELB..
ELB=-400.14
ELB improved by 0.0593917
iteration 40
Updating parameters of variational distributions...
Calculating ELB..
ELB=-400.083
ELB improved by 0.0578973
iteration 41
Updating parameters of variational distributions...
Calculating ELB..
ELB=-400.026
ELB improved by 0.0566631
iteration 42
Updating parameters of variational distributions...
Calculating ELB..
ELB=-399.97
ELB improved by 0.0556518
iteration 43
Updating parameters of variational distributions...
Calculating ELB..
ELB=-399.915
ELB improved by 0.0548302
iteration 44
Updating parameters of variational distributions...
Calculating ELB..
ELB=-399.861
ELB improved by 0.0541684
iteration 45
Updating parameters of variational distributions...
Calculating ELB..
ELB=-399.808
ELB improved by 0.0536389
iteration 46
Updating parameters of variational distributions...
Calculating ELB..
ELB=-399.754
ELB improved by 0.0532162
iteration 47
Updating parameters of variational distributions...
Calculating ELB..
ELB=-399.702
ELB improved by 0.0528769
iteration 48
Updating parameters of variational distributions...
Calculating ELB..
ELB=-399.649
ELB improved by 0.0525993
iteration 49
Updating parameters of variational distributions...
Calculating ELB..
ELB=-399.597
ELB improved by 0.0523636
iteration 50
Updating parameters of variational distributions...
Calculating ELB..
ELB=-399.544
ELB improved by 0.052152
iteration 51
Updating parameters of variational distributions...
Calculating ELB..
ELB=-399.492
ELB improved by 0.0519491
iteration 52
Updating parameters of variational distributions...
Calculating ELB..
ELB=-399.441
ELB improved by 0.0517421
iteration 53
Updating parameters of variational distributions...
Calculating ELB..
ELB=-399.389
ELB improved by 0.0515212
iteration 54
Updating parameters of variational distributions...
Calculating ELB..
ELB=-399.338
ELB improved by 0.0512799
iteration 55
Updating parameters of variational distributions...
Calculating ELB..
ELB=-399.287
ELB improved by 0.0510153
iteration 56
Updating parameters of variational distributions...
Calculating ELB..
ELB=-399.236
ELB improved by 0.0507278
iteration 57
Updating parameters of variational distributions...
Calculating ELB..
ELB=-399.186
ELB improved by 0.0504218
iteration 58
Updating parameters of variational distributions...
Calculating ELB..
ELB=-399.136
ELB improved by 0.050105
iteration 59
Updating parameters of variational distributions...
Calculating ELB..
ELB=-399.086
ELB improved by 0.0497881
iteration 60
Updating parameters of variational distributions...
Calculating ELB..
ELB=-399.036
ELB improved by 0.0494851
iteration 61
Updating parameters of variational distributions...
Calculating ELB..
ELB=-398.987
ELB improved by 0.0492121
iteration 62
Updating parameters of variational distributions...
Calculating ELB..
ELB=-398.938
ELB improved by 0.0489876
iteration 63
Updating parameters of variational distributions...
Calculating ELB..
ELB=-398.889
ELB improved by 0.0488317
iteration 64
Updating parameters of variational distributions...
Calculating ELB..
ELB=-398.841
ELB improved by 0.0487662
iteration 65
Updating parameters of variational distributions...
Calculating ELB..
ELB=-398.792
ELB improved by 0.0488145
iteration 66
Updating parameters of variational distributions...
Calculating ELB..
ELB=-398.743
ELB improved by 0.0490018
iteration 67
Updating parameters of variational distributions...
Calculating ELB..
ELB=-398.693
ELB improved by 0.0493555
iteration 68
Updating parameters of variational distributions...
Calculating ELB..
ELB=-398.643
ELB improved by 0.0499058
iteration 69
Updating parameters of variational distributions...
Calculating ELB..
ELB=-398.593
ELB improved by 0.0506867
iteration 70
Updating parameters of variational distributions...
Calculating ELB..
ELB=-398.541
ELB improved by 0.051738
iteration 71
Updating parameters of variational distributions...
Calculating ELB..
ELB=-398.488
ELB improved by 0.0531063
iteration 72
Updating parameters of variational distributions...
Calculating ELB..
ELB=-398.433
ELB improved by 0.0548483
iteration 73
Updating parameters of variational distributions...
Calculating ELB..
ELB=-398.376
ELB improved by 0.0570342
iteration 74
Updating parameters of variational distributions...
Calculating ELB..
ELB=-398.316
ELB improved by 0.0597522
iteration 75
Updating parameters of variational distributions...
Calculating ELB..
ELB=-398.253
ELB improved by 0.0631148
iteration 76
Updating parameters of variational distributions...
Calculating ELB..
ELB=-398.186
ELB improved by 0.0672677
iteration 77
Updating parameters of variational distributions...
Calculating ELB..
ELB=-398.114
ELB improved by 0.072402
iteration 78
Updating parameters of variational distributions...
Calculating ELB..
ELB=-398.035
ELB improved by 0.0787698
iteration 79
Updating parameters of variational distributions...
Calculating ELB..
ELB=-397.948
ELB improved by 0.0867066
iteration 80
Updating parameters of variational distributions...
Calculating ELB..
ELB=-397.851
ELB improved by 0.0966591
iteration 81
Updating parameters of variational distributions...
Calculating ELB..
ELB=-397.742
ELB improved by 0.109216
iteration 82
Updating parameters of variational distributions...
Calculating ELB..
ELB=-397.617
ELB improved by 0.125135
iteration 83
Updating parameters of variational distributions...
Calculating ELB..
ELB=-397.472
ELB improved by 0.14533
iteration 84
Updating parameters of variational distributions...
Calculating ELB..
ELB=-397.301
ELB improved by 0.170766
iteration 85
Updating parameters of variational distributions...
Calculating ELB..
ELB=-397.099
ELB improved by 0.202154
iteration 86
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.859
ELB improved by 0.239367
iteration 87
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.579
ELB improved by 0.280728
iteration 88
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.256
ELB improved by 0.322666
iteration 89
Updating parameters of variational distributions...
Calculating ELB..
ELB=-395.896
ELB improved by 0.360293
iteration 90
Updating parameters of variational distributions...
Calculating ELB..
ELB=-395.507
ELB improved by 0.388644
iteration 91
Updating parameters of variational distributions...
Calculating ELB..
ELB=-395.103
ELB improved by 0.40383
iteration 92
Updating parameters of variational distributions...
Calculating ELB..
ELB=-394.699
ELB improved by 0.403904
iteration 93
Updating parameters of variational distributions...
Calculating ELB..
ELB=-394.31
ELB improved by 0.389554
iteration 94
Updating parameters of variational distributions...
Calculating ELB..
ELB=-393.946
ELB improved by 0.364321
iteration 95
Updating parameters of variational distributions...
Calculating ELB..
ELB=-393.612
ELB improved by 0.333954
iteration 96
Updating parameters of variational distributions...
Calculating ELB..
ELB=-393.306
ELB improved by 0.305287
iteration 97
Updating parameters of variational distributions...
Calculating ELB..
ELB=-393.021
ELB improved by 0.285564
iteration 98
Updating parameters of variational distributions...
Calculating ELB..
ELB=-392.738
ELB improved by 0.282713
iteration 99
Updating parameters of variational distributions...
Calculating ELB..
ELB=-392.433
ELB improved by 0.305055
iteration 100
Updating parameters of variational distributions...
Calculating ELB..
ELB=-392.08
ELB improved by 0.353219
iteration 101
Updating parameters of variational distributions...
Calculating ELB..
ELB=-391.681
ELB improved by 0.399007
iteration 102
Updating parameters of variational distributions...
Calculating ELB..
ELB=-391.282
ELB improved by 0.398239
iteration 103
Updating parameters of variational distributions...
Calculating ELB..
ELB=-390.934
ELB improved by 0.348613
iteration 104
Updating parameters of variational distributions...
Calculating ELB..
ELB=-390.665
ELB improved by 0.268961
iteration 105
Updating parameters of variational distributions...
Calculating ELB..
ELB=-390.481
ELB improved by 0.18363
iteration 106
Updating parameters of variational distributions...
Calculating ELB..
ELB=-390.36
ELB improved by 0.121174
iteration 107
Updating parameters of variational distributions...
Calculating ELB..
ELB=-390.274
ELB improved by 0.0859794
iteration 108
Updating parameters of variational distributions...
Calculating ELB..
ELB=-390.206
ELB improved by 0.0681555
iteration 109
Updating parameters of variational distributions...
Calculating ELB..
ELB=-390.146
ELB improved by 0.0596594
iteration 110
Updating parameters of variational distributions...
Calculating ELB..
ELB=-390.09
ELB improved by 0.0562805
iteration 111
Updating parameters of variational distributions...
Calculating ELB..
ELB=-390.035
ELB improved by 0.0552872
iteration 112
Updating parameters of variational distributions...
Calculating ELB..
ELB=-389.981
ELB improved by 0.053963
iteration 113
Updating parameters of variational distributions...
Calculating ELB..
ELB=-389.931
ELB improved by 0.0501563
iteration 114
Updating parameters of variational distributions...
Calculating ELB..
ELB=-389.887
ELB improved by 0.0439056
iteration 115
Updating parameters of variational distributions...
Calculating ELB..
ELB=-389.849
ELB improved by 0.0373291
iteration 116
Updating parameters of variational distributions...
Calculating ELB..
ELB=-389.817
ELB improved by 0.0324247
iteration 117
Updating parameters of variational distributions...
Calculating ELB..
ELB=-389.787
ELB improved by 0.029638
iteration 118
Updating parameters of variational distributions...
Calculating ELB..
ELB=-389.759
ELB improved by 0.0281466
iteration 119
Updating parameters of variational distributions...
Calculating ELB..
ELB=-389.732
ELB improved by 0.0266728
iteration 120
Updating parameters of variational distributions...
Calculating ELB..
ELB=-389.708
ELB improved by 0.0242009
iteration 121
Updating parameters of variational distributions...
Calculating ELB..
ELB=-389.688
ELB improved by 0.0205027
iteration 122
Updating parameters of variational distributions...
Calculating ELB..
ELB=-389.672
ELB improved by 0.0161745
iteration 123
Updating parameters of variational distributions...
Calculating ELB..
ELB=-389.66
ELB improved by 0.0120974
iteration 124
Updating parameters of variational distributions...
Calculating ELB..
ELB=-389.651
ELB improved by 0.00885018
ELB converged
iteration 1
Updating parameters of variational distributions...
Calculating ELB..
ELB=-894.194
ELB improved by inf
iteration 2
Updating parameters of variational distributions...
Calculating ELB..
ELB=-570.207
ELB improved by 323.987
iteration 3
Updating parameters of variational distributions...
Calculating ELB..
ELB=-513.77
ELB improved by 56.4372
iteration 4
Updating parameters of variational distributions...
Calculating ELB..
ELB=-481.981
ELB improved by 31.7889
iteration 5
Updating parameters of variational distributions...
Calculating ELB..
ELB=-468.58
ELB improved by 13.4008
iteration 6
Updating parameters of variational distributions...
Calculating ELB..
ELB=-462.757
ELB improved by 5.82291
iteration 7
Updating parameters of variational distributions...
Calculating ELB..
ELB=-459.176
ELB improved by 3.58104
iteration 8
Updating parameters of variational distributions...
Calculating ELB..
ELB=-456.447
ELB improved by 2.72909
iteration 9
Updating parameters of variational distributions...
Calculating ELB..
ELB=-454.154
ELB improved by 2.29325
iteration 10
Updating parameters of variational distributions...
Calculating ELB..
ELB=-452.134
ELB improved by 2.01969
iteration 11
Updating parameters of variational distributions...
Calculating ELB..
ELB=-450.332
ELB improved by 1.80176
iteration 12
Updating parameters of variational distributions...
Calculating ELB..
ELB=-448.731
ELB improved by 1.60095
iteration 13
Updating parameters of variational distributions...
Calculating ELB..
ELB=-447.321
ELB improved by 1.40978
iteration 14
Updating parameters of variational distributions...
Calculating ELB..
ELB=-446.088
ELB improved by 1.23319
iteration 15
Updating parameters of variational distributions...
Calculating ELB..
ELB=-445.009
ELB improved by 1.0792
iteration 16
Updating parameters of variational distributions...
Calculating ELB..
ELB=-444.056
ELB improved by 0.952793
iteration 17
Updating parameters of variational distributions...
Calculating ELB..
ELB=-443.204
ELB improved by 0.85233
iteration 18
Updating parameters of variational distributions...
Calculating ELB..
ELB=-442.435
ELB improved by 0.769124
iteration 19
Updating parameters of variational distributions...
Calculating ELB..
ELB=-441.746
ELB improved by 0.689213
iteration 20
Updating parameters of variational distributions...
Calculating ELB..
ELB=-441.145
ELB improved by 0.600473
iteration 21
Updating parameters of variational distributions...
Calculating ELB..
ELB=-440.642
ELB improved by 0.503132
iteration 22
Updating parameters of variational distributions...
Calculating ELB..
ELB=-440.234
ELB improved by 0.408202
iteration 23
Updating parameters of variational distributions...
Calculating ELB..
ELB=-439.908
ELB improved by 0.32596
iteration 24
Updating parameters of variational distributions...
Calculating ELB..
ELB=-439.647
ELB improved by 0.260464
iteration 25
Updating parameters of variational distributions...
Calculating ELB..
ELB=-439.436
ELB improved by 0.21094
iteration 26
Updating parameters of variational distributions...
Calculating ELB..
ELB=-439.262
ELB improved by 0.174417
iteration 27
Updating parameters of variational distributions...
Calculating ELB..
ELB=-439.115
ELB improved by 0.147533
iteration 28
Updating parameters of variational distributions...
Calculating ELB..
ELB=-438.987
ELB improved by 0.127425
iteration 29
Updating parameters of variational distributions...
Calculating ELB..
ELB=-438.875
ELB improved by 0.11198
iteration 30
Updating parameters of variational distributions...
Calculating ELB..
ELB=-438.775
ELB improved by 0.099759
iteration 31
Updating parameters of variational distributions...
Calculating ELB..
ELB=-438.686
ELB improved by 0.0898205
iteration 32
Updating parameters of variational distributions...
Calculating ELB..
ELB=-438.604
ELB improved by 0.081553
iteration 33
Updating parameters of variational distributions...
Calculating ELB..
ELB=-438.529
ELB improved by 0.0745547
iteration 34
Updating parameters of variational distributions...
Calculating ELB..
ELB=-438.461
ELB improved by 0.0685538
iteration 35
Updating parameters of variational distributions...
Calculating ELB..
ELB=-438.398
ELB improved by 0.0633601
iteration 36
Updating parameters of variational distributions...
Calculating ELB..
ELB=-438.339
ELB improved by 0.058835
iteration 37
Updating parameters of variational distributions...
Calculating ELB..
ELB=-438.284
ELB improved by 0.0548739
iteration 38
Updating parameters of variational distributions...
Calculating ELB..
ELB=-438.232
ELB improved by 0.051396
iteration 39
Updating parameters of variational distributions...
Calculating ELB..
ELB=-438.184
ELB improved by 0.048337
iteration 40
Updating parameters of variational distributions...
Calculating ELB..
ELB=-438.138
ELB improved by 0.0456447
iteration 41
Updating parameters of variational distributions...
Calculating ELB..
ELB=-438.095
ELB improved by 0.0432766
iteration 42
Updating parameters of variational distributions...
Calculating ELB..
ELB=-438.054
ELB improved by 0.0411974
iteration 43
Updating parameters of variational distributions...
Calculating ELB..
ELB=-438.015
ELB improved by 0.0393779
iteration 44
Updating parameters of variational distributions...
Calculating ELB..
ELB=-437.977
ELB improved by 0.0377936
iteration 45
Updating parameters of variational distributions...
Calculating ELB..
ELB=-437.94
ELB improved by 0.0364242
iteration 46
Updating parameters of variational distributions...
Calculating ELB..
ELB=-437.905
ELB improved by 0.0352525
iteration 47
Updating parameters of variational distributions...
Calculating ELB..
ELB=-437.871
ELB improved by 0.0342647
iteration 48
Updating parameters of variational distributions...
Calculating ELB..
ELB=-437.837
ELB improved by 0.0334492
iteration 49
Updating parameters of variational distributions...
Calculating ELB..
ELB=-437.805
ELB improved by 0.0327969
iteration 50
Updating parameters of variational distributions...
Calculating ELB..
ELB=-437.772
ELB improved by 0.0323007
iteration 51
Updating parameters of variational distributions...
Calculating ELB..
ELB=-437.74
ELB improved by 0.0319553
iteration 52
Updating parameters of variational distributions...
Calculating ELB..
ELB=-437.709
ELB improved by 0.0317574
iteration 53
Updating parameters of variational distributions...
Calculating ELB..
ELB=-437.677
ELB improved by 0.0317052
iteration 54
Updating parameters of variational distributions...
Calculating ELB..
ELB=-437.645
ELB improved by 0.0317989
iteration 55
Updating parameters of variational distributions...
Calculating ELB..
ELB=-437.613
ELB improved by 0.0320403
iteration 56
Updating parameters of variational distributions...
Calculating ELB..
ELB=-437.581
ELB improved by 0.0324329
iteration 57
Updating parameters of variational distributions...
Calculating ELB..
ELB=-437.548
ELB improved by 0.0329823
iteration 58
Updating parameters of variational distributions...
Calculating ELB..
ELB=-437.514
ELB improved by 0.0336962
iteration 59
Updating parameters of variational distributions...
Calculating ELB..
ELB=-437.479
ELB improved by 0.0345846
iteration 60
Updating parameters of variational distributions...
Calculating ELB..
ELB=-437.444
ELB improved by 0.0356599
iteration 61
Updating parameters of variational distributions...
Calculating ELB..
ELB=-437.407
ELB improved by 0.0369378
iteration 62
Updating parameters of variational distributions...
Calculating ELB..
ELB=-437.368
ELB improved by 0.0384374
iteration 63
Updating parameters of variational distributions...
Calculating ELB..
ELB=-437.328
ELB improved by 0.0401817
iteration 64
Updating parameters of variational distributions...
Calculating ELB..
ELB=-437.286
ELB improved by 0.0421987
iteration 65
Updating parameters of variational distributions...
Calculating ELB..
ELB=-437.241
ELB improved by 0.0445221
iteration 66
Updating parameters of variational distributions...
Calculating ELB..
ELB=-437.194
ELB improved by 0.0471926
iteration 67
Updating parameters of variational distributions...
Calculating ELB..
ELB=-437.144
ELB improved by 0.0502591
iteration 68
Updating parameters of variational distributions...
Calculating ELB..
ELB=-437.09
ELB improved by 0.0537811
iteration 69
Updating parameters of variational distributions...
Calculating ELB..
ELB=-437.032
ELB improved by 0.0578303
iteration 70
Updating parameters of variational distributions...
Calculating ELB..
ELB=-436.97
ELB improved by 0.0624937
iteration 71
Updating parameters of variational distributions...
Calculating ELB..
ELB=-436.902
ELB improved by 0.0678772
iteration 72
Updating parameters of variational distributions...
Calculating ELB..
ELB=-436.828
ELB improved by 0.0741087
iteration 73
Updating parameters of variational distributions...
Calculating ELB..
ELB=-436.747
ELB improved by 0.0813428
iteration 74
Updating parameters of variational distributions...
Calculating ELB..
ELB=-436.657
ELB improved by 0.0897646
iteration 75
Updating parameters of variational distributions...
Calculating ELB..
ELB=-436.557
ELB improved by 0.0995918
iteration 76
Updating parameters of variational distributions...
Calculating ELB..
ELB=-436.446
ELB improved by 0.111074
iteration 77
Updating parameters of variational distributions...
Calculating ELB..
ELB=-436.322
ELB improved by 0.124481
iteration 78
Updating parameters of variational distributions...
Calculating ELB..
ELB=-436.182
ELB improved by 0.140087
iteration 79
Updating parameters of variational distributions...
Calculating ELB..
ELB=-436.023
ELB improved by 0.158122
iteration 80
Updating parameters of variational distributions...
Calculating ELB..
ELB=-435.845
ELB improved by 0.178711
iteration 81
Updating parameters of variational distributions...
Calculating ELB..
ELB=-435.643
ELB improved by 0.201799
iteration 82
Updating parameters of variational distributions...
Calculating ELB..
ELB=-435.416
ELB improved by 0.227065
iteration 83
Updating parameters of variational distributions...
Calculating ELB..
ELB=-435.162
ELB improved by 0.253886
iteration 84
Updating parameters of variational distributions...
Calculating ELB..
ELB=-434.881
ELB improved by 0.281327
iteration 85
Updating parameters of variational distributions...
Calculating ELB..
ELB=-434.572
ELB improved by 0.30818
iteration 86
Updating parameters of variational distributions...
Calculating ELB..
ELB=-434.239
ELB improved by 0.333001
iteration 87
Updating parameters of variational distributions...
Calculating ELB..
ELB=-433.885
ELB improved by 0.354196
iteration 88
Updating parameters of variational distributions...
Calculating ELB..
ELB=-433.515
ELB improved by 0.370177
iteration 89
Updating parameters of variational distributions...
Calculating ELB..
ELB=-433.135
ELB improved by 0.379665
iteration 90
Updating parameters of variational distributions...
Calculating ELB..
ELB=-432.753
ELB improved by 0.38212
iteration 91
Updating parameters of variational distributions...
Calculating ELB..
ELB=-432.375
ELB improved by 0.378288
iteration 92
Updating parameters of variational distributions...
Calculating ELB..
ELB=-432.004
ELB improved by 0.370835
iteration 93
Updating parameters of variational distributions...
Calculating ELB..
ELB=-431.639
ELB improved by 0.364973
iteration 94
Updating parameters of variational distributions...
Calculating ELB..
ELB=-431.271
ELB improved by 0.368006
iteration 95
Updating parameters of variational distributions...
Calculating ELB..
ELB=-430.888
ELB improved by 0.382991
iteration 96
Updating parameters of variational distributions...
Calculating ELB..
ELB=-430.495
ELB improved by 0.392795
iteration 97
Updating parameters of variational distributions...
Calculating ELB..
ELB=-430.131
ELB improved by 0.364679
iteration 98
Updating parameters of variational distributions...
Calculating ELB..
ELB=-429.83
ELB improved by 0.301041
iteration 99
Updating parameters of variational distributions...
Calculating ELB..
ELB=-429.593
ELB improved by 0.23653
iteration 100
Updating parameters of variational distributions...
Calculating ELB..
ELB=-429.406
ELB improved by 0.18742
iteration 101
Updating parameters of variational distributions...
Calculating ELB..
ELB=-429.253
ELB improved by 0.152315
iteration 102
Updating parameters of variational distributions...
Calculating ELB..
ELB=-429.127
ELB improved by 0.126836
iteration 103
Updating parameters of variational distributions...
Calculating ELB..
ELB=-429.019
ELB improved by 0.107518
iteration 104
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.927
ELB improved by 0.0920346
iteration 105
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.848
ELB improved by 0.0789906
iteration 106
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.78
ELB improved by 0.0676704
iteration 107
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.723
ELB improved by 0.0577847
iteration 108
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.673
ELB improved by 0.0492468
iteration 109
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.631
ELB improved by 0.0420172
iteration 110
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.595
ELB improved by 0.0360277
iteration 111
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.564
ELB improved by 0.0311665
iteration 112
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.537
ELB improved by 0.0272938
iteration 113
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.513
ELB improved by 0.0242659
iteration 114
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.491
ELB improved by 0.0219557
iteration 115
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.47
ELB improved by 0.0202652
iteration 116
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.451
ELB improved by 0.0191324
iteration 117
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.433
ELB improved by 0.0185342
iteration 118
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.414
ELB improved by 0.0184873
iteration 119
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.395
ELB improved by 0.0190475
iteration 120
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.375
ELB improved by 0.0202984
iteration 121
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.353
ELB improved by 0.022316
iteration 122
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.327
ELB improved by 0.0250818
iteration 123
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.299
ELB improved by 0.0283264
iteration 124
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.268
ELB improved by 0.0313585
iteration 125
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.235
ELB improved by 0.033093
iteration 126
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.202
ELB improved by 0.0325334
iteration 127
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.173
ELB improved by 0.0295131
iteration 128
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.148
ELB improved by 0.0249215
iteration 129
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.128
ELB improved by 0.0200707
iteration 130
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.112
ELB improved by 0.0159062
iteration 131
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.099
ELB improved by 0.0127593
iteration 132
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.088
ELB improved by 0.0105484
iteration 133
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.079
ELB improved by 0.00904432
ELB converged
iteration 1
Updating parameters of variational distributions...
Calculating ELB..
ELB=-839.124
ELB improved by inf
iteration 2
Updating parameters of variational distributions...
Calculating ELB..
ELB=-568.413
ELB improved by 270.711
iteration 3
Updating parameters of variational distributions...
Calculating ELB..
ELB=-512.978
ELB improved by 55.435
iteration 4
Updating parameters of variational distributions...
Calculating ELB..
ELB=-477.595
ELB improved by 35.3826
iteration 5
Updating parameters of variational distributions...
Calculating ELB..
ELB=-459.94
ELB improved by 17.6555
iteration 6
Updating parameters of variational distributions...
Calculating ELB..
ELB=-451.904
ELB improved by 8.03562
iteration 7
Updating parameters of variational distributions...
Calculating ELB..
ELB=-447.552
ELB improved by 4.35159
iteration 8
Updating parameters of variational distributions...
Calculating ELB..
ELB=-444.146
ELB improved by 3.40671
iteration 9
Updating parameters of variational distributions...
Calculating ELB..
ELB=-440.908
ELB improved by 3.2377
iteration 10
Updating parameters of variational distributions...
Calculating ELB..
ELB=-437.614
ELB improved by 3.29416
iteration 11
Updating parameters of variational distributions...
Calculating ELB..
ELB=-434.28
ELB improved by 3.33338
iteration 12
Updating parameters of variational distributions...
Calculating ELB..
ELB=-431.078
ELB improved by 3.2026
iteration 13
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.225
ELB improved by 2.85259
iteration 14
Updating parameters of variational distributions...
Calculating ELB..
ELB=-425.91
ELB improved by 2.31494
iteration 15
Updating parameters of variational distributions...
Calculating ELB..
ELB=-424.205
ELB improved by 1.70496
iteration 16
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.991
ELB improved by 1.21429
iteration 17
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.073
ELB improved by 0.917509
iteration 18
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.302
ELB improved by 0.771235
iteration 19
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.585
ELB improved by 0.717016
iteration 20
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.869
ELB improved by 0.716581
iteration 21
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.119
ELB improved by 0.75004
iteration 22
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.31
ELB improved by 0.808704
iteration 23
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.42
ELB improved by 0.890026
iteration 24
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.425
ELB improved by 0.99459
iteration 25
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.301
ELB improved by 1.12391
iteration 26
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.023
ELB improved by 1.278
iteration 27
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.572
ELB improved by 1.45154
iteration 28
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.946
ELB improved by 1.62589
iteration 29
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.191
ELB improved by 1.7553
iteration 30
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.418
ELB improved by 1.77304
iteration 31
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.763
ELB improved by 1.6544
iteration 32
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.311
ELB improved by 1.4524
iteration 33
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.069
ELB improved by 1.24211
iteration 34
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.996
ELB improved by 1.07301
iteration 35
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.056
ELB improved by 0.940159
iteration 36
Updating parameters of variational distributions...
Calculating ELB..
ELB=-400.303
ELB improved by 0.75224
iteration 37
Updating parameters of variational distributions...
Calculating ELB..
ELB=-399.797
ELB improved by 0.506362
iteration 38
Updating parameters of variational distributions...
Calculating ELB..
ELB=-399.474
ELB improved by 0.322805
iteration 39
Updating parameters of variational distributions...
Calculating ELB..
ELB=-399.255
ELB improved by 0.219621
iteration 40
Updating parameters of variational distributions...
Calculating ELB..
ELB=-399.092
ELB improved by 0.162605
iteration 41
Updating parameters of variational distributions...
Calculating ELB..
ELB=-398.963
ELB improved by 0.12873
iteration 42
Updating parameters of variational distributions...
Calculating ELB..
ELB=-398.857
ELB improved by 0.106606
iteration 43
Updating parameters of variational distributions...
Calculating ELB..
ELB=-398.766
ELB improved by 0.0906684
iteration 44
Updating parameters of variational distributions...
Calculating ELB..
ELB=-398.687
ELB improved by 0.0784131
iteration 45
Updating parameters of variational distributions...
Calculating ELB..
ELB=-398.618
ELB improved by 0.0690325
iteration 46
Updating parameters of variational distributions...
Calculating ELB..
ELB=-398.556
ELB improved by 0.0623494
iteration 47
Updating parameters of variational distributions...
Calculating ELB..
ELB=-398.498
ELB improved by 0.0580234
iteration 48
Updating parameters of variational distributions...
Calculating ELB..
ELB=-398.443
ELB improved by 0.0552704
iteration 49
Updating parameters of variational distributions...
Calculating ELB..
ELB=-398.39
ELB improved by 0.0530335
iteration 50
Updating parameters of variational distributions...
Calculating ELB..
ELB=-398.339
ELB improved by 0.0503891
iteration 51
Updating parameters of variational distributions...
Calculating ELB..
ELB=-398.292
ELB improved by 0.0469398
iteration 52
Updating parameters of variational distributions...
Calculating ELB..
ELB=-398.25
ELB improved by 0.0428945
iteration 53
Updating parameters of variational distributions...
Calculating ELB..
ELB=-398.211
ELB improved by 0.0387682
iteration 54
Updating parameters of variational distributions...
Calculating ELB..
ELB=-398.176
ELB improved by 0.0350088
iteration 55
Updating parameters of variational distributions...
Calculating ELB..
ELB=-398.144
ELB improved by 0.0318349
iteration 56
Updating parameters of variational distributions...
Calculating ELB..
ELB=-398.115
ELB improved by 0.0292734
iteration 57
Updating parameters of variational distributions...
Calculating ELB..
ELB=-398.087
ELB improved by 0.0272499
iteration 58
Updating parameters of variational distributions...
Calculating ELB..
ELB=-398.062
ELB improved by 0.0256524
iteration 59
Updating parameters of variational distributions...
Calculating ELB..
ELB=-398.037
ELB improved by 0.0243593
iteration 60
Updating parameters of variational distributions...
Calculating ELB..
ELB=-398.014
ELB improved by 0.0232492
iteration 61
Updating parameters of variational distributions...
Calculating ELB..
ELB=-397.992
ELB improved by 0.022208
iteration 62
Updating parameters of variational distributions...
Calculating ELB..
ELB=-397.971
ELB improved by 0.0211395
iteration 63
Updating parameters of variational distributions...
Calculating ELB..
ELB=-397.951
ELB improved by 0.0199816
iteration 64
Updating parameters of variational distributions...
Calculating ELB..
ELB=-397.932
ELB improved by 0.0187206
iteration 65
Updating parameters of variational distributions...
Calculating ELB..
ELB=-397.915
ELB improved by 0.0173941
iteration 66
Updating parameters of variational distributions...
Calculating ELB..
ELB=-397.899
ELB improved by 0.0160782
iteration 67
Updating parameters of variational distributions...
Calculating ELB..
ELB=-397.884
ELB improved by 0.0148612
iteration 68
Updating parameters of variational distributions...
Calculating ELB..
ELB=-397.87
ELB improved by 0.0138181
iteration 69
Updating parameters of variational distributions...
Calculating ELB..
ELB=-397.857
ELB improved by 0.0129928
iteration 70
Updating parameters of variational distributions...
Calculating ELB..
ELB=-397.845
ELB improved by 0.0123931
iteration 71
Updating parameters of variational distributions...
Calculating ELB..
ELB=-397.833
ELB improved by 0.0119936
iteration 72
Updating parameters of variational distributions...
Calculating ELB..
ELB=-397.821
ELB improved by 0.0117408
iteration 73
Updating parameters of variational distributions...
Calculating ELB..
ELB=-397.809
ELB improved by 0.0115579
iteration 74
Updating parameters of variational distributions...
Calculating ELB..
ELB=-397.798
ELB improved by 0.0113511
iteration 75
Updating parameters of variational distributions...
Calculating ELB..
ELB=-397.787
ELB improved by 0.0110223
iteration 76
Updating parameters of variational distributions...
Calculating ELB..
ELB=-397.776
ELB improved by 0.0104915
iteration 77
Updating parameters of variational distributions...
Calculating ELB..
ELB=-397.767
ELB improved by 0.00972398
ELB converged
iteration 1
Updating parameters of variational distributions...
Calculating ELB..
ELB=-893.381
ELB improved by inf
iteration 2
Updating parameters of variational distributions...
Calculating ELB..
ELB=-590.91
ELB improved by 302.471
iteration 3
Updating parameters of variational distributions...
Calculating ELB..
ELB=-530.881
ELB improved by 60.0297
iteration 4
Updating parameters of variational distributions...
Calculating ELB..
ELB=-489.153
ELB improved by 41.7279
iteration 5
Updating parameters of variational distributions...
Calculating ELB..
ELB=-469.408
ELB improved by 19.7447
iteration 6
Updating parameters of variational distributions...
Calculating ELB..
ELB=-461.568
ELB improved by 7.84009
iteration 7
Updating parameters of variational distributions...
Calculating ELB..
ELB=-457.676
ELB improved by 3.89192
iteration 8
Updating parameters of variational distributions...
Calculating ELB..
ELB=-455.06
ELB improved by 2.61601
iteration 9
Updating parameters of variational distributions...
Calculating ELB..
ELB=-452.91
ELB improved by 2.15043
iteration 10
Updating parameters of variational distributions...
Calculating ELB..
ELB=-450.926
ELB improved by 1.98395
iteration 11
Updating parameters of variational distributions...
Calculating ELB..
ELB=-448.991
ELB improved by 1.9351
iteration 12
Updating parameters of variational distributions...
Calculating ELB..
ELB=-447.065
ELB improved by 1.92587
iteration 13
Updating parameters of variational distributions...
Calculating ELB..
ELB=-445.157
ELB improved by 1.90729
iteration 14
Updating parameters of variational distributions...
Calculating ELB..
ELB=-443.319
ELB improved by 1.83895
iteration 15
Updating parameters of variational distributions...
Calculating ELB..
ELB=-441.625
ELB improved by 1.69363
iteration 16
Updating parameters of variational distributions...
Calculating ELB..
ELB=-440.154
ELB improved by 1.47058
iteration 17
Updating parameters of variational distributions...
Calculating ELB..
ELB=-438.96
ELB improved by 1.19438
iteration 18
Updating parameters of variational distributions...
Calculating ELB..
ELB=-438.056
ELB improved by 0.904375
iteration 19
Updating parameters of variational distributions...
Calculating ELB..
ELB=-437.408
ELB improved by 0.647709
iteration 20
Updating parameters of variational distributions...
Calculating ELB..
ELB=-436.955
ELB improved by 0.453235
iteration 21
Updating parameters of variational distributions...
Calculating ELB..
ELB=-436.634
ELB improved by 0.320129
iteration 22
Updating parameters of variational distributions...
Calculating ELB..
ELB=-436.401
ELB improved by 0.233746
iteration 23
Updating parameters of variational distributions...
Calculating ELB..
ELB=-436.222
ELB improved by 0.178996
iteration 24
Updating parameters of variational distributions...
Calculating ELB..
ELB=-436.077
ELB improved by 0.144417
iteration 25
Updating parameters of variational distributions...
Calculating ELB..
ELB=-435.955
ELB improved by 0.122277
iteration 26
Updating parameters of variational distributions...
Calculating ELB..
ELB=-435.847
ELB improved by 0.107694
iteration 27
Updating parameters of variational distributions...
Calculating ELB..
ELB=-435.75
ELB improved by 0.0977302
iteration 28
Updating parameters of variational distributions...
Calculating ELB..
ELB=-435.659
ELB improved by 0.0906544
iteration 29
Updating parameters of variational distributions...
Calculating ELB..
ELB=-435.574
ELB improved by 0.0854526
iteration 30
Updating parameters of variational distributions...
Calculating ELB..
ELB=-435.492
ELB improved by 0.081519
iteration 31
Updating parameters of variational distributions...
Calculating ELB..
ELB=-435.414
ELB improved by 0.0784779
iteration 32
Updating parameters of variational distributions...
Calculating ELB..
ELB=-435.337
ELB improved by 0.0760846
iteration 33
Updating parameters of variational distributions...
Calculating ELB..
ELB=-435.263
ELB improved by 0.07417
iteration 34
Updating parameters of variational distributions...
Calculating ELB..
ELB=-435.191
ELB improved by 0.0726113
iteration 35
Updating parameters of variational distributions...
Calculating ELB..
ELB=-435.119
ELB improved by 0.0713144
iteration 36
Updating parameters of variational distributions...
Calculating ELB..
ELB=-435.049
ELB improved by 0.0702054
iteration 37
Updating parameters of variational distributions...
Calculating ELB..
ELB=-434.98
ELB improved by 0.0692246
iteration 38
Updating parameters of variational distributions...
Calculating ELB..
ELB=-434.912
ELB improved by 0.0683239
iteration 39
Updating parameters of variational distributions...
Calculating ELB..
ELB=-434.844
ELB improved by 0.0674651
iteration 40
Updating parameters of variational distributions...
Calculating ELB..
ELB=-434.777
ELB improved by 0.0666186
iteration 41
Updating parameters of variational distributions...
Calculating ELB..
ELB=-434.712
ELB improved by 0.065763
iteration 42
Updating parameters of variational distributions...
Calculating ELB..
ELB=-434.647
ELB improved by 0.0648849
iteration 43
Updating parameters of variational distributions...
Calculating ELB..
ELB=-434.583
ELB improved by 0.0639784
iteration 44
Updating parameters of variational distributions...
Calculating ELB..
ELB=-434.52
ELB improved by 0.063045
iteration 45
Updating parameters of variational distributions...
Calculating ELB..
ELB=-434.458
ELB improved by 0.0620931
iteration 46
Updating parameters of variational distributions...
Calculating ELB..
ELB=-434.397
ELB improved by 0.0611378
iteration 47
Updating parameters of variational distributions...
Calculating ELB..
ELB=-434.336
ELB improved by 0.0602007
iteration 48
Updating parameters of variational distributions...
Calculating ELB..
ELB=-434.277
ELB improved by 0.0593099
iteration 49
Updating parameters of variational distributions...
Calculating ELB..
ELB=-434.219
ELB improved by 0.0585001
iteration 50
Updating parameters of variational distributions...
Calculating ELB..
ELB=-434.161
ELB improved by 0.0578137
iteration 51
Updating parameters of variational distributions...
Calculating ELB..
ELB=-434.103
ELB improved by 0.0573029
iteration 52
Updating parameters of variational distributions...
Calculating ELB..
ELB=-434.046
ELB improved by 0.0570321
iteration 53
Updating parameters of variational distributions...
Calculating ELB..
ELB=-433.989
ELB improved by 0.0570835
iteration 54
Updating parameters of variational distributions...
Calculating ELB..
ELB=-433.932
ELB improved by 0.0575639
iteration 55
Updating parameters of variational distributions...
Calculating ELB..
ELB=-433.873
ELB improved by 0.0586145
iteration 56
Updating parameters of variational distributions...
Calculating ELB..
ELB=-433.813
ELB improved by 0.0604232
iteration 57
Updating parameters of variational distributions...
Calculating ELB..
ELB=-433.75
ELB improved by 0.0632345
iteration 58
Updating parameters of variational distributions...
Calculating ELB..
ELB=-433.682
ELB improved by 0.0673473
iteration 59
Updating parameters of variational distributions...
Calculating ELB..
ELB=-433.609
ELB improved by 0.0730738
iteration 60
Updating parameters of variational distributions...
Calculating ELB..
ELB=-433.528
ELB improved by 0.080616
iteration 61
Updating parameters of variational distributions...
Calculating ELB..
ELB=-433.439
ELB improved by 0.0898291
iteration 62
Updating parameters of variational distributions...
Calculating ELB..
ELB=-433.339
ELB improved by 0.0999551
iteration 63
Updating parameters of variational distributions...
Calculating ELB..
ELB=-433.229
ELB improved by 0.109646
iteration 64
Updating parameters of variational distributions...
Calculating ELB..
ELB=-433.111
ELB improved by 0.117593
iteration 65
Updating parameters of variational distributions...
Calculating ELB..
ELB=-432.988
ELB improved by 0.123407
iteration 66
Updating parameters of variational distributions...
Calculating ELB..
ELB=-432.86
ELB improved by 0.127795
iteration 67
Updating parameters of variational distributions...
Calculating ELB..
ELB=-432.728
ELB improved by 0.131888
iteration 68
Updating parameters of variational distributions...
Calculating ELB..
ELB=-432.592
ELB improved by 0.136567
iteration 69
Updating parameters of variational distributions...
Calculating ELB..
ELB=-432.45
ELB improved by 0.142294
iteration 70
Updating parameters of variational distributions...
Calculating ELB..
ELB=-432.3
ELB improved by 0.149223
iteration 71
Updating parameters of variational distributions...
Calculating ELB..
ELB=-432.143
ELB improved by 0.157332
iteration 72
Updating parameters of variational distributions...
Calculating ELB..
ELB=-431.976
ELB improved by 0.166488
iteration 73
Updating parameters of variational distributions...
Calculating ELB..
ELB=-431.8
ELB improved by 0.176476
iteration 74
Updating parameters of variational distributions...
Calculating ELB..
ELB=-431.613
ELB improved by 0.187018
iteration 75
Updating parameters of variational distributions...
Calculating ELB..
ELB=-431.415
ELB improved by 0.197791
iteration 76
Updating parameters of variational distributions...
Calculating ELB..
ELB=-431.207
ELB improved by 0.208478
iteration 77
Updating parameters of variational distributions...
Calculating ELB..
ELB=-430.988
ELB improved by 0.21886
iteration 78
Updating parameters of variational distributions...
Calculating ELB..
ELB=-430.759
ELB improved by 0.228973
iteration 79
Updating parameters of variational distributions...
Calculating ELB..
ELB=-430.519
ELB improved by 0.239392
iteration 80
Updating parameters of variational distributions...
Calculating ELB..
ELB=-430.268
ELB improved by 0.251658
iteration 81
Updating parameters of variational distributions...
Calculating ELB..
ELB=-429.999
ELB improved by 0.268856
iteration 82
Updating parameters of variational distributions...
Calculating ELB..
ELB=-429.703
ELB improved by 0.295763
iteration 83
Updating parameters of variational distributions...
Calculating ELB..
ELB=-429.367
ELB improved by 0.336022
iteration 84
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.986
ELB improved by 0.381289
iteration 85
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.585
ELB improved by 0.400997
iteration 86
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.216
ELB improved by 0.369274
iteration 87
Updating parameters of variational distributions...
Calculating ELB..
ELB=-427.913
ELB improved by 0.302423
iteration 88
Updating parameters of variational distributions...
Calculating ELB..
ELB=-427.68
ELB improved by 0.233588
iteration 89
Updating parameters of variational distributions...
Calculating ELB..
ELB=-427.501
ELB improved by 0.17813
iteration 90
Updating parameters of variational distributions...
Calculating ELB..
ELB=-427.365
ELB improved by 0.136478
iteration 91
Updating parameters of variational distributions...
Calculating ELB..
ELB=-427.26
ELB improved by 0.105417
iteration 92
Updating parameters of variational distributions...
Calculating ELB..
ELB=-427.177
ELB improved by 0.0821241
iteration 93
Updating parameters of variational distributions...
Calculating ELB..
ELB=-427.113
ELB improved by 0.064564
iteration 94
Updating parameters of variational distributions...
Calculating ELB..
ELB=-427.062
ELB improved by 0.0512738
iteration 95
Updating parameters of variational distributions...
Calculating ELB..
ELB=-427.02
ELB improved by 0.041178
iteration 96
Updating parameters of variational distributions...
Calculating ELB..
ELB=-426.987
ELB improved by 0.0334759
iteration 97
Updating parameters of variational distributions...
Calculating ELB..
ELB=-426.959
ELB improved by 0.0275693
iteration 98
Updating parameters of variational distributions...
Calculating ELB..
ELB=-426.936
ELB improved by 0.0230119
iteration 99
Updating parameters of variational distributions...
Calculating ELB..
ELB=-426.917
ELB improved by 0.0194714
iteration 100
Updating parameters of variational distributions...
Calculating ELB..
ELB=-426.9
ELB improved by 0.0167001
iteration 101
Updating parameters of variational distributions...
Calculating ELB..
ELB=-426.886
ELB improved by 0.0145129
iteration 102
Updating parameters of variational distributions...
Calculating ELB..
ELB=-426.873
ELB improved by 0.0127711
iteration 103
Updating parameters of variational distributions...
Calculating ELB..
ELB=-426.862
ELB improved by 0.0113702
iteration 104
Updating parameters of variational distributions...
Calculating ELB..
ELB=-426.851
ELB improved by 0.0102317
iteration 105
Updating parameters of variational distributions...
Calculating ELB..
ELB=-426.842
ELB improved by 0.00929597
ELB converged
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 24 ]
>
> proc.time()
user system elapsed
2.498 0.211 2.692
graper.Rcheck/graper-Ex.timings
| name | user | system | elapsed | |
| coef.graper | 0.057 | 0.014 | 0.072 | |
| getPIPs | 0.050 | 0.012 | 0.062 | |
| graper | 0.082 | 0.017 | 0.099 | |
| makeExampleData | 0.010 | 0.000 | 0.011 | |
| makeExampleDataWithUnequalGroups | 0.011 | 0.002 | 0.013 | |
| plotELBO | 0.343 | 0.022 | 0.365 | |
| plotGroupPenalties | 1.178 | 0.048 | 1.226 | |
| plotPosterior | 0.657 | 0.021 | 0.678 | |
| predict.graper | 2.066 | 0.066 | 2.132 | |
| print.graper | 0.050 | 0.012 | 0.062 | |