| Back to Build/check report for BioC 3.23: simplified long |
|
This page was generated on 2025-11-06 11:32 -0500 (Thu, 06 Nov 2025).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 24.04.3 LTS) | x86_64 | R Under development (unstable) (2025-10-20 r88955) -- "Unsuffered Consequences" | 4818 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 620/2323 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| drugTargetInteractions 1.19.0 (landing page) Thomas Girke
| nebbiolo1 | Linux (Ubuntu 24.04.3 LTS) / x86_64 | OK | OK | OK | |||||||||
|
To the developers/maintainers of the drugTargetInteractions package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/drugTargetInteractions.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: drugTargetInteractions |
| Version: 1.19.0 |
| Command: /home/biocbuild/bbs-3.23-bioc/R/bin/R CMD check --install=check:drugTargetInteractions.install-out.txt --library=/home/biocbuild/bbs-3.23-bioc/R/site-library --timings drugTargetInteractions_1.19.0.tar.gz |
| StartedAt: 2025-11-05 23:07:51 -0500 (Wed, 05 Nov 2025) |
| EndedAt: 2025-11-05 23:14:35 -0500 (Wed, 05 Nov 2025) |
| EllapsedTime: 403.6 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: drugTargetInteractions.Rcheck |
| Warnings: 0 |
##############################################################################
##############################################################################
###
### Running command:
###
### /home/biocbuild/bbs-3.23-bioc/R/bin/R CMD check --install=check:drugTargetInteractions.install-out.txt --library=/home/biocbuild/bbs-3.23-bioc/R/site-library --timings drugTargetInteractions_1.19.0.tar.gz
###
##############################################################################
##############################################################################
* using log directory ‘/home/biocbuild/bbs-3.23-bioc/meat/drugTargetInteractions.Rcheck’
* using R Under development (unstable) (2025-10-20 r88955)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
gcc (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
GNU Fortran (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
* running under: Ubuntu 24.04.3 LTS
* using session charset: UTF-8
* checking for file ‘drugTargetInteractions/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘drugTargetInteractions’ version ‘1.19.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘drugTargetInteractions’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
.getCacheFile: no visible binding for global variable 'create_time'
getParalogs: no visible global function definition for 'setNames'
Undefined global functions or variables:
create_time setNames
Consider adding
importFrom("stats", "setNames")
to your NAMESPACE file.
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... NOTE
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
getUniprotIDs.Rd: UniProt.ws
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
drugTargetAnnotTable 39.387 2.257 41.655
processDrugage 29.507 2.099 32.103
transformTTD 3.569 0.634 7.672
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... OK
* checking PDF version of manual ... OK
* DONE
Status: 2 NOTEs
See
‘/home/biocbuild/bbs-3.23-bioc/meat/drugTargetInteractions.Rcheck/00check.log’
for details.
drugTargetInteractions.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.23-bioc/R/bin/R CMD INSTALL drugTargetInteractions ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.23-bioc/R/site-library’ * installing *source* package ‘drugTargetInteractions’ ... ** this is package ‘drugTargetInteractions’ version ‘1.19.0’ ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (drugTargetInteractions)
drugTargetInteractions.Rcheck/drugTargetInteractions-Ex.timings
| name | user | system | elapsed | |
| cmpIdMapping | 0.000 | 0.000 | 0.001 | |
| downloadChemblDb | 0 | 0 | 0 | |
| downloadUniChem | 0.819 | 0.096 | 1.517 | |
| drugTargetAnnot | 0.017 | 0.000 | 0.019 | |
| drugTargetAnnotTable | 39.387 | 2.257 | 41.655 | |
| drugTargetBioactivity | 0.069 | 0.004 | 0.073 | |
| genConfig | 0 | 0 | 0 | |
| getDrugTarget | 0.017 | 0.000 | 0.017 | |
| getParalogs | 0 | 0 | 0 | |
| getSymEnsUp | 1.060 | 0.200 | 1.267 | |
| getUniprotIDs | 0.000 | 0.001 | 0.001 | |
| processDrugage | 29.507 | 2.099 | 32.103 | |
| runDrugTarget_Annot_Bioassay | 0.630 | 0.042 | 0.672 | |
| transformTTD | 3.569 | 0.634 | 7.672 | |