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This page was generated on 2025-08-15 12:06 -0400 (Fri, 15 Aug 2025).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 24.04.3 LTS)x86_644.5.1 (2025-06-13) -- "Great Square Root" 4818
palomino8Windows Server 2022 Datacenterx644.5.1 (2025-06-13 ucrt) -- "Great Square Root" 4554
lconwaymacOS 12.7.1 Montereyx86_644.5.1 (2025-06-13) -- "Great Square Root" 4595
kjohnson3macOS 13.7.7 Venturaarm644.5.1 Patched (2025-06-14 r88325) -- "Great Square Root" 4537
taishanLinux (openEuler 24.03 LTS)aarch644.5.0 (2025-04-11) -- "How About a Twenty-Six" 4535
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 205/2317HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
biodbChebi 1.15.1  (landing page)
Pierrick Roger
Snapshot Date: 2025-08-14 13:45 -0400 (Thu, 14 Aug 2025)
git_url: https://git.bioconductor.org/packages/biodbChebi
git_branch: devel
git_last_commit: b5e26aa
git_last_commit_date: 2025-06-24 10:11:00 -0400 (Tue, 24 Jun 2025)
nebbiolo2Linux (Ubuntu 24.04.3 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
palomino8Windows Server 2022 Datacenter / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
lconwaymacOS 12.7.1 Monterey / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published
kjohnson3macOS 13.7.7 Ventura / arm64  OK    OK    OK    OK  UNNEEDED, same version is already published
taishanLinux (openEuler 24.03 LTS) / aarch64  OK    ERROR  skipped

CHECK results for biodbChebi on palomino8

To the developers/maintainers of the biodbChebi package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/biodbChebi.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: biodbChebi
Version: 1.15.1
Command: F:\biocbuild\bbs-3.22-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:biodbChebi.install-out.txt --library=F:\biocbuild\bbs-3.22-bioc\R\library --no-vignettes --timings biodbChebi_1.15.1.tar.gz
StartedAt: 2025-08-15 01:01:03 -0400 (Fri, 15 Aug 2025)
EndedAt: 2025-08-15 01:06:12 -0400 (Fri, 15 Aug 2025)
EllapsedTime: 309.5 seconds
RetCode: 0
Status:   OK  
CheckDir: biodbChebi.Rcheck
Warnings: 0

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   F:\biocbuild\bbs-3.22-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:biodbChebi.install-out.txt --library=F:\biocbuild\bbs-3.22-bioc\R\library --no-vignettes --timings biodbChebi_1.15.1.tar.gz
###
##############################################################################
##############################################################################


* using log directory 'F:/biocbuild/bbs-3.22-bioc/meat/biodbChebi.Rcheck'
* using R version 4.5.1 (2025-06-13 ucrt)
* using platform: x86_64-w64-mingw32
* R was compiled by
    gcc.exe (GCC) 14.2.0
    GNU Fortran (GCC) 14.2.0
* running under: Windows Server 2022 x64 (build 20348)
* using session charset: UTF-8
* using option '--no-vignettes'
* checking for file 'biodbChebi/DESCRIPTION' ... OK
* this is package 'biodbChebi' version '1.15.1'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'biodbChebi' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in 'vignettes' ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
          user system elapsed
ChebiConn 3.81   2.73  131.44
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
  Running 'testthat.R'
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK

Installation output

biodbChebi.Rcheck/00install.out

##############################################################################
##############################################################################
###
### Running command:
###
###   F:\biocbuild\bbs-3.22-bioc\R\bin\R.exe CMD INSTALL biodbChebi
###
##############################################################################
##############################################################################


* installing to library 'F:/biocbuild/bbs-3.22-bioc/R/library'
* installing *source* package 'biodbChebi' ...
** this is package 'biodbChebi' version '1.15.1'
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (biodbChebi)

Tests output

biodbChebi.Rcheck/tests/testthat.Rout


R version 4.5.1 (2025-06-13 ucrt) -- "Great Square Root"
Copyright (C) 2025 The R Foundation for Statistical Computing
Platform: x86_64-w64-mingw32/x64

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> # vi: fdm=marker
> # Script needed to run testthat automatically from ‘R CMD check’. See
> # testthat::test_dir documentation.
> library(testthat)
> library(biodbChebi)
> Sys.setenv(TESTTHAT_REPORTER="summary")
> Sys.setenv(BIODB_LOG_DST="console")
> test_check("biodbChebi")
biodb.INFO [2025-08-15 01:05:25.507][biodb::testContext]
biodb.INFO [2025-08-15 01:05:25.511][biodb::testContext] ********************************************************************************
biodb.INFO [2025-08-15 01:05:25.513][biodb::testContext] Test context - Generic tests
biodb.INFO [2025-08-15 01:05:25.514][biodb::testContext] ********************************************************************************
biodb.INFO [2025-08-15 01:05:25.516][biodb::testContext]
biodb.INFO [2025-08-15 01:05:25.536][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.17.1.
biodb.DEBUG[2025-08-15 01:05:25.541][self$loadDefinitions] Load definitions from file "F:/biocbuild/bbs-3.22-bioc/R/library/biodb/definitions.yml".
biodb.DEBUG[2025-08-15 01:05:25.561][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-08-15 01:05:25.563][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2025-08-15 01:05:25.565][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2025-08-15 01:05:25.578][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-15 01:05:25.579][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-15 01:05:25.581][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-15 01:05:25.583][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2025-08-15 01:05:25.602][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2025-08-15 01:05:25.604][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-15 01:05:25.605][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-15 01:05:25.606][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-15 01:05:25.608][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2025-08-15 01:05:25.610][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2025-08-15 01:05:25.611][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-15 01:05:25.612][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-15 01:05:25.614][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-15 01:05:25.615][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2025-08-15 01:05:25.616][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2025-08-15 01:05:25.618][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2025-08-15 01:05:25.619][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-15 01:05:25.620][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-15 01:05:25.621][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-15 01:05:25.622][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2025-08-15 01:05:25.624][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2025-08-15 01:05:25.625][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2025-08-15 01:05:25.626][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-15 01:05:25.627][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-15 01:05:25.629][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-15 01:05:25.630][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2025-08-15 01:05:25.633][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2025-08-15 01:05:25.634][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-15 01:05:25.636][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-15 01:05:25.637][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-15 01:05:25.638][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2025-08-15 01:05:25.639][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2025-08-15 01:05:25.641][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2025-08-15 01:05:25.642][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-15 01:05:25.643][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-15 01:05:25.645][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-15 01:05:25.646][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2025-08-15 01:05:25.647][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2025-08-15 01:05:25.649][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-15 01:05:25.650][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-15 01:05:25.651][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-15 01:05:25.652][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2025-08-15 01:05:25.653][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2025-08-15 01:05:25.655][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2025-08-15 01:05:25.657][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-15 01:05:25.658][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-15 01:05:25.659][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-15 01:05:25.660][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2025-08-15 01:05:25.662][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2025-08-15 01:05:25.663][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2025-08-15 01:05:25.665][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2025-08-15 01:05:25.666][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2025-08-15 01:05:25.668][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2025-08-15 01:05:25.669][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-15 01:05:25.671][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-15 01:05:25.672][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-15 01:05:25.674][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2025-08-15 01:05:25.675][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2025-08-15 01:05:25.677][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-15 01:05:25.679][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-15 01:05:25.680][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-15 01:05:25.682][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2025-08-15 01:05:25.684][self$set] Set key entries.sep to "|".
biodb.DEBUG[2025-08-15 01:05:25.686][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-15 01:05:25.688][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-15 01:05:25.690][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-15 01:05:25.692][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2025-08-15 01:05:25.694][self$set] Set key offline to FALSE.
biodb.DEBUG[2025-08-15 01:05:25.695][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-15 01:05:25.697][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-15 01:05:25.698][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-15 01:05:25.700][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2025-08-15 01:05:25.702][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2025-08-15 01:05:25.703][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2025-08-15 01:05:25.704][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-15 01:05:25.706][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-15 01:05:25.707][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-15 01:05:25.709][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2025-08-15 01:05:25.710][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2025-08-15 01:05:25.715][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2025-08-15 01:05:25.716][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-15 01:05:25.717][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-15 01:05:25.718][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-15 01:05:25.719][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2025-08-15 01:05:25.721][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2025-08-15 01:05:25.722][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2025-08-15 01:05:25.723][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-15 01:05:25.725][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-15 01:05:25.727][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-15 01:05:25.732][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2025-08-15 01:05:25.773][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-08-15 01:05:25.787][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2025-08-15 01:05:25.789][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-08-15 01:05:25.790][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-08-15 01:05:25.792][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-08-15 01:05:25.793][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-08-15 01:05:25.794][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-08-15 01:05:25.795][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-08-15 01:05:25.797][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2025-08-15 01:05:25.798][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-08-15 01:05:25.799][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-08-15 01:05:25.801][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2025-08-15 01:05:25.802][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-08-15 01:05:25.803][self$setPropertyValue] Setting property "parsing.expr" to "<NULL>".
biodb.DEBUG[2025-08-15 01:05:25.805][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-08-15 01:05:25.806][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-08-15 01:05:25.806][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-08-15 01:05:25.806][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-08-15 01:05:25.806][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2025-08-15 01:05:25.806][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2025-08-15 01:05:26.202][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-08-15 01:05:26.203][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-08-15 01:05:26.205][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-08-15 01:05:26.206][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-08-15 01:05:26.207][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-08-15 01:05:26.208][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-08-15 01:05:26.209][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-08-15 01:05:26.211][self$setPropertyValue] Setting property "urls" to "<NULL>".
biodb.DEBUG[2025-08-15 01:05:26.212][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-08-15 01:05:26.213][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-08-15 01:05:26.214][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-08-15 01:05:26.216][self$setPropertyValue] Setting property "xml.ns" to "<NULL>".
biodb.DEBUG[2025-08-15 01:05:26.217][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2025-08-15 01:05:26.219][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-08-15 01:05:26.220][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2025-08-15 01:05:26.221][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-08-15 01:05:26.223][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-08-15 01:05:26.224][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-08-15 01:05:26.225][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-08-15 01:05:26.226][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-08-15 01:05:26.227][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-08-15 01:05:26.229][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2025-08-15 01:05:26.230][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-08-15 01:05:26.231][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-08-15 01:05:26.232][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2025-08-15 01:05:26.234][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-08-15 01:05:26.235][self$setPropertyValue] Setting property "parsing.expr" to "<NULL>".
biodb.DEBUG[2025-08-15 01:05:26.236][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-08-15 01:05:26.237][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-08-15 01:05:26.237][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-08-15 01:05:26.237][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-08-15 01:05:26.237][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2025-08-15 01:05:26.237][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2025-08-15 01:05:26.239][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-08-15 01:05:26.240][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-08-15 01:05:26.241][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-08-15 01:05:26.242][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-08-15 01:05:26.243][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-08-15 01:05:26.244][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-08-15 01:05:26.246][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-08-15 01:05:26.247][self$setPropertyValue] Setting property "urls" to "<NULL>".
biodb.DEBUG[2025-08-15 01:05:26.248][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-08-15 01:05:26.249][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-08-15 01:05:26.250][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-08-15 01:05:26.251][self$setPropertyValue] Setting property "xml.ns" to "<NULL>".
biodb.DEBUG[2025-08-15 01:05:26.253][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2025-08-15 01:05:26.261][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-08-15 01:05:26.262][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2025-08-15 01:05:26.263][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-08-15 01:05:26.265][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-08-15 01:05:26.266][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-08-15 01:05:26.267][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-08-15 01:05:26.268][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-08-15 01:05:26.269][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-08-15 01:05:26.270][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2025-08-15 01:05:26.272][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-08-15 01:05:26.273][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2025-08-15 01:05:26.274][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2025-08-15 01:05:26.275][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-08-15 01:05:26.277][self$setPropertyValue] Setting property "parsing.expr" to "<NULL>".
biodb.DEBUG[2025-08-15 01:05:26.278][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-08-15 01:05:26.279][self$setPropertyValue] Setting property "searchable.fields" to "<NULL>".
biodb.DEBUG[2025-08-15 01:05:26.280][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-08-15 01:05:26.281][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-08-15 01:05:26.283][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-08-15 01:05:26.284][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-08-15 01:05:26.285][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-08-15 01:05:26.286][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-08-15 01:05:26.287][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-08-15 01:05:26.289][self$setPropertyValue] Setting property "urls" to "<NULL>".
biodb.DEBUG[2025-08-15 01:05:26.291][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-08-15 01:05:26.292][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-08-15 01:05:26.293][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-08-15 01:05:26.294][self$setPropertyValue] Setting property "xml.ns" to "<NULL>".
biodb.DEBUG[2025-08-15 01:05:26.295][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2025-08-15 01:05:26.297][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-08-15 01:05:26.299][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2025-08-15 01:05:26.300][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-08-15 01:05:26.301][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-08-15 01:05:26.302][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-08-15 01:05:26.304][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-08-15 01:05:26.305][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-08-15 01:05:26.306][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-08-15 01:05:26.307][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2025-08-15 01:05:26.309][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-08-15 01:05:26.310][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2025-08-15 01:05:26.311][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2025-08-15 01:05:26.312][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-08-15 01:05:26.314][self$setPropertyValue] Setting property "parsing.expr" to "<NULL>".
biodb.DEBUG[2025-08-15 01:05:26.315][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-08-15 01:05:26.316][self$setPropertyValue] Setting property "searchable.fields" to "<NULL>".
biodb.DEBUG[2025-08-15 01:05:26.317][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-08-15 01:05:26.319][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-08-15 01:05:26.320][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-08-15 01:05:26.321][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-08-15 01:05:26.322][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-08-15 01:05:26.323][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-08-15 01:05:26.324][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-08-15 01:05:26.326][self$setPropertyValue] Setting property "urls" to "<NULL>".
biodb.DEBUG[2025-08-15 01:05:26.327][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-08-15 01:05:26.328][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-08-15 01:05:26.329][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-08-15 01:05:26.330][self$setPropertyValue] Setting property "xml.ns" to "<NULL>".
biodb.DEBUG[2025-08-15 01:05:26.334][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-08-15 01:05:26.335][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2025-08-15 01:05:26.336][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-15 01:05:26.337][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-15 01:05:26.338][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-15 01:05:26.339][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-15 01:05:26.341][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-15 01:05:26.342][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-15 01:05:26.343][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-15 01:05:26.344][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-15 01:05:26.345][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-15 01:05:26.346][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-15 01:05:26.347][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-15 01:05:26.348][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-15 01:05:26.349][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-15 01:05:26.351][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-15 01:05:26.352][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-15 01:05:26.353][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-15 01:05:26.354][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-15 01:05:26.355][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-15 01:05:26.356][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-15 01:05:26.357][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-15 01:05:26.358][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-15 01:05:26.359][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-15 01:05:26.360][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-15 01:05:26.362][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-15 01:05:26.363][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-15 01:05:26.364][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-15 01:05:26.365][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-15 01:05:26.366][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-15 01:05:26.367][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-15 01:05:26.368][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-15 01:05:26.369][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-15 01:05:26.370][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-15 01:05:26.372][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-15 01:05:26.373][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-15 01:05:26.374][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-15 01:05:26.375][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-15 01:05:26.376][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-15 01:05:26.377][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-15 01:05:26.378][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-15 01:05:26.379][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-15 01:05:26.380][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-15 01:05:26.381][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-15 01:05:26.383][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-15 01:05:26.384][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-15 01:05:26.385][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-15 01:05:26.386][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-15 01:05:26.387][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-15 01:05:26.388][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-15 01:05:26.389][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-15 01:05:26.390][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-15 01:05:26.391][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-15 01:05:26.393][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-15 01:05:26.394][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-15 01:05:26.395][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-15 01:05:26.396][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-15 01:05:26.397][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-15 01:05:26.398][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-15 01:05:26.399][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-15 01:05:26.401][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-15 01:05:26.402][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-15 01:05:26.403][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-15 01:05:26.404][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-15 01:05:26.405][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-15 01:05:26.406][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-15 01:05:26.407][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-15 01:05:26.408][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-15 01:05:26.409][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-15 01:05:26.411][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-15 01:05:26.412][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-15 01:05:26.413][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-15 01:05:26.414][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-15 01:05:26.415][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-15 01:05:26.416][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-15 01:05:26.417][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-15 01:05:26.418][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-15 01:05:26.420][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-15 01:05:26.421][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-15 01:05:26.422][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-15 01:05:26.423][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-15 01:05:26.424][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-15 01:05:26.425][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-15 01:05:26.427][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2025-08-15 01:05:26.431][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2025-08-15 01:05:26.433][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2025-08-15 01:05:26.434][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2025-08-15 01:05:26.436][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2025-08-15 01:05:26.437][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2025-08-15 01:05:26.439][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2025-08-15 01:05:26.441][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2025-08-15 01:05:26.442][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2025-08-15 01:05:26.444][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2025-08-15 01:05:26.445][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2025-08-15 01:05:26.447][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2025-08-15 01:05:26.449][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2025-08-15 01:05:26.450][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2025-08-15 01:05:26.452][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2025-08-15 01:05:26.453][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2025-08-15 01:05:26.455][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2025-08-15 01:05:26.457][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2025-08-15 01:05:26.458][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2025-08-15 01:05:26.460][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2025-08-15 01:05:26.461][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2025-08-15 01:05:26.463][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2025-08-15 01:05:26.465][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2025-08-15 01:05:26.466][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2025-08-15 01:05:26.468][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2025-08-15 01:05:26.470][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2025-08-15 01:05:26.472][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2025-08-15 01:05:26.473][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2025-08-15 01:05:26.475][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2025-08-15 01:05:26.477][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2025-08-15 01:05:26.478][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2025-08-15 01:05:26.480][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2025-08-15 01:05:26.482][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2025-08-15 01:05:26.484][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2025-08-15 01:05:26.486][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2025-08-15 01:05:26.487][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2025-08-15 01:05:26.489][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2025-08-15 01:05:26.490][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2025-08-15 01:05:26.493][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2025-08-15 01:05:26.496][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2025-08-15 01:05:26.498][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2025-08-15 01:05:26.501][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2025-08-15 01:05:26.503][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2025-08-15 01:05:26.505][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2025-08-15 01:05:26.507][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2025-08-15 01:05:26.508][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2025-08-15 01:05:26.510][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2025-08-15 01:05:26.512][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2025-08-15 01:05:26.513][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2025-08-15 01:05:26.515][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2025-08-15 01:05:26.516][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2025-08-15 01:05:26.518][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2025-08-15 01:05:26.519][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2025-08-15 01:05:26.521][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2025-08-15 01:05:26.523][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2025-08-15 01:05:26.525][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2025-08-15 01:05:26.527][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2025-08-15 01:05:26.534][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2025-08-15 01:05:26.535][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2025-08-15 01:05:26.537][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2025-08-15 01:05:26.539][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2025-08-15 01:05:26.540][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2025-08-15 01:05:26.542][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2025-08-15 01:05:26.543][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2025-08-15 01:05:26.545][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2025-08-15 01:05:26.546][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2025-08-15 01:05:26.548][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2025-08-15 01:05:26.549][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2025-08-15 01:05:26.551][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2025-08-15 01:05:26.552][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2025-08-15 01:05:26.554][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2025-08-15 01:05:26.556][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2025-08-15 01:05:26.557][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2025-08-15 01:05:26.559][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2025-08-15 01:05:26.560][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2025-08-15 01:05:26.562][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2025-08-15 01:05:26.563][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2025-08-15 01:05:26.565][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2025-08-15 01:05:26.566][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2025-08-15 01:05:26.568][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2025-08-15 01:05:26.570][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2025-08-15 01:05:26.571][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2025-08-15 01:05:26.573][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2025-08-15 01:05:26.609][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2025-08-15 01:05:26.612][initialize] This is biodb version 1.17.1.
biodb.DEBUG[2025-08-15 01:05:26.615][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-08-15 01:05:26.616][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2025-08-15 01:05:26.617][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-15 01:05:26.619][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2025-08-15 01:05:26.620][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-15 01:05:26.624][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-15 01:05:26.625][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-15 01:05:26.627][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-15 01:05:26.628][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-15 01:05:26.629][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-15 01:05:26.630][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-15 01:05:26.631][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-15 01:05:26.632][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-15 01:05:26.633][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-15 01:05:26.634][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-15 01:05:26.635][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-15 01:05:26.636][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-15 01:05:26.637][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-15 01:05:26.639][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-15 01:05:26.640][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-15 01:05:26.641][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-15 01:05:26.642][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-15 01:05:26.643][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-15 01:05:26.644][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-15 01:05:26.645][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-15 01:05:26.646][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-15 01:05:26.647][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-15 01:05:26.649][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-15 01:05:26.650][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-15 01:05:26.651][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-15 01:05:26.652][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-15 01:05:26.653][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-15 01:05:26.654][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-15 01:05:26.655][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-15 01:05:26.656][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-15 01:05:26.657][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-15 01:05:26.658][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-15 01:05:26.659][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-15 01:05:26.660][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-15 01:05:26.662][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-15 01:05:26.663][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-15 01:05:26.664][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-15 01:05:26.665][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-15 01:05:26.666][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-15 01:05:26.667][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-15 01:05:26.668][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-15 01:05:26.669][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-15 01:05:26.670][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-15 01:05:26.671][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-15 01:05:26.672][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-15 01:05:26.673][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-15 01:05:26.675][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-15 01:05:26.676][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-15 01:05:26.677][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-15 01:05:26.678][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-15 01:05:26.679][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-15 01:05:26.680][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-15 01:05:26.681][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-15 01:05:26.682][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-15 01:05:26.683][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-15 01:05:26.685][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-15 01:05:26.686][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-15 01:05:26.687][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-15 01:05:26.688][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-15 01:05:26.689][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-15 01:05:26.690][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-15 01:05:26.691][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-15 01:05:26.692][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-15 01:05:26.693][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-15 01:05:26.694][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-15 01:05:26.696][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-15 01:05:26.697][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-15 01:05:26.699][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-15 01:05:26.700][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-15 01:05:26.702][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-15 01:05:26.704][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-15 01:05:26.706][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-15 01:05:26.707][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-15 01:05:26.709][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-15 01:05:26.711][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-15 01:05:26.712][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-15 01:05:26.714][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-15 01:05:26.716][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-15 01:05:26.718][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-15 01:05:26.719][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-15 01:05:26.721][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-15 01:05:26.723][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-15 01:05:26.725][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-15 01:05:26.726][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-15 01:05:26.728][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-15 01:05:26.730][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-15 01:05:26.732][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-15 01:05:26.733][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-15 01:05:26.735][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-15 01:05:26.737][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-15 01:05:26.739][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-15 01:05:26.741][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-15 01:05:26.743][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-15 01:05:26.744][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-15 01:05:26.745][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-15 01:05:26.746][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-15 01:05:26.747][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-15 01:05:26.748][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-15 01:05:26.750][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-15 01:05:26.751][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-15 01:05:26.752][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-15 01:05:26.753][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-15 01:05:26.754][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-15 01:05:26.755][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-15 01:05:26.756][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-15 01:05:26.757][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-15 01:05:26.758][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-15 01:05:26.759][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-15 01:05:26.761][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-15 01:05:26.762][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-15 01:05:26.763][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-15 01:05:26.764][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-15 01:05:26.767][biodb$loadDefinitions] Load definitions from file "F:/biocbuild/bbs-3.22-bioc/R/library/biodbChebi/definitions.yml".
biodb.DEBUG[2025-08-15 01:05:26.776][self$getDbsInfo()$define] Define connector chebi.
biodb.DEBUG[2025-08-15 01:05:26.778][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-08-15 01:05:26.780][self$setPropertyValue] Setting property "description" to "NA".
biodb.DEBUG[2025-08-15 01:05:26.781][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-08-15 01:05:26.782][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-08-15 01:05:26.784][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-08-15 01:05:26.785][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-08-15 01:05:26.786][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2025-08-15 01:05:26.787][self$setPropertyValue] Setting property "entry.content.encoding" to "UTF-8".
biodb.DEBUG[2025-08-15 01:05:26.788][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2025-08-15 01:05:26.790][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-08-15 01:05:26.791][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-08-15 01:05:26.792][self$setPropertyValue] Setting property "name" to "ChEBI".
biodb.DEBUG[2025-08-15 01:05:26.793][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-08-15 01:05:26.795][self$setPropertyValue] Setting property "parsing.expr" to "substring-after(//chebi:return/chebi:chebiId,'CHEBI:')".
biodb.DEBUG[2025-08-15 01:05:26.795][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:charge".
biodb.DEBUG[2025-08-15 01:05:26.795][self$setPropertyValue] Setting property "parsing.expr" to "c("//chebi:Formulae/chebi:source[text()='ChEBI']/../chebi:data", "(//chebi:Formulae/chebi:data)[1]")".
biodb.DEBUG[2025-08-15 01:05:26.795][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:inchi".
biodb.DEBUG[2025-08-15 01:05:26.795][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:inchiKey".
biodb.DEBUG[2025-08-15 01:05:26.795][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:DatabaseLinks/chebi:type[text()='KEGG COMPOUND accession']/../chebi:data".
biodb.DEBUG[2025-08-15 01:05:26.795][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:mass".
biodb.DEBUG[2025-08-15 01:05:26.795][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:monoisotopicMass".
biodb.DEBUG[2025-08-15 01:05:26.795][self$setPropertyValue] Setting property "parsing.expr" to "c("//chebi:chebiAsciiName", "//chebi:Synonyms/chebi:data")".
biodb.DEBUG[2025-08-15 01:05:26.795][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:entityStar".
biodb.DEBUG[2025-08-15 01:05:26.795][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:smiles".
biodb.DEBUG[2025-08-15 01:05:26.796][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2025-08-15 01:05:26.797][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-08-15 01:05:26.797][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-08-15 01:05:26.797][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-08-15 01:05:26.798][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2025-08-15 01:05:26.800][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-08-15 01:05:26.801][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-08-15 01:05:26.802][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-08-15 01:05:26.803][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-08-15 01:05:26.804][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-08-15 01:05:26.805][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-08-15 01:05:26.806][self$setPropertyValue] Setting property "urls" to "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-08-15 01:05:26.806][self$setPropertyValue] Setting property "urls" to "https://www.ebi.ac.uk/webservices/chebi/2.0/".
biodb.DEBUG[2025-08-15 01:05:26.808][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-08-15 01:05:26.809][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-08-15 01:05:26.810][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2025-08-15 01:05:26.811][self$setPropertyValue] Setting property "xml.ns" to "https://www.ebi.ac.uk/webservices/chebi".
biodb.DEBUG[2025-08-15 01:05:26.811][self$setPropertyValue] Setting property "xml.ns" to "http://www.w3.org/2001/XMLSchema".
biodb.DEBUG[2025-08-15 01:05:26.817][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2025-08-15 01:05:26.819][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2025-08-15 01:05:26.821][self$getEntryFields()$define] Define field n_stars.
biodb.DEBUG[2025-08-15 01:05:26.823][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2025-08-15 01:05:26.824][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2025-08-15 01:05:26.826][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2025-08-15 01:05:26.854][super$initialize] Initialize connector chebi.
biodb.DEBUG[2025-08-15 01:05:26.883][biodb$getFactory()$createConn] Creating new connector chebi for database class chebi .
biodb.INFO [2025-08-15 01:05:26.899][biodb::testThat]
biodb.INFO [2025-08-15 01:05:26.900][biodb::testThat] Running test function  test.entry.fields  (" Entry fields have a correct value ").
biodb.INFO [2025-08-15 01:05:26.901][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-08-15 01:05:26.902][biodb::testThat]
biodb.TRACE[2025-08-15 01:05:26.960][loadFileContents] Loaded 1 files from cache: [1]: "F:/biocbuild/bbs-3.22-bioc/R/library/biodbChebi/testref/entry-chebi-15440-content.xml".
biodb.DEBUG[2025-08-15 01:05:26.962][biodb$getFactory()$createEntryFromCo ...] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-15 01:05:26.966][biodb$getFactory()$createEntryFromCo ...] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-15 01:05:26.973][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-15 01:05:26.974][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-15 01:05:26.975][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-15 01:05:27.058][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-15 01:05:27.059][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-15 01:05:27.060][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-15 01:05:27.061][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-15 01:05:27.071][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-15 01:05:27.072][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-15 01:05:27.073][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:27.074][ef$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:27.077][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-15 01:05:27.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-15 01:05:27.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:27.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:27.092][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-15 01:05:27.094][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-15 01:05:27.095][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:27.096][ef$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:27.120][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-15 01:05:27.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-15 01:05:27.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:27.125][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:27.127][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-15 01:05:27.128][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-15 01:05:27.129][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:27.131][ef$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:27.132][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-15 01:05:27.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-15 01:05:27.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:27.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:27.137][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-15 01:05:27.139][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-15 01:05:27.140][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:27.141][ef$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:27.143][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-15 01:05:27.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-15 01:05:27.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:27.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:27.148][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-15 01:05:27.149][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-15 01:05:27.150][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:27.151][ef$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:27.153][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-15 01:05:27.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-15 01:05:27.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:27.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:27.158][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-15 01:05:27.159][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-15 01:05:27.161][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:27.162][ef$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:27.164][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-15 01:05:27.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-15 01:05:27.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:27.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:27.169][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-15 01:05:27.170][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:27.171][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:27.173][ef$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:27.174][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-15 01:05:27.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:27.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:27.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:27.179][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:27.181][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:27.182][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:27.183][ef$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:27.185][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:27.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:27.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:27.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:27.190][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-15 01:05:27.191][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-15 01:05:27.192][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:27.194][ef$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:27.195][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-15 01:05:27.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-15 01:05:27.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:27.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:27.203][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-15 01:05:27.205][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-15 01:05:27.207][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:27.209][ef$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:27.212][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-15 01:05:27.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-15 01:05:27.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:27.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:27.218][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-15 01:05:27.219][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-15 01:05:27.221][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:27.222][ef$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:27.223][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-15 01:05:27.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-15 01:05:27.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:27.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:27.229][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-15 01:05:27.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-15 01:05:27.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:27.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:27.234][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-15 01:05:27.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-15 01:05:27.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:27.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:27.241][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-15 01:05:27.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-15 01:05:27.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:27.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:27.259][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-15 01:05:27.260][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-15 01:05:27.261][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:27.262][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:27.264][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-15 01:05:27.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-15 01:05:27.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:27.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:27.269][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-15 01:05:27.270][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-15 01:05:27.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:27.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:27.274][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-15 01:05:27.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-15 01:05:27.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:27.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:27.310][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-15 01:05:27.312][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-15 01:05:27.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:27.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:27.316][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-15 01:05:27.317][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-15 01:05:27.318][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:27.319][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:27.321][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-15 01:05:27.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-15 01:05:27.324][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:27.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-15 01:05:27.328][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 15440.
biodb.TRACE[2025-08-15 01:05:27.336][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-15 01:05:27.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-15 01:05:27.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:27.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:27.344][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-15 01:05:27.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-15 01:05:27.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:27.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:27.387][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-15 01:05:27.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-15 01:05:27.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:27.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:27.396][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-15 01:05:27.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-15 01:05:27.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:27.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:27.404][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:27.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:27.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:27.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:27.412][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:27.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:27.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:27.417][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:27.419][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-08-15 01:05:27.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-08-15 01:05:27.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:27.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:27.427][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-08-15 01:05:27.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-08-15 01:05:27.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:27.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:27.434][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2025-08-15 01:05:27.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-08-15 01:05:27.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:27.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:27.442][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-08-15 01:05:27.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-08-15 01:05:27.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:27.448][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:27.461][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-15 01:05:27.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-15 01:05:27.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:27.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:27.483][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-15 01:05:27.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-15 01:05:27.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:27.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:27.495][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-15 01:05:27.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-15 01:05:27.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:27.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:27.500][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-15 01:05:27.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-15 01:05:27.503][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:27.504][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:27.505][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-15 01:05:27.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-15 01:05:27.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:27.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:27.517][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-15 01:05:27.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-15 01:05:27.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:27.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:27.522][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-15 01:05:27.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-15 01:05:27.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:27.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:27.527][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-15 01:05:27.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-15 01:05:27.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:27.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:27.533][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-15 01:05:27.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-15 01:05:27.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:27.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:27.538][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-15 01:05:27.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-15 01:05:27.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:27.541][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:27.543][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-15 01:05:27.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-15 01:05:27.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:27.546][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:27.561][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-15 01:05:27.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-15 01:05:27.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:27.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:27.566][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-15 01:05:27.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-15 01:05:27.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:27.569][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:27.571][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-15 01:05:27.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-15 01:05:27.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:27.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:27.576][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-15 01:05:27.577][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-15 01:05:27.578][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:27.579][ef$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:27.580][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-15 01:05:27.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-15 01:05:27.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:27.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:27.607][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-15 01:05:27.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-15 01:05:27.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:27.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:27.616][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-15 01:05:27.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-15 01:05:27.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:27.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:27.624][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-15 01:05:27.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-15 01:05:27.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:27.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:27.632][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-15 01:05:27.634][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-15 01:05:27.636][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:27.637][ef$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:27.639][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-15 01:05:27.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-15 01:05:27.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:27.645][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:27.664][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-15 01:05:27.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-15 01:05:27.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:27.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:27.670][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-15 01:05:27.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-15 01:05:27.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:27.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:27.675][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-15 01:05:27.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-15 01:05:27.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:27.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:27.680][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-15 01:05:27.681][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-15 01:05:27.682][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:27.683][ef$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:27.685][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-15 01:05:27.686][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-15 01:05:27.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:27.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:27.701][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-15 01:05:27.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-15 01:05:27.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:27.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:27.706][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-15 01:05:27.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-15 01:05:27.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:27.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:27.711][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-15 01:05:27.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-15 01:05:27.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:27.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:27.716][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-15 01:05:27.717][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-15 01:05:27.719][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:27.720][ef$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:27.721][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-15 01:05:27.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-15 01:05:27.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:27.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:27.741][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:27.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:27.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:27.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:27.749][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:27.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:27.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:27.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:27.758][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:27.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:27.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:27.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:27.764][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:27.765][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:27.766][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:27.767][ef$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:27.769][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:27.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:27.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:27.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:27.793][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:27.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:27.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:27.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:27.801][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:27.803][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:27.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:27.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:27.808][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:27.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:27.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:27.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:27.825][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:27.827][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:27.829][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:27.830][ef$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:27.832][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:27.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:27.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:27.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:27.867][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-15 01:05:27.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-15 01:05:27.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:27.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:27.874][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-15 01:05:27.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-15 01:05:27.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:27.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:27.883][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-15 01:05:27.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-15 01:05:27.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:27.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:27.888][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-15 01:05:27.889][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-15 01:05:27.891][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:27.892][ef$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:27.893][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-15 01:05:27.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-15 01:05:27.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:27.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:27.917][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-15 01:05:27.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-15 01:05:27.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:27.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:27.923][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-15 01:05:27.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-15 01:05:27.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:27.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:27.927][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-15 01:05:27.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-15 01:05:27.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:27.931][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:27.933][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-15 01:05:27.935][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-15 01:05:27.936][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:27.938][ef$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:27.940][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-15 01:05:27.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-15 01:05:27.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:27.945][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:27.965][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-15 01:05:27.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-15 01:05:27.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:27.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:27.971][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-15 01:05:27.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-15 01:05:27.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:27.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:27.976][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-15 01:05:27.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-15 01:05:27.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:27.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:27.981][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-15 01:05:27.982][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-15 01:05:27.983][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:27.984][ef$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:27.985][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-15 01:05:27.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-15 01:05:27.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:27.990][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:28.012][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-15 01:05:28.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-15 01:05:28.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:28.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:28.021][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-15 01:05:28.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-15 01:05:28.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:28.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:28.029][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-15 01:05:28.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-15 01:05:28.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:28.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:28.038][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-15 01:05:28.040][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-15 01:05:28.042][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:28.044][ef$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:28.046][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-15 01:05:28.048][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-15 01:05:28.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:28.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:28.069][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-15 01:05:28.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-15 01:05:28.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:28.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:28.075][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-15 01:05:28.077][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-15 01:05:28.079][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:28.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:28.083][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-15 01:05:28.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-15 01:05:28.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:28.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:28.091][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-15 01:05:28.093][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-15 01:05:28.095][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:28.097][ef$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:28.099][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-15 01:05:28.101][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-15 01:05:28.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:28.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:28.156][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-15 01:05:28.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-15 01:05:28.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:28.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:28.162][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-15 01:05:28.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-15 01:05:28.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:28.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:28.168][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-15 01:05:28.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-15 01:05:28.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:28.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:28.173][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-15 01:05:28.174][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-15 01:05:28.175][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:28.176][ef$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:28.177][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-15 01:05:28.179][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-15 01:05:28.180][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:28.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:28.230][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-15 01:05:28.232][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-15 01:05:28.233][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:28.235][ef$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:28.255][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-15 01:05:28.257][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-15 01:05:28.258][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:28.260][ef$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:28.270][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-15 01:05:28.271][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-15 01:05:28.272][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:28.273][ef$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:28.290][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-15 01:05:28.291][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-15 01:05:28.292][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:28.294][ef$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:28.305][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-15 01:05:28.307][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-15 01:05:28.308][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:28.310][ef$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:28.320][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-15 01:05:28.322][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-15 01:05:28.323][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:28.324][ef$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:28.340][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:28.342][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:28.343][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:28.344][ef$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:28.353][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:28.354][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:28.355][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:28.357][ef$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:28.364][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-08-15 01:05:28.365][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-15 01:05:28.367][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:28.368][ef$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:28.382][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-15 01:05:28.383][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-15 01:05:28.385][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:28.386][ef$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:28.401][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-15 01:05:28.403][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-15 01:05:28.404][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:28.405][ef$get] fields variable is a list.
biodb.INFO [2025-08-15 01:05:28.419][biodb::testThat]
biodb.INFO [2025-08-15 01:05:28.421][biodb::testThat] Running test function  test.rt.unit  (" RT unit is defined when there is an RT value. ").
biodb.INFO [2025-08-15 01:05:28.422][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-08-15 01:05:28.424][biodb::testThat]
biodb.DEBUG[2025-08-15 01:05:28.437][private$loadEntries] Creating entries from ids [1]: "15440".
biodb.DEBUG[2025-08-15 01:05:28.460][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-08-15 01:05:28.464][cch$loadContents] Load 1 contents, from C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-08-15 01:05:28.470][FUN] Found encoding ISO-8859-1 for file C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/15440.xml.
biodb.DEBUG[2025-08-15 01:05:28.472][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-15 01:05:28.493][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-15 01:05:28.495][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-15 01:05:28.497][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-15 01:05:28.498][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-15 01:05:28.499][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-15 01:05:28.513][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-15 01:05:28.514][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-15 01:05:28.515][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-15 01:05:28.516][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-15 01:05:28.519][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-15 01:05:28.520][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-15 01:05:28.522][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:28.523][ef$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:28.524][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-15 01:05:28.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-15 01:05:28.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:28.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:28.565][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-15 01:05:28.567][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-15 01:05:28.569][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:28.571][ef$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:28.573][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-15 01:05:28.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-15 01:05:28.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:28.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:28.582][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-15 01:05:28.584][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-15 01:05:28.585][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:28.587][ef$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:28.590][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-15 01:05:28.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-15 01:05:28.594][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:28.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:28.598][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-15 01:05:28.600][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-15 01:05:28.602][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:28.604][ef$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:28.606][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-15 01:05:28.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-15 01:05:28.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:28.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:28.615][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-15 01:05:28.617][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-15 01:05:28.619][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:28.621][ef$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:28.623][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-15 01:05:28.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-15 01:05:28.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:28.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:28.631][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-15 01:05:28.632][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-15 01:05:28.634][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:28.636][ef$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:28.638][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-15 01:05:28.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-15 01:05:28.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:28.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:28.646][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-15 01:05:28.649][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:28.650][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:28.652][ef$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:28.654][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-15 01:05:28.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:28.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:28.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:28.659][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:28.660][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:28.661][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:28.662][ef$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:28.664][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:28.665][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:28.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:28.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:28.669][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-15 01:05:28.670][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-15 01:05:28.671][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:28.672][ef$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:28.674][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-15 01:05:28.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-15 01:05:28.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:28.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:28.679][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-15 01:05:28.680][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-15 01:05:28.682][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:28.683][ef$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:28.684][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-15 01:05:28.686][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-15 01:05:28.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:28.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:28.689][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-15 01:05:28.690][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-15 01:05:28.692][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:28.693][ef$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:28.694][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-15 01:05:28.696][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-15 01:05:28.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:28.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:28.699][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-15 01:05:28.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-15 01:05:28.702][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:28.703][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:28.704][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-15 01:05:28.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-15 01:05:28.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:28.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:28.709][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-15 01:05:28.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-15 01:05:28.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:28.713][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:28.714][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-15 01:05:28.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-15 01:05:28.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:28.718][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:28.719][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-15 01:05:28.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-15 01:05:28.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:28.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:28.724][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-15 01:05:28.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-15 01:05:28.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:28.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:28.729][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-15 01:05:28.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-15 01:05:28.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:28.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:28.734][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-15 01:05:28.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-15 01:05:28.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:28.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:28.741][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-15 01:05:28.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-15 01:05:28.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:28.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:28.749][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-15 01:05:28.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-15 01:05:28.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:28.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-15 01:05:28.757][self$createEntryFromContent] Accession numbers: 15440.
biodb.TRACE[2025-08-15 01:05:28.759][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2025-08-15 01:05:28.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2025-08-15 01:05:28.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:28.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:28.767][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2025-08-15 01:05:28.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2025-08-15 01:05:28.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:28.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:28.775][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2025-08-15 01:05:28.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2025-08-15 01:05:28.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:28.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2025-08-15 01:05:28.810][biodb::testThat]
biodb.INFO [2025-08-15 01:05:28.812][biodb::testThat] Running test function  test.searchForEntries  (" We can search for an entry by searchable field ").
biodb.INFO [2025-08-15 01:05:28.814][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-08-15 01:05:28.816][biodb::testThat]
biodb.TRACE[2025-08-15 01:05:28.822][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-15 01:05:28.824][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-15 01:05:28.826][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:28.828][ef$get] fields variable is a list.
biodb.DEBUG[2025-08-15 01:05:28.831][function(conn, opt)] Testing searchForEntries() with entry "15440" and field "name".
biodb.TRACE[2025-08-15 01:05:28.890][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-15 01:05:28.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-15 01:05:28.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:28.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:28.896][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-15 01:05:28.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-15 01:05:28.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:28.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:28.901][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-15 01:05:28.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-15 01:05:28.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:28.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-15 01:05:28.909][function(conn, opt)] With value "squalene".
sched.DEBUG[2025-08-15 01:05:28.915][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/webservice?wsdl".
fscache.INFO [2025-08-15 01:05:28.933][private$cache$loadContents] Load 1 contents, from C:\Users\biocbuild\AppData\Local/R/cache/R/sched.
fscache.DEBUG[2025-08-15 01:05:28.938][FUN] Found encoding ISO-8859-1 for file C:\Users\biocbuild\AppData\Local/R/cache/R/sched/a2ed8f44d213d85be0d7e9a0448c78ad.content.
sched.DEBUG[2025-08-15 01:05:28.940][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
sched.DEBUG[2025-08-15 01:05:28.963][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-08-15 01:05:29.011][private$cache$loadContents] Load 1 contents, from C:\Users\biocbuild\AppData\Local/R/cache/R/sched.
fscache.DEBUG[2025-08-15 01:05:29.033][FUN] Found encoding ISO-8859-1 for file C:\Users\biocbuild\AppData\Local/R/cache/R/sched/80cdc67a2a6332dd4ceb98b7656194b9.content.
sched.DEBUG[2025-08-15 01:05:29.035][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-08-15 01:05:29.037][function(conn, opt)] With found IDs [1]: "15440".
biodb.TRACE[2025-08-15 01:05:29.071][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:29.073][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:29.074][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:29.075][ef$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:29.076][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:29.078][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:29.079][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:29.080][ef$get] fields variable is a list.
biodb.INFO [2025-08-15 01:05:29.092][biodb::testThat]
biodb.INFO [2025-08-15 01:05:29.093][biodb::testThat] Running test function  test.searchByName  (" We can search for an entry by name. ").
biodb.INFO [2025-08-15 01:05:29.095][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-08-15 01:05:29.096][biodb::testThat]
biodb.TRACE[2025-08-15 01:05:29.129][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-15 01:05:29.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-15 01:05:29.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:29.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:29.135][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-15 01:05:29.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-15 01:05:29.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:29.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:29.140][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-15 01:05:29.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-15 01:05:29.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:29.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
sched.DEBUG[2025-08-15 01:05:29.248][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-08-15 01:05:29.253][private$cache$loadContents] Load 1 contents, from C:\Users\biocbuild\AppData\Local/R/cache/R/sched.
fscache.DEBUG[2025-08-15 01:05:29.258][FUN] Found encoding ISO-8859-1 for file C:\Users\biocbuild\AppData\Local/R/cache/R/sched/80cdc67a2a6332dd4ceb98b7656194b9.content.
sched.DEBUG[2025-08-15 01:05:29.260][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.INFO [2025-08-15 01:05:29.314][biodb::testThat]
biodb.INFO [2025-08-15 01:05:29.315][biodb::testThat] Running test function  testEntryLoading  (" We can load an entry from the database. ").
biodb.INFO [2025-08-15 01:05:29.317][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-08-15 01:05:29.318][biodb::testThat]
biodb.TRACE[2025-08-15 01:05:29.344][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-15 01:05:29.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-15 01:05:29.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:29.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:29.351][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-15 01:05:29.352][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-15 01:05:29.353][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:29.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:29.356][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-15 01:05:29.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-15 01:05:29.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:29.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:29.361][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-15 01:05:29.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-15 01:05:29.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:29.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:29.366][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:29.367][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:29.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:29.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:29.371][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:29.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:29.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:29.374][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:29.376][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-08-15 01:05:29.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-08-15 01:05:29.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:29.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:29.380][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-08-15 01:05:29.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-08-15 01:05:29.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:29.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:29.385][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2025-08-15 01:05:29.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-08-15 01:05:29.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:29.389][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:29.390][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-08-15 01:05:29.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-08-15 01:05:29.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:29.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:29.411][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-15 01:05:29.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-15 01:05:29.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:29.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:29.416][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-15 01:05:29.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-15 01:05:29.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:29.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:29.428][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-15 01:05:29.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-15 01:05:29.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:29.431][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:29.433][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-15 01:05:29.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-15 01:05:29.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:29.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:29.438][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:29.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:29.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:29.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:29.443][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:29.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:29.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:29.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:29.448][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-08-15 01:05:29.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-08-15 01:05:29.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:29.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:29.453][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-08-15 01:05:29.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-08-15 01:05:29.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:29.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:29.458][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2025-08-15 01:05:29.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-08-15 01:05:29.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:29.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:29.463][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-08-15 01:05:29.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-08-15 01:05:29.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:29.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2025-08-15 01:05:29.492][biodb::testThat]
biodb.INFO [2025-08-15 01:05:29.494][biodb::testThat] Running test function  test.entry.page.url  (" We can get a URL pointing to the entry page. ").
biodb.INFO [2025-08-15 01:05:29.495][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-08-15 01:05:29.496][biodb::testThat]
biodb.INFO [2025-08-15 01:05:29.508][biodb::testThat]
biodb.INFO [2025-08-15 01:05:29.509][biodb::testThat] Running test function  test.entry.image.url  (" We can get a URL pointing to the entry image. ").
biodb.INFO [2025-08-15 01:05:29.511][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-08-15 01:05:29.512][biodb::testThat]
biodb.INFO [2025-08-15 01:05:29.535][biodb::testThat]
biodb.INFO [2025-08-15 01:05:29.538][biodb::testThat] Running test function  test.entry.page.url.download  (" The entry page URL can be downloaded. ").
biodb.INFO [2025-08-15 01:05:29.540][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-08-15 01:05:29.542][biodb::testThat]
biodb.DEBUG[2025-08-15 01:05:29.548][function(conn, opt)] Trying to download "https://www.ebi.ac.uk/chebi/searchId.do?chebiId=15440".
sched.TRACE[2025-08-15 01:05:30.587][try_get_rcurl_content] Using RCurl package for sending request (https://www.ebi.ac.uk/chebi/searchId.do?chebiId=15440).
biodb.INFO [2025-08-15 01:05:31.294][biodb::testThat]
biodb.INFO [2025-08-15 01:05:31.295][biodb::testThat] Running test function  test.entry.image.url.download  (" The entry image URL can be downloaded. ").
biodb.INFO [2025-08-15 01:05:31.296][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-08-15 01:05:31.298][biodb::testThat]
biodb.TRACE[2025-08-15 01:05:31.307][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-15 01:05:31.308][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-15 01:05:31.309][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:31.311][ef$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:31.312][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:31.313][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:31.314][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:31.316][ef$get] fields variable is a list.
biodb.INFO [2025-08-15 01:05:31.318][biodb::testThat]
biodb.INFO [2025-08-15 01:05:31.319][biodb::testThat] Running test function  test.searchCompound  (" We can search for a compound ").
biodb.INFO [2025-08-15 01:05:31.320][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-08-15 01:05:31.321][biodb::testThat]
biodb.TRACE[2025-08-15 01:05:31.344][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-15 01:05:31.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-15 01:05:31.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:31.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:31.350][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-15 01:05:31.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-15 01:05:31.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:31.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:31.354][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-15 01:05:31.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-15 01:05:31.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:31.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
sched.DEBUG[2025-08-15 01:05:31.498][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-08-15 01:05:31.502][private$cache$loadContents] Load 1 contents, from C:\Users\biocbuild\AppData\Local/R/cache/R/sched.
fscache.DEBUG[2025-08-15 01:05:31.505][FUN] Found encoding ISO-8859-1 for file C:\Users\biocbuild\AppData\Local/R/cache/R/sched/80cdc67a2a6332dd4ceb98b7656194b9.content.
sched.DEBUG[2025-08-15 01:05:31.506][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
sched.DEBUG[2025-08-15 01:05:31.594][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-08-15 01:05:31.598][private$cache$loadContents] Load 1 contents, from C:\Users\biocbuild\AppData\Local/R/cache/R/sched.
fscache.DEBUG[2025-08-15 01:05:31.601][FUN] Found encoding ISO-8859-1 for file C:\Users\biocbuild\AppData\Local/R/cache/R/sched/80cdc67a2a6332dd4ceb98b7656194b9.content.
sched.DEBUG[2025-08-15 01:05:31.603][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.TRACE[2025-08-15 01:05:31.653][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-08-15 01:05:31.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-08-15 01:05:31.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:31.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:31.670][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:31.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:31.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:31.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:31.676][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:31.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:31.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:31.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:31.681][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:31.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:31.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:31.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:31.687][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:31.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:31.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:31.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:31.692][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:31.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:31.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:31.696][self$getBiodb()$getEntryFields()$get] fields variable is a list.
sched.DEBUG[2025-08-15 01:05:31.704][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.72*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-08-15 01:05:31.707][private$cache$loadContents] Load 1 contents, from C:\Users\biocbuild\AppData\Local/R/cache/R/sched.
fscache.DEBUG[2025-08-15 01:05:31.726][FUN] Found encoding ISO-8859-1 for file C:\Users\biocbuild\AppData\Local/R/cache/R/sched/8fc54eee7e982ce554bee8000d8203f7.content.
sched.DEBUG[2025-08-15 01:05:31.727][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-08-15 01:05:31.730][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-15 01:05:31.732][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-15 01:05:31.733][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-15 01:05:31.762][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-15 01:05:31.764][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-15 01:05:31.765][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-15 01:05:31.766][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-15 01:05:31.768][private$loadEntries] Creating entries from ids [1]: "192288".
biodb.DEBUG[2025-08-15 01:05:31.808][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-08-15 01:05:31.810][cch$loadContents] Load 1 contents, from C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-08-15 01:05:31.829][FUN] Found encoding ISO-8859-1 for file C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/192288.xml.
biodb.DEBUG[2025-08-15 01:05:31.831][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-15 01:05:31.833][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-15 01:05:31.836][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-15 01:05:31.839][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-15 01:05:31.841][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-15 01:05:31.843][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-15 01:05:31.855][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-15 01:05:31.857][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-15 01:05:31.858][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-15 01:05:31.859][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-15 01:05:31.862][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-15 01:05:31.863][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-15 01:05:31.865][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:31.866][ef$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:31.867][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-15 01:05:31.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-15 01:05:31.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:31.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:31.873][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-15 01:05:31.875][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-15 01:05:31.876][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:31.877][ef$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:31.879][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-15 01:05:31.881][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-15 01:05:31.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:31.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:31.887][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-15 01:05:31.889][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-15 01:05:31.891][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:31.892][ef$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:31.894][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-15 01:05:31.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-15 01:05:31.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:31.899][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:31.900][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-15 01:05:31.902][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-15 01:05:31.903][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:31.904][ef$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:31.906][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-15 01:05:31.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-15 01:05:31.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:31.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:31.918][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-15 01:05:31.919][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-15 01:05:31.920][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:31.921][ef$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:31.923][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-15 01:05:31.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-15 01:05:31.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:31.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:31.928][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-15 01:05:31.929][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-15 01:05:31.931][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:31.932][ef$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:31.933][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-15 01:05:31.935][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:31.936][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:31.937][ef$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:31.939][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-15 01:05:31.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:31.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:31.943][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:31.945][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:31.946][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:31.947][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:31.948][ef$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:31.950][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:31.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:31.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:31.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:31.955][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-15 01:05:31.956][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-15 01:05:31.958][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:31.959][ef$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:31.961][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-15 01:05:31.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-15 01:05:31.963][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:31.964][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:31.966][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-15 01:05:31.967][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-15 01:05:31.968][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:31.969][ef$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:31.971][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-15 01:05:31.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-15 01:05:31.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:31.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:31.976][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-15 01:05:31.977][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-15 01:05:31.978][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:31.980][ef$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:31.981][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-15 01:05:31.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-15 01:05:31.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:31.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:31.986][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-15 01:05:31.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-15 01:05:31.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:31.990][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:31.991][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-15 01:05:31.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-15 01:05:31.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:31.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:31.996][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-15 01:05:31.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-15 01:05:31.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:32.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:32.001][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-15 01:05:32.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-15 01:05:32.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:32.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:32.006][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-15 01:05:32.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-15 01:05:32.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:32.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:32.011][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-15 01:05:32.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-15 01:05:32.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:32.015][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:32.016][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-15 01:05:32.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-15 01:05:32.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:32.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:32.022][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-15 01:05:32.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-15 01:05:32.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:32.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:32.030][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-15 01:05:32.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-15 01:05:32.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:32.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:32.038][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-15 01:05:32.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-15 01:05:32.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:32.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-15 01:05:32.045][self$createEntryFromContent] Accession numbers: 192288.
biodb.TRACE[2025-08-15 01:05:32.057][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:32.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:32.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:32.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:32.062][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:32.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:32.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:32.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:32.067][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:32.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:32.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:32.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
sched.DEBUG[2025-08-15 01:05:32.073][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.73*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-08-15 01:05:32.076][private$cache$loadContents] Load 1 contents, from C:\Users\biocbuild\AppData\Local/R/cache/R/sched.
fscache.DEBUG[2025-08-15 01:05:32.098][FUN] Found encoding ISO-8859-1 for file C:\Users\biocbuild\AppData\Local/R/cache/R/sched/6def615835d7c1dfccd5a5f135bd2f9d.content.
sched.DEBUG[2025-08-15 01:05:32.100][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-08-15 01:05:32.120][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-15 01:05:32.121][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-15 01:05:32.123][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-15 01:05:32.139][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-15 01:05:32.140][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-15 01:05:32.141][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-15 01:05:32.143][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-15 01:05:32.144][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:32.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:32.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:32.150][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:32.162][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:32.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:32.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:32.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:32.172][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:32.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:32.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:32.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-15 01:05:32.181][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-15 01:05:32.183][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-15 01:05:32.185][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-15 01:05:32.233][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-15 01:05:32.235][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-15 01:05:32.236][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-15 01:05:32.237][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-15 01:05:32.239][private$loadEntries] Creating entries from ids [1]: "209892".
biodb.DEBUG[2025-08-15 01:05:32.240][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-08-15 01:05:32.242][cch$loadContents] Load 1 contents, from C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-08-15 01:05:32.261][FUN] Found encoding ISO-8859-1 for file C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/209892.xml.
biodb.DEBUG[2025-08-15 01:05:32.262][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-15 01:05:32.264][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-15 01:05:32.266][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-15 01:05:32.268][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-15 01:05:32.269][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-15 01:05:32.270][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-15 01:05:32.290][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-15 01:05:32.292][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-15 01:05:32.293][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-15 01:05:32.294][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-15 01:05:32.297][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-15 01:05:32.298][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-15 01:05:32.299][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:32.300][ef$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:32.302][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-15 01:05:32.303][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-15 01:05:32.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:32.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:32.307][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-15 01:05:32.308][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-15 01:05:32.309][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:32.311][ef$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:32.312][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-15 01:05:32.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-15 01:05:32.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:32.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:32.317][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-15 01:05:32.318][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-15 01:05:32.319][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:32.321][ef$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:32.322][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-15 01:05:32.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-15 01:05:32.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:32.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:32.327][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-15 01:05:32.329][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-15 01:05:32.330][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:32.331][ef$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:32.332][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-15 01:05:32.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-15 01:05:32.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:32.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:32.337][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-15 01:05:32.339][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-15 01:05:32.340][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:32.341][ef$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:32.343][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-15 01:05:32.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-15 01:05:32.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:32.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:32.351][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-15 01:05:32.353][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-15 01:05:32.355][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:32.357][ef$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:32.360][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-15 01:05:32.362][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:32.363][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:32.364][ef$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:32.366][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-15 01:05:32.367][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:32.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:32.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:32.371][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:32.372][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:32.373][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:32.374][ef$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:32.376][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:32.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:32.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:32.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:32.381][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-15 01:05:32.382][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-15 01:05:32.383][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:32.384][ef$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:32.386][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-15 01:05:32.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-15 01:05:32.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:32.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:32.391][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-15 01:05:32.392][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-15 01:05:32.393][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:32.395][ef$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:32.396][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-15 01:05:32.397][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-15 01:05:32.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:32.400][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:32.401][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-15 01:05:32.402][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-15 01:05:32.404][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:32.405][ef$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:32.406][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-15 01:05:32.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-15 01:05:32.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:32.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:32.412][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-15 01:05:32.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-15 01:05:32.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:32.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:32.417][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-15 01:05:32.418][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-15 01:05:32.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:32.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:32.422][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-15 01:05:32.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-15 01:05:32.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:32.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:32.426][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-15 01:05:32.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-15 01:05:32.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:32.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:32.432][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-15 01:05:32.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-15 01:05:32.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:32.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:32.436][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-15 01:05:32.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-15 01:05:32.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:32.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:32.441][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-15 01:05:32.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-15 01:05:32.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:32.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:32.447][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-15 01:05:32.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-15 01:05:32.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:32.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:32.452][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-15 01:05:32.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-15 01:05:32.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:32.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:32.462][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-15 01:05:32.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-15 01:05:32.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:32.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-15 01:05:32.467][self$createEntryFromContent] Accession numbers: 209892.
biodb.TRACE[2025-08-15 01:05:32.468][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:32.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:32.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:32.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:32.473][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:32.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:32.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:32.477][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:32.478][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:32.480][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:32.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:32.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
sched.DEBUG[2025-08-15 01:05:32.530][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-08-15 01:05:32.534][private$cache$loadContents] Load 1 contents, from C:\Users\biocbuild\AppData\Local/R/cache/R/sched.
fscache.DEBUG[2025-08-15 01:05:32.537][FUN] Found encoding ISO-8859-1 for file C:\Users\biocbuild\AppData\Local/R/cache/R/sched/80cdc67a2a6332dd4ceb98b7656194b9.content.
sched.DEBUG[2025-08-15 01:05:32.539][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-08-15 01:05:32.542][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-15 01:05:32.544][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-15 01:05:32.545][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-15 01:05:32.551][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-15 01:05:32.553][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-15 01:05:32.555][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-15 01:05:32.556][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-15 01:05:32.559][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:32.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:32.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:32.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:32.566][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:32.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:32.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:32.572][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:32.574][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:32.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:32.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:32.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-15 01:05:32.582][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-15 01:05:32.584][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-15 01:05:32.585][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-15 01:05:32.599][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-15 01:05:32.600][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-15 01:05:32.601][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-15 01:05:32.603][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-15 01:05:32.604][private$loadEntries] Creating entries from ids [1]: "26747".
biodb.DEBUG[2025-08-15 01:05:32.605][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-08-15 01:05:32.607][cch$loadContents] Load 1 contents, from C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-08-15 01:05:32.627][FUN] Found encoding ISO-8859-1 for file C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/26747.xml.
biodb.DEBUG[2025-08-15 01:05:32.629][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-15 01:05:32.630][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-15 01:05:32.632][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-15 01:05:32.635][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-15 01:05:32.637][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-15 01:05:32.639][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-15 01:05:32.650][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-15 01:05:32.652][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-15 01:05:32.653][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-15 01:05:32.655][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-15 01:05:32.660][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-15 01:05:32.662][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-15 01:05:32.664][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:32.665][ef$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:32.668][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-15 01:05:32.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-15 01:05:32.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:32.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:32.676][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-15 01:05:32.678][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-15 01:05:32.680][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:32.681][ef$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:32.684][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-15 01:05:32.686][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-15 01:05:32.688][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:32.690][ef$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:32.692][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-15 01:05:32.694][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-15 01:05:32.696][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:32.697][ef$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:32.698][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-15 01:05:32.700][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-15 01:05:32.701][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:32.702][ef$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:32.703][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-15 01:05:32.705][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-15 01:05:32.706][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:32.707][ef$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:32.709][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-15 01:05:32.710][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:32.711][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:32.713][ef$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:32.714][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:32.715][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:32.716][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:32.718][ef$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:32.719][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-15 01:05:32.720][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-15 01:05:32.722][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:32.723][ef$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:32.724][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-15 01:05:32.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-15 01:05:32.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:32.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:32.730][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-15 01:05:32.732][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-15 01:05:32.733][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:32.734][ef$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:32.736][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-15 01:05:32.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-15 01:05:32.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:32.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:32.741][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-15 01:05:32.742][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-15 01:05:32.743][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:32.744][ef$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:32.746][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-15 01:05:32.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-15 01:05:32.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:32.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:32.751][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-15 01:05:32.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-15 01:05:32.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:32.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:32.761][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-15 01:05:32.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-15 01:05:32.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:32.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:32.766][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-15 01:05:32.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-15 01:05:32.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:32.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:32.771][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-15 01:05:32.773][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-15 01:05:32.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:32.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:32.776][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-15 01:05:32.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-15 01:05:32.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:32.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:32.781][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-15 01:05:32.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-15 01:05:32.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:32.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:32.786][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-15 01:05:32.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-15 01:05:32.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:32.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:32.791][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-15 01:05:32.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-15 01:05:32.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:32.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:32.796][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-15 01:05:32.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-15 01:05:32.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:32.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-15 01:05:32.801][self$createEntryFromContent] Accession numbers: 26747.
biodb.TRACE[2025-08-15 01:05:32.802][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:32.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:32.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:32.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:32.807][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:32.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:32.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:32.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:32.812][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:32.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:32.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:32.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:32.817][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:32.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:32.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:32.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:32.822][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:32.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:32.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:32.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-15 01:05:32.827][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-15 01:05:32.828][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-15 01:05:32.829][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-15 01:05:32.845][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-15 01:05:32.846][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-15 01:05:32.847][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-15 01:05:32.849][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-15 01:05:32.850][private$loadEntries] Creating entries from ids [1]: "59285".
biodb.DEBUG[2025-08-15 01:05:32.851][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-08-15 01:05:32.853][cch$loadContents] Load 1 contents, from C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-08-15 01:05:32.875][FUN] Found encoding ISO-8859-1 for file C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/59285.xml.
biodb.DEBUG[2025-08-15 01:05:32.877][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-15 01:05:32.879][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-15 01:05:32.880][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-15 01:05:32.882][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-15 01:05:32.883][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-15 01:05:32.885][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-15 01:05:32.899][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-15 01:05:32.901][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-15 01:05:32.902][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-15 01:05:32.904][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-15 01:05:32.906][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-15 01:05:32.909][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-15 01:05:32.911][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:32.913][ef$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:32.914][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-15 01:05:32.916][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-15 01:05:32.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:32.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:32.919][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-15 01:05:32.921][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-15 01:05:32.922][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:32.923][ef$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:32.924][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-15 01:05:32.926][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-15 01:05:32.927][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:32.928][ef$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:32.930][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-15 01:05:32.931][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-15 01:05:32.933][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:32.934][ef$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:32.936][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-15 01:05:32.937][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-15 01:05:32.938][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:32.940][ef$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:32.942][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-15 01:05:32.944][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-15 01:05:32.946][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:32.948][ef$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:32.950][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-15 01:05:32.952][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:32.954][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:32.956][ef$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:32.958][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:32.961][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:32.962][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:32.964][ef$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:32.967][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-15 01:05:32.969][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-15 01:05:32.971][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:32.972][ef$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:32.975][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-15 01:05:32.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-15 01:05:32.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:32.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:32.981][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-15 01:05:32.982][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-15 01:05:32.983][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:32.984][ef$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:32.986][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-15 01:05:32.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-15 01:05:32.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:32.990][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:32.991][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-15 01:05:32.992][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-15 01:05:32.993][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:32.995][ef$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:32.996][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-15 01:05:32.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-15 01:05:32.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:33.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:33.001][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-15 01:05:33.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-15 01:05:33.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:33.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:33.006][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-15 01:05:33.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-15 01:05:33.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:33.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:33.011][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-15 01:05:33.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-15 01:05:33.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:33.015][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:33.023][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-15 01:05:33.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-15 01:05:33.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:33.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:33.028][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-15 01:05:33.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-15 01:05:33.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:33.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:33.033][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-15 01:05:33.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-15 01:05:33.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:33.037][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:33.039][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-15 01:05:33.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-15 01:05:33.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:33.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:33.044][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-15 01:05:33.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-15 01:05:33.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:33.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:33.049][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-15 01:05:33.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-15 01:05:33.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:33.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-15 01:05:33.054][self$createEntryFromContent] Accession numbers: 59285.
biodb.TRACE[2025-08-15 01:05:33.055][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:33.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:33.058][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:33.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:33.060][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:33.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:33.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:33.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:33.066][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:33.067][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:33.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:33.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:33.071][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:33.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:33.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:33.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:33.076][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:33.077][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:33.079][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:33.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-15 01:05:33.081][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-15 01:05:33.082][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-15 01:05:33.083][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-15 01:05:33.096][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-15 01:05:33.097][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-15 01:05:33.098][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-15 01:05:33.099][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-15 01:05:33.101][private$loadEntries] Creating entries from ids [1]: "75174".
biodb.DEBUG[2025-08-15 01:05:33.102][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-08-15 01:05:33.104][cch$loadContents] Load 1 contents, from C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-08-15 01:05:33.128][FUN] Found encoding ISO-8859-1 for file C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/75174.xml.
biodb.DEBUG[2025-08-15 01:05:33.130][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-15 01:05:33.131][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-15 01:05:33.133][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-15 01:05:33.135][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-15 01:05:33.136][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-15 01:05:33.138][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-15 01:05:33.145][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-15 01:05:33.146][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-15 01:05:33.147][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-15 01:05:33.148][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-15 01:05:33.151][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-15 01:05:33.152][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-15 01:05:33.153][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:33.155][ef$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:33.156][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-15 01:05:33.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-15 01:05:33.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:33.160][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:33.161][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-15 01:05:33.163][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-15 01:05:33.164][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:33.165][ef$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:33.166][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-15 01:05:33.168][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-15 01:05:33.169][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:33.170][ef$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:33.172][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-15 01:05:33.173][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-15 01:05:33.174][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:33.176][ef$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:33.177][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-15 01:05:33.178][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-15 01:05:33.180][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:33.181][ef$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:33.182][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-15 01:05:33.184][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-15 01:05:33.185][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:33.186][ef$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:33.187][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-15 01:05:33.189][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:33.190][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:33.191][ef$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:33.193][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:33.194][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:33.195][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:33.197][ef$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:33.198][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-15 01:05:33.200][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-15 01:05:33.201][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:33.203][ef$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:33.206][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-15 01:05:33.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-15 01:05:33.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:33.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:33.214][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-15 01:05:33.216][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-15 01:05:33.218][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:33.219][ef$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:33.222][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-15 01:05:33.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-15 01:05:33.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:33.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:33.230][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-15 01:05:33.232][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-15 01:05:33.234][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:33.236][ef$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:33.238][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-15 01:05:33.241][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-15 01:05:33.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:33.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:33.246][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-15 01:05:33.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-15 01:05:33.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:33.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:33.254][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-15 01:05:33.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-15 01:05:33.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:33.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:33.262][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-15 01:05:33.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-15 01:05:33.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:33.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:33.270][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-15 01:05:33.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-15 01:05:33.274][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:33.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:33.278][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-15 01:05:33.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-15 01:05:33.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:33.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:33.294][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-15 01:05:33.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-15 01:05:33.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:33.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:33.303][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-15 01:05:33.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-15 01:05:33.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:33.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:33.311][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-15 01:05:33.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-15 01:05:33.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:33.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:33.319][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-15 01:05:33.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-15 01:05:33.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:33.325][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-15 01:05:33.327][self$createEntryFromContent] Accession numbers: 75174.
biodb.TRACE[2025-08-15 01:05:33.329][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:33.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:33.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:33.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:33.337][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:33.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:33.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:33.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:33.345][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:33.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:33.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:33.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:33.353][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:33.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:33.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:33.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:33.361][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:33.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:33.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:33.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-15 01:05:33.369][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-15 01:05:33.371][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-15 01:05:33.373][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-15 01:05:33.407][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-15 01:05:33.409][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-15 01:05:33.411][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-15 01:05:33.412][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-15 01:05:33.413][private$loadEntries] Creating entries from ids [1]: "15441".
biodb.DEBUG[2025-08-15 01:05:33.414][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-08-15 01:05:33.416][cch$loadContents] Load 1 contents, from C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-08-15 01:05:33.439][FUN] Found encoding ISO-8859-1 for file C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/15441.xml.
biodb.DEBUG[2025-08-15 01:05:33.441][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-15 01:05:33.444][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-15 01:05:33.447][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-15 01:05:33.450][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-15 01:05:33.451][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-15 01:05:33.453][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-15 01:05:33.460][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-15 01:05:33.461][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-15 01:05:33.462][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-15 01:05:33.464][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-15 01:05:33.466][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-15 01:05:33.468][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-15 01:05:33.469][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:33.470][ef$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:33.472][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-15 01:05:33.473][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-15 01:05:33.474][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:33.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:33.478][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-15 01:05:33.479][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-15 01:05:33.481][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:33.482][ef$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:33.483][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-15 01:05:33.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-15 01:05:33.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:33.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:33.488][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-15 01:05:33.490][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-15 01:05:33.491][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:33.492][ef$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:33.494][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-15 01:05:33.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-15 01:05:33.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:33.497][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:33.499][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-15 01:05:33.500][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-15 01:05:33.501][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:33.502][ef$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:33.504][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-15 01:05:33.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-15 01:05:33.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:33.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:33.509][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-15 01:05:33.510][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-15 01:05:33.512][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:33.513][ef$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:33.514][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-15 01:05:33.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-15 01:05:33.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:33.518][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:33.519][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-15 01:05:33.521][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-15 01:05:33.522][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:33.523][ef$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:33.525][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-15 01:05:33.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-15 01:05:33.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:33.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:33.531][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-15 01:05:33.532][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:33.534][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:33.535][ef$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:33.536][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-15 01:05:33.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:33.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:33.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:33.541][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:33.543][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:33.544][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:33.545][ef$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:33.547][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:33.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:33.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:33.551][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:33.552][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-15 01:05:33.553][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-15 01:05:33.554][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:33.556][ef$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:33.558][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-15 01:05:33.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-15 01:05:33.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:33.561][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:33.563][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-15 01:05:33.564][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-15 01:05:33.565][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:33.567][ef$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:33.568][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-15 01:05:33.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-15 01:05:33.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:33.572][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:33.573][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-15 01:05:33.575][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-15 01:05:33.576][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:33.577][ef$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:33.579][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-15 01:05:33.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-15 01:05:33.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:33.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:33.589][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-15 01:05:33.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-15 01:05:33.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:33.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:33.594][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-15 01:05:33.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-15 01:05:33.597][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:33.598][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:33.599][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-15 01:05:33.601][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-15 01:05:33.602][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:33.603][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:33.604][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-15 01:05:33.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-15 01:05:33.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:33.608][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:33.609][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-15 01:05:33.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-15 01:05:33.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:33.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:33.614][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-15 01:05:33.616][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-15 01:05:33.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:33.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:33.619][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-15 01:05:33.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-15 01:05:33.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:33.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:33.625][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-15 01:05:33.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-15 01:05:33.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:33.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:33.630][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-15 01:05:33.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-15 01:05:33.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:33.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:33.636][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-15 01:05:33.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-15 01:05:33.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:33.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-15 01:05:33.643][self$createEntryFromContent] Accession numbers: 15441.
biodb.TRACE[2025-08-15 01:05:33.645][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:33.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:33.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:33.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:33.653][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:33.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:33.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:33.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:33.660][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:33.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:33.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:33.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-15 01:05:33.668][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-15 01:05:33.670][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-15 01:05:33.672][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-15 01:05:33.694][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-15 01:05:33.696][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-15 01:05:33.697][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-15 01:05:33.698][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-15 01:05:33.699][private$loadEntries] Creating entries from ids [1]: "15442".
biodb.DEBUG[2025-08-15 01:05:33.701][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-08-15 01:05:33.703][cch$loadContents] Load 1 contents, from C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-08-15 01:05:33.722][FUN] Found encoding ISO-8859-1 for file C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/15442.xml.
biodb.DEBUG[2025-08-15 01:05:33.724][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-15 01:05:33.725][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-15 01:05:33.727][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-15 01:05:33.729][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-15 01:05:33.730][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-15 01:05:33.731][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-15 01:05:33.741][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-15 01:05:33.743][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-15 01:05:33.744][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-15 01:05:33.745][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-15 01:05:33.748][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-15 01:05:33.749][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-15 01:05:33.750][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:33.752][ef$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:33.753][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-15 01:05:33.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-15 01:05:33.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:33.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:33.758][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-15 01:05:33.759][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-15 01:05:33.761][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:33.762][ef$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:33.763][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-15 01:05:33.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-15 01:05:33.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:33.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:33.768][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-15 01:05:33.770][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-15 01:05:33.771][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:33.772][ef$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:33.774][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-15 01:05:33.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-15 01:05:33.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:33.778][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:33.779][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-15 01:05:33.780][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-15 01:05:33.781][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:33.783][ef$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:33.784][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-15 01:05:33.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-15 01:05:33.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:33.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:33.789][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-15 01:05:33.791][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-15 01:05:33.792][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:33.793][ef$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:33.795][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-15 01:05:33.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-15 01:05:33.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:33.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:33.801][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-15 01:05:33.802][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-15 01:05:33.803][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:33.804][ef$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:33.806][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-15 01:05:33.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-15 01:05:33.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:33.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:33.811][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-15 01:05:33.813][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:33.814][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:33.815][ef$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:33.817][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-15 01:05:33.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:33.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:33.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:33.822][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:33.824][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:33.825][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:33.826][ef$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:33.828][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:33.829][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:33.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:33.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:33.833][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-15 01:05:33.834][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-15 01:05:33.835][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:33.836][ef$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:33.838][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-15 01:05:33.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-15 01:05:33.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:33.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:33.849][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-15 01:05:33.850][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-15 01:05:33.852][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:33.853][ef$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:33.854][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-15 01:05:33.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-15 01:05:33.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:33.858][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:33.860][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-15 01:05:33.861][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-15 01:05:33.862][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:33.863][ef$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:33.865][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-15 01:05:33.867][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-15 01:05:33.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:33.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:33.872][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-15 01:05:33.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-15 01:05:33.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:33.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:33.879][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-15 01:05:33.881][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-15 01:05:33.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:33.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:33.886][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-15 01:05:33.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-15 01:05:33.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:33.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:33.894][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-15 01:05:33.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-15 01:05:33.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:33.899][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:33.901][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-15 01:05:33.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-15 01:05:33.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:33.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:33.908][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-15 01:05:33.910][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-15 01:05:33.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:33.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:33.915][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-15 01:05:33.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-15 01:05:33.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:33.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:33.923][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-15 01:05:33.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-15 01:05:33.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:33.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:33.930][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-15 01:05:33.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-15 01:05:33.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:33.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:33.937][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-15 01:05:33.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-15 01:05:33.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:33.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-15 01:05:33.944][self$createEntryFromContent] Accession numbers: 15442.
biodb.TRACE[2025-08-15 01:05:33.946][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:33.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:33.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:33.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:33.953][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:33.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:33.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:33.959][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:33.961][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:33.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:33.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:33.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-15 01:05:33.968][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-15 01:05:33.970][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-15 01:05:33.971][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-15 01:05:33.986][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-15 01:05:33.987][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-15 01:05:33.989][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-15 01:05:33.990][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-15 01:05:33.991][private$loadEntries] Creating entries from ids [1]: "57310".
biodb.DEBUG[2025-08-15 01:05:33.992][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-08-15 01:05:33.994][cch$loadContents] Load 1 contents, from C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-08-15 01:05:34.015][FUN] Found encoding ISO-8859-1 for file C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/57310.xml.
biodb.DEBUG[2025-08-15 01:05:34.017][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-15 01:05:34.019][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-15 01:05:34.020][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-15 01:05:34.023][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-15 01:05:34.024][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-15 01:05:34.026][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-15 01:05:34.044][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-15 01:05:34.046][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-15 01:05:34.048][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-15 01:05:34.050][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-15 01:05:34.054][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-15 01:05:34.055][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-15 01:05:34.057][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:34.058][ef$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:34.059][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-15 01:05:34.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-15 01:05:34.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:34.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:34.064][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-15 01:05:34.066][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-15 01:05:34.067][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:34.068][ef$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:34.069][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-15 01:05:34.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-15 01:05:34.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:34.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:34.074][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-15 01:05:34.076][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-15 01:05:34.077][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:34.078][ef$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:34.080][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-15 01:05:34.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-15 01:05:34.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:34.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:34.086][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-15 01:05:34.087][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-15 01:05:34.088][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:34.089][ef$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:34.091][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-15 01:05:34.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-15 01:05:34.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:34.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:34.096][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-15 01:05:34.097][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-15 01:05:34.098][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:34.099][ef$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:34.101][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-15 01:05:34.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-15 01:05:34.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:34.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:34.106][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-15 01:05:34.108][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-15 01:05:34.109][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:34.110][ef$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:34.111][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-15 01:05:34.113][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:34.114][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:34.115][ef$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:34.117][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-15 01:05:34.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:34.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:34.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:34.122][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:34.123][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:34.124][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:34.125][ef$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:34.127][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:34.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:34.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:34.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:34.138][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-15 01:05:34.139][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-15 01:05:34.140][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:34.141][ef$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:34.143][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-15 01:05:34.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-15 01:05:34.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:34.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:34.148][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-15 01:05:34.149][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-15 01:05:34.150][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:34.152][ef$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:34.153][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-15 01:05:34.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-15 01:05:34.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:34.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:34.158][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-15 01:05:34.159][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-15 01:05:34.161][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:34.162][ef$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:34.163][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-15 01:05:34.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-15 01:05:34.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:34.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:34.169][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-15 01:05:34.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-15 01:05:34.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:34.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:34.173][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-15 01:05:34.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-15 01:05:34.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:34.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:34.178][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-15 01:05:34.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-15 01:05:34.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:34.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:34.183][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-15 01:05:34.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-15 01:05:34.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:34.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:34.188][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-15 01:05:34.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-15 01:05:34.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:34.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:34.193][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-15 01:05:34.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-15 01:05:34.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:34.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:34.198][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-15 01:05:34.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-15 01:05:34.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:34.202][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:34.204][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-15 01:05:34.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-15 01:05:34.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:34.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:34.209][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-15 01:05:34.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-15 01:05:34.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:34.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:34.214][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-15 01:05:34.215][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-15 01:05:34.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:34.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-15 01:05:34.219][self$createEntryFromContent] Accession numbers: 57310.
biodb.TRACE[2025-08-15 01:05:34.221][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:34.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:34.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:34.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:34.226][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:34.227][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:34.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:34.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:34.231][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:34.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:34.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:34.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-15 01:05:34.236][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-15 01:05:34.237][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-15 01:05:34.238][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-15 01:05:34.252][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-15 01:05:34.253][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-15 01:05:34.255][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-15 01:05:34.256][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-15 01:05:34.258][private$loadEntries] Creating entries from ids [1]: "66216".
biodb.DEBUG[2025-08-15 01:05:34.259][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-08-15 01:05:34.261][cch$loadContents] Load 1 contents, from C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-08-15 01:05:34.282][FUN] Found encoding ISO-8859-1 for file C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/66216.xml.
biodb.DEBUG[2025-08-15 01:05:34.284][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-15 01:05:34.285][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-15 01:05:34.287][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-15 01:05:34.289][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-15 01:05:34.290][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-15 01:05:34.292][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-15 01:05:34.302][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-15 01:05:34.304][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-15 01:05:34.305][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-15 01:05:34.306][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-15 01:05:34.309][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-15 01:05:34.311][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-15 01:05:34.312][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:34.313][ef$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:34.315][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-15 01:05:34.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-15 01:05:34.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:34.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:34.320][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-15 01:05:34.321][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-15 01:05:34.322][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:34.323][ef$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:34.325][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-15 01:05:34.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-15 01:05:34.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:34.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:34.330][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-15 01:05:34.331][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-15 01:05:34.333][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:34.334][ef$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:34.335][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-15 01:05:34.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-15 01:05:34.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:34.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:34.341][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-15 01:05:34.342][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-15 01:05:34.343][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:34.344][ef$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:34.346][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-15 01:05:34.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-15 01:05:34.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:34.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:34.351][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-15 01:05:34.353][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-15 01:05:34.354][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:34.355][ef$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:34.357][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-15 01:05:34.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-15 01:05:34.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:34.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:34.362][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-15 01:05:34.363][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-15 01:05:34.364][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:34.366][ef$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:34.367][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-15 01:05:34.375][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:34.376][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:34.377][ef$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:34.379][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-15 01:05:34.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:34.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:34.383][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:34.385][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:34.387][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:34.388][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:34.389][ef$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:34.391][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:34.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:34.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:34.395][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:34.396][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-15 01:05:34.398][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-15 01:05:34.399][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:34.400][ef$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:34.402][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-15 01:05:34.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-15 01:05:34.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:34.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:34.407][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-15 01:05:34.408][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-15 01:05:34.410][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:34.411][ef$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:34.412][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-15 01:05:34.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-15 01:05:34.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:34.416][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:34.417][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-15 01:05:34.419][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-15 01:05:34.420][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:34.421][ef$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:34.423][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-15 01:05:34.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-15 01:05:34.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:34.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:34.428][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-15 01:05:34.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-15 01:05:34.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:34.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:34.433][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-15 01:05:34.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-15 01:05:34.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:34.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:34.438][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-15 01:05:34.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-15 01:05:34.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:34.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:34.443][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-15 01:05:34.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-15 01:05:34.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:34.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:34.448][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-15 01:05:34.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-15 01:05:34.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:34.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:34.453][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-15 01:05:34.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-15 01:05:34.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:34.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:34.458][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-15 01:05:34.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-15 01:05:34.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:34.462][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:34.464][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-15 01:05:34.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-15 01:05:34.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:34.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:34.468][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-15 01:05:34.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-15 01:05:34.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:34.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:34.473][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-15 01:05:34.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-15 01:05:34.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:34.477][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-15 01:05:34.478][self$createEntryFromContent] Accession numbers: 66216.
biodb.TRACE[2025-08-15 01:05:34.480][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:34.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:34.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:34.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:34.485][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:34.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:34.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:34.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:34.490][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:34.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:34.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:34.494][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-15 01:05:34.496][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-15 01:05:34.497][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-15 01:05:34.499][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-15 01:05:34.512][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-15 01:05:34.513][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-15 01:05:34.514][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-15 01:05:34.515][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-15 01:05:34.517][private$loadEntries] Creating entries from ids [1]: "70860".
biodb.DEBUG[2025-08-15 01:05:34.518][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-08-15 01:05:34.520][cch$loadContents] Load 1 contents, from C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-08-15 01:05:34.543][FUN] Found encoding ISO-8859-1 for file C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/70860.xml.
biodb.DEBUG[2025-08-15 01:05:34.545][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-15 01:05:34.546][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-15 01:05:34.548][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-15 01:05:34.550][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-15 01:05:34.551][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-15 01:05:34.552][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-15 01:05:34.580][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-15 01:05:34.581][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-15 01:05:34.582][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-15 01:05:34.584][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-15 01:05:34.586][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-15 01:05:34.588][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-15 01:05:34.590][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:34.591][ef$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:34.593][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-15 01:05:34.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-15 01:05:34.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:34.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:34.598][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-15 01:05:34.599][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-15 01:05:34.600][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:34.602][ef$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:34.604][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-15 01:05:34.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-15 01:05:34.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:34.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:34.611][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-15 01:05:34.614][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-15 01:05:34.616][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:34.618][ef$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:34.620][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-15 01:05:34.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-15 01:05:34.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:34.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:34.628][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-15 01:05:34.630][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-15 01:05:34.632][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:34.634][ef$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:34.636][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-15 01:05:34.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-15 01:05:34.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:34.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:34.644][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-15 01:05:34.654][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-15 01:05:34.656][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:34.658][ef$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:34.660][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-15 01:05:34.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-15 01:05:34.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:34.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:34.668][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-15 01:05:34.670][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-15 01:05:34.672][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:34.674][ef$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:34.676][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-15 01:05:34.678][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:34.680][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:34.682][ef$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:34.684][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-15 01:05:34.686][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:34.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:34.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:34.692][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:34.694][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:34.696][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:34.698][ef$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:34.700][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:34.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:34.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:34.706][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:34.709][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-15 01:05:34.710][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-15 01:05:34.711][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:34.713][ef$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:34.715][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-15 01:05:34.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-15 01:05:34.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:34.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:34.720][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-15 01:05:34.722][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-15 01:05:34.723][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:34.724][ef$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:34.726][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-15 01:05:34.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-15 01:05:34.728][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:34.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:34.731][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-15 01:05:34.732][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-15 01:05:34.733][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:34.735][ef$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:34.737][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-15 01:05:34.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-15 01:05:34.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:34.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:34.743][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-15 01:05:34.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-15 01:05:34.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:34.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:34.748][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-15 01:05:34.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-15 01:05:34.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:34.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:34.753][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-15 01:05:34.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-15 01:05:34.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:34.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:34.759][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-15 01:05:34.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-15 01:05:34.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:34.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:34.764][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-15 01:05:34.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-15 01:05:34.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:34.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:34.769][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-15 01:05:34.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-15 01:05:34.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:34.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:34.774][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-15 01:05:34.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-15 01:05:34.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:34.778][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:34.779][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-15 01:05:34.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-15 01:05:34.782][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:34.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:34.784][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-15 01:05:34.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-15 01:05:34.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:34.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:34.789][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-15 01:05:34.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-15 01:05:34.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:34.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-15 01:05:34.794][self$createEntryFromContent] Accession numbers: 70860.
biodb.TRACE[2025-08-15 01:05:34.795][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:34.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:34.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:34.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:34.800][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:34.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:34.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:34.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:34.805][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:34.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:34.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:34.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-15 01:05:34.810][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-15 01:05:34.811][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-15 01:05:34.812][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-15 01:05:34.824][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-15 01:05:34.825][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-15 01:05:34.827][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-15 01:05:34.828][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-15 01:05:34.829][private$loadEntries] Creating entries from ids [1]: "70861".
biodb.DEBUG[2025-08-15 01:05:34.830][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-08-15 01:05:34.832][cch$loadContents] Load 1 contents, from C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-08-15 01:05:34.851][FUN] Found encoding ISO-8859-1 for file C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/70861.xml.
biodb.DEBUG[2025-08-15 01:05:34.853][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-15 01:05:34.854][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-15 01:05:34.856][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-15 01:05:34.858][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-15 01:05:34.859][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-15 01:05:34.860][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-15 01:05:34.870][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-15 01:05:34.871][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-15 01:05:34.872][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-15 01:05:34.873][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-15 01:05:34.876][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-15 01:05:34.878][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-15 01:05:34.879][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:34.880][ef$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:34.881][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-15 01:05:34.883][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-15 01:05:34.884][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:34.885][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:34.887][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-15 01:05:34.888][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-15 01:05:34.889][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:34.890][ef$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:34.892][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-15 01:05:34.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-15 01:05:34.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:34.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:34.897][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-15 01:05:34.898][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-15 01:05:34.899][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:34.901][ef$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:34.908][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-15 01:05:34.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-15 01:05:34.911][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:34.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:34.913][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-15 01:05:34.914][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-15 01:05:34.916][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:34.917][ef$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:34.919][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-15 01:05:34.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-15 01:05:34.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:34.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:34.924][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-15 01:05:34.925][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-15 01:05:34.926][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:34.927][ef$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:34.929][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-15 01:05:34.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-15 01:05:34.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:34.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:34.935][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-15 01:05:34.937][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-15 01:05:34.939][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:34.941][ef$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:34.943][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-15 01:05:34.945][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:34.947][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:34.949][ef$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:34.951][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-15 01:05:34.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:34.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:34.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:34.959][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:34.961][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:34.963][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:34.965][ef$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:34.968][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:34.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:34.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:34.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:34.976][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-15 01:05:34.978][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-15 01:05:34.980][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:34.982][ef$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:34.984][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-15 01:05:34.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-15 01:05:34.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:34.990][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:34.992][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-15 01:05:34.994][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-15 01:05:34.996][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:34.997][ef$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:34.998][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-15 01:05:35.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-15 01:05:35.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:35.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:35.003][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-15 01:05:35.005][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-15 01:05:35.006][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:35.007][ef$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:35.009][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-15 01:05:35.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-15 01:05:35.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:35.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:35.014][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-15 01:05:35.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-15 01:05:35.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:35.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:35.019][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-15 01:05:35.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-15 01:05:35.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:35.022][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:35.024][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-15 01:05:35.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-15 01:05:35.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:35.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:35.028][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-15 01:05:35.030][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-15 01:05:35.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:35.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:35.033][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-15 01:05:35.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-15 01:05:35.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:35.037][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:35.038][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-15 01:05:35.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-15 01:05:35.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:35.042][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:35.043][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-15 01:05:35.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-15 01:05:35.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:35.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:35.048][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-15 01:05:35.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-15 01:05:35.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:35.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:35.053][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-15 01:05:35.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-15 01:05:35.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:35.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:35.058][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-15 01:05:35.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-15 01:05:35.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:35.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-15 01:05:35.063][self$createEntryFromContent] Accession numbers: 70861.
biodb.TRACE[2025-08-15 01:05:35.064][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:35.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:35.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:35.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:35.069][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:35.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:35.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:35.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:35.074][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:35.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:35.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:35.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-15 01:05:35.079][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-15 01:05:35.080][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-15 01:05:35.081][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-15 01:05:35.090][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-15 01:05:35.091][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-15 01:05:35.092][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-15 01:05:35.093][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-15 01:05:35.095][private$loadEntries] Creating entries from ids [1]: "78662".
biodb.DEBUG[2025-08-15 01:05:35.096][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-08-15 01:05:35.098][cch$loadContents] Load 1 contents, from C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-08-15 01:05:35.122][FUN] Found encoding ISO-8859-1 for file C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/78662.xml.
biodb.DEBUG[2025-08-15 01:05:35.124][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-15 01:05:35.125][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-15 01:05:35.127][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-15 01:05:35.129][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-15 01:05:35.130][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-15 01:05:35.131][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-15 01:05:35.138][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-15 01:05:35.139][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-15 01:05:35.140][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-15 01:05:35.142][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-15 01:05:35.146][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-15 01:05:35.149][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-15 01:05:35.151][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:35.153][ef$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:35.155][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-15 01:05:35.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-15 01:05:35.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:35.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:35.173][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-15 01:05:35.176][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-15 01:05:35.178][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:35.180][ef$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:35.183][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-15 01:05:35.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-15 01:05:35.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:35.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:35.190][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-15 01:05:35.192][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-15 01:05:35.193][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:35.194][ef$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:35.196][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-15 01:05:35.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-15 01:05:35.198][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:35.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:35.201][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-15 01:05:35.202][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-15 01:05:35.203][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:35.204][ef$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:35.206][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-15 01:05:35.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-15 01:05:35.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:35.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:35.215][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-15 01:05:35.217][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-15 01:05:35.219][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:35.221][ef$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:35.223][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-15 01:05:35.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-15 01:05:35.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:35.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:35.232][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-15 01:05:35.234][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-15 01:05:35.236][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:35.238][ef$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:35.239][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-15 01:05:35.241][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:35.242][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:35.243][ef$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:35.245][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-15 01:05:35.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:35.247][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:35.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:35.250][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:35.251][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:35.252][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:35.253][ef$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:35.255][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:35.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:35.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:35.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:35.261][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-15 01:05:35.264][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-15 01:05:35.266][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:35.268][ef$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:35.270][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-15 01:05:35.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-15 01:05:35.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:35.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:35.279][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-15 01:05:35.281][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-15 01:05:35.283][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:35.285][ef$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:35.288][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-15 01:05:35.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-15 01:05:35.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:35.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:35.296][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-15 01:05:35.298][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-15 01:05:35.300][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:35.301][ef$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:35.303][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-15 01:05:35.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-15 01:05:35.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:35.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:35.311][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-15 01:05:35.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-15 01:05:35.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:35.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:35.317][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-15 01:05:35.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-15 01:05:35.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:35.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:35.322][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-15 01:05:35.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-15 01:05:35.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:35.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:35.327][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-15 01:05:35.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-15 01:05:35.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:35.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:35.332][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-15 01:05:35.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-15 01:05:35.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:35.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:35.337][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-15 01:05:35.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-15 01:05:35.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:35.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:35.342][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-15 01:05:35.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-15 01:05:35.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:35.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:35.347][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-15 01:05:35.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-15 01:05:35.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:35.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:35.352][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-15 01:05:35.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-15 01:05:35.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:35.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:35.358][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-15 01:05:35.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-15 01:05:35.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:35.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-15 01:05:35.366][self$createEntryFromContent] Accession numbers: 78662.
biodb.TRACE[2025-08-15 01:05:35.369][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:35.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:35.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:35.374][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:35.375][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:35.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:35.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:35.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:35.380][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:35.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:35.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:35.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-15 01:05:35.385][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-15 01:05:35.386][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-15 01:05:35.388][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-15 01:05:35.406][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-15 01:05:35.408][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-15 01:05:35.409][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-15 01:05:35.410][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-15 01:05:35.411][private$loadEntries] Creating entries from ids [1]: "85084".
biodb.DEBUG[2025-08-15 01:05:35.412][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-08-15 01:05:35.414][cch$loadContents] Load 1 contents, from C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-08-15 01:05:35.433][FUN] Found encoding ISO-8859-1 for file C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/85084.xml.
biodb.DEBUG[2025-08-15 01:05:35.434][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-15 01:05:35.436][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-15 01:05:35.437][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-15 01:05:35.439][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-15 01:05:35.440][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-15 01:05:35.442][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-15 01:05:35.461][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-15 01:05:35.462][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-15 01:05:35.463][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-15 01:05:35.465][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-15 01:05:35.469][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-15 01:05:35.472][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-15 01:05:35.474][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:35.475][ef$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:35.478][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-15 01:05:35.480][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-15 01:05:35.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:35.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:35.484][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-15 01:05:35.485][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-15 01:05:35.486][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:35.487][ef$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:35.489][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-15 01:05:35.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-15 01:05:35.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:35.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:35.494][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-15 01:05:35.495][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-15 01:05:35.497][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:35.498][ef$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:35.499][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-15 01:05:35.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-15 01:05:35.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:35.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:35.505][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-15 01:05:35.506][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-15 01:05:35.507][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:35.508][ef$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:35.510][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-15 01:05:35.511][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-15 01:05:35.512][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:35.513][ef$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:35.515][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-15 01:05:35.516][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-15 01:05:35.518][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:35.519][ef$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:35.521][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-15 01:05:35.523][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:35.524][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:35.525][ef$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:35.527][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-15 01:05:35.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:35.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:35.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:35.533][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:35.534][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:35.535][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:35.537][ef$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:35.538][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:35.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:35.541][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:35.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:35.543][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-15 01:05:35.545][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-15 01:05:35.546][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:35.547][ef$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:35.549][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-15 01:05:35.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-15 01:05:35.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:35.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:35.554][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-15 01:05:35.555][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-15 01:05:35.557][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:35.558][ef$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:35.559][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-15 01:05:35.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-15 01:05:35.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:35.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:35.564][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-15 01:05:35.566][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-15 01:05:35.567][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:35.569][ef$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:35.570][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-15 01:05:35.571][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-15 01:05:35.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:35.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:35.575][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-15 01:05:35.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-15 01:05:35.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:35.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:35.580][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-15 01:05:35.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-15 01:05:35.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:35.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:35.585][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-15 01:05:35.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-15 01:05:35.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:35.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:35.591][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-15 01:05:35.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-15 01:05:35.594][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:35.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:35.596][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-15 01:05:35.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-15 01:05:35.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:35.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:35.601][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-15 01:05:35.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-15 01:05:35.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:35.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:35.606][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-15 01:05:35.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-15 01:05:35.609][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:35.610][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:35.611][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-15 01:05:35.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-15 01:05:35.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:35.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:35.616][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-15 01:05:35.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-15 01:05:35.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:35.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-15 01:05:35.621][self$createEntryFromContent] Accession numbers: 85084.
biodb.TRACE[2025-08-15 01:05:35.623][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:35.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:35.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:35.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:35.628][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:35.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:35.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:35.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:35.633][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:35.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:35.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:35.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-15 01:05:35.637][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-15 01:05:35.639][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-15 01:05:35.640][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-15 01:05:35.650][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-15 01:05:35.652][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-15 01:05:35.653][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-15 01:05:35.654][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-15 01:05:35.655][private$loadEntries] Creating entries from ids [1]: "85086".
biodb.DEBUG[2025-08-15 01:05:35.657][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-08-15 01:05:35.659][cch$loadContents] Load 1 contents, from C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-08-15 01:05:35.677][FUN] Found encoding ISO-8859-1 for file C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/85086.xml.
biodb.DEBUG[2025-08-15 01:05:35.678][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-15 01:05:35.680][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-15 01:05:35.681][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-15 01:05:35.683][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-15 01:05:35.685][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-15 01:05:35.686][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-15 01:05:35.728][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-15 01:05:35.730][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-15 01:05:35.731][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-15 01:05:35.732][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-15 01:05:35.735][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-15 01:05:35.736][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-15 01:05:35.738][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:35.740][ef$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:35.742][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-15 01:05:35.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-15 01:05:35.744][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:35.745][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:35.747][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-15 01:05:35.748][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-15 01:05:35.750][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:35.751][ef$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:35.753][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-15 01:05:35.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-15 01:05:35.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:35.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:35.759][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-15 01:05:35.761][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-15 01:05:35.762][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:35.763][ef$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:35.765][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-15 01:05:35.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-15 01:05:35.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:35.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:35.770][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-15 01:05:35.772][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-15 01:05:35.773][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:35.774][ef$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:35.776][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-15 01:05:35.777][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-15 01:05:35.778][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:35.779][ef$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:35.781][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-15 01:05:35.783][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-15 01:05:35.785][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:35.787][ef$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:35.789][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-15 01:05:35.792][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:35.793][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:35.795][ef$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:35.796][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-15 01:05:35.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:35.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:35.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:35.802][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:35.803][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:35.804][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:35.805][ef$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:35.807][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:35.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:35.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:35.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:35.812][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-15 01:05:35.813][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-15 01:05:35.815][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:35.816][ef$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:35.818][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-15 01:05:35.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-15 01:05:35.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:35.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:35.823][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-15 01:05:35.825][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-15 01:05:35.826][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:35.827][ef$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:35.829][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-15 01:05:35.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-15 01:05:35.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:35.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:35.834][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-15 01:05:35.835][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-15 01:05:35.836][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:35.837][ef$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:35.839][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-15 01:05:35.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-15 01:05:35.842][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:35.843][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:35.844][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-15 01:05:35.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-15 01:05:35.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:35.848][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:35.849][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-15 01:05:35.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-15 01:05:35.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:35.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:35.854][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-15 01:05:35.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-15 01:05:35.858][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:35.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:35.862][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-15 01:05:35.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-15 01:05:35.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:35.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:35.870][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-15 01:05:35.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-15 01:05:35.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:35.876][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:35.878][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-15 01:05:35.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-15 01:05:35.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:35.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:35.883][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-15 01:05:35.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-15 01:05:35.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:35.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:35.888][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-15 01:05:35.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-15 01:05:35.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:35.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:35.893][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-15 01:05:35.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-15 01:05:35.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:35.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-15 01:05:35.898][self$createEntryFromContent] Accession numbers: 85086.
biodb.TRACE[2025-08-15 01:05:35.899][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:35.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:35.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:35.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:35.904][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:35.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:35.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:35.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:35.912][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:35.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:35.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:35.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-15 01:05:35.920][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-15 01:05:35.921][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-15 01:05:35.923][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-15 01:05:35.934][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-15 01:05:35.936][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-15 01:05:35.938][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-15 01:05:35.940][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-15 01:05:35.943][private$loadEntries] Creating entries from ids [1]: "88123".
biodb.DEBUG[2025-08-15 01:05:35.945][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-08-15 01:05:35.948][cch$loadContents] Load 1 contents, from C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-08-15 01:05:35.967][FUN] Found encoding ISO-8859-1 for file C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/88123.xml.
biodb.DEBUG[2025-08-15 01:05:35.968][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-15 01:05:35.970][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-15 01:05:35.972][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-15 01:05:35.974][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-15 01:05:35.975][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-15 01:05:35.976][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-15 01:05:35.996][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-15 01:05:35.997][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-15 01:05:35.999][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-15 01:05:36.000][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-15 01:05:36.003][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-15 01:05:36.004][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-15 01:05:36.005][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:36.007][ef$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:36.008][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-15 01:05:36.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-15 01:05:36.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:36.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:36.014][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-15 01:05:36.015][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-15 01:05:36.016][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:36.017][ef$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:36.019][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-15 01:05:36.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-15 01:05:36.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:36.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:36.024][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-15 01:05:36.026][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-15 01:05:36.027][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:36.028][ef$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:36.030][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-15 01:05:36.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-15 01:05:36.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:36.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:36.035][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-15 01:05:36.037][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-15 01:05:36.039][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:36.041][ef$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:36.043][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-15 01:05:36.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-15 01:05:36.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:36.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:36.051][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-15 01:05:36.053][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-15 01:05:36.055][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:36.056][ef$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:36.059][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-15 01:05:36.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-15 01:05:36.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:36.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:36.067][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-15 01:05:36.069][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-15 01:05:36.070][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:36.072][ef$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:36.073][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-15 01:05:36.075][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:36.076][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:36.077][ef$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:36.078][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-15 01:05:36.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:36.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:36.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:36.083][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:36.085][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:36.086][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:36.087][ef$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:36.089][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:36.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:36.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:36.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:36.094][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-15 01:05:36.095][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-15 01:05:36.097][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:36.098][ef$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:36.100][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-15 01:05:36.101][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-15 01:05:36.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:36.103][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:36.105][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-15 01:05:36.107][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-15 01:05:36.108][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:36.109][ef$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:36.112][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-15 01:05:36.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-15 01:05:36.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:36.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:36.119][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-15 01:05:36.120][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-15 01:05:36.122][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:36.123][ef$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:36.125][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-15 01:05:36.126][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-15 01:05:36.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:36.128][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:36.130][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-15 01:05:36.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-15 01:05:36.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:36.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:36.135][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-15 01:05:36.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-15 01:05:36.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:36.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:36.140][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-15 01:05:36.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-15 01:05:36.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:36.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:36.145][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-15 01:05:36.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-15 01:05:36.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:36.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:36.150][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-15 01:05:36.152][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-15 01:05:36.153][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:36.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:36.155][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-15 01:05:36.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-15 01:05:36.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:36.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:36.160][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-15 01:05:36.162][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-15 01:05:36.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:36.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:36.166][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-15 01:05:36.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-15 01:05:36.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:36.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:36.171][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-15 01:05:36.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-15 01:05:36.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:36.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:36.176][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-15 01:05:36.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-15 01:05:36.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:36.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-15 01:05:36.181][self$createEntryFromContent] Accession numbers: 88123.
biodb.TRACE[2025-08-15 01:05:36.182][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:36.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:36.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:36.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:36.188][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:36.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:36.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:36.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:36.193][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:36.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:36.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:36.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-15 01:05:36.198][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-15 01:05:36.199][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-15 01:05:36.200][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-15 01:05:36.210][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-15 01:05:36.212][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-15 01:05:36.214][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-15 01:05:36.215][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-15 01:05:36.216][private$loadEntries] Creating entries from ids [1]: "134117".
biodb.DEBUG[2025-08-15 01:05:36.217][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-08-15 01:05:36.219][cch$loadContents] Load 1 contents, from C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-08-15 01:05:36.244][FUN] Found encoding ISO-8859-1 for file C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/134117.xml.
biodb.DEBUG[2025-08-15 01:05:36.247][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-15 01:05:36.249][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-15 01:05:36.250][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-15 01:05:36.252][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-15 01:05:36.254][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-15 01:05:36.255][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-15 01:05:36.271][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-15 01:05:36.273][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-15 01:05:36.275][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-15 01:05:36.277][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-15 01:05:36.280][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-15 01:05:36.282][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-15 01:05:36.283][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:36.284][ef$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:36.286][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-15 01:05:36.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-15 01:05:36.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:36.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:36.291][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-15 01:05:36.293][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-15 01:05:36.294][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:36.296][ef$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:36.298][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-15 01:05:36.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-15 01:05:36.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:36.304][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:36.307][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-15 01:05:36.309][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-15 01:05:36.311][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:36.313][ef$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:36.315][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-15 01:05:36.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-15 01:05:36.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:36.322][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:36.324][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-15 01:05:36.327][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-15 01:05:36.329][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:36.330][ef$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:36.332][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-15 01:05:36.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-15 01:05:36.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:36.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:36.337][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-15 01:05:36.338][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-15 01:05:36.339][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:36.340][ef$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:36.342][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-15 01:05:36.343][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-15 01:05:36.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:36.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:36.347][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-15 01:05:36.348][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-15 01:05:36.350][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:36.351][ef$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:36.352][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-15 01:05:36.354][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:36.355][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:36.356][ef$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:36.358][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-15 01:05:36.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:36.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:36.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:36.363][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:36.365][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:36.366][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:36.367][ef$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:36.369][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:36.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:36.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:36.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:36.374][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-15 01:05:36.376][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-15 01:05:36.377][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:36.378][ef$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:36.380][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-15 01:05:36.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-15 01:05:36.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:36.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:36.385][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-15 01:05:36.386][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-15 01:05:36.388][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:36.389][ef$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:36.390][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-15 01:05:36.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-15 01:05:36.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:36.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:36.396][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-15 01:05:36.397][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-15 01:05:36.398][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:36.399][ef$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:36.401][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-15 01:05:36.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-15 01:05:36.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:36.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:36.406][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-15 01:05:36.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-15 01:05:36.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:36.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:36.411][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-15 01:05:36.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-15 01:05:36.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:36.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:36.416][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-15 01:05:36.418][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-15 01:05:36.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:36.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:36.421][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-15 01:05:36.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-15 01:05:36.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:36.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:36.426][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-15 01:05:36.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-15 01:05:36.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:36.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:36.432][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-15 01:05:36.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-15 01:05:36.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:36.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:36.437][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-15 01:05:36.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-15 01:05:36.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:36.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:36.442][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-15 01:05:36.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-15 01:05:36.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:36.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:36.447][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-15 01:05:36.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-15 01:05:36.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:36.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:36.452][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-15 01:05:36.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-15 01:05:36.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:36.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-15 01:05:36.457][self$createEntryFromContent] Accession numbers: 134117.
biodb.TRACE[2025-08-15 01:05:36.458][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:36.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:36.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:36.462][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:36.463][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:36.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:36.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:36.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:36.468][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:36.469][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:36.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:36.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-15 01:05:36.473][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-15 01:05:36.474][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-15 01:05:36.475][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-15 01:05:36.488][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-15 01:05:36.489][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-15 01:05:36.490][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-15 01:05:36.492][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-15 01:05:36.493][private$loadEntries] Creating entries from ids [1]: "138307".
biodb.DEBUG[2025-08-15 01:05:36.494][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-08-15 01:05:36.496][cch$loadContents] Load 1 contents, from C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-08-15 01:05:36.514][FUN] Found encoding ISO-8859-1 for file C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/138307.xml.
biodb.DEBUG[2025-08-15 01:05:36.516][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-15 01:05:36.518][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-15 01:05:36.519][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-15 01:05:36.521][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-15 01:05:36.522][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-15 01:05:36.523][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-15 01:05:36.530][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-15 01:05:36.531][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-15 01:05:36.532][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-15 01:05:36.533][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-15 01:05:36.536][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-15 01:05:36.537][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-15 01:05:36.539][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:36.540][ef$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:36.541][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-15 01:05:36.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-15 01:05:36.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:36.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:36.546][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-15 01:05:36.548][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-15 01:05:36.549][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:36.550][ef$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:36.552][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-15 01:05:36.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-15 01:05:36.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:36.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:36.557][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-15 01:05:36.558][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-15 01:05:36.560][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:36.561][ef$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:36.562][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-15 01:05:36.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-15 01:05:36.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:36.566][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:36.567][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-15 01:05:36.569][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-15 01:05:36.570][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:36.571][ef$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:36.572][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-15 01:05:36.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-15 01:05:36.575][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:36.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:36.578][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-15 01:05:36.579][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-15 01:05:36.580][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:36.581][ef$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:36.583][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-15 01:05:36.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-15 01:05:36.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:36.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:36.588][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-15 01:05:36.589][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-15 01:05:36.590][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:36.592][ef$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:36.594][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-15 01:05:36.596][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:36.597][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:36.599][ef$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:36.601][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-15 01:05:36.603][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:36.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:36.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:36.609][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:36.611][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:36.612][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:36.614][ef$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:36.616][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:36.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:36.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:36.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:36.624][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-15 01:05:36.625][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-15 01:05:36.627][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:36.629][ef$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:36.631][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-15 01:05:36.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-15 01:05:36.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:36.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:36.638][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-15 01:05:36.640][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-15 01:05:36.642][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:36.644][ef$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:36.646][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-15 01:05:36.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-15 01:05:36.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:36.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:36.651][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-15 01:05:36.653][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-15 01:05:36.654][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:36.655][ef$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:36.658][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-15 01:05:36.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-15 01:05:36.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:36.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:36.666][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-15 01:05:36.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-15 01:05:36.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:36.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:36.674][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-15 01:05:36.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-15 01:05:36.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:36.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:36.682][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-15 01:05:36.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-15 01:05:36.686][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:36.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:36.690][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-15 01:05:36.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-15 01:05:36.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:36.696][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:36.698][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-15 01:05:36.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-15 01:05:36.702][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:36.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:36.706][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-15 01:05:36.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-15 01:05:36.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:36.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:36.714][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-15 01:05:36.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-15 01:05:36.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:36.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:36.722][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-15 01:05:36.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-15 01:05:36.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:36.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:36.729][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-15 01:05:36.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-15 01:05:36.733][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:36.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:36.737][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-15 01:05:36.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-15 01:05:36.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:36.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-15 01:05:36.744][self$createEntryFromContent] Accession numbers: 138307.
biodb.TRACE[2025-08-15 01:05:36.746][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:36.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:36.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:36.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:36.762][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:36.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:36.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:36.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:36.771][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:36.773][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:36.775][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:36.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-15 01:05:36.779][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-15 01:05:36.781][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-15 01:05:36.782][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-15 01:05:36.793][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-15 01:05:36.796][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-15 01:05:36.797][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-15 01:05:36.799][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-15 01:05:36.802][private$loadEntries] Creating entries from ids [1]: "176803".
biodb.DEBUG[2025-08-15 01:05:36.804][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-08-15 01:05:36.807][cch$loadContents] Load 1 contents, from C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-08-15 01:05:36.826][FUN] Found encoding ISO-8859-1 for file C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/176803.xml.
biodb.DEBUG[2025-08-15 01:05:36.828][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-15 01:05:36.830][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-15 01:05:36.831][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-15 01:05:36.833][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-15 01:05:36.834][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-15 01:05:36.835][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-15 01:05:36.845][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-15 01:05:36.846][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-15 01:05:36.847][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-15 01:05:36.848][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-15 01:05:36.851][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-15 01:05:36.853][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-15 01:05:36.854][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:36.855][ef$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:36.856][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-15 01:05:36.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-15 01:05:36.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:36.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:36.861][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-15 01:05:36.863][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-15 01:05:36.864][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:36.865][ef$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:36.867][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-15 01:05:36.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-15 01:05:36.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:36.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:36.873][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-15 01:05:36.875][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-15 01:05:36.877][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:36.879][ef$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:36.881][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-15 01:05:36.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-15 01:05:36.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:36.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:36.890][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-15 01:05:36.892][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-15 01:05:36.894][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:36.896][ef$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:36.898][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-15 01:05:36.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-15 01:05:36.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:36.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:36.904][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-15 01:05:36.906][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-15 01:05:36.907][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:36.909][ef$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:36.912][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-15 01:05:36.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-15 01:05:36.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:36.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:36.919][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-15 01:05:36.922][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-15 01:05:36.923][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:36.925][ef$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:36.927][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-15 01:05:36.929][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:36.931][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:36.933][ef$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:36.936][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-15 01:05:36.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:36.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:36.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:36.943][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:36.945][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:36.947][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:36.949][ef$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:36.952][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:36.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:36.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:36.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:36.959][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-15 01:05:36.961][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-15 01:05:36.963][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:36.965][ef$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:36.968][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-15 01:05:36.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-15 01:05:36.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:36.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:36.976][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-15 01:05:36.978][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-15 01:05:36.980][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:36.982][ef$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:36.984][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-15 01:05:36.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-15 01:05:36.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:36.990][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:36.992][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-15 01:05:36.994][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-15 01:05:36.996][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:36.998][ef$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:37.000][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-15 01:05:37.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-15 01:05:37.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:37.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:37.008][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-15 01:05:37.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-15 01:05:37.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:37.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:37.016][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-15 01:05:37.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-15 01:05:37.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:37.022][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:37.024][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-15 01:05:37.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-15 01:05:37.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:37.030][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:37.031][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-15 01:05:37.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-15 01:05:37.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:37.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:37.036][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-15 01:05:37.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-15 01:05:37.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:37.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:37.041][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-15 01:05:37.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-15 01:05:37.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:37.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:37.046][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-15 01:05:37.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-15 01:05:37.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:37.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:37.051][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-15 01:05:37.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-15 01:05:37.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:37.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:37.056][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-15 01:05:37.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-15 01:05:37.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:37.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:37.067][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-15 01:05:37.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-15 01:05:37.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:37.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-15 01:05:37.072][self$createEntryFromContent] Accession numbers: 176803.
biodb.TRACE[2025-08-15 01:05:37.074][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:37.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:37.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:37.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:37.079][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:37.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:37.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:37.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:37.084][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:37.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:37.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:37.087][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-15 01:05:37.089][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-15 01:05:37.090][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-15 01:05:37.091][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-15 01:05:37.098][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-15 01:05:37.100][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-15 01:05:37.101][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-15 01:05:37.102][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-15 01:05:37.104][private$loadEntries] Creating entries from ids [1]: "176962".
biodb.DEBUG[2025-08-15 01:05:37.105][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-08-15 01:05:37.107][cch$loadContents] Load 1 contents, from C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-08-15 01:05:37.167][FUN] Found encoding ISO-8859-1 for file C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/176962.xml.
biodb.DEBUG[2025-08-15 01:05:37.168][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-15 01:05:37.170][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-15 01:05:37.172][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-15 01:05:37.174][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-15 01:05:37.175][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-15 01:05:37.176][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-15 01:05:37.186][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-15 01:05:37.187][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-15 01:05:37.189][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-15 01:05:37.190][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-15 01:05:37.192][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-15 01:05:37.194][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-15 01:05:37.195][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:37.196][ef$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:37.198][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-15 01:05:37.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-15 01:05:37.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:37.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:37.203][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-15 01:05:37.204][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-15 01:05:37.205][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:37.207][ef$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:37.208][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-15 01:05:37.209][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-15 01:05:37.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:37.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:37.213][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-15 01:05:37.214][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-15 01:05:37.216][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:37.217][ef$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:37.218][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-15 01:05:37.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-15 01:05:37.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:37.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:37.223][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-15 01:05:37.225][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-15 01:05:37.226][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:37.227][ef$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:37.229][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-15 01:05:37.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-15 01:05:37.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:37.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:37.234][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-15 01:05:37.235][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-15 01:05:37.236][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:37.237][ef$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:37.239][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-15 01:05:37.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-15 01:05:37.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:37.243][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:37.244][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-15 01:05:37.245][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-15 01:05:37.246][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:37.248][ef$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:37.249][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-15 01:05:37.251][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:37.252][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:37.253][ef$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:37.254][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-15 01:05:37.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:37.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:37.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:37.260][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:37.261][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:37.262][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:37.263][ef$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:37.265][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:37.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:37.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:37.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:37.271][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-15 01:05:37.272][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-15 01:05:37.273][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:37.275][ef$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:37.276][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-15 01:05:37.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-15 01:05:37.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:37.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:37.283][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-15 01:05:37.285][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-15 01:05:37.286][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:37.288][ef$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:37.290][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-15 01:05:37.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-15 01:05:37.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:37.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:37.295][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-15 01:05:37.297][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-15 01:05:37.298][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:37.299][ef$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:37.300][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-15 01:05:37.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-15 01:05:37.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:37.304][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:37.305][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-15 01:05:37.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-15 01:05:37.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:37.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:37.310][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-15 01:05:37.312][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-15 01:05:37.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:37.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:37.315][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-15 01:05:37.317][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-15 01:05:37.318][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:37.319][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:37.320][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-15 01:05:37.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-15 01:05:37.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:37.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:37.325][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-15 01:05:37.327][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-15 01:05:37.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:37.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:37.331][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-15 01:05:37.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-15 01:05:37.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:37.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:37.342][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-15 01:05:37.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-15 01:05:37.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:37.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:37.348][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-15 01:05:37.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-15 01:05:37.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:37.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:37.353][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-15 01:05:37.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-15 01:05:37.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:37.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:37.360][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-15 01:05:37.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-15 01:05:37.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:37.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-15 01:05:37.365][self$createEntryFromContent] Accession numbers: 176962.
biodb.TRACE[2025-08-15 01:05:37.366][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:37.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:37.369][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:37.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:37.373][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:37.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:37.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:37.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:37.378][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:37.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:37.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:37.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-15 01:05:37.383][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-15 01:05:37.384][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-15 01:05:37.385][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-15 01:05:37.404][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-15 01:05:37.406][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-15 01:05:37.408][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-15 01:05:37.410][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-15 01:05:37.413][private$loadEntries] Creating entries from ids [1]: "198655".
biodb.DEBUG[2025-08-15 01:05:37.415][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-08-15 01:05:37.418][cch$loadContents] Load 1 contents, from C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-08-15 01:05:37.437][FUN] Found encoding ISO-8859-1 for file C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/198655.xml.
biodb.DEBUG[2025-08-15 01:05:37.438][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-15 01:05:37.440][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-15 01:05:37.441][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-15 01:05:37.443][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-15 01:05:37.444][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-15 01:05:37.445][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-15 01:05:37.453][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-15 01:05:37.454][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-15 01:05:37.455][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-15 01:05:37.456][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-15 01:05:37.459][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-15 01:05:37.460][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-15 01:05:37.462][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:37.463][ef$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:37.464][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-15 01:05:37.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-15 01:05:37.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:37.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:37.470][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-15 01:05:37.471][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-15 01:05:37.473][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:37.474][ef$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:37.475][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-15 01:05:37.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-15 01:05:37.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:37.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:37.481][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-15 01:05:37.482][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-15 01:05:37.483][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:37.484][ef$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:37.486][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-15 01:05:37.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-15 01:05:37.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:37.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:37.491][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-15 01:05:37.492][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-15 01:05:37.494][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:37.495][ef$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:37.496][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-15 01:05:37.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-15 01:05:37.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:37.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:37.501][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-15 01:05:37.503][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-15 01:05:37.504][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:37.505][ef$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:37.507][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-15 01:05:37.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-15 01:05:37.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:37.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:37.512][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-15 01:05:37.513][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-15 01:05:37.514][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:37.516][ef$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:37.518][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-15 01:05:37.520][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:37.522][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:37.524][ef$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:37.526][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-15 01:05:37.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:37.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:37.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:37.534][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:37.537][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:37.538][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:37.540][ef$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:37.542][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:37.545][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:37.546][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:37.548][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:37.551][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-15 01:05:37.553][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-15 01:05:37.554][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:37.556][ef$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:37.559][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-15 01:05:37.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-15 01:05:37.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:37.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:37.567][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-15 01:05:37.569][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-15 01:05:37.571][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:37.573][ef$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:37.576][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-15 01:05:37.578][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-15 01:05:37.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:37.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:37.584][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-15 01:05:37.586][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-15 01:05:37.588][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:37.590][ef$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:37.593][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-15 01:05:37.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-15 01:05:37.597][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:37.598][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:37.601][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-15 01:05:37.603][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-15 01:05:37.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:37.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:37.609][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-15 01:05:37.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-15 01:05:37.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:37.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:37.617][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-15 01:05:37.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-15 01:05:37.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:37.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:37.633][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-15 01:05:37.635][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-15 01:05:37.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:37.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:37.641][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-15 01:05:37.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-15 01:05:37.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:37.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:37.649][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-15 01:05:37.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-15 01:05:37.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:37.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:37.657][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-15 01:05:37.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-15 01:05:37.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:37.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:37.665][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-15 01:05:37.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-15 01:05:37.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:37.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:37.673][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-15 01:05:37.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-15 01:05:37.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:37.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:37.681][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-15 01:05:37.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-15 01:05:37.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:37.686][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-15 01:05:38.538][self$createEntryFromContent] Accession numbers: 198655.
biodb.TRACE[2025-08-15 01:05:38.540][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:38.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:38.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:38.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:38.885][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:38.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:38.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:38.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:38.891][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:38.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:38.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:38.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-15 01:05:38.898][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-15 01:05:38.899][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-15 01:05:38.901][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-15 01:05:43.730][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-15 01:05:43.732][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-15 01:05:43.733][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-15 01:05:43.735][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-15 01:05:43.736][private$loadEntries] Creating entries from ids [1]: "215045".
biodb.DEBUG[2025-08-15 01:05:43.738][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-08-15 01:05:44.376][cch$loadContents] Load 1 contents, from C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-08-15 01:05:44.893][FUN] Found encoding ISO-8859-1 for file C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/215045.xml.
biodb.DEBUG[2025-08-15 01:05:44.895][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-15 01:05:44.897][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-15 01:05:44.899][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-15 01:05:44.901][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-15 01:05:44.903][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-15 01:05:44.904][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-15 01:05:45.479][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-15 01:05:45.480][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-15 01:05:45.482][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-15 01:05:45.483][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-15 01:05:45.487][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-15 01:05:45.488][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-15 01:05:45.836][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:45.838][ef$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:45.840][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-15 01:05:45.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-15 01:05:45.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:45.845][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:45.847][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-15 01:05:45.848][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-15 01:05:45.850][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:45.851][ef$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:45.853][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-15 01:05:45.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-15 01:05:45.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:45.858][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:45.859][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-15 01:05:45.861][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-15 01:05:45.863][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:45.864][ef$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:45.866][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-15 01:05:45.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-15 01:05:45.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:45.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:45.873][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-15 01:05:45.874][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-15 01:05:45.876][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:45.877][ef$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:45.879][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-15 01:05:45.881][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-15 01:05:45.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:45.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:45.885][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-15 01:05:45.887][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-15 01:05:45.888][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:45.890][ef$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:45.892][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-15 01:05:45.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-15 01:05:45.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:45.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:45.898][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-15 01:05:45.900][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-15 01:05:45.901][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:45.903][ef$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:45.905][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-15 01:05:45.906][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:45.908][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:45.909][ef$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:45.911][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-15 01:05:45.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:45.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:45.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:45.918][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:45.920][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:45.921][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:45.923][ef$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:45.925][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:45.926][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:45.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:45.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:45.931][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-15 01:05:45.932][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-15 01:05:45.934][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:45.935][ef$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:45.937][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-15 01:05:45.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-15 01:05:45.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:45.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:45.944][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-15 01:05:45.945][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-15 01:05:45.947][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:45.948][ef$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:45.950][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-15 01:05:45.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-15 01:05:45.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:45.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:45.957][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-15 01:05:45.958][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-15 01:05:45.960][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:45.961][ef$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:45.963][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-15 01:05:45.973][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-15 01:05:45.974][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:45.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:45.978][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-15 01:05:45.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-15 01:05:45.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:45.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:45.984][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-15 01:05:45.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-15 01:05:45.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:45.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:45.990][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-15 01:05:45.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-15 01:05:45.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:45.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:45.997][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-15 01:05:45.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-15 01:05:46.000][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:46.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:46.003][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-15 01:05:46.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-15 01:05:46.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:46.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:46.009][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-15 01:05:46.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-15 01:05:46.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:46.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:46.015][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-15 01:05:46.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-15 01:05:46.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:46.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:46.022][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-15 01:05:46.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-15 01:05:46.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:46.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:46.028][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-15 01:05:46.030][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-15 01:05:46.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:46.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:46.034][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-15 01:05:46.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-15 01:05:46.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:46.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-15 01:05:46.041][self$createEntryFromContent] Accession numbers: 215045.
biodb.TRACE[2025-08-15 01:05:46.043][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:46.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:46.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:46.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:46.049][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:46.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:46.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:46.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:46.055][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:46.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:46.058][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:46.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
sched.DEBUG[2025-08-15 01:05:47.360][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-08-15 01:05:47.365][private$cache$loadContents] Load 1 contents, from C:\Users\biocbuild\AppData\Local/R/cache/R/sched.
fscache.DEBUG[2025-08-15 01:05:47.372][FUN] Found encoding ISO-8859-1 for file C:\Users\biocbuild\AppData\Local/R/cache/R/sched/80cdc67a2a6332dd4ceb98b7656194b9.content.
sched.DEBUG[2025-08-15 01:05:47.374][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-08-15 01:05:47.380][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-15 01:05:47.382][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-15 01:05:47.428][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-15 01:05:47.480][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-15 01:05:47.481][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-15 01:05:47.483][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-15 01:05:47.485][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-15 01:05:47.499][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:47.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:47.503][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:47.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:47.507][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:47.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:47.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:47.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:47.515][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:47.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:47.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:47.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-15 01:05:47.524][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-15 01:05:47.525][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-15 01:05:47.527][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-15 01:05:47.562][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-15 01:05:47.564][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-15 01:05:47.566][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-15 01:05:47.575][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-15 01:05:47.579][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:47.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:47.584][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:47.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:47.589][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:47.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:47.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:47.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:47.596][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:47.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:47.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:47.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:47.603][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:47.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:47.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:47.608][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:47.609][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:47.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:47.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:47.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-15 01:05:47.620][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-15 01:05:47.622][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-15 01:05:47.624][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-15 01:05:47.661][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-15 01:05:47.663][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-15 01:05:47.664][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-15 01:05:47.666][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-15 01:05:47.668][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:47.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:47.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:47.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:47.674][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:47.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:47.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:47.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:47.680][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:47.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:47.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:47.686][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:47.688][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:47.690][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:47.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:47.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:47.702][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:47.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:47.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:47.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-15 01:05:47.709][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-15 01:05:47.711][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-15 01:05:47.712][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-15 01:05:47.732][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-15 01:05:47.734][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-15 01:05:47.736][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-15 01:05:47.738][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-15 01:05:47.741][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:47.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:47.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:47.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:47.749][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:47.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:47.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:47.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:47.758][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:47.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:47.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:47.764][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:47.766][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:47.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:47.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:47.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:47.774][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:47.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:47.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:47.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-15 01:05:47.782][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-15 01:05:47.784][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-15 01:05:47.786][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-15 01:05:47.799][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-15 01:05:47.801][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-15 01:05:47.803][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-15 01:05:47.805][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-15 01:05:47.807][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:47.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:47.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:47.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:47.815][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:47.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:47.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:47.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:47.824][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:47.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:47.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:47.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-15 01:05:47.832][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-15 01:05:47.834][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-15 01:05:47.836][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-15 01:05:47.847][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-15 01:05:47.849][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-15 01:05:47.851][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-15 01:05:47.853][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-15 01:05:47.855][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:47.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:47.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:47.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:47.863][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:47.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:47.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:47.869][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:47.871][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:47.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:47.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:47.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-15 01:05:47.879][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-15 01:05:47.881][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-15 01:05:47.883][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-15 01:05:47.892][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-15 01:05:47.894][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-15 01:05:47.895][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-15 01:05:47.897][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-15 01:05:47.898][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:47.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:47.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:47.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:47.905][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:47.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:47.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:47.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:47.912][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:47.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:47.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:47.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-15 01:05:47.917][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-15 01:05:47.918][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-15 01:05:47.919][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-15 01:05:47.932][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-15 01:05:47.934][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-15 01:05:47.935][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-15 01:05:47.936][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-15 01:05:47.938][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:47.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:47.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:47.943][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:47.944][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:47.946][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:47.947][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:47.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:47.950][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:47.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:47.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:47.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-15 01:05:47.957][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-15 01:05:47.958][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-15 01:05:47.959][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-15 01:05:47.967][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-15 01:05:47.969][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-15 01:05:47.970][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-15 01:05:47.971][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-15 01:05:47.973][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:47.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:47.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:47.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:47.979][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:47.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:47.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:47.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:47.985][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:47.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:47.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:47.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-15 01:05:47.990][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-15 01:05:47.992][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-15 01:05:47.993][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-15 01:05:48.001][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-15 01:05:48.003][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-15 01:05:48.004][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-15 01:05:48.005][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-15 01:05:48.007][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:48.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:48.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:48.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:48.019][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:48.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:48.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:48.022][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:48.024][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:48.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:48.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:48.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-15 01:05:48.029][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-15 01:05:48.030][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-15 01:05:48.032][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-15 01:05:48.042][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-15 01:05:48.044][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-15 01:05:48.045][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-15 01:05:48.046][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-15 01:05:48.048][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:48.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:48.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:48.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:48.053][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:48.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:48.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:48.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:48.058][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:48.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:48.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:48.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-15 01:05:48.064][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-15 01:05:48.065][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-15 01:05:48.066][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-15 01:05:48.073][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-15 01:05:48.075][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-15 01:05:48.076][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-15 01:05:48.077][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-15 01:05:48.079][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:48.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:48.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:48.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:48.084][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:48.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:48.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:48.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:48.090][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:48.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:48.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:48.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-15 01:05:48.095][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-15 01:05:48.096][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-15 01:05:48.098][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-15 01:05:48.105][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-15 01:05:48.107][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-15 01:05:48.108][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-15 01:05:48.109][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-15 01:05:48.111][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:48.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:48.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:48.115][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:48.116][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:48.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:48.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:48.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:48.122][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:48.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:48.124][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:48.125][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-15 01:05:48.127][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-15 01:05:48.128][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-15 01:05:48.129][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-15 01:05:48.136][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-15 01:05:48.138][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-15 01:05:48.139][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-15 01:05:48.140][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-15 01:05:48.142][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:48.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:48.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:48.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:48.148][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:48.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:48.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:48.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:48.153][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:48.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:48.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:48.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-15 01:05:48.158][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-15 01:05:48.159][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-15 01:05:48.160][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-15 01:05:48.170][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-15 01:05:48.172][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-15 01:05:48.174][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-15 01:05:48.176][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-15 01:05:48.178][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:48.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:48.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:48.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:48.186][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:48.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:48.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:48.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:48.194][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:48.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:48.198][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:48.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-15 01:05:48.202][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-15 01:05:48.204][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-15 01:05:48.206][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-15 01:05:48.217][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-15 01:05:48.219][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-15 01:05:48.221][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-15 01:05:48.223][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-15 01:05:48.225][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:48.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:48.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:48.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:48.233][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:48.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:48.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:48.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:48.240][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:48.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:48.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:48.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-15 01:05:48.247][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-15 01:05:48.249][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-15 01:05:48.250][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-15 01:05:48.263][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-15 01:05:48.265][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-15 01:05:48.267][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-15 01:05:48.270][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-15 01:05:48.272][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:48.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:48.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:48.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:48.289][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:48.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:48.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:48.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:48.299][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:48.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:48.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:48.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-15 01:05:48.307][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-15 01:05:48.309][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-15 01:05:48.311][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-15 01:05:48.321][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-15 01:05:48.323][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-15 01:05:48.325][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-15 01:05:48.327][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-15 01:05:48.329][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:48.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:48.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:48.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:48.336][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:48.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:48.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:48.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:48.342][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:48.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:48.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:48.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-15 01:05:48.350][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-15 01:05:48.352][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-15 01:05:48.354][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-15 01:05:48.372][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-15 01:05:48.373][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-15 01:05:48.375][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-15 01:05:48.376][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-15 01:05:48.377][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:48.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:48.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:48.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:48.383][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:48.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:48.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:48.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:48.388][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:48.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:48.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:48.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-15 01:05:48.393][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-15 01:05:48.394][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-15 01:05:48.395][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-15 01:05:48.402][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-15 01:05:48.403][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-15 01:05:48.404][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-15 01:05:48.405][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-15 01:05:48.407][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:48.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:48.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:48.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:48.413][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:48.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:48.416][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:48.417][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:48.418][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:48.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:48.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:48.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:48.448][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:48.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:48.452][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:48.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:48.457][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:48.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:48.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:48.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:48.465][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:48.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:48.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:48.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:48.477][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:48.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:48.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:48.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:48.485][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:48.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:48.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:48.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
sched.DEBUG[2025-08-15 01:05:48.532][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39124*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-08-15 01:05:48.537][private$cache$loadContents] Load 1 contents, from C:\Users\biocbuild\AppData\Local/R/cache/R/sched.
fscache.DEBUG[2025-08-15 01:05:48.553][FUN] Found encoding ISO-8859-1 for file C:\Users\biocbuild\AppData\Local/R/cache/R/sched/63dc67d905e130c19900bd338bad7ba9.content.
sched.DEBUG[2025-08-15 01:05:48.554][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
sched.DEBUG[2025-08-15 01:05:48.559][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39125*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-08-15 01:05:48.562][private$cache$loadContents] Load 1 contents, from C:\Users\biocbuild\AppData\Local/R/cache/R/sched.
fscache.DEBUG[2025-08-15 01:05:48.585][FUN] Found encoding ISO-8859-1 for file C:\Users\biocbuild\AppData\Local/R/cache/R/sched/287cac4c6e727656d926f26e3952924c.content.
sched.DEBUG[2025-08-15 01:05:48.586][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-08-15 01:05:48.590][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-15 01:05:48.591][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-15 01:05:48.592][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-15 01:05:48.616][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-15 01:05:48.618][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-15 01:05:48.619][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-15 01:05:48.621][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-15 01:05:48.622][private$loadEntries] Creating entries from ids [1]: "4648".
biodb.DEBUG[2025-08-15 01:05:48.624][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-08-15 01:05:48.626][cch$loadContents] Load 1 contents, from C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-08-15 01:05:48.650][FUN] Found encoding ISO-8859-1 for file C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/4648.xml.
biodb.DEBUG[2025-08-15 01:05:48.652][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-15 01:05:48.654][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-15 01:05:48.656][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-15 01:05:48.658][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-15 01:05:48.659][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-15 01:05:48.661][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-15 01:05:48.670][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-15 01:05:48.671][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-15 01:05:48.673][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-15 01:05:48.675][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-15 01:05:48.678][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-15 01:05:48.681][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-15 01:05:48.682][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:48.683][ef$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:48.686][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-15 01:05:48.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-15 01:05:48.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:48.692][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:48.694][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-15 01:05:48.696][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-15 01:05:48.697][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:48.698][ef$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:48.700][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-15 01:05:48.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-15 01:05:48.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:48.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:48.706][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-15 01:05:48.708][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-15 01:05:48.709][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:48.711][ef$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:48.713][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-15 01:05:48.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-15 01:05:48.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:48.718][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:48.720][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-15 01:05:48.721][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-15 01:05:48.723][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:48.724][ef$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:48.726][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-15 01:05:48.728][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-15 01:05:48.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:48.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:48.732][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-15 01:05:48.734][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-15 01:05:48.736][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:48.738][ef$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:48.740][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-15 01:05:48.742][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-15 01:05:48.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:48.744][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:48.746][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-15 01:05:48.748][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-15 01:05:48.750][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:48.751][ef$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:48.753][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-15 01:05:48.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-15 01:05:48.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:48.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:48.759][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-15 01:05:48.762][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:48.763][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:48.764][ef$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:48.767][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-15 01:05:48.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:48.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:48.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:48.774][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:48.776][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:48.778][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:48.779][ef$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:48.781][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:48.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:48.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:48.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:48.787][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-15 01:05:48.789][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-15 01:05:48.790][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:48.792][ef$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:48.794][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-15 01:05:48.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-15 01:05:48.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:48.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:48.799][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-15 01:05:48.801][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-15 01:05:48.802][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:48.804][ef$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:48.806][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-15 01:05:48.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-15 01:05:48.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:48.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:48.812][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-15 01:05:48.814][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-15 01:05:48.816][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:48.817][ef$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:48.819][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-15 01:05:48.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-15 01:05:48.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:48.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:48.826][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-15 01:05:48.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-15 01:05:48.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:48.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:48.833][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-15 01:05:48.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-15 01:05:48.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:48.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:48.838][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-15 01:05:48.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-15 01:05:48.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:48.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:48.844][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-15 01:05:48.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-15 01:05:48.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:48.848][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:48.851][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-15 01:05:48.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-15 01:05:48.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:48.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:48.856][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-15 01:05:48.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-15 01:05:48.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:48.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:48.861][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-15 01:05:48.863][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-15 01:05:48.864][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:48.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:48.868][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-15 01:05:48.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-15 01:05:48.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:48.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:48.876][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-15 01:05:48.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-15 01:05:48.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:48.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:48.883][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-15 01:05:48.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-15 01:05:48.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:48.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-15 01:05:48.894][self$createEntryFromContent] Accession numbers: 4648.
biodb.TRACE[2025-08-15 01:05:48.896][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:48.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:48.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:48.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:48.903][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:48.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:48.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:48.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:48.909][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:48.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:48.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:48.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-15 01:05:48.916][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-15 01:05:48.917][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-15 01:05:48.919][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-15 01:05:48.926][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-15 01:05:48.928][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-15 01:05:48.929][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-15 01:05:48.930][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-15 01:05:48.932][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:48.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:48.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:48.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:48.938][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:48.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:48.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:48.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:48.943][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:48.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:48.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:48.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-15 01:05:48.949][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-15 01:05:48.950][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-15 01:05:48.952][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-15 01:05:48.962][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-15 01:05:48.963][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-15 01:05:48.965][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-15 01:05:48.966][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-15 01:05:48.967][private$loadEntries] Creating entries from ids [1]: "62447".
biodb.DEBUG[2025-08-15 01:05:48.969][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-08-15 01:05:48.971][cch$loadContents] Load 1 contents, from C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-08-15 01:05:48.998][FUN] Found encoding ISO-8859-1 for file C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/62447.xml.
biodb.DEBUG[2025-08-15 01:05:49.000][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-15 01:05:49.002][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-15 01:05:49.004][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-15 01:05:49.006][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-15 01:05:49.007][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-15 01:05:49.008][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-15 01:05:49.016][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-15 01:05:49.018][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-15 01:05:49.019][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-15 01:05:49.020][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-15 01:05:49.023][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-15 01:05:49.024][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-15 01:05:49.026][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:49.027][ef$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:49.028][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-15 01:05:49.030][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-15 01:05:49.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:49.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:49.033][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-15 01:05:49.035][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-15 01:05:49.036][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:49.037][ef$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:49.039][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-15 01:05:49.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-15 01:05:49.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:49.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:49.044][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-15 01:05:49.046][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-15 01:05:49.047][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:49.048][ef$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:49.050][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-15 01:05:49.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-15 01:05:49.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:49.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:49.055][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-15 01:05:49.056][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-15 01:05:49.057][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:49.058][ef$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:49.060][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-15 01:05:49.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-15 01:05:49.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:49.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:49.065][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-15 01:05:49.067][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-15 01:05:49.068][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:49.069][ef$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:49.070][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-15 01:05:49.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-15 01:05:49.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:49.074][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:49.076][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-15 01:05:49.077][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-15 01:05:49.078][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:49.079][ef$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:49.081][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-15 01:05:49.082][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:49.084][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:49.086][ef$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:49.088][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-15 01:05:49.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:49.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:49.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:49.093][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:49.095][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:49.096][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:49.098][ef$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:49.099][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:49.101][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:49.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:49.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:49.105][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-15 01:05:49.106][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-15 01:05:49.108][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:49.110][ef$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:49.113][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-15 01:05:49.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-15 01:05:49.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:49.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:49.121][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-15 01:05:49.122][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-15 01:05:49.124][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:49.125][ef$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:49.126][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-15 01:05:49.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-15 01:05:49.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:49.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:49.131][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-15 01:05:49.133][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-15 01:05:49.134][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:49.135][ef$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:49.137][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-15 01:05:49.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-15 01:05:49.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:49.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:49.142][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-15 01:05:49.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-15 01:05:49.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:49.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:49.154][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-15 01:05:49.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-15 01:05:49.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:49.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:49.163][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-15 01:05:49.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-15 01:05:49.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:49.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:49.172][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-15 01:05:49.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-15 01:05:49.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:49.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:49.180][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-15 01:05:49.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-15 01:05:49.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:49.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:49.189][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-15 01:05:49.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-15 01:05:49.193][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:49.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:49.197][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-15 01:05:49.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-15 01:05:49.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:49.203][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:49.206][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-15 01:05:49.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-15 01:05:49.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:49.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:49.214][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-15 01:05:49.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-15 01:05:49.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:49.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:49.222][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-15 01:05:49.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-15 01:05:49.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:49.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-15 01:05:49.228][self$createEntryFromContent] Accession numbers: 62447.
biodb.TRACE[2025-08-15 01:05:49.229][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:49.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:49.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:49.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:49.236][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:49.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:49.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:49.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:49.241][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:49.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:49.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:49.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
sched.DEBUG[2025-08-15 01:05:49.289][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-08-15 01:05:49.294][private$cache$loadContents] Load 1 contents, from C:\Users\biocbuild\AppData\Local/R/cache/R/sched.
fscache.DEBUG[2025-08-15 01:05:49.299][FUN] Found encoding ISO-8859-1 for file C:\Users\biocbuild\AppData\Local/R/cache/R/sched/80cdc67a2a6332dd4ceb98b7656194b9.content.
sched.DEBUG[2025-08-15 01:05:49.302][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-08-15 01:05:49.307][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-15 01:05:49.310][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-15 01:05:49.312][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-15 01:05:49.321][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-15 01:05:49.322][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-15 01:05:49.324][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-15 01:05:49.325][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-15 01:05:49.327][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:49.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:49.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:49.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:49.333][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:49.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:49.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:49.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:49.338][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:49.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:49.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:49.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-15 01:05:49.344][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-15 01:05:49.345][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-15 01:05:49.346][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-15 01:05:49.353][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-15 01:05:49.355][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-15 01:05:49.356][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-15 01:05:49.357][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-15 01:05:49.359][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:49.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:49.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:49.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:49.365][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:49.367][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:49.369][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:49.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:49.373][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:49.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:49.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:49.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:49.382][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:49.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:49.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:49.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:49.390][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:49.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:49.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:49.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-15 01:05:49.397][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-15 01:05:49.399][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-15 01:05:49.400][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-15 01:05:49.410][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-15 01:05:49.412][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-15 01:05:49.414][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-15 01:05:49.417][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-15 01:05:49.419][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:49.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:49.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:49.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:49.428][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:49.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:49.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:49.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:49.436][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:49.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:49.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:49.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:49.444][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:49.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:49.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:49.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:49.452][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:49.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:49.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:49.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-15 01:05:49.460][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-15 01:05:49.468][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-15 01:05:49.470][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-15 01:05:49.483][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-15 01:05:49.485][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-15 01:05:49.486][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-15 01:05:49.488][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-15 01:05:49.490][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:49.492][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:49.494][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:49.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:49.498][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:49.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:49.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:49.504][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:49.507][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:49.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:49.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:49.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:49.514][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:49.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:49.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:49.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:49.520][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:49.521][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:49.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:49.525][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-15 01:05:49.526][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-15 01:05:49.528][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-15 01:05:49.530][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-15 01:05:49.542][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-15 01:05:49.544][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-15 01:05:49.547][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-15 01:05:49.549][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-15 01:05:49.551][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:49.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:49.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:49.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:49.560][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:49.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:49.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:49.566][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:49.568][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:49.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:49.572][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:49.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-15 01:05:49.576][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-15 01:05:49.578][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-15 01:05:49.580][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-15 01:05:49.592][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-15 01:05:49.593][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-15 01:05:49.594][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-15 01:05:49.596][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-15 01:05:49.597][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:49.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:49.600][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:49.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:49.602][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:49.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:49.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:49.606][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:49.607][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:49.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:49.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:49.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-15 01:05:49.612][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-15 01:05:49.614][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-15 01:05:49.615][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-15 01:05:49.626][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-15 01:05:49.628][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-15 01:05:49.631][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-15 01:05:49.633][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-15 01:05:49.636][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:49.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:49.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:49.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:49.646][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:49.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:49.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:49.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:49.654][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:49.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:49.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:49.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-15 01:05:49.662][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-15 01:05:49.664][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-15 01:05:49.666][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-15 01:05:49.678][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-15 01:05:49.680][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-15 01:05:49.682][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-15 01:05:49.684][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-15 01:05:49.687][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:49.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:49.691][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:49.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:49.695][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:49.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:49.699][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:49.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:49.703][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:49.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:49.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:49.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-15 01:05:49.711][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-15 01:05:49.713][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-15 01:05:49.715][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-15 01:05:49.734][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-15 01:05:49.736][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-15 01:05:49.738][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-15 01:05:49.740][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-15 01:05:49.742][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:49.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:49.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:49.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:49.750][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:49.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:49.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:49.756][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:49.758][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:49.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:49.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:49.764][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-15 01:05:49.766][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-15 01:05:49.768][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-15 01:05:49.769][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-15 01:05:49.813][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-15 01:05:49.815][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-15 01:05:49.816][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-15 01:05:49.818][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-15 01:05:49.819][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:49.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:49.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:49.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:49.824][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:49.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:49.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:49.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:49.836][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:49.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:49.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:49.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-15 01:05:49.841][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-15 01:05:49.842][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-15 01:05:49.844][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-15 01:05:49.856][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-15 01:05:49.858][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-15 01:05:49.860][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-15 01:05:49.862][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-15 01:05:49.863][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:49.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:49.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:49.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:49.869][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:49.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:49.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:49.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:49.876][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:49.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:49.878][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:49.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-15 01:05:49.882][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-15 01:05:49.884][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-15 01:05:49.885][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-15 01:05:49.894][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-15 01:05:49.895][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-15 01:05:49.896][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-15 01:05:49.898][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-15 01:05:49.899][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:49.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:49.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:49.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:49.906][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:49.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:49.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:49.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:49.914][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:49.916][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:49.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:49.920][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-15 01:05:49.922][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-15 01:05:49.923][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-15 01:05:49.925][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-15 01:05:49.936][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-15 01:05:49.939][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-15 01:05:49.941][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-15 01:05:49.943][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-15 01:05:49.946][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:49.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:49.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:49.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:49.955][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:49.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:49.959][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:49.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:49.963][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:49.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:49.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:49.970][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-15 01:05:49.972][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-15 01:05:49.974][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-15 01:05:49.976][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-15 01:05:49.989][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-15 01:05:49.991][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-15 01:05:49.993][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-15 01:05:49.995][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-15 01:05:49.997][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:50.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:50.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:50.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:50.006][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:50.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:50.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:50.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:50.014][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:50.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:50.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:50.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-15 01:05:50.022][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-15 01:05:50.024][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-15 01:05:50.026][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-15 01:05:50.047][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-15 01:05:50.049][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-15 01:05:50.051][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-15 01:05:50.053][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-15 01:05:50.056][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:50.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:50.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:50.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:50.064][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:50.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:50.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:50.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:50.072][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:50.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:50.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:50.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-15 01:05:50.080][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-15 01:05:50.082][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-15 01:05:50.083][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-15 01:05:50.095][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-15 01:05:50.097][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-15 01:05:50.099][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-15 01:05:50.100][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-15 01:05:50.102][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:50.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:50.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:50.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:50.108][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:50.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:50.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:50.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:50.115][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:50.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:50.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:50.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-15 01:05:50.122][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-15 01:05:50.123][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-15 01:05:50.124][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-15 01:05:50.134][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-15 01:05:50.135][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-15 01:05:50.137][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-15 01:05:50.138][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-15 01:05:50.139][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:50.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:50.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:50.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:50.145][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:50.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:50.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:50.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:50.158][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:50.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:50.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:50.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-15 01:05:50.167][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-15 01:05:50.169][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-15 01:05:50.171][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-15 01:05:50.187][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-15 01:05:50.190][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-15 01:05:50.192][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-15 01:05:50.193][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-15 01:05:50.196][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:50.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:50.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:50.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:50.202][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:50.204][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:50.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:50.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:50.207][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:50.209][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:50.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:50.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-15 01:05:50.212][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-15 01:05:50.213][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-15 01:05:50.214][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-15 01:05:50.223][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-15 01:05:50.225][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-15 01:05:50.226][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-15 01:05:50.227][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-15 01:05:50.229][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:50.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:50.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:50.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:50.234][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:50.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:50.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:50.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:50.239][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:50.241][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:50.242][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:50.243][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-15 01:05:50.245][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-15 01:05:50.246][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-15 01:05:50.247][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-15 01:05:50.255][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-15 01:05:50.256][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-15 01:05:50.258][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-15 01:05:50.259][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-15 01:05:50.262][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:50.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:50.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:50.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:50.269][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:50.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:50.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:50.275][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:50.277][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:50.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:50.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:50.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
sched.DEBUG[2025-08-15 01:05:50.328][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-08-15 01:05:50.333][private$cache$loadContents] Load 1 contents, from C:\Users\biocbuild\AppData\Local/R/cache/R/sched.
fscache.DEBUG[2025-08-15 01:05:50.338][FUN] Found encoding ISO-8859-1 for file C:\Users\biocbuild\AppData\Local/R/cache/R/sched/80cdc67a2a6332dd4ceb98b7656194b9.content.
sched.DEBUG[2025-08-15 01:05:50.340][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-08-15 01:05:50.346][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-15 01:05:50.348][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-15 01:05:50.350][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-15 01:05:50.362][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-15 01:05:50.365][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-15 01:05:50.366][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-15 01:05:50.368][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-15 01:05:50.371][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:50.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:50.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:50.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:50.379][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:50.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:50.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:50.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:50.387][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:50.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:50.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:50.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-15 01:05:50.396][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-15 01:05:50.397][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-15 01:05:50.399][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-15 01:05:50.411][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-15 01:05:50.414][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-15 01:05:50.416][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-15 01:05:50.418][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-15 01:05:50.420][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:50.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:50.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:50.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:50.429][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:50.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:50.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:50.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:50.437][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:50.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:50.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:50.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:50.446][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:50.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:50.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:50.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:50.454][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:50.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:50.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:50.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-15 01:05:50.463][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-15 01:05:50.465][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-15 01:05:50.467][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-15 01:05:50.478][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-15 01:05:50.480][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-15 01:05:50.482][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-15 01:05:50.484][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-15 01:05:50.487][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:50.499][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:50.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:50.504][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:50.506][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:50.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:50.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:50.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:50.515][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:50.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:50.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:50.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:50.523][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:50.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:50.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:50.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:50.531][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:50.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:50.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:50.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-15 01:05:50.537][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-15 01:05:50.539][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-15 01:05:50.541][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-15 01:05:50.551][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-15 01:05:50.552][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-15 01:05:50.554][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-15 01:05:50.556][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-15 01:05:50.558][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:50.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:50.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:50.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:50.567][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:50.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:50.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:50.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:50.575][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:50.578][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:50.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:50.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:50.584][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:50.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:50.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:50.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:50.593][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:50.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:50.597][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:50.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-15 01:05:50.601][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-15 01:05:50.603][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-15 01:05:50.605][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-15 01:05:50.617][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-15 01:05:50.619][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-15 01:05:50.621][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-15 01:05:50.623][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-15 01:05:50.625][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:50.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:50.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:50.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:50.634][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:50.635][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:50.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:50.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:50.640][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:50.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:50.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:50.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-15 01:05:50.645][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-15 01:05:50.646][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-15 01:05:50.647][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-15 01:05:50.655][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-15 01:05:50.656][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-15 01:05:50.658][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-15 01:05:50.659][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-15 01:05:50.661][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:50.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:50.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:50.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:50.666][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:50.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:50.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:50.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:50.671][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:50.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:50.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:50.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-15 01:05:50.677][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-15 01:05:50.678][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-15 01:05:50.679][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-15 01:05:50.688][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-15 01:05:50.689][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-15 01:05:50.690][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-15 01:05:50.692][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-15 01:05:50.693][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:50.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:50.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:50.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:50.699][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:50.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:50.702][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:50.703][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:50.704][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:50.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:50.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:50.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-15 01:05:50.710][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-15 01:05:50.711][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-15 01:05:50.712][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-15 01:05:50.722][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-15 01:05:50.724][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-15 01:05:50.725][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-15 01:05:50.727][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-15 01:05:50.728][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:50.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:50.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:50.733][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:50.734][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:50.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:50.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:50.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:50.740][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:50.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:50.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:50.744][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-15 01:05:50.745][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-15 01:05:50.747][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-15 01:05:50.748][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-15 01:05:50.759][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-15 01:05:50.761][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-15 01:05:50.763][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-15 01:05:50.765][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-15 01:05:50.768][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:50.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:50.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:50.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:50.776][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:50.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:50.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:50.782][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:50.791][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:50.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:50.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:50.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-15 01:05:50.797][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-15 01:05:50.798][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-15 01:05:50.800][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-15 01:05:50.811][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-15 01:05:50.813][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-15 01:05:50.815][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-15 01:05:50.816][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-15 01:05:50.818][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:50.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:50.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:50.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:50.825][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:50.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:50.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:50.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:50.831][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:50.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:50.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:50.835][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-15 01:05:50.837][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-15 01:05:50.839][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-15 01:05:50.840][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-15 01:05:50.849][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-15 01:05:50.850][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-15 01:05:50.852][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-15 01:05:50.853][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-15 01:05:50.854][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:50.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:50.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:50.858][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:50.860][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:50.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:50.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:50.864][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:50.865][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:50.867][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:50.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:50.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-15 01:05:50.872][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-15 01:05:50.874][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-15 01:05:50.876][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-15 01:05:50.888][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-15 01:05:50.890][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-15 01:05:50.892][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-15 01:05:50.894][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-15 01:05:50.896][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:50.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:50.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:50.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:50.904][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:50.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:50.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:50.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:50.911][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:50.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:50.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:50.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-15 01:05:50.919][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-15 01:05:50.920][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-15 01:05:50.922][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-15 01:05:50.934][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-15 01:05:50.936][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-15 01:05:50.938][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-15 01:05:50.940][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-15 01:05:50.942][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:50.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:50.947][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:50.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:50.951][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:50.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:50.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:50.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:50.958][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:50.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:50.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:50.964][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-15 01:05:50.966][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-15 01:05:50.968][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-15 01:05:50.970][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-15 01:05:50.981][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-15 01:05:50.983][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-15 01:05:50.985][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-15 01:05:50.987][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-15 01:05:50.990][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:50.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:50.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:50.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:50.998][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:51.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:51.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:51.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:51.007][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:51.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:51.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:51.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-15 01:05:51.015][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-15 01:05:51.017][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-15 01:05:51.019][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-15 01:05:51.030][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-15 01:05:51.032][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-15 01:05:51.034][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-15 01:05:51.036][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-15 01:05:51.039][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:51.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:51.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:51.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:51.047][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:51.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:51.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:51.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:51.055][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:51.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:51.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:51.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-15 01:05:51.062][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-15 01:05:51.064][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-15 01:05:51.066][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-15 01:05:51.081][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-15 01:05:51.083][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-15 01:05:51.085][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-15 01:05:51.086][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-15 01:05:51.089][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:51.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:51.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:51.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:51.096][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:51.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:51.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:51.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:51.103][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:51.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:51.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:51.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-15 01:05:51.121][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-15 01:05:51.123][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-15 01:05:51.124][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-15 01:05:51.133][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-15 01:05:51.135][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-15 01:05:51.136][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-15 01:05:51.138][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-15 01:05:51.140][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:51.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:51.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:51.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:51.148][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:51.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:51.153][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:51.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:51.157][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:51.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:51.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:51.163][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-15 01:05:51.165][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-15 01:05:51.167][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-15 01:05:51.169][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-15 01:05:51.201][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-15 01:05:51.203][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-15 01:05:51.205][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-15 01:05:51.207][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-15 01:05:51.209][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:51.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:51.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:51.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:51.216][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:51.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:51.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:51.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:51.222][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:51.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:51.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:51.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-15 01:05:51.227][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-15 01:05:51.228][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-15 01:05:51.230][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-15 01:05:51.237][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-15 01:05:51.239][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-15 01:05:51.240][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-15 01:05:51.241][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-15 01:05:51.242][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:51.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:51.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:51.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:51.248][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:51.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:51.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:51.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:51.253][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:51.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:51.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:51.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-15 01:05:51.258][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-15 01:05:51.260][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-15 01:05:51.261][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-15 01:05:51.268][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-15 01:05:51.269][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-15 01:05:51.270][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-15 01:05:51.272][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-15 01:05:51.273][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:51.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:51.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:51.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:51.278][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:51.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:51.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:51.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:51.283][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:51.285][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:51.286][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:51.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:51.311][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2025-08-15 01:05:51.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2025-08-15 01:05:51.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:51.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2025-08-15 01:05:51.336][biodb::testThat]
biodb.INFO [2025-08-15 01:05:51.337][biodb::testThat] Running test function  test_annotateMzValues_input_vector  (" annotateMzValues() accepts a single vector. ").
biodb.INFO [2025-08-15 01:05:51.341][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-08-15 01:05:51.342][biodb::testThat]
biodb.TRACE[2025-08-15 01:05:51.347][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-08-15 01:05:51.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-08-15 01:05:51.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:51.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:51.352][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:51.353][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:51.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:51.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:51.357][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:51.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:51.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:51.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:51.362][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:51.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:51.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:51.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:51.368][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:51.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:51.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:51.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-15 01:05:51.376][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-15 01:05:51.378][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-15 01:05:51.379][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-15 01:05:51.387][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-15 01:05:51.388][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-15 01:05:51.390][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-15 01:05:51.392][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-08-15 01:05:51.395][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.72*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-08-15 01:05:51.408][private$cache$loadContents] Load 1 contents, from C:\Users\biocbuild\AppData\Local/R/cache/R/sched.
fscache.DEBUG[2025-08-15 01:05:51.412][FUN] Found encoding ISO-8859-1 for file C:\Users\biocbuild\AppData\Local/R/cache/R/sched/8fc54eee7e982ce554bee8000d8203f7.content.
sched.DEBUG[2025-08-15 01:05:51.413][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-08-15 01:05:51.417][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-15 01:05:51.418][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-15 01:05:51.419][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-15 01:05:51.427][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-15 01:05:51.429][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-15 01:05:51.431][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-15 01:05:51.432][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-15 01:05:51.434][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:51.436][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:51.437][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:51.438][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:51.440][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:51.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:51.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:51.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:51.445][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:51.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:51.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:51.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
sched.DEBUG[2025-08-15 01:05:51.452][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.73*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-08-15 01:05:51.455][private$cache$loadContents] Load 1 contents, from C:\Users\biocbuild\AppData\Local/R/cache/R/sched.
fscache.DEBUG[2025-08-15 01:05:51.457][FUN] Found encoding ISO-8859-1 for file C:\Users\biocbuild\AppData\Local/R/cache/R/sched/6def615835d7c1dfccd5a5f135bd2f9d.content.
sched.DEBUG[2025-08-15 01:05:51.459][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-08-15 01:05:51.462][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-15 01:05:51.463][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-15 01:05:51.464][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-15 01:05:51.473][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-15 01:05:51.474][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-15 01:05:51.475][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-15 01:05:51.476][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-15 01:05:51.478][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:51.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:51.480][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:51.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:51.483][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:51.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:51.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:51.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:51.488][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:51.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:51.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:51.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-15 01:05:51.494][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-15 01:05:51.495][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-15 01:05:51.496][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-15 01:05:51.504][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-15 01:05:51.506][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-15 01:05:51.507][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-15 01:05:51.508][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-15 01:05:51.509][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:51.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:51.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:51.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:51.515][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:51.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:51.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:51.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:51.520][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:51.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:51.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:51.524][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-15 01:05:51.526][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-08-15 01:05:51.528][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-15 01:05:51.529][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-15 01:05:51.530][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-15 01:05:51.538][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-15 01:05:51.539][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-15 01:05:51.541][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-15 01:05:51.542][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-15 01:05:51.544][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-15 01:05:51.545][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-15 01:05:51.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:51.548][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:51.549][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-15 01:05:51.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-15 01:05:51.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:51.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:51.555][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-15 01:05:51.556][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-15 01:05:51.557][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-15 01:05:51.559][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-15 01:05:51.560][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-15 01:05:51.561][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-15 01:05:51.562][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-15 01:05:51.564][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:51.565][ef$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:51.566][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-15 01:05:51.567][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-15 01:05:51.569][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:51.570][ef$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:51.571][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-15 01:05:51.573][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-15 01:05:51.574][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-15 01:05:51.575][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-15 01:05:51.576][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:51.578][ef$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:51.579][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-15 01:05:51.580][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-15 01:05:51.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-15 01:05:51.584][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:51.585][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:51.587][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-15 01:05:51.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-15 01:05:51.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:51.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:51.592][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-15 01:05:51.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-15 01:05:51.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:51.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:51.606][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [192288].
biodb.DEBUG[2025-08-15 01:05:51.608][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-15 01:05:51.609][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-15 01:05:51.611][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-15 01:05:51.620][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-15 01:05:51.622][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-15 01:05:51.624][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-15 01:05:51.626][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-15 01:05:51.629][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-15 01:05:51.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-15 01:05:51.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:51.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:51.643][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-15 01:05:51.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-15 01:05:51.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:51.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:51.649][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-15 01:05:51.651][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-15 01:05:51.653][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-15 01:05:51.655][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-15 01:05:51.657][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-15 01:05:51.659][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-15 01:05:51.661][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-15 01:05:51.663][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:51.665][ef$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:51.668][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-15 01:05:51.670][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-15 01:05:51.672][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:51.674][ef$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:51.676][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-15 01:05:51.678][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-15 01:05:51.680][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-15 01:05:51.682][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-15 01:05:51.684][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:51.686][ef$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:51.688][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-15 01:05:51.690][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-15 01:05:51.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-15 01:05:51.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:51.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:51.698][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-15 01:05:51.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-15 01:05:51.702][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:51.703][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:51.706][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-15 01:05:51.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-15 01:05:51.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:51.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:51.714][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2025-08-15 01:05:51.716][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-15 01:05:51.718][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-15 01:05:51.720][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-15 01:05:51.735][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-15 01:05:51.737][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-15 01:05:51.738][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-15 01:05:51.739][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-15 01:05:51.741][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-15 01:05:51.742][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-15 01:05:51.744][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:51.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:51.747][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-15 01:05:51.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-15 01:05:51.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:51.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:51.753][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-15 01:05:51.755][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-15 01:05:51.757][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-15 01:05:51.758][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-15 01:05:51.760][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-15 01:05:51.761][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-15 01:05:51.763][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-15 01:05:51.764][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:51.765][ef$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:51.766][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-15 01:05:51.768][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-15 01:05:51.769][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:51.770][ef$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:51.771][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-15 01:05:51.772][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-15 01:05:51.774][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-15 01:05:51.775][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-15 01:05:51.776][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:51.778][ef$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:51.779][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-15 01:05:51.781][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-15 01:05:51.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-15 01:05:51.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:51.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:51.786][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-15 01:05:51.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-15 01:05:51.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:51.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:51.791][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-15 01:05:51.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-15 01:05:51.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:51.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:51.798][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [209892].
biodb.DEBUG[2025-08-15 01:05:51.799][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-08-15 01:05:51.801][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2025-08-15 01:05:51.816][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:51.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:51.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:51.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:51.823][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:51.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:51.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:51.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:51.828][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:51.829][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:51.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:51.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:51.833][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:51.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:51.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:51.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-15 01:05:51.931][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-15 01:05:51.933][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-15 01:05:51.935][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-15 01:05:51.947][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-15 01:05:51.949][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-15 01:05:51.950][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-15 01:05:51.951][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-08-15 01:05:51.954][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-08-15 01:05:51.958][private$cache$loadContents] Load 1 contents, from C:\Users\biocbuild\AppData\Local/R/cache/R/sched.
fscache.DEBUG[2025-08-15 01:05:51.963][FUN] Found encoding ISO-8859-1 for file C:\Users\biocbuild\AppData\Local/R/cache/R/sched/2e865a03592d6effdf242ff63104f35a.content.
sched.DEBUG[2025-08-15 01:05:51.966][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
sched.DEBUG[2025-08-15 01:05:51.971][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-08-15 01:05:51.976][private$cache$loadContents] Load 1 contents, from C:\Users\biocbuild\AppData\Local/R/cache/R/sched.
fscache.DEBUG[2025-08-15 01:05:51.982][FUN] Found encoding ISO-8859-1 for file C:\Users\biocbuild\AppData\Local/R/cache/R/sched/f0c73645ca32490f91d503a462d812b2.content.
sched.DEBUG[2025-08-15 01:05:51.983][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-08-15 01:05:51.986][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-15 01:05:51.988][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-15 01:05:51.989][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-15 01:05:51.996][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-15 01:05:51.997][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-15 01:05:51.999][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-15 01:05:52.000][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-15 01:05:52.002][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:52.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:52.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:52.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:52.007][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:52.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:52.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:52.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:52.012][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:52.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:52.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:52.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-15 01:05:52.017][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-15 01:05:52.018][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-15 01:05:52.020][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-15 01:05:52.028][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-15 01:05:52.029][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-15 01:05:52.031][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-15 01:05:52.033][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-15 01:05:52.035][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:52.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:52.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:52.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:52.042][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:52.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:52.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:52.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:52.050][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:52.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:52.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:52.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-15 01:05:52.057][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-15 01:05:52.058][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-15 01:05:52.060][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-15 01:05:52.081][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-15 01:05:52.083][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-15 01:05:52.085][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-15 01:05:52.087][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-15 01:05:52.090][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:52.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:52.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:52.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:52.099][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:52.101][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:52.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:52.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:52.107][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:52.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:52.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:52.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-15 01:05:52.139][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-08-15 01:05:52.178][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-15 01:05:52.180][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-15 01:05:52.181][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-15 01:05:52.191][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-15 01:05:52.193][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-15 01:05:52.195][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-15 01:05:52.197][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-15 01:05:52.200][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-15 01:05:52.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-15 01:05:52.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:52.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:52.209][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-15 01:05:52.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-15 01:05:52.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:52.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:52.217][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-15 01:05:52.219][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-15 01:05:52.221][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-15 01:05:52.223][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-15 01:05:52.225][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-15 01:05:52.227][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-15 01:05:52.229][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-15 01:05:52.231][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:52.233][ef$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:52.235][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-15 01:05:52.237][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-15 01:05:52.239][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:52.241][ef$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:52.243][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-15 01:05:52.245][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-15 01:05:52.247][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-15 01:05:52.249][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-15 01:05:52.251][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:52.253][ef$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:52.254][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-15 01:05:52.256][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-15 01:05:52.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-15 01:05:52.260][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:52.262][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:52.265][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-15 01:05:52.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-15 01:05:52.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:52.271][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:52.273][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-15 01:05:52.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-15 01:05:52.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:52.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:52.281][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4648].
biodb.DEBUG[2025-08-15 01:05:52.283][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-15 01:05:52.285][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-15 01:05:52.287][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-15 01:05:52.300][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-15 01:05:52.302][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-15 01:05:52.305][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-15 01:05:52.307][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-15 01:05:52.329][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-15 01:05:52.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-15 01:05:52.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:52.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:52.338][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-15 01:05:52.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-15 01:05:52.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:52.345][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:52.378][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-15 01:05:52.380][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-15 01:05:52.383][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-15 01:05:52.385][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-15 01:05:52.387][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-15 01:05:52.390][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-15 01:05:52.392][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-15 01:05:52.394][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:52.396][ef$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:52.398][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-15 01:05:52.400][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-15 01:05:52.402][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:52.404][ef$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:52.406][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-15 01:05:52.426][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-15 01:05:52.428][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-15 01:05:52.429][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-15 01:05:52.431][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:52.432][ef$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:52.433][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-15 01:05:52.435][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-15 01:05:52.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-15 01:05:52.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:52.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:52.441][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-15 01:05:52.442][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-15 01:05:52.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:52.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:52.446][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-15 01:05:52.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-15 01:05:52.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:52.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:52.452][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2025-08-15 01:05:52.453][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-15 01:05:52.455][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-15 01:05:52.456][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-15 01:05:52.463][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-15 01:05:52.465][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-15 01:05:52.466][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-15 01:05:52.468][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-15 01:05:52.469][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-15 01:05:52.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-15 01:05:52.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:52.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:52.475][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-15 01:05:52.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-15 01:05:52.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:52.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:52.481][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-15 01:05:52.482][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-15 01:05:52.484][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-15 01:05:52.485][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-15 01:05:52.487][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-15 01:05:52.488][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-15 01:05:52.490][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-15 01:05:52.491][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:52.492][ef$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:52.493][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-15 01:05:52.495][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-15 01:05:52.497][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:52.498][ef$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:52.499][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-15 01:05:52.501][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-15 01:05:52.502][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-15 01:05:52.503][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-15 01:05:52.505][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:52.506][ef$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:52.507][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-15 01:05:52.509][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-15 01:05:52.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-15 01:05:52.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:52.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:52.515][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-15 01:05:52.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-15 01:05:52.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:52.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:52.520][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-15 01:05:52.521][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-15 01:05:52.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:52.524][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:52.526][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [62447].
biodb.DEBUG[2025-08-15 01:05:52.527][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-08-15 01:05:52.528][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2025-08-15 01:05:52.540][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2025-08-15 01:05:52.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2025-08-15 01:05:52.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:52.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2025-08-15 01:05:52.551][biodb::testThat]
biodb.INFO [2025-08-15 01:05:52.552][biodb::testThat] Running test function  test_annotateMzValues_ppm_tol  (" ppm tolerance works in annotateMzValues() ").
biodb.INFO [2025-08-15 01:05:52.553][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-08-15 01:05:52.554][biodb::testThat]
biodb.TRACE[2025-08-15 01:05:52.559][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-08-15 01:05:52.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-08-15 01:05:52.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:52.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:52.565][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:52.568][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:52.569][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:52.570][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:52.571][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:52.573][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:52.575][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:52.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:52.578][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:52.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:52.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:52.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:52.584][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:52.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:52.587][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:52.588][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-15 01:05:52.593][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-15 01:05:52.595][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-15 01:05:52.597][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-15 01:05:52.608][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-15 01:05:52.610][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-15 01:05:52.612][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-15 01:05:52.614][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-08-15 01:05:52.619][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.72*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-08-15 01:05:52.623][private$cache$loadContents] Load 1 contents, from C:\Users\biocbuild\AppData\Local/R/cache/R/sched.
fscache.DEBUG[2025-08-15 01:05:52.626][FUN] Found encoding ISO-8859-1 for file C:\Users\biocbuild\AppData\Local/R/cache/R/sched/8fc54eee7e982ce554bee8000d8203f7.content.
sched.DEBUG[2025-08-15 01:05:52.627][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-08-15 01:05:52.631][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-15 01:05:52.632][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-15 01:05:52.634][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-15 01:05:52.646][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-15 01:05:52.648][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-15 01:05:52.651][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-15 01:05:52.653][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-15 01:05:52.655][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:52.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:52.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:52.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:52.673][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:52.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:52.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:52.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:52.684][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:52.686][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:52.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:52.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
sched.DEBUG[2025-08-15 01:05:52.694][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.73*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-08-15 01:05:52.698][private$cache$loadContents] Load 1 contents, from C:\Users\biocbuild\AppData\Local/R/cache/R/sched.
fscache.DEBUG[2025-08-15 01:05:52.702][FUN] Found encoding ISO-8859-1 for file C:\Users\biocbuild\AppData\Local/R/cache/R/sched/6def615835d7c1dfccd5a5f135bd2f9d.content.
sched.DEBUG[2025-08-15 01:05:52.704][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-08-15 01:05:52.708][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-15 01:05:52.710][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-15 01:05:52.712][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-15 01:05:52.723][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-15 01:05:52.725][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-15 01:05:52.727][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-15 01:05:52.729][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-15 01:05:52.732][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:52.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:52.736][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:52.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:52.740][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:52.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:52.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:52.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:52.749][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:52.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:52.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:52.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-15 01:05:52.756][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-15 01:05:52.757][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-15 01:05:52.758][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-15 01:05:52.797][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-15 01:05:52.798][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-15 01:05:52.800][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-15 01:05:52.801][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-15 01:05:52.803][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:52.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:52.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:52.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:52.808][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:52.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:52.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:52.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:52.815][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:52.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:52.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:52.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-15 01:05:52.820][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-08-15 01:05:52.822][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-15 01:05:52.823][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-15 01:05:52.824][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-15 01:05:52.831][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-15 01:05:52.832][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-15 01:05:52.834][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-15 01:05:52.835][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-15 01:05:52.836][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-15 01:05:52.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-15 01:05:52.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:52.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:52.841][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-15 01:05:52.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-15 01:05:52.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:52.845][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:52.847][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-15 01:05:52.848][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-15 01:05:52.849][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-15 01:05:52.850][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-15 01:05:52.851][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-15 01:05:52.853][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-15 01:05:52.854][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-15 01:05:52.855][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:52.856][ef$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:52.858][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-15 01:05:52.859][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-15 01:05:52.860][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:52.861][ef$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:52.863][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-15 01:05:52.864][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-15 01:05:52.865][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-15 01:05:52.866][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-15 01:05:52.868][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:52.869][ef$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:52.870][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-15 01:05:52.872][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-15 01:05:52.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-15 01:05:52.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:52.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:52.880][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-15 01:05:52.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-15 01:05:52.884][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:52.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:52.888][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-15 01:05:52.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-15 01:05:52.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:52.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:52.893][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [192288].
biodb.DEBUG[2025-08-15 01:05:52.894][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-15 01:05:52.895][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-15 01:05:52.897][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-15 01:05:52.904][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-15 01:05:52.905][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-15 01:05:52.906][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-15 01:05:52.907][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-15 01:05:52.909][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-15 01:05:52.910][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-15 01:05:52.911][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:52.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:52.914][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-15 01:05:52.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-15 01:05:52.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:52.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:52.919][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-15 01:05:52.921][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-15 01:05:52.923][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-15 01:05:52.924][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-15 01:05:52.926][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-15 01:05:52.928][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-15 01:05:52.930][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-15 01:05:52.932][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:52.934][ef$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:52.936][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-15 01:05:52.938][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-15 01:05:52.940][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:52.942][ef$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:52.944][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-15 01:05:52.946][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-15 01:05:52.948][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-15 01:05:52.950][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-15 01:05:52.952][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:52.954][ef$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:52.956][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-15 01:05:52.958][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-15 01:05:52.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-15 01:05:52.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:52.964][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:52.975][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-15 01:05:52.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-15 01:05:52.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:52.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:52.985][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-15 01:05:52.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-15 01:05:52.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:52.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:52.994][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2025-08-15 01:05:52.996][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-15 01:05:52.997][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-15 01:05:52.999][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-15 01:05:53.099][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-15 01:05:53.101][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-15 01:05:53.103][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-15 01:05:53.105][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-15 01:05:53.108][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-15 01:05:53.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-15 01:05:53.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:53.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:53.116][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-15 01:05:53.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-15 01:05:53.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:53.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:53.124][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-15 01:05:53.126][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-15 01:05:53.127][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-15 01:05:53.129][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-15 01:05:53.131][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-15 01:05:53.133][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-15 01:05:53.135][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-15 01:05:53.137][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:53.139][ef$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:53.140][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-15 01:05:53.142][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-15 01:05:53.144][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:53.146][ef$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:53.148][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-15 01:05:53.150][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-15 01:05:53.152][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-15 01:05:53.154][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-15 01:05:53.156][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:53.158][ef$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:53.160][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-15 01:05:53.162][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-15 01:05:53.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-15 01:05:53.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:53.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:53.170][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-15 01:05:53.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-15 01:05:53.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:53.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:53.178][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-15 01:05:53.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-15 01:05:53.182][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:53.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:53.187][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [209892].
biodb.DEBUG[2025-08-15 01:05:53.189][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-08-15 01:05:53.190][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2025-08-15 01:05:53.209][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:53.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:53.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:53.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:53.217][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:53.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:53.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:53.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:53.223][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:53.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:53.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:53.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:53.231][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:53.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:53.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:53.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-15 01:05:53.242][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-15 01:05:53.244][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-15 01:05:53.245][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-15 01:05:53.253][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-15 01:05:53.255][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-15 01:05:53.256][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-15 01:05:53.257][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-08-15 01:05:53.261][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-08-15 01:05:53.264][private$cache$loadContents] Load 1 contents, from C:\Users\biocbuild\AppData\Local/R/cache/R/sched.
fscache.DEBUG[2025-08-15 01:05:53.267][FUN] Found encoding ISO-8859-1 for file C:\Users\biocbuild\AppData\Local/R/cache/R/sched/2e865a03592d6effdf242ff63104f35a.content.
sched.DEBUG[2025-08-15 01:05:53.268][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
sched.DEBUG[2025-08-15 01:05:53.272][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-08-15 01:05:53.277][private$cache$loadContents] Load 1 contents, from C:\Users\biocbuild\AppData\Local/R/cache/R/sched.
fscache.DEBUG[2025-08-15 01:05:53.281][FUN] Found encoding ISO-8859-1 for file C:\Users\biocbuild\AppData\Local/R/cache/R/sched/f0c73645ca32490f91d503a462d812b2.content.
sched.DEBUG[2025-08-15 01:05:53.283][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-08-15 01:05:53.288][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-15 01:05:53.290][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-15 01:05:53.292][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-15 01:05:53.304][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-15 01:05:53.306][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-15 01:05:53.308][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-15 01:05:53.310][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-15 01:05:53.312][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:53.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:53.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:53.319][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:53.321][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:53.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:53.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:53.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:53.329][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:53.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:53.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:53.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-15 01:05:53.338][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-15 01:05:53.340][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-15 01:05:53.342][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-15 01:05:53.353][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-15 01:05:53.355][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-15 01:05:53.356][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-15 01:05:53.358][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-15 01:05:53.360][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:53.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:53.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:53.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:53.365][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:53.367][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:53.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:53.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:53.371][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:53.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:53.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:53.383][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-15 01:05:53.384][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-15 01:05:53.386][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-15 01:05:53.388][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-15 01:05:53.399][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-15 01:05:53.401][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-15 01:05:53.404][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-15 01:05:53.406][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-15 01:05:53.408][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:53.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:53.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:53.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:53.417][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:53.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:53.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:53.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:53.425][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:53.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:53.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:53.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-15 01:05:53.434][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-08-15 01:05:53.437][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-15 01:05:53.439][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-15 01:05:53.441][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-15 01:05:53.456][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-15 01:05:53.458][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-15 01:05:53.460][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-15 01:05:53.462][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-15 01:05:53.465][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-15 01:05:53.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-15 01:05:53.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:53.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:53.474][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-15 01:05:53.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-15 01:05:53.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:53.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:53.482][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-15 01:05:53.484][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-15 01:05:53.486][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-15 01:05:53.488][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-15 01:05:53.490][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-15 01:05:53.492][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-15 01:05:53.495][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-15 01:05:53.497][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:53.499][ef$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:53.501][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-15 01:05:53.503][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-15 01:05:53.505][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:53.507][ef$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:53.509][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-15 01:05:53.511][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-15 01:05:53.513][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-15 01:05:53.516][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-15 01:05:53.518][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:53.520][ef$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:53.522][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-15 01:05:53.524][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-15 01:05:53.526][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-15 01:05:53.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:53.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:53.532][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-15 01:05:53.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-15 01:05:53.536][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:53.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:53.540][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-15 01:05:53.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-15 01:05:53.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:53.546][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:53.549][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4648].
biodb.DEBUG[2025-08-15 01:05:53.551][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-15 01:05:53.553][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-15 01:05:53.555][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-15 01:05:53.565][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-15 01:05:53.566][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-15 01:05:53.568][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-15 01:05:53.569][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-15 01:05:53.570][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-15 01:05:53.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-15 01:05:53.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:53.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:53.576][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-15 01:05:53.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-15 01:05:53.579][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:53.581][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:53.582][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-15 01:05:53.585][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-15 01:05:53.586][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-15 01:05:53.587][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-15 01:05:53.589][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-15 01:05:53.590][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-15 01:05:53.592][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-15 01:05:53.593][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:53.595][ef$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:53.597][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-15 01:05:53.598][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-15 01:05:53.600][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:53.601][ef$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:53.603][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-15 01:05:53.605][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-15 01:05:53.606][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-15 01:05:53.608][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-15 01:05:53.610][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:53.611][ef$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:53.613][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-15 01:05:53.614][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-15 01:05:53.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-15 01:05:53.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:53.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:53.621][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-15 01:05:53.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-15 01:05:53.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:53.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:53.628][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-15 01:05:53.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-15 01:05:53.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:53.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:53.634][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2025-08-15 01:05:53.636][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-15 01:05:53.637][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-15 01:05:53.638][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-15 01:05:53.647][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-15 01:05:53.649][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-15 01:05:53.651][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-15 01:05:53.653][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-15 01:05:53.655][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-15 01:05:53.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-15 01:05:53.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:53.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:53.662][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-15 01:05:53.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-15 01:05:53.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:53.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:53.669][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-15 01:05:53.670][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-15 01:05:53.672][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-15 01:05:53.674][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-15 01:05:53.675][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-15 01:05:53.677][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-15 01:05:53.678][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-15 01:05:53.687][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:53.689][ef$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:53.691][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-15 01:05:53.693][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-15 01:05:53.694][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:53.696][ef$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:53.697][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-15 01:05:53.698][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-15 01:05:53.700][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-15 01:05:53.701][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-15 01:05:53.703][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:53.704][ef$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:53.706][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-15 01:05:53.707][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-15 01:05:53.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-15 01:05:53.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:53.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:53.713][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-15 01:05:53.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-15 01:05:53.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:53.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:53.719][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-15 01:05:53.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-15 01:05:53.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:53.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:53.725][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [62447].
biodb.DEBUG[2025-08-15 01:05:53.726][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-08-15 01:05:53.728][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2025-08-15 01:05:53.739][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2025-08-15 01:05:53.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2025-08-15 01:05:53.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:53.744][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2025-08-15 01:05:53.752][biodb::testThat]
biodb.INFO [2025-08-15 01:05:53.753][biodb::testThat] Running test function  test_annotateMzValues_input_dataframe_untouched  (" Input data frame is not modified by annotateMzValues() ").
biodb.INFO [2025-08-15 01:05:53.755][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-08-15 01:05:53.756][biodb::testThat]
biodb.TRACE[2025-08-15 01:05:53.760][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-08-15 01:05:53.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-08-15 01:05:53.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:53.764][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:53.766][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:53.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:53.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:53.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:53.774][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:53.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:53.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:53.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:53.782][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:53.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:53.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:53.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:53.790][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:53.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:53.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:53.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-15 01:05:53.805][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-15 01:05:53.807][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-15 01:05:53.809][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-15 01:05:53.820][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-15 01:05:53.822][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-15 01:05:53.824][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-15 01:05:53.826][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-08-15 01:05:53.831][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.72*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-08-15 01:05:53.836][private$cache$loadContents] Load 1 contents, from C:\Users\biocbuild\AppData\Local/R/cache/R/sched.
fscache.DEBUG[2025-08-15 01:05:53.840][FUN] Found encoding ISO-8859-1 for file C:\Users\biocbuild\AppData\Local/R/cache/R/sched/8fc54eee7e982ce554bee8000d8203f7.content.
sched.DEBUG[2025-08-15 01:05:53.842][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-08-15 01:05:53.846][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-15 01:05:53.848][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-15 01:05:53.850][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-15 01:05:53.861][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-15 01:05:53.864][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-15 01:05:53.866][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-15 01:05:53.868][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-15 01:05:53.871][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:53.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:53.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:53.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:53.880][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:53.883][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:53.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:53.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:53.890][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:53.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:53.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:53.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
sched.DEBUG[2025-08-15 01:05:53.901][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.73*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-08-15 01:05:53.907][private$cache$loadContents] Load 1 contents, from C:\Users\biocbuild\AppData\Local/R/cache/R/sched.
fscache.DEBUG[2025-08-15 01:05:53.911][FUN] Found encoding ISO-8859-1 for file C:\Users\biocbuild\AppData\Local/R/cache/R/sched/6def615835d7c1dfccd5a5f135bd2f9d.content.
sched.DEBUG[2025-08-15 01:05:53.914][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-08-15 01:05:53.919][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-15 01:05:53.921][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-15 01:05:53.922][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-15 01:05:53.931][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-15 01:05:53.933][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-15 01:05:53.935][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-15 01:05:53.937][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-15 01:05:53.939][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:53.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:53.944][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:53.946][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:53.948][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:53.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:53.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:53.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:53.956][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:53.958][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:53.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:53.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-15 01:05:53.965][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-15 01:05:53.966][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-15 01:05:53.968][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-15 01:05:53.991][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-15 01:05:53.993][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-15 01:05:53.996][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-15 01:05:53.998][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-15 01:05:54.000][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:54.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:54.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:54.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:54.019][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:54.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:54.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:54.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:54.029][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:54.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:54.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:54.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-15 01:05:54.038][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-08-15 01:05:54.041][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-15 01:05:54.043][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-15 01:05:54.045][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-15 01:05:54.056][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-15 01:05:54.058][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-15 01:05:54.060][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-15 01:05:54.062][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-15 01:05:54.065][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-15 01:05:54.067][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-15 01:05:54.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:54.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:54.073][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-15 01:05:54.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-15 01:05:54.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:54.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:54.082][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-15 01:05:54.084][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-15 01:05:54.086][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-15 01:05:54.088][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-15 01:05:54.089][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-15 01:05:54.091][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-15 01:05:54.094][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-15 01:05:54.095][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:54.097][ef$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:54.099][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-15 01:05:54.101][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-15 01:05:54.103][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:54.105][ef$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:54.107][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-15 01:05:54.109][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-15 01:05:54.111][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-15 01:05:54.113][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-15 01:05:54.115][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:54.116][ef$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:54.118][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-15 01:05:54.120][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-15 01:05:54.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-15 01:05:54.124][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:54.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:54.128][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-15 01:05:54.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-15 01:05:54.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:54.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:54.136][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-15 01:05:54.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-15 01:05:54.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:54.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:54.145][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [192288].
biodb.DEBUG[2025-08-15 01:05:54.147][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-15 01:05:54.149][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-15 01:05:54.151][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-15 01:05:55.028][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-15 01:05:55.030][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-15 01:05:55.032][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-15 01:05:55.034][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-15 01:05:55.037][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-15 01:05:55.039][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-15 01:05:55.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:55.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:55.045][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-15 01:05:55.048][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-15 01:05:55.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:55.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:55.054][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-15 01:05:55.055][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-15 01:05:55.057][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-15 01:05:55.059][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-15 01:05:55.061][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-15 01:05:55.063][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-15 01:05:55.065][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-15 01:05:55.067][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:55.069][ef$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:55.071][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-15 01:05:55.073][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-15 01:05:55.075][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:55.077][ef$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:55.078][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-15 01:05:55.080][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-15 01:05:55.082][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-15 01:05:55.084][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-15 01:05:55.086][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:55.088][ef$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:55.090][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-15 01:05:55.092][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-15 01:05:55.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-15 01:05:55.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:55.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:55.099][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-15 01:05:55.101][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-15 01:05:55.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:55.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:55.107][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-15 01:05:55.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-15 01:05:55.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:55.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:55.115][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2025-08-15 01:05:55.117][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-15 01:05:55.119][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-15 01:05:55.121][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-15 01:05:55.132][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-15 01:05:55.134][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-15 01:05:55.135][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-15 01:05:55.137][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-15 01:05:55.139][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-15 01:05:55.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-15 01:05:55.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:55.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:55.145][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-15 01:05:55.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-15 01:05:55.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:55.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:55.153][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-15 01:05:55.155][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-15 01:05:55.157][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-15 01:05:55.159][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-15 01:05:55.160][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-15 01:05:55.162][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-15 01:05:55.163][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-15 01:05:55.164][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:55.165][ef$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:55.167][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-15 01:05:55.168][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-15 01:05:55.169][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:55.171][ef$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:55.172][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-15 01:05:55.173][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-15 01:05:55.175][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-15 01:05:55.176][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-15 01:05:55.177][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:55.179][ef$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:55.180][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-15 01:05:55.181][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-15 01:05:55.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-15 01:05:55.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:55.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:55.194][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-15 01:05:55.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-15 01:05:55.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:55.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:55.200][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-15 01:05:55.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-15 01:05:55.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:55.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:55.207][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [209892].
biodb.DEBUG[2025-08-15 01:05:55.208][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-08-15 01:05:55.209][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2025-08-15 01:05:55.263][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:55.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:55.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:55.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:55.271][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:55.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:55.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:55.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:55.279][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:55.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:55.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:55.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:55.288][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:55.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:55.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:55.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-15 01:05:55.303][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-15 01:05:55.305][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-15 01:05:55.307][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-15 01:05:55.318][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-15 01:05:55.320][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-15 01:05:55.321][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-15 01:05:55.323][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-08-15 01:05:55.327][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-08-15 01:05:55.332][private$cache$loadContents] Load 1 contents, from C:\Users\biocbuild\AppData\Local/R/cache/R/sched.
fscache.DEBUG[2025-08-15 01:05:55.335][FUN] Found encoding ISO-8859-1 for file C:\Users\biocbuild\AppData\Local/R/cache/R/sched/2e865a03592d6effdf242ff63104f35a.content.
sched.DEBUG[2025-08-15 01:05:55.338][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
sched.DEBUG[2025-08-15 01:05:55.343][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-08-15 01:05:55.348][private$cache$loadContents] Load 1 contents, from C:\Users\biocbuild\AppData\Local/R/cache/R/sched.
fscache.DEBUG[2025-08-15 01:05:55.352][FUN] Found encoding ISO-8859-1 for file C:\Users\biocbuild\AppData\Local/R/cache/R/sched/f0c73645ca32490f91d503a462d812b2.content.
sched.DEBUG[2025-08-15 01:05:55.355][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-08-15 01:05:55.359][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-15 01:05:55.361][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-15 01:05:55.363][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-15 01:05:55.382][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-15 01:05:55.384][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-15 01:05:55.386][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-15 01:05:55.388][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-15 01:05:55.391][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:55.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:55.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:55.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:55.399][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:55.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:55.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:55.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:55.407][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:55.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:55.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:55.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-15 01:05:55.415][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-15 01:05:55.417][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-15 01:05:55.419][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-15 01:05:55.430][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-15 01:05:55.432][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-15 01:05:55.434][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-15 01:05:55.435][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-15 01:05:55.438][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:55.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:55.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:55.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:55.444][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:55.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:55.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:55.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:55.451][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:55.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:55.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:55.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-15 01:05:55.458][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-15 01:05:55.460][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-15 01:05:55.461][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-15 01:05:55.471][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-15 01:05:55.473][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-15 01:05:55.475][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-15 01:05:55.476][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-15 01:05:55.478][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:55.480][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:55.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:55.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:55.484][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:55.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:55.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:55.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:55.490][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:55.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:55.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:55.494][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-15 01:05:55.496][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-08-15 01:05:55.498][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-15 01:05:55.499][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-15 01:05:55.501][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-15 01:05:55.511][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-15 01:05:55.514][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-15 01:05:55.516][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-15 01:05:55.518][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-15 01:05:55.529][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-15 01:05:55.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-15 01:05:55.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:55.535][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:55.537][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-15 01:05:55.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-15 01:05:55.541][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:55.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:55.544][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-15 01:05:55.545][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-15 01:05:55.547][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-15 01:05:55.548][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-15 01:05:55.550][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-15 01:05:55.551][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-15 01:05:55.553][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-15 01:05:55.554][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:55.556][ef$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:55.558][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-15 01:05:55.560][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-15 01:05:55.562][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:55.564][ef$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:55.566][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-15 01:05:55.567][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-15 01:05:55.569][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-15 01:05:55.570][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-15 01:05:55.572][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:55.574][ef$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:55.576][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-15 01:05:55.578][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-15 01:05:55.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-15 01:05:55.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:55.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:55.586][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-15 01:05:55.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-15 01:05:55.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:55.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:55.594][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-15 01:05:55.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-15 01:05:55.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:55.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:55.603][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4648].
biodb.DEBUG[2025-08-15 01:05:55.605][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-15 01:05:55.607][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-15 01:05:55.609][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-15 01:05:55.619][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-15 01:05:55.621][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-15 01:05:55.622][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-15 01:05:55.623][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-15 01:05:55.625][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-15 01:05:55.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-15 01:05:55.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:55.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:55.633][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-15 01:05:55.635][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-15 01:05:55.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:55.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:55.640][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-15 01:05:55.642][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-15 01:05:55.644][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-15 01:05:55.646][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-15 01:05:55.648][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-15 01:05:55.650][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-15 01:05:55.652][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-15 01:05:55.654][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:55.656][ef$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:55.659][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-15 01:05:55.663][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-15 01:05:55.665][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:55.667][ef$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:55.669][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-15 01:05:55.671][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-15 01:05:55.673][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-15 01:05:55.676][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-15 01:05:55.678][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:55.680][ef$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:55.682][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-15 01:05:55.684][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-15 01:05:55.686][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-15 01:05:55.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:55.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:55.692][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-15 01:05:55.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-15 01:05:55.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:55.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:55.700][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-15 01:05:55.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-15 01:05:55.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:55.706][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:55.709][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2025-08-15 01:05:55.711][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-15 01:05:55.713][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-15 01:05:55.715][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-15 01:05:55.727][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-15 01:05:55.729][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-15 01:05:55.731][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-15 01:05:55.732][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-15 01:05:55.734][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-15 01:05:55.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-15 01:05:55.739][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:55.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:55.743][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-15 01:05:55.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-15 01:05:55.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:55.749][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:55.751][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-15 01:05:55.753][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-08-15 01:05:55.755][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-08-15 01:05:55.757][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-08-15 01:05:55.759][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-15 01:05:55.761][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-15 01:05:55.763][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-15 01:05:55.765][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:55.767][ef$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:55.769][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-15 01:05:55.771][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-15 01:05:55.773][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:55.775][ef$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:55.777][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-15 01:05:55.779][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-08-15 01:05:55.781][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-15 01:05:55.783][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-15 01:05:55.785][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:55.787][ef$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:55.789][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-08-15 01:05:55.791][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-15 01:05:55.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-15 01:05:55.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:55.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:55.799][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-15 01:05:55.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-15 01:05:55.804][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:55.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:55.808][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-15 01:05:55.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-15 01:05:55.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:55.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:55.817][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [62447].
biodb.DEBUG[2025-08-15 01:05:55.819][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-08-15 01:05:55.821][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2025-08-15 01:05:55.864][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2025-08-15 01:05:55.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2025-08-15 01:05:55.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:55.869][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2025-08-15 01:05:55.879][biodb::testThat]
biodb.INFO [2025-08-15 01:05:55.881][biodb::testThat] Running test function  test.wrong.entry  (" Wrong entry gives NULL ").
biodb.INFO [2025-08-15 01:05:55.883][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-08-15 01:05:55.885][biodb::testThat]
biodb.DEBUG[2025-08-15 01:05:55.889][private$loadEntries] Creating entries from ids [1]: "WRONGA".
biodb.DEBUG[2025-08-15 01:05:55.891][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-08-15 01:05:55.894][cch$loadContents] Load 1 contents, from C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-08-15 01:05:55.917][FUN] Found encoding ISO-8859-1 for file C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/WRONGA.xml.
biodb.DEBUG[2025-08-15 01:05:55.919][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-15 01:05:55.921][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-15 01:05:55.922][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-15 01:05:55.925][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-15 01:05:55.926][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-15 01:05:55.928][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-15 01:05:55.939][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-15 01:05:55.941][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-15 01:05:55.943][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-15 01:05:55.945][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-15 01:05:55.949][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-15 01:05:55.952][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-15 01:05:55.954][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:55.956][ef$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:55.957][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-15 01:05:55.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-15 01:05:55.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:55.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:55.964][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-15 01:05:55.965][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-15 01:05:55.967][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:55.968][ef$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:55.969][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-15 01:05:55.971][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-15 01:05:55.972][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:55.973][ef$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:55.975][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-15 01:05:55.976][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-15 01:05:55.977][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:55.979][ef$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:55.980][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-15 01:05:55.982][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-15 01:05:55.983][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:55.984][ef$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:55.986][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-15 01:05:55.987][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-15 01:05:55.988][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:55.990][ef$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:55.991][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-15 01:05:55.993][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:55.994][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:55.995][ef$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:55.997][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:55.998][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:55.999][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:56.001][ef$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:56.002][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-15 01:05:56.004][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-15 01:05:56.005][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:56.006][ef$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:56.008][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-15 01:05:56.009][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-15 01:05:56.010][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:56.012][ef$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:56.014][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-15 01:05:56.016][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-15 01:05:56.017][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:56.019][ef$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:56.021][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-15 01:05:56.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-15 01:05:56.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:56.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:56.028][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-15 01:05:56.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-15 01:05:56.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:56.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:56.033][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-15 01:05:56.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-15 01:05:56.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:56.037][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:56.039][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-15 01:05:56.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-15 01:05:56.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:56.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:56.044][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-15 01:05:56.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-15 01:05:56.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:56.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:56.049][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-15 01:05:56.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-15 01:05:56.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:56.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:56.054][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-15 01:05:56.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-15 01:05:56.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:56.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:56.060][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-15 01:05:56.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-15 01:05:56.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:56.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:56.066][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-15 01:05:56.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-15 01:05:56.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:56.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:56.072][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-15 01:05:56.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-15 01:05:56.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:56.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-15 01:05:56.078][self$createEntryFromContent] Accession numbers: .
biodb.DEBUG[2025-08-15 01:05:56.080][self$createEntryFromContent] Found 1 entry/ies without an accession number. Set it/them to NULL.
biodb.INFO [2025-08-15 01:05:56.098][biodb::testThat]
biodb.INFO [2025-08-15 01:05:56.101][biodb::testThat] Running test function  test.wrong.entry.among.good.ones  (" One wrong entry does not block the retrieval of good ones ").
biodb.INFO [2025-08-15 01:05:56.103][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-08-15 01:05:56.105][biodb::testThat]
biodb.DEBUG[2025-08-15 01:05:56.152][function(conn, opt)] IDS: [4]: "WRONGB, 15440, 2528, 7799"
biodb.DEBUG[2025-08-15 01:05:56.161][private$loadEntries] Creating entries from ids [3]: "WRONGB, 2528, 7799".
biodb.DEBUG[2025-08-15 01:05:56.163][conn$getEntryContent] Get ChEBI entry content(s) for 3 id(s)...
fscache.INFO [2025-08-15 01:05:56.166][cch$loadContents] Load 3 contents, from C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-08-15 01:05:56.186][FUN] Found encoding ISO-8859-1 for file C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/WRONGB.xml.
fscache.DEBUG[2025-08-15 01:05:56.206][FUN] Found encoding ISO-8859-1 for file C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/2528.xml.
fscache.DEBUG[2025-08-15 01:05:56.225][FUN] Found encoding ISO-8859-1 for file C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7799.xml.
biodb.DEBUG[2025-08-15 01:05:56.227][conn$getEntryContent] 3 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-15 01:05:56.229][self$createEntryFromContent] Creating ChEBI entries from 3 content(s).
biodb.DEBUG[2025-08-15 01:05:56.232][self$createEntryFromContent] Parsing 3 ChEBI entries.
biodb.DEBUG[2025-08-15 01:05:56.234][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-15 01:05:56.236][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-15 01:05:56.238][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-15 01:05:56.247][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-15 01:05:56.249][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-15 01:05:56.251][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-15 01:05:56.252][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-15 01:05:56.257][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-15 01:05:56.259][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-15 01:05:56.260][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:56.261][ef$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:56.263][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-15 01:05:56.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-15 01:05:56.265][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:56.266][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:56.268][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-15 01:05:56.269][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-15 01:05:56.271][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:56.273][ef$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:56.275][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-15 01:05:56.277][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-15 01:05:56.279][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:56.281][ef$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:56.284][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-15 01:05:56.286][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-15 01:05:56.288][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:56.290][ef$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:56.292][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-15 01:05:56.294][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-15 01:05:56.296][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:56.298][ef$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:56.301][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-15 01:05:56.303][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-15 01:05:56.305][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:56.307][ef$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:56.309][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-15 01:05:56.311][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:56.313][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:56.315][ef$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:56.318][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:56.320][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:56.322][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:56.324][ef$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:56.326][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-15 01:05:56.328][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-15 01:05:56.330][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:56.332][ef$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:56.335][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-15 01:05:56.337][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-15 01:05:56.339][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:56.341][ef$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:56.343][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-15 01:05:56.345][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-15 01:05:56.347][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:56.349][ef$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:56.351][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-15 01:05:56.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-15 01:05:56.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:56.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:56.360][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-15 01:05:56.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-15 01:05:56.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:56.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:56.368][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-15 01:05:56.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-15 01:05:56.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:56.374][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:56.376][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-15 01:05:56.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-15 01:05:56.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:56.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:56.384][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-15 01:05:56.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-15 01:05:56.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:56.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:56.392][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-15 01:05:56.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-15 01:05:56.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:56.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:56.400][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-15 01:05:56.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-15 01:05:56.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:56.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-15 01:05:56.408][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-15 01:05:56.410][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-15 01:05:56.412][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-15 01:05:56.423][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-15 01:05:56.425][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-15 01:05:56.427][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-15 01:05:56.429][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-15 01:05:56.433][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-15 01:05:56.435][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-15 01:05:56.437][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:56.439][ef$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:56.442][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-15 01:05:56.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-15 01:05:56.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:56.448][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:56.450][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-15 01:05:56.452][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-15 01:05:56.454][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:56.456][ef$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:56.459][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-15 01:05:56.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-15 01:05:56.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:56.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:56.467][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-15 01:05:56.469][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-15 01:05:56.471][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:56.473][ef$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:56.476][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-15 01:05:56.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-15 01:05:56.480][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:56.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:56.484][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-15 01:05:56.486][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-15 01:05:56.488][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:56.490][ef$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:56.492][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-15 01:05:56.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-15 01:05:56.497][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:56.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:56.501][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-15 01:05:56.503][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-15 01:05:56.505][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:56.507][ef$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:56.509][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-15 01:05:56.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-15 01:05:56.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:56.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:56.527][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-15 01:05:56.530][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-15 01:05:56.532][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:56.535][ef$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:56.537][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-15 01:05:56.540][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-15 01:05:56.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:56.543][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:56.546][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-15 01:05:56.548][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:56.550][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:56.551][ef$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:56.554][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-15 01:05:56.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:56.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:56.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:56.562][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:56.564][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:56.566][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:56.568][ef$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:56.570][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:56.573][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:56.575][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:56.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:56.579][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-15 01:05:56.581][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-15 01:05:56.583][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:56.585][ef$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:56.588][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-15 01:05:56.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-15 01:05:56.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:56.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:56.596][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-15 01:05:56.598][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-15 01:05:56.600][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:56.602][ef$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:56.605][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-15 01:05:56.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-15 01:05:56.609][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:56.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:56.613][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-15 01:05:56.615][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-15 01:05:56.617][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:56.619][ef$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:56.621][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-15 01:05:56.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-15 01:05:56.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:56.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:56.629][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-15 01:05:56.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-15 01:05:56.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:56.635][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:56.637][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-15 01:05:56.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-15 01:05:56.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:56.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:56.645][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-15 01:05:56.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-15 01:05:56.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:56.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:56.653][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-15 01:05:56.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-15 01:05:56.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:56.659][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:56.661][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-15 01:05:56.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-15 01:05:56.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:56.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:56.669][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-15 01:05:56.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-15 01:05:56.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:56.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:56.677][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-15 01:05:56.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-15 01:05:56.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:56.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-15 01:05:56.686][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-15 01:05:56.687][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-15 01:05:56.689][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-15 01:05:56.698][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-15 01:05:56.699][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-15 01:05:56.700][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-15 01:05:56.702][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-15 01:05:56.704][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-15 01:05:56.706][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-15 01:05:56.708][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:56.710][ef$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:56.712][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-15 01:05:56.713][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-15 01:05:56.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:56.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:56.717][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-15 01:05:56.719][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-15 01:05:56.720][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:56.721][ef$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:56.723][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-15 01:05:56.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-15 01:05:56.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:56.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:56.729][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-15 01:05:56.730][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-15 01:05:56.731][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:56.732][ef$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:56.734][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-15 01:05:56.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-15 01:05:56.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:56.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:56.740][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-15 01:05:56.741][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-15 01:05:56.742][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:56.744][ef$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:56.745][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-08-15 01:05:56.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-15 01:05:56.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:56.749][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:56.750][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-15 01:05:56.752][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-15 01:05:56.753][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:56.754][ef$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:56.756][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-15 01:05:56.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-15 01:05:56.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:56.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:56.761][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-15 01:05:56.763][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-15 01:05:56.764][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:56.766][ef$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:56.768][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-15 01:05:56.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-15 01:05:56.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:56.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:56.774][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-15 01:05:56.777][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:56.779][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:56.780][ef$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:56.783][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-15 01:05:56.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-15 01:05:56.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:56.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:56.791][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:56.794][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:56.796][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:56.798][ef$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:56.800][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:56.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:56.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:56.817][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:56.820][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-15 01:05:56.822][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-15 01:05:56.824][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:56.827][ef$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:56.830][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-15 01:05:56.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-15 01:05:56.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:56.835][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:56.836][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-15 01:05:56.838][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-15 01:05:56.839][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:56.840][ef$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:56.842][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-15 01:05:56.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-15 01:05:56.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:56.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:56.847][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-15 01:05:56.849][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-15 01:05:56.850][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:56.851][ef$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:56.852][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-15 01:05:56.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-15 01:05:56.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:56.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:56.858][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-15 01:05:56.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-15 01:05:56.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:56.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:56.863][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-15 01:05:56.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-15 01:05:56.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:56.869][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:56.871][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-15 01:05:56.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-15 01:05:56.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:56.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:56.878][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-15 01:05:56.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-15 01:05:56.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:56.882][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:56.884][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-15 01:05:56.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-15 01:05:56.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:56.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:56.889][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-15 01:05:56.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-15 01:05:56.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:56.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:56.895][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-15 01:05:56.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-15 01:05:56.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:56.899][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:56.900][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-15 01:05:56.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-15 01:05:56.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:56.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:56.906][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-15 01:05:56.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-15 01:05:56.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:56.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:56.911][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-15 01:05:56.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-15 01:05:56.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:56.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:56.917][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-15 01:05:56.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-15 01:05:56.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:56.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:56.922][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-15 01:05:56.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-15 01:05:56.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:56.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:56.927][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-15 01:05:56.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-15 01:05:56.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:56.931][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:56.933][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-15 01:05:56.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-15 01:05:56.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:56.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:56.941][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-15 01:05:56.943][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-15 01:05:56.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:56.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:56.949][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-15 01:05:56.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-15 01:05:56.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:56.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-15 01:05:56.956][self$createEntryFromContent] Accession numbers: , 2528, 7799.
biodb.DEBUG[2025-08-15 01:05:56.958][self$createEntryFromContent] Found 1 entry/ies without an accession number. Set it/them to NULL.
biodb.DEBUG[2025-08-15 01:05:56.960][function(conn, opt)] Entries: [4]: "NULL, <environment>, <environment>, <environment>"
biodb.INFO [2025-08-15 01:05:56.992][biodb::testThat]
biodb.INFO [2025-08-15 01:05:56.994][biodb::testThat] Running test function  test.peak.table  (" The peak table is correct. ").
biodb.INFO [2025-08-15 01:05:56.996][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-08-15 01:05:56.998][biodb::testThat]
biodb.INFO [2025-08-15 01:05:57.046][biodb::testThat]
biodb.INFO [2025-08-15 01:05:57.048][biodb::testThat] Running test function  test.nb.entries  (" Nb entries is positive. ").
biodb.INFO [2025-08-15 01:05:57.050][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-08-15 01:05:57.052][biodb::testThat]
biodb.INFO [2025-08-15 01:05:57.072][biodb::testThat]
biodb.INFO [2025-08-15 01:05:57.074][biodb::testThat] Running test function  test.entry.ids  (" We can get a list of entry ids. ").
biodb.INFO [2025-08-15 01:05:57.076][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-08-15 01:05:57.078][biodb::testThat]
sched.DEBUG[2025-08-15 01:05:57.081][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=1*&searchCategory=CHEBI ID&maximumResults=100&starsCategory=ALL".
fscache.INFO [2025-08-15 01:05:57.085][private$cache$loadContents] Load 1 contents, from C:\Users\biocbuild\AppData\Local/R/cache/R/sched.
fscache.DEBUG[2025-08-15 01:05:57.131][FUN] Found encoding ISO-8859-1 for file C:\Users\biocbuild\AppData\Local/R/cache/R/sched/02ece1564def26723013d564c4071584.content.
sched.DEBUG[2025-08-15 01:05:57.133][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.TRACE[2025-08-15 01:05:57.160][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-15 01:05:57.161][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-15 01:05:57.163][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:57.164][ef$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:05:57.166][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:57.168][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:05:57.170][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:05:57.172][ef$get] fields variable is a list.
biodb.INFO [2025-08-15 01:05:57.174][biodb::testThat]
biodb.INFO [2025-08-15 01:05:57.176][biodb::testThat] Running test function  test.annotateMzValues  (" annotateMzValues() works correctly. ").
biodb.INFO [2025-08-15 01:05:57.177][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-08-15 01:05:57.178][biodb::testThat]
biodb.ERROR[2025-08-15 01:05:57.200][conn$annotateMzValues] No column named "mz" was found inside data frame.
biodb.ERROR[2025-08-15 01:05:57.216][ef$checkIsDefined] Field(s) "foo" is/are not defined.
biodb.INFO [2025-08-15 01:05:57.231][biodb$terminate] Closing BiodbMain instance...
biodb.INFO [2025-08-15 01:05:57.232][self$deleteConn] Connector "chebi" deleted.
biodb.DEBUG[2025-08-15 01:05:57.234][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2025-08-15 01:05:57.236][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-15 01:05:57.237][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-15 01:05:57.238][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-15 01:05:57.240][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-15 01:05:57.241][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2025-08-15 01:05:57.242][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2025-08-15 01:05:57.255][biodb::testContext]
biodb.INFO [2025-08-15 01:05:57.256][biodb::testContext] ********************************************************************************
biodb.INFO [2025-08-15 01:05:57.259][biodb::testContext] Test context - Test conversions
biodb.INFO [2025-08-15 01:05:57.261][biodb::testContext] ********************************************************************************
biodb.INFO [2025-08-15 01:05:57.263][biodb::testContext]
biodb.INFO [2025-08-15 01:05:57.267][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.17.1.
biodb.DEBUG[2025-08-15 01:05:57.269][self$loadDefinitions] Load definitions from file "F:/biocbuild/bbs-3.22-bioc/R/library/biodb/definitions.yml".
biodb.DEBUG[2025-08-15 01:05:57.277][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-08-15 01:05:57.279][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2025-08-15 01:05:57.281][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2025-08-15 01:05:57.283][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-15 01:05:57.284][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-15 01:05:57.286][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-15 01:05:57.288][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2025-08-15 01:05:57.290][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2025-08-15 01:05:57.292][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-15 01:05:57.293][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-15 01:05:57.295][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-15 01:05:57.297][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2025-08-15 01:05:57.299][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2025-08-15 01:05:57.300][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-15 01:05:57.302][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-15 01:05:57.304][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-15 01:05:57.306][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2025-08-15 01:05:57.308][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2025-08-15 01:05:57.310][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2025-08-15 01:05:57.311][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-15 01:05:57.313][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-15 01:05:57.315][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-15 01:05:57.317][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2025-08-15 01:05:57.318][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2025-08-15 01:05:57.320][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2025-08-15 01:05:57.322][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-15 01:05:57.324][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-15 01:05:57.326][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-15 01:05:57.327][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2025-08-15 01:05:57.329][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2025-08-15 01:05:57.331][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-15 01:05:57.333][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-15 01:05:57.339][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-15 01:05:57.341][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2025-08-15 01:05:57.343][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2025-08-15 01:05:57.345][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2025-08-15 01:05:57.347][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-15 01:05:57.349][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-15 01:05:57.350][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-15 01:05:57.352][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2025-08-15 01:05:57.354][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2025-08-15 01:05:57.356][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-15 01:05:57.358][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-15 01:05:57.359][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-15 01:05:57.361][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2025-08-15 01:05:57.363][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2025-08-15 01:05:57.365][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2025-08-15 01:05:57.367][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-15 01:05:57.368][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-15 01:05:57.370][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-15 01:05:57.372][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2025-08-15 01:05:57.374][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2025-08-15 01:05:57.376][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2025-08-15 01:05:57.378][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2025-08-15 01:05:57.380][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2025-08-15 01:05:57.382][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2025-08-15 01:05:57.383][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-15 01:05:57.385][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-15 01:05:57.387][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-15 01:05:57.389][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2025-08-15 01:05:57.400][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2025-08-15 01:05:57.403][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-15 01:05:57.405][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-15 01:05:57.407][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-15 01:05:57.409][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2025-08-15 01:05:57.412][self$set] Set key entries.sep to "|".
biodb.DEBUG[2025-08-15 01:05:57.413][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-15 01:05:57.415][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-15 01:05:57.417][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-15 01:05:57.419][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2025-08-15 01:05:57.421][self$set] Set key offline to FALSE.
biodb.DEBUG[2025-08-15 01:05:57.423][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-15 01:05:57.425][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-15 01:05:57.426][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-15 01:05:57.428][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2025-08-15 01:05:57.430][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2025-08-15 01:05:57.431][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2025-08-15 01:05:57.433][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-15 01:05:57.434][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-15 01:05:57.435][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-15 01:05:57.436][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2025-08-15 01:05:57.438][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2025-08-15 01:05:57.442][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2025-08-15 01:05:57.444][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-15 01:05:57.446][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-15 01:05:57.447][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-15 01:05:57.449][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2025-08-15 01:05:57.451][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2025-08-15 01:05:57.453][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2025-08-15 01:05:57.455][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-15 01:05:57.456][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-15 01:05:57.458][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-15 01:05:57.460][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2025-08-15 01:05:57.463][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-08-15 01:05:57.465][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2025-08-15 01:05:57.466][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-08-15 01:05:57.467][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-08-15 01:05:57.469][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-08-15 01:05:57.470][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-08-15 01:05:57.471][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-08-15 01:05:57.473][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-08-15 01:05:57.474][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2025-08-15 01:05:57.476][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-08-15 01:05:57.477][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-08-15 01:05:57.478][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2025-08-15 01:05:57.480][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-08-15 01:05:57.481][self$setPropertyValue] Setting property "parsing.expr" to "<NULL>".
biodb.DEBUG[2025-08-15 01:05:57.483][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-08-15 01:05:57.484][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-08-15 01:05:57.484][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-08-15 01:05:57.484][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-08-15 01:05:57.484][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2025-08-15 01:05:57.484][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2025-08-15 01:05:57.486][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-08-15 01:05:57.487][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-08-15 01:05:57.488][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-08-15 01:05:57.490][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-08-15 01:05:57.491][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-08-15 01:05:57.492][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-08-15 01:05:57.494][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-08-15 01:05:57.496][self$setPropertyValue] Setting property "urls" to "<NULL>".
biodb.DEBUG[2025-08-15 01:05:57.497][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-08-15 01:05:57.498][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-08-15 01:05:57.499][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-08-15 01:05:57.501][self$setPropertyValue] Setting property "xml.ns" to "<NULL>".
biodb.DEBUG[2025-08-15 01:05:57.502][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2025-08-15 01:05:57.505][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-08-15 01:05:57.507][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2025-08-15 01:05:57.508][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-08-15 01:05:57.510][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-08-15 01:05:57.511][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-08-15 01:05:57.512][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-08-15 01:05:57.514][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-08-15 01:05:57.516][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-08-15 01:05:57.518][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2025-08-15 01:05:57.519][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-08-15 01:05:57.520][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-08-15 01:05:57.522][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2025-08-15 01:05:57.523][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-08-15 01:05:57.524][self$setPropertyValue] Setting property "parsing.expr" to "<NULL>".
biodb.DEBUG[2025-08-15 01:05:57.526][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-08-15 01:05:57.527][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-08-15 01:05:57.527][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-08-15 01:05:57.527][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-08-15 01:05:57.527][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2025-08-15 01:05:57.527][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2025-08-15 01:05:57.529][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-08-15 01:05:57.530][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-08-15 01:05:57.532][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-08-15 01:05:57.533][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-08-15 01:05:57.535][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-08-15 01:05:57.536][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-08-15 01:05:57.537][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-08-15 01:05:57.539][self$setPropertyValue] Setting property "urls" to "<NULL>".
biodb.DEBUG[2025-08-15 01:05:57.540][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-08-15 01:05:57.541][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-08-15 01:05:57.542][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-08-15 01:05:57.544][self$setPropertyValue] Setting property "xml.ns" to "<NULL>".
biodb.DEBUG[2025-08-15 01:05:57.545][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2025-08-15 01:05:57.547][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-08-15 01:05:57.548][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2025-08-15 01:05:57.550][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-08-15 01:05:57.551][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-08-15 01:05:57.552][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-08-15 01:05:57.553][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-08-15 01:05:57.555][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-08-15 01:05:57.556][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-08-15 01:05:57.557][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2025-08-15 01:05:57.558][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-08-15 01:05:57.560][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2025-08-15 01:05:57.561][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2025-08-15 01:05:57.563][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-08-15 01:05:57.565][self$setPropertyValue] Setting property "parsing.expr" to "<NULL>".
biodb.DEBUG[2025-08-15 01:05:57.567][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-08-15 01:05:57.568][self$setPropertyValue] Setting property "searchable.fields" to "<NULL>".
biodb.DEBUG[2025-08-15 01:05:57.569][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-08-15 01:05:57.571][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-08-15 01:05:57.572][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-08-15 01:05:57.573][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-08-15 01:05:57.574][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-08-15 01:05:57.575][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-08-15 01:05:57.577][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-08-15 01:05:57.578][self$setPropertyValue] Setting property "urls" to "<NULL>".
biodb.DEBUG[2025-08-15 01:05:57.579][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-08-15 01:05:57.580][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-08-15 01:05:57.582][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-08-15 01:05:57.583][self$setPropertyValue] Setting property "xml.ns" to "<NULL>".
biodb.DEBUG[2025-08-15 01:05:57.585][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2025-08-15 01:05:57.587][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-08-15 01:05:57.589][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2025-08-15 01:05:57.591][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-08-15 01:05:57.592][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-08-15 01:05:57.594][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-08-15 01:05:57.595][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-08-15 01:05:57.597][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-08-15 01:05:57.598][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-08-15 01:05:57.600][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2025-08-15 01:05:57.602][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-08-15 01:05:57.603][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2025-08-15 01:05:57.605][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2025-08-15 01:05:57.606][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-08-15 01:05:57.607][self$setPropertyValue] Setting property "parsing.expr" to "<NULL>".
biodb.DEBUG[2025-08-15 01:05:57.609][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-08-15 01:05:57.610][self$setPropertyValue] Setting property "searchable.fields" to "<NULL>".
biodb.DEBUG[2025-08-15 01:05:57.612][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-08-15 01:05:57.613][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-08-15 01:05:57.615][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-08-15 01:05:57.616][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-08-15 01:05:57.618][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-08-15 01:05:57.619][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-08-15 01:05:57.620][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-08-15 01:05:57.622][self$setPropertyValue] Setting property "urls" to "<NULL>".
biodb.DEBUG[2025-08-15 01:05:57.623][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-08-15 01:05:57.624][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-08-15 01:05:57.625][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-08-15 01:05:57.627][self$setPropertyValue] Setting property "xml.ns" to "<NULL>".
biodb.DEBUG[2025-08-15 01:05:57.638][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-08-15 01:05:57.640][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2025-08-15 01:05:57.643][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-15 01:05:57.645][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-15 01:05:57.646][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-15 01:05:57.648][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-15 01:05:57.650][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-15 01:05:57.652][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-15 01:05:57.654][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-15 01:05:57.655][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-15 01:05:57.657][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-15 01:05:57.659][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-15 01:05:57.661][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-15 01:05:57.662][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-15 01:05:57.664][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-15 01:05:57.666][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-15 01:05:57.668][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-15 01:05:57.669][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-15 01:05:57.671][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-15 01:05:57.673][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-15 01:05:57.675][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-15 01:05:57.676][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-15 01:05:57.677][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-15 01:05:57.678][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-15 01:05:57.679][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-15 01:05:57.681][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-15 01:05:57.682][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-15 01:05:57.683][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-15 01:05:57.684][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-15 01:05:57.686][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-15 01:05:57.687][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-15 01:05:57.688][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-15 01:05:57.689][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-15 01:05:57.690][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-15 01:05:57.691][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-15 01:05:57.692][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-15 01:05:57.694][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-15 01:05:57.695][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-15 01:05:57.696][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-15 01:05:57.697][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-15 01:05:57.698][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-15 01:05:57.699][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-15 01:05:57.701][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-15 01:05:57.702][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-15 01:05:57.703][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-15 01:05:57.704][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-15 01:05:57.705][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-15 01:05:57.706][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-15 01:05:57.708][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-15 01:05:57.709][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-15 01:05:57.710][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-15 01:05:57.711][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-15 01:05:57.712][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-15 01:05:57.714][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-15 01:05:57.715][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-15 01:05:57.716][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-15 01:05:57.717][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-15 01:05:57.718][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-15 01:05:57.719][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-15 01:05:57.720][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-15 01:05:57.722][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-15 01:05:57.723][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-15 01:05:57.724][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-15 01:05:57.725][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-15 01:05:57.726][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-15 01:05:57.727][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-15 01:05:57.729][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-15 01:05:57.730][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-15 01:05:57.731][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-15 01:05:57.732][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-15 01:05:57.733][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-15 01:05:57.734][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-15 01:05:57.736][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-15 01:05:57.737][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-15 01:05:57.738][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-15 01:05:57.739][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-15 01:05:57.740][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-15 01:05:57.742][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-15 01:05:57.743][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-15 01:05:57.744][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-15 01:05:57.745][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-15 01:05:57.746][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-15 01:05:57.748][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-15 01:05:57.749][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2025-08-15 01:05:57.751][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2025-08-15 01:05:57.752][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2025-08-15 01:05:57.754][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2025-08-15 01:05:57.756][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2025-08-15 01:05:57.758][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2025-08-15 01:05:57.760][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2025-08-15 01:05:57.763][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2025-08-15 01:05:57.765][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2025-08-15 01:05:57.767][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2025-08-15 01:05:57.770][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2025-08-15 01:05:57.771][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2025-08-15 01:05:57.773][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2025-08-15 01:05:57.776][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2025-08-15 01:05:57.779][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2025-08-15 01:05:57.781][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2025-08-15 01:05:57.784][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2025-08-15 01:05:57.786][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2025-08-15 01:05:57.789][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2025-08-15 01:05:57.792][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2025-08-15 01:05:57.795][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2025-08-15 01:05:57.798][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2025-08-15 01:05:57.800][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2025-08-15 01:05:57.803][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2025-08-15 01:05:57.806][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2025-08-15 01:05:57.809][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2025-08-15 01:05:57.811][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2025-08-15 01:05:57.814][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2025-08-15 01:05:57.817][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2025-08-15 01:05:57.820][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2025-08-15 01:05:57.823][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2025-08-15 01:05:57.825][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2025-08-15 01:05:57.828][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2025-08-15 01:05:57.831][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2025-08-15 01:05:57.833][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2025-08-15 01:05:57.836][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2025-08-15 01:05:57.839][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2025-08-15 01:05:57.841][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2025-08-15 01:05:57.844][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2025-08-15 01:05:57.846][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2025-08-15 01:05:57.849][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2025-08-15 01:05:57.852][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2025-08-15 01:05:57.854][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2025-08-15 01:05:57.857][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2025-08-15 01:05:57.859][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2025-08-15 01:05:57.862][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2025-08-15 01:05:57.864][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2025-08-15 01:05:57.867][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2025-08-15 01:05:57.869][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2025-08-15 01:05:57.872][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2025-08-15 01:05:57.885][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2025-08-15 01:05:57.888][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2025-08-15 01:05:57.891][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2025-08-15 01:05:57.894][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2025-08-15 01:05:57.898][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2025-08-15 01:05:57.901][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2025-08-15 01:05:57.904][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2025-08-15 01:05:57.907][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2025-08-15 01:05:57.910][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2025-08-15 01:05:57.912][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2025-08-15 01:05:57.915][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2025-08-15 01:05:57.918][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2025-08-15 01:05:57.921][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2025-08-15 01:05:57.923][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2025-08-15 01:05:57.926][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2025-08-15 01:05:57.929][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2025-08-15 01:05:57.932][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2025-08-15 01:05:57.934][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2025-08-15 01:05:57.937][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2025-08-15 01:05:57.940][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2025-08-15 01:05:57.942][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2025-08-15 01:05:57.945][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2025-08-15 01:05:57.948][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2025-08-15 01:05:57.950][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2025-08-15 01:05:57.953][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2025-08-15 01:05:57.956][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2025-08-15 01:05:57.958][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2025-08-15 01:05:57.961][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2025-08-15 01:05:57.964][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2025-08-15 01:05:57.967][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2025-08-15 01:05:57.969][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2025-08-15 01:05:57.972][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2025-08-15 01:05:57.975][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2025-08-15 01:05:57.977][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2025-08-15 01:05:57.979][initialize] This is biodb version 1.17.1.
biodb.DEBUG[2025-08-15 01:05:57.981][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-08-15 01:05:57.982][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2025-08-15 01:05:57.983][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-15 01:05:57.984][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2025-08-15 01:05:57.986][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-15 01:05:57.987][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-15 01:05:57.988][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-15 01:05:57.990][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-15 01:05:57.992][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-15 01:05:57.994][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-15 01:05:57.995][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-15 01:05:57.997][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-15 01:05:57.998][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-15 01:05:58.000][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-15 01:05:58.002][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-15 01:05:58.004][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-15 01:05:58.006][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-15 01:05:58.007][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-15 01:05:58.009][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-15 01:05:58.011][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-15 01:05:58.013][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-15 01:05:58.015][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-15 01:05:58.017][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-15 01:05:58.019][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-15 01:05:58.021][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-15 01:05:58.023][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-15 01:05:58.025][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-15 01:05:58.027][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-15 01:05:58.028][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-15 01:05:58.030][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-15 01:05:58.032][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-15 01:05:58.034][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-15 01:05:58.036][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-15 01:05:58.038][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-15 01:05:58.039][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-15 01:05:58.041][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-15 01:05:58.042][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-15 01:05:58.043][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-15 01:05:58.045][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-15 01:05:58.046][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-15 01:05:58.048][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-15 01:05:58.050][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-15 01:05:58.052][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-15 01:05:58.054][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-15 01:05:58.055][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-15 01:05:58.057][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-15 01:05:58.059][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-15 01:05:58.061][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-15 01:05:58.062][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-15 01:05:58.064][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-15 01:05:58.066][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-15 01:05:58.068][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-15 01:05:58.070][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-15 01:05:58.072][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-15 01:05:58.074][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-15 01:05:58.076][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-15 01:05:58.078][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-15 01:05:58.079][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-15 01:05:58.081][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-15 01:05:58.083][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-15 01:05:58.085][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-15 01:05:58.087][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-15 01:05:58.089][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-15 01:05:58.090][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-15 01:05:58.092][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-15 01:05:58.094][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-15 01:05:58.096][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-15 01:05:58.097][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-15 01:05:58.099][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-15 01:05:58.101][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-15 01:05:58.103][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-15 01:05:58.104][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-15 01:05:58.106][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-15 01:05:58.108][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-15 01:05:58.110][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-15 01:05:58.111][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-15 01:05:58.113][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-15 01:05:58.115][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-15 01:05:58.117][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-15 01:05:58.118][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-15 01:05:58.120][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-15 01:05:58.122][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-15 01:05:58.124][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-15 01:05:58.126][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-15 01:05:58.128][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-15 01:05:58.129][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-15 01:05:58.131][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-15 01:05:58.133][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-15 01:05:58.135][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-15 01:05:58.137][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-15 01:05:58.138][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-15 01:05:58.140][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-15 01:05:58.142][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-15 01:05:58.144][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-15 01:05:58.145][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-15 01:05:58.147][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-15 01:05:58.149][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-15 01:05:58.151][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-15 01:05:58.153][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-15 01:05:58.154][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-15 01:05:58.156][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-15 01:05:58.158][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-15 01:05:58.160][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-15 01:05:58.162][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-15 01:05:58.163][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-15 01:05:58.165][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-15 01:05:58.174][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-15 01:05:58.176][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-15 01:05:58.177][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-15 01:05:58.179][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-15 01:05:58.180][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-15 01:05:58.182][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-15 01:05:58.183][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-15 01:05:58.185][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-15 01:05:58.187][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-15 01:05:58.189][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-15 01:05:58.190][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-15 01:05:58.195][biodb$loadDefinitions] Load definitions from file "F:/biocbuild/bbs-3.22-bioc/R/library/biodbChebi/definitions.yml".
biodb.DEBUG[2025-08-15 01:05:58.198][self$getDbsInfo()$define] Define connector chebi.
biodb.DEBUG[2025-08-15 01:05:58.200][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-08-15 01:05:58.202][self$setPropertyValue] Setting property "description" to "NA".
biodb.DEBUG[2025-08-15 01:05:58.203][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-08-15 01:05:58.205][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-08-15 01:05:58.206][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-08-15 01:05:58.208][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-08-15 01:05:58.209][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2025-08-15 01:05:58.210][self$setPropertyValue] Setting property "entry.content.encoding" to "UTF-8".
biodb.DEBUG[2025-08-15 01:05:58.212][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2025-08-15 01:05:58.214][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-08-15 01:05:58.216][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-08-15 01:05:58.218][self$setPropertyValue] Setting property "name" to "ChEBI".
biodb.DEBUG[2025-08-15 01:05:58.219][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-08-15 01:05:58.221][self$setPropertyValue] Setting property "parsing.expr" to "substring-after(//chebi:return/chebi:chebiId,'CHEBI:')".
biodb.DEBUG[2025-08-15 01:05:58.221][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:charge".
biodb.DEBUG[2025-08-15 01:05:58.221][self$setPropertyValue] Setting property "parsing.expr" to "c("//chebi:Formulae/chebi:source[text()='ChEBI']/../chebi:data", "(//chebi:Formulae/chebi:data)[1]")".
biodb.DEBUG[2025-08-15 01:05:58.221][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:inchi".
biodb.DEBUG[2025-08-15 01:05:58.221][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:inchiKey".
biodb.DEBUG[2025-08-15 01:05:58.221][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:DatabaseLinks/chebi:type[text()='KEGG COMPOUND accession']/../chebi:data".
biodb.DEBUG[2025-08-15 01:05:58.221][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:mass".
biodb.DEBUG[2025-08-15 01:05:58.221][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:monoisotopicMass".
biodb.DEBUG[2025-08-15 01:05:58.221][self$setPropertyValue] Setting property "parsing.expr" to "c("//chebi:chebiAsciiName", "//chebi:Synonyms/chebi:data")".
biodb.DEBUG[2025-08-15 01:05:58.221][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:entityStar".
biodb.DEBUG[2025-08-15 01:05:58.221][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:smiles".
biodb.DEBUG[2025-08-15 01:05:58.223][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2025-08-15 01:05:58.225][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-08-15 01:05:58.225][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-08-15 01:05:58.225][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-08-15 01:05:58.227][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2025-08-15 01:05:58.229][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-08-15 01:05:58.231][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-08-15 01:05:58.233][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-08-15 01:05:58.234][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-08-15 01:05:58.236][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-08-15 01:05:58.237][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-08-15 01:05:58.239][self$setPropertyValue] Setting property "urls" to "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-08-15 01:05:58.239][self$setPropertyValue] Setting property "urls" to "https://www.ebi.ac.uk/webservices/chebi/2.0/".
biodb.DEBUG[2025-08-15 01:05:58.241][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-08-15 01:05:58.242][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-08-15 01:05:58.244][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2025-08-15 01:05:58.245][self$setPropertyValue] Setting property "xml.ns" to "https://www.ebi.ac.uk/webservices/chebi".
biodb.DEBUG[2025-08-15 01:05:58.245][self$setPropertyValue] Setting property "xml.ns" to "http://www.w3.org/2001/XMLSchema".
biodb.DEBUG[2025-08-15 01:05:58.248][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2025-08-15 01:05:58.251][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2025-08-15 01:05:58.254][self$getEntryFields()$define] Define field n_stars.
biodb.DEBUG[2025-08-15 01:05:58.256][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2025-08-15 01:05:58.259][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2025-08-15 01:05:58.262][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2025-08-15 01:05:58.268][super$initialize] Initialize connector chebi.
biodb.DEBUG[2025-08-15 01:05:58.293][biodb$getFactory()$createConn] Creating new connector chebi for database class chebi .
biodb.INFO [2025-08-15 01:05:58.296][biodb::testThat]
biodb.INFO [2025-08-15 01:05:58.298][biodb::testThat] Running test function  test_chebi_convCasToChebi  (" convCasToChebi() works. ").
biodb.INFO [2025-08-15 01:05:58.300][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-08-15 01:05:58.302][biodb::testThat]
sched.DEBUG[2025-08-15 01:05:58.308][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/webservice?wsdl".
fscache.INFO [2025-08-15 01:05:58.312][private$cache$loadContents] Load 1 contents, from C:\Users\biocbuild\AppData\Local/R/cache/R/sched.
fscache.DEBUG[2025-08-15 01:05:58.320][FUN] Found encoding ISO-8859-1 for file C:\Users\biocbuild\AppData\Local/R/cache/R/sched/a2ed8f44d213d85be0d7e9a0448c78ad.content.
sched.DEBUG[2025-08-15 01:05:58.324][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
sched.DEBUG[2025-08-15 01:05:58.331][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=51-41-2&searchCategory=REGISTRY NUMBERS&maximumResults=10&starsCategory=ALL".
fscache.INFO [2025-08-15 01:05:58.336][private$cache$loadContents] Load 1 contents, from C:\Users\biocbuild\AppData\Local/R/cache/R/sched.
fscache.DEBUG[2025-08-15 01:05:58.359][FUN] Found encoding ISO-8859-1 for file C:\Users\biocbuild\AppData\Local/R/cache/R/sched/a18c63ccef4470d3f0d2883a74f87ee1.content.
sched.DEBUG[2025-08-15 01:05:58.361][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-08-15 01:05:58.365][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-15 01:05:58.367][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-15 01:05:58.369][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-15 01:05:58.425][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-15 01:05:58.427][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-15 01:05:58.428][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-15 01:05:58.429][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-08-15 01:05:58.432][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=87605-72-9&searchCategory=REGISTRY NUMBERS&maximumResults=10&starsCategory=ALL".
fscache.INFO [2025-08-15 01:05:58.435][private$cache$loadContents] Load 1 contents, from C:\Users\biocbuild\AppData\Local/R/cache/R/sched.
fscache.DEBUG[2025-08-15 01:05:58.457][FUN] Found encoding ISO-8859-1 for file C:\Users\biocbuild\AppData\Local/R/cache/R/sched/b6b884df7b7bd565d1ac86525427e09b.content.
sched.DEBUG[2025-08-15 01:05:58.459][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-08-15 01:05:58.463][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-15 01:05:58.466][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-15 01:05:58.468][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-15 01:05:58.479][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-15 01:05:58.481][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-15 01:05:58.483][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-15 01:05:58.485][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-15 01:05:58.513][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-15 01:05:58.515][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-15 01:05:58.517][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-15 01:05:58.528][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-15 01:05:58.530][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-15 01:05:58.532][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-15 01:05:58.533][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-08-15 01:05:58.541][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=51-41-2&searchCategory=REGISTRY NUMBERS&maximumResults=10&starsCategory=ALL".
fscache.INFO [2025-08-15 01:05:58.546][private$cache$loadContents] Load 1 contents, from C:\Users\biocbuild\AppData\Local/R/cache/R/sched.
fscache.DEBUG[2025-08-15 01:05:58.550][FUN] Found encoding ISO-8859-1 for file C:\Users\biocbuild\AppData\Local/R/cache/R/sched/a18c63ccef4470d3f0d2883a74f87ee1.content.
sched.DEBUG[2025-08-15 01:05:58.552][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-08-15 01:05:58.555][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-15 01:05:58.556][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-15 01:05:58.558][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-15 01:05:58.565][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-15 01:05:58.787][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-15 01:05:58.789][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-15 01:05:58.791][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-08-15 01:05:58.794][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=87605-72-9&searchCategory=REGISTRY NUMBERS&maximumResults=10&starsCategory=ALL".
fscache.INFO [2025-08-15 01:05:58.799][private$cache$loadContents] Load 1 contents, from C:\Users\biocbuild\AppData\Local/R/cache/R/sched.
fscache.DEBUG[2025-08-15 01:05:58.802][FUN] Found encoding ISO-8859-1 for file C:\Users\biocbuild\AppData\Local/R/cache/R/sched/b6b884df7b7bd565d1ac86525427e09b.content.
sched.DEBUG[2025-08-15 01:05:58.804][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-08-15 01:05:58.808][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-15 01:05:58.810][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-15 01:05:58.812][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-15 01:05:58.823][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-15 01:05:58.824][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-15 01:05:58.826][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-15 01:05:58.828][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-15 01:05:58.830][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-15 01:05:58.831][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-15 01:05:58.833][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-15 01:05:58.841][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-15 01:05:58.842][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-15 01:05:58.844][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-15 01:05:58.845][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-08-15 01:05:58.850][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=51-41-2&searchCategory=REGISTRY NUMBERS&maximumResults=10&starsCategory=ALL".
fscache.INFO [2025-08-15 01:05:58.853][private$cache$loadContents] Load 1 contents, from C:\Users\biocbuild\AppData\Local/R/cache/R/sched.
fscache.DEBUG[2025-08-15 01:05:58.855][FUN] Found encoding ISO-8859-1 for file C:\Users\biocbuild\AppData\Local/R/cache/R/sched/a18c63ccef4470d3f0d2883a74f87ee1.content.
sched.DEBUG[2025-08-15 01:05:58.857][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-08-15 01:05:58.859][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-15 01:05:58.861][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-15 01:05:58.862][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-15 01:05:58.871][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-15 01:05:58.872][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-15 01:05:58.874][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-15 01:05:58.875][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-08-15 01:05:58.878][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=87605-72-9&searchCategory=REGISTRY NUMBERS&maximumResults=10&starsCategory=ALL".
fscache.INFO [2025-08-15 01:05:58.882][private$cache$loadContents] Load 1 contents, from C:\Users\biocbuild\AppData\Local/R/cache/R/sched.
fscache.DEBUG[2025-08-15 01:05:58.884][FUN] Found encoding ISO-8859-1 for file C:\Users\biocbuild\AppData\Local/R/cache/R/sched/b6b884df7b7bd565d1ac86525427e09b.content.
sched.DEBUG[2025-08-15 01:05:58.886][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-08-15 01:05:58.888][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-15 01:05:58.889][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-15 01:05:58.891][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-15 01:05:58.901][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-15 01:05:58.904][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-15 01:05:58.905][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-15 01:05:58.907][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-08-15 01:05:58.909][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=14215-68-0&searchCategory=REGISTRY NUMBERS&maximumResults=10&starsCategory=ALL".
fscache.INFO [2025-08-15 01:05:58.914][private$cache$loadContents] Load 1 contents, from C:\Users\biocbuild\AppData\Local/R/cache/R/sched.
fscache.DEBUG[2025-08-15 01:05:58.935][FUN] Found encoding ISO-8859-1 for file C:\Users\biocbuild\AppData\Local/R/cache/R/sched/d853ab8a48594978d76c30b86726648a.content.
sched.DEBUG[2025-08-15 01:05:58.937][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-08-15 01:05:58.941][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-15 01:05:58.943][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-15 01:05:58.945][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-15 01:05:58.955][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-15 01:05:58.957][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-15 01:05:58.959][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-15 01:05:58.961][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2025-08-15 01:05:58.974][biodb::testThat]
biodb.INFO [2025-08-15 01:05:58.977][biodb::testThat] Running test function  test_chebi_convInchiToChebi  (" convInchiToChebi() works. ").
biodb.INFO [2025-08-15 01:05:58.979][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-08-15 01:05:58.981][biodb::testThat]
sched.DEBUG[2025-08-15 01:05:58.986][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=InChI=1S/C15H24/c1-9(2)11-7-8-15(4)12-6-5-10(3)14(15)13(11)12/h5,9,11-14H,6-8H2,1-4H3/t11?,12?,13?,14?,15-/m0/s1&searchCategory=INCHI/INCHI KEY&maximumResults=10&starsCategory=ALL".
fscache.INFO [2025-08-15 01:05:58.990][private$cache$loadContents] Load 1 contents, from C:\Users\biocbuild\AppData\Local/R/cache/R/sched.
fscache.DEBUG[2025-08-15 01:05:59.012][FUN] Found encoding ISO-8859-1 for file C:\Users\biocbuild\AppData\Local/R/cache/R/sched/aa56e28005d49da17591454624aabcd2.content.
sched.DEBUG[2025-08-15 01:05:59.014][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-08-15 01:05:59.016][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-15 01:05:59.017][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-15 01:05:59.019][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-15 01:05:59.026][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-15 01:05:59.028][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-15 01:05:59.030][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-15 01:05:59.032][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-08-15 01:05:59.039][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=VLXDPFLIRFYIME-MWHZVNNOSA-N&searchCategory=INCHI/INCHI KEY&maximumResults=10&starsCategory=ALL".
fscache.INFO [2025-08-15 01:05:59.044][private$cache$loadContents] Load 1 contents, from C:\Users\biocbuild\AppData\Local/R/cache/R/sched.
fscache.DEBUG[2025-08-15 01:05:59.050][FUN] Found encoding ISO-8859-1 for file C:\Users\biocbuild\AppData\Local/R/cache/R/sched/c62078a064e3122e21e26c3428179396.content.
sched.DEBUG[2025-08-15 01:05:59.052][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-08-15 01:05:59.055][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-15 01:05:59.057][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-15 01:05:59.058][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-15 01:05:59.070][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-15 01:05:59.072][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-15 01:05:59.074][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-15 01:05:59.076][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2025-08-15 01:05:59.089][biodb$terminate] Closing BiodbMain instance...
biodb.INFO [2025-08-15 01:05:59.092][self$deleteConn] Connector "chebi" deleted.
biodb.DEBUG[2025-08-15 01:05:59.094][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2025-08-15 01:05:59.096][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-15 01:05:59.098][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-15 01:05:59.100][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-15 01:05:59.102][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-15 01:05:59.104][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2025-08-15 01:05:59.106][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2025-08-15 01:05:59.115][biodb::testContext]
biodb.INFO [2025-08-15 01:05:59.117][biodb::testContext] ********************************************************************************
biodb.INFO [2025-08-15 01:05:59.119][biodb::testContext] Test context - Test web services
biodb.INFO [2025-08-15 01:05:59.121][biodb::testContext] ********************************************************************************
biodb.INFO [2025-08-15 01:05:59.123][biodb::testContext]
biodb.INFO [2025-08-15 01:05:59.128][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.17.1.
biodb.DEBUG[2025-08-15 01:05:59.132][self$loadDefinitions] Load definitions from file "F:/biocbuild/bbs-3.22-bioc/R/library/biodb/definitions.yml".
biodb.DEBUG[2025-08-15 01:05:59.142][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-08-15 01:05:59.144][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2025-08-15 01:05:59.146][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2025-08-15 01:05:59.148][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-15 01:05:59.150][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-15 01:05:59.152][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-15 01:05:59.154][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2025-08-15 01:05:59.156][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2025-08-15 01:05:59.158][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-15 01:05:59.160][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-15 01:05:59.161][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-15 01:05:59.163][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2025-08-15 01:05:59.165][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2025-08-15 01:05:59.167][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-15 01:05:59.169][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-15 01:05:59.171][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-15 01:05:59.173][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2025-08-15 01:05:59.175][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2025-08-15 01:05:59.177][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2025-08-15 01:05:59.179][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-15 01:05:59.181][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-15 01:05:59.183][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-15 01:05:59.185][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2025-08-15 01:05:59.187][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2025-08-15 01:05:59.189][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2025-08-15 01:05:59.191][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-15 01:05:59.193][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-15 01:05:59.195][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-15 01:05:59.197][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2025-08-15 01:05:59.199][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2025-08-15 01:05:59.201][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-15 01:05:59.203][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-15 01:05:59.205][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-15 01:05:59.207][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2025-08-15 01:05:59.209][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2025-08-15 01:05:59.211][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2025-08-15 01:05:59.213][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-15 01:05:59.215][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-15 01:05:59.217][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-15 01:05:59.219][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2025-08-15 01:05:59.221][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2025-08-15 01:05:59.223][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-15 01:05:59.225][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-15 01:05:59.227][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-15 01:05:59.229][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2025-08-15 01:05:59.231][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2025-08-15 01:05:59.234][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2025-08-15 01:05:59.235][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-15 01:05:59.237][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-15 01:05:59.239][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-15 01:05:59.241][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2025-08-15 01:05:59.244][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2025-08-15 01:05:59.246][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2025-08-15 01:05:59.248][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2025-08-15 01:05:59.250][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2025-08-15 01:05:59.252][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2025-08-15 01:05:59.254][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-15 01:05:59.256][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-15 01:05:59.258][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-15 01:05:59.260][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2025-08-15 01:05:59.263][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2025-08-15 01:05:59.265][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-15 01:05:59.267][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-15 01:05:59.269][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-15 01:05:59.271][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2025-08-15 01:05:59.273][self$set] Set key entries.sep to "|".
biodb.DEBUG[2025-08-15 01:05:59.275][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-15 01:05:59.277][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-15 01:05:59.279][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-15 01:05:59.281][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2025-08-15 01:05:59.283][self$set] Set key offline to FALSE.
biodb.DEBUG[2025-08-15 01:05:59.285][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-15 01:05:59.287][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-15 01:05:59.289][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-15 01:05:59.291][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2025-08-15 01:05:59.293][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2025-08-15 01:05:59.296][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2025-08-15 01:05:59.298][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-15 01:05:59.299][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-15 01:05:59.301][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-15 01:05:59.304][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2025-08-15 01:05:59.306][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2025-08-15 01:05:59.312][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2025-08-15 01:05:59.314][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-15 01:05:59.316][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-15 01:05:59.318][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-15 01:05:59.321][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2025-08-15 01:05:59.323][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2025-08-15 01:05:59.325][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2025-08-15 01:05:59.327][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-15 01:05:59.329][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-15 01:05:59.331][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-15 01:05:59.334][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2025-08-15 01:05:59.337][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-08-15 01:05:59.340][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2025-08-15 01:05:59.342][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-08-15 01:05:59.344][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-08-15 01:05:59.346][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-08-15 01:05:59.348][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-08-15 01:05:59.351][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-08-15 01:05:59.353][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-08-15 01:05:59.355][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2025-08-15 01:05:59.357][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-08-15 01:05:59.359][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-08-15 01:05:59.361][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2025-08-15 01:05:59.364][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-08-15 01:05:59.366][self$setPropertyValue] Setting property "parsing.expr" to "<NULL>".
biodb.DEBUG[2025-08-15 01:05:59.368][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-08-15 01:05:59.370][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-08-15 01:05:59.370][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-08-15 01:05:59.370][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-08-15 01:05:59.370][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2025-08-15 01:05:59.370][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2025-08-15 01:05:59.372][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-08-15 01:05:59.374][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-08-15 01:05:59.376][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-08-15 01:05:59.379][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-08-15 01:05:59.381][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-08-15 01:05:59.383][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-08-15 01:05:59.385][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-08-15 01:05:59.387][self$setPropertyValue] Setting property "urls" to "<NULL>".
biodb.DEBUG[2025-08-15 01:05:59.389][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-08-15 01:05:59.391][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-08-15 01:05:59.393][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-08-15 01:05:59.395][self$setPropertyValue] Setting property "xml.ns" to "<NULL>".
biodb.DEBUG[2025-08-15 01:05:59.398][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2025-08-15 01:05:59.402][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-08-15 01:05:59.404][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2025-08-15 01:05:59.406][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-08-15 01:05:59.408][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-08-15 01:05:59.411][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-08-15 01:05:59.413][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-08-15 01:05:59.415][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-08-15 01:05:59.417][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-08-15 01:05:59.419][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2025-08-15 01:05:59.421][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-08-15 01:05:59.424][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-08-15 01:05:59.434][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2025-08-15 01:05:59.436][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-08-15 01:05:59.439][self$setPropertyValue] Setting property "parsing.expr" to "<NULL>".
biodb.DEBUG[2025-08-15 01:05:59.441][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-08-15 01:05:59.443][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-08-15 01:05:59.443][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-08-15 01:05:59.443][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-08-15 01:05:59.443][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2025-08-15 01:05:59.443][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2025-08-15 01:05:59.445][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-08-15 01:05:59.447][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-08-15 01:05:59.449][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-08-15 01:05:59.451][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-08-15 01:05:59.453][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-08-15 01:05:59.454][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-08-15 01:05:59.456][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-08-15 01:05:59.458][self$setPropertyValue] Setting property "urls" to "<NULL>".
biodb.DEBUG[2025-08-15 01:05:59.460][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-08-15 01:05:59.462][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-08-15 01:05:59.464][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-08-15 01:05:59.466][self$setPropertyValue] Setting property "xml.ns" to "<NULL>".
biodb.DEBUG[2025-08-15 01:05:59.468][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2025-08-15 01:05:59.471][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-08-15 01:05:59.473][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2025-08-15 01:05:59.475][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-08-15 01:05:59.477][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-08-15 01:05:59.479][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-08-15 01:05:59.481][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-08-15 01:05:59.483][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-08-15 01:05:59.485][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-08-15 01:05:59.487][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2025-08-15 01:05:59.489][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-08-15 01:05:59.491][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2025-08-15 01:05:59.493][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2025-08-15 01:05:59.495][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-08-15 01:05:59.497][self$setPropertyValue] Setting property "parsing.expr" to "<NULL>".
biodb.DEBUG[2025-08-15 01:05:59.499][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-08-15 01:05:59.501][self$setPropertyValue] Setting property "searchable.fields" to "<NULL>".
biodb.DEBUG[2025-08-15 01:05:59.503][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-08-15 01:05:59.505][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-08-15 01:05:59.506][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-08-15 01:05:59.508][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-08-15 01:05:59.510][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-08-15 01:05:59.512][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-08-15 01:05:59.514][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-08-15 01:05:59.516][self$setPropertyValue] Setting property "urls" to "<NULL>".
biodb.DEBUG[2025-08-15 01:05:59.518][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-08-15 01:05:59.519][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-08-15 01:05:59.521][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-08-15 01:05:59.523][self$setPropertyValue] Setting property "xml.ns" to "<NULL>".
biodb.DEBUG[2025-08-15 01:05:59.526][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2025-08-15 01:05:59.529][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-08-15 01:05:59.531][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2025-08-15 01:05:59.533][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-08-15 01:05:59.535][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-08-15 01:05:59.537][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-08-15 01:05:59.538][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-08-15 01:05:59.540][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-08-15 01:05:59.542][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-08-15 01:05:59.544][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2025-08-15 01:05:59.546][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-08-15 01:05:59.549][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2025-08-15 01:05:59.550][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2025-08-15 01:05:59.553][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-08-15 01:05:59.555][self$setPropertyValue] Setting property "parsing.expr" to "<NULL>".
biodb.DEBUG[2025-08-15 01:05:59.556][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-08-15 01:05:59.558][self$setPropertyValue] Setting property "searchable.fields" to "<NULL>".
biodb.DEBUG[2025-08-15 01:05:59.560][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-08-15 01:05:59.562][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-08-15 01:05:59.564][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-08-15 01:05:59.566][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-08-15 01:05:59.568][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-08-15 01:05:59.570][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-08-15 01:05:59.572][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-08-15 01:05:59.574][self$setPropertyValue] Setting property "urls" to "<NULL>".
biodb.DEBUG[2025-08-15 01:05:59.575][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-08-15 01:05:59.577][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-08-15 01:05:59.579][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-08-15 01:05:59.581][self$setPropertyValue] Setting property "xml.ns" to "<NULL>".
biodb.DEBUG[2025-08-15 01:05:59.584][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-08-15 01:05:59.585][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2025-08-15 01:05:59.587][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-15 01:05:59.589][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-15 01:05:59.591][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-15 01:05:59.592][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-15 01:05:59.594][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-15 01:05:59.596][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-15 01:05:59.598][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-15 01:05:59.600][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-15 01:05:59.602][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-15 01:05:59.603][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-15 01:05:59.605][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-15 01:05:59.607][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-15 01:05:59.609][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-15 01:05:59.611][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-15 01:05:59.613][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-15 01:05:59.615][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-15 01:05:59.617][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-15 01:05:59.618][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-15 01:05:59.620][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-15 01:05:59.622][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-15 01:05:59.624][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-15 01:05:59.626][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-15 01:05:59.627][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-15 01:05:59.629][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-15 01:05:59.631][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-15 01:05:59.633][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-15 01:05:59.635][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-15 01:05:59.636][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-15 01:05:59.638][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-15 01:05:59.640][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-15 01:05:59.642][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-15 01:05:59.644][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-15 01:05:59.646][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-15 01:05:59.648][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-15 01:05:59.649][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-15 01:05:59.651][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-15 01:05:59.653][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-15 01:05:59.655][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-15 01:05:59.657][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-15 01:05:59.658][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-15 01:05:59.660][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-15 01:05:59.662][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-15 01:05:59.664][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-15 01:05:59.666][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-15 01:05:59.668][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-15 01:05:59.669][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-15 01:05:59.671][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-15 01:05:59.673][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-15 01:05:59.675][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-15 01:05:59.677][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-15 01:05:59.679][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-15 01:05:59.681][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-15 01:05:59.683][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-15 01:05:59.684][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-15 01:05:59.686][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-15 01:05:59.688][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-15 01:05:59.689][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-15 01:05:59.690][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-15 01:05:59.691][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-15 01:05:59.693][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-15 01:05:59.694][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-15 01:05:59.695][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-15 01:05:59.697][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-15 01:05:59.698][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-15 01:05:59.699][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-15 01:05:59.700][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-15 01:05:59.701][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-15 01:05:59.702][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-15 01:05:59.704][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-15 01:05:59.705][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-15 01:05:59.706][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-15 01:05:59.707][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-15 01:05:59.708][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-15 01:05:59.709][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-15 01:05:59.710][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-15 01:05:59.711][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-15 01:05:59.713][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-15 01:05:59.714][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-15 01:05:59.715][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-15 01:05:59.717][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-15 01:05:59.718][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-15 01:05:59.720][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2025-08-15 01:05:59.722][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2025-08-15 01:05:59.724][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2025-08-15 01:05:59.726][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2025-08-15 01:05:59.728][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2025-08-15 01:05:59.730][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2025-08-15 01:05:59.733][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2025-08-15 01:05:59.736][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2025-08-15 01:05:59.738][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2025-08-15 01:05:59.741][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2025-08-15 01:05:59.743][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2025-08-15 01:05:59.745][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2025-08-15 01:05:59.748][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2025-08-15 01:05:59.750][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2025-08-15 01:05:59.753][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2025-08-15 01:05:59.756][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2025-08-15 01:05:59.759][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2025-08-15 01:05:59.762][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2025-08-15 01:05:59.765][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2025-08-15 01:05:59.768][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2025-08-15 01:05:59.771][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2025-08-15 01:05:59.773][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2025-08-15 01:05:59.776][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2025-08-15 01:05:59.779][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2025-08-15 01:05:59.782][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2025-08-15 01:05:59.785][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2025-08-15 01:05:59.788][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2025-08-15 01:05:59.791][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2025-08-15 01:05:59.794][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2025-08-15 01:05:59.797][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2025-08-15 01:05:59.800][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2025-08-15 01:05:59.803][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2025-08-15 01:05:59.805][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2025-08-15 01:05:59.808][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2025-08-15 01:05:59.811][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2025-08-15 01:05:59.814][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2025-08-15 01:05:59.817][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2025-08-15 01:05:59.820][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2025-08-15 01:05:59.823][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2025-08-15 01:05:59.826][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2025-08-15 01:05:59.829][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2025-08-15 01:05:59.832][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2025-08-15 01:05:59.835][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2025-08-15 01:05:59.838][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2025-08-15 01:05:59.841][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2025-08-15 01:05:59.843][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2025-08-15 01:05:59.846][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2025-08-15 01:05:59.849][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2025-08-15 01:05:59.852][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2025-08-15 01:05:59.855][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2025-08-15 01:05:59.857][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2025-08-15 01:05:59.860][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2025-08-15 01:05:59.863][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2025-08-15 01:05:59.866][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2025-08-15 01:05:59.868][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2025-08-15 01:05:59.871][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2025-08-15 01:05:59.874][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2025-08-15 01:05:59.877][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2025-08-15 01:05:59.880][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2025-08-15 01:05:59.883][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2025-08-15 01:05:59.885][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2025-08-15 01:05:59.888][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2025-08-15 01:05:59.890][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2025-08-15 01:05:59.893][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2025-08-15 01:05:59.895][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2025-08-15 01:05:59.897][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2025-08-15 01:05:59.900][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2025-08-15 01:05:59.902][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2025-08-15 01:05:59.905][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2025-08-15 01:05:59.907][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2025-08-15 01:05:59.909][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2025-08-15 01:05:59.912][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2025-08-15 01:05:59.914][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2025-08-15 01:05:59.916][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2025-08-15 01:05:59.919][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2025-08-15 01:05:59.921][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2025-08-15 01:05:59.923][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2025-08-15 01:05:59.926][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2025-08-15 01:05:59.928][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2025-08-15 01:05:59.930][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2025-08-15 01:05:59.933][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2025-08-15 01:05:59.935][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2025-08-15 01:05:59.937][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2025-08-15 01:05:59.940][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2025-08-15 01:05:59.943][initialize] This is biodb version 1.17.1.
biodb.DEBUG[2025-08-15 01:05:59.945][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-08-15 01:05:59.946][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2025-08-15 01:05:59.948][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-15 01:05:59.949][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2025-08-15 01:05:59.951][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-15 01:05:59.960][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-15 01:05:59.962][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-15 01:05:59.963][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-15 01:05:59.965][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-15 01:05:59.966][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-15 01:05:59.968][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-15 01:05:59.969][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-15 01:05:59.971][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-15 01:05:59.972][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-15 01:05:59.974][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-15 01:05:59.975][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-15 01:05:59.977][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-15 01:05:59.978][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-15 01:05:59.980][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-15 01:05:59.982][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-15 01:05:59.983][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-15 01:05:59.985][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-15 01:05:59.986][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-15 01:05:59.988][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-15 01:05:59.990][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-15 01:05:59.991][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-15 01:05:59.993][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-15 01:05:59.994][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-15 01:05:59.996][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-15 01:05:59.998][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-15 01:05:59.999][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-15 01:06:00.001][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-15 01:06:00.003][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-15 01:06:00.004][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-15 01:06:00.006][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-15 01:06:00.007][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-15 01:06:00.009][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-15 01:06:00.011][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-15 01:06:00.012][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-15 01:06:00.014][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-15 01:06:00.016][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-15 01:06:00.017][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-15 01:06:00.019][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-15 01:06:00.021][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-15 01:06:00.022][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-15 01:06:00.024][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-15 01:06:00.026][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-15 01:06:00.027][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-15 01:06:00.029][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-15 01:06:00.031][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-15 01:06:00.032][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-15 01:06:00.034][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-15 01:06:00.036][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-15 01:06:00.037][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-15 01:06:00.039][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-15 01:06:00.041][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-15 01:06:00.042][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-15 01:06:00.044][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-15 01:06:00.046][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-15 01:06:00.047][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-15 01:06:00.049][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-15 01:06:00.051][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-15 01:06:00.052][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-15 01:06:00.054][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-15 01:06:00.055][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-15 01:06:00.057][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-15 01:06:00.059][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-15 01:06:00.061][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-15 01:06:00.063][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-15 01:06:00.065][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-15 01:06:00.067][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-15 01:06:00.068][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-15 01:06:00.070][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-15 01:06:00.072][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-15 01:06:00.073][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-15 01:06:00.075][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-15 01:06:00.077][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-15 01:06:00.079][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-15 01:06:00.080][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-15 01:06:00.082][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-15 01:06:00.084][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-15 01:06:00.085][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-15 01:06:00.087][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-15 01:06:00.088][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-15 01:06:00.090][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-15 01:06:00.092][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-15 01:06:00.093][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-15 01:06:00.095][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-15 01:06:00.097][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-15 01:06:00.099][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-15 01:06:00.100][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-15 01:06:00.102][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-15 01:06:00.104][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-15 01:06:00.105][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-15 01:06:00.107][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-15 01:06:00.109][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-15 01:06:00.110][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-15 01:06:00.112][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-15 01:06:00.114][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-15 01:06:00.116][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-15 01:06:00.117][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-15 01:06:00.119][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-15 01:06:00.121][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-15 01:06:00.123][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-15 01:06:00.125][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-15 01:06:00.127][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-15 01:06:00.129][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-15 01:06:00.131][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-15 01:06:00.133][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-15 01:06:00.134][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-15 01:06:00.136][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-15 01:06:00.138][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-15 01:06:00.139][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-15 01:06:00.141][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-15 01:06:00.143][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-15 01:06:00.145][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-15 01:06:00.147][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-15 01:06:00.151][biodb$loadDefinitions] Load definitions from file "F:/biocbuild/bbs-3.22-bioc/R/library/biodbChebi/definitions.yml".
biodb.DEBUG[2025-08-15 01:06:00.154][self$getDbsInfo()$define] Define connector chebi.
biodb.DEBUG[2025-08-15 01:06:00.158][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-08-15 01:06:00.160][self$setPropertyValue] Setting property "description" to "NA".
biodb.DEBUG[2025-08-15 01:06:00.162][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-08-15 01:06:00.164][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-08-15 01:06:00.166][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-08-15 01:06:00.168][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-08-15 01:06:00.170][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2025-08-15 01:06:00.172][self$setPropertyValue] Setting property "entry.content.encoding" to "UTF-8".
biodb.DEBUG[2025-08-15 01:06:00.174][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2025-08-15 01:06:00.176][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-08-15 01:06:00.178][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-08-15 01:06:00.180][self$setPropertyValue] Setting property "name" to "ChEBI".
biodb.DEBUG[2025-08-15 01:06:00.182][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-08-15 01:06:00.184][self$setPropertyValue] Setting property "parsing.expr" to "substring-after(//chebi:return/chebi:chebiId,'CHEBI:')".
biodb.DEBUG[2025-08-15 01:06:00.184][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:charge".
biodb.DEBUG[2025-08-15 01:06:00.184][self$setPropertyValue] Setting property "parsing.expr" to "c("//chebi:Formulae/chebi:source[text()='ChEBI']/../chebi:data", "(//chebi:Formulae/chebi:data)[1]")".
biodb.DEBUG[2025-08-15 01:06:00.184][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:inchi".
biodb.DEBUG[2025-08-15 01:06:00.184][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:inchiKey".
biodb.DEBUG[2025-08-15 01:06:00.184][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:DatabaseLinks/chebi:type[text()='KEGG COMPOUND accession']/../chebi:data".
biodb.DEBUG[2025-08-15 01:06:00.184][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:mass".
biodb.DEBUG[2025-08-15 01:06:00.184][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:monoisotopicMass".
biodb.DEBUG[2025-08-15 01:06:00.184][self$setPropertyValue] Setting property "parsing.expr" to "c("//chebi:chebiAsciiName", "//chebi:Synonyms/chebi:data")".
biodb.DEBUG[2025-08-15 01:06:00.184][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:entityStar".
biodb.DEBUG[2025-08-15 01:06:00.184][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:smiles".
biodb.DEBUG[2025-08-15 01:06:00.187][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2025-08-15 01:06:00.189][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-08-15 01:06:00.189][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-08-15 01:06:00.189][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-08-15 01:06:00.190][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2025-08-15 01:06:00.192][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-08-15 01:06:00.194][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-08-15 01:06:00.196][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-08-15 01:06:00.198][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-08-15 01:06:00.200][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-08-15 01:06:00.202][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-08-15 01:06:00.203][self$setPropertyValue] Setting property "urls" to "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-08-15 01:06:00.203][self$setPropertyValue] Setting property "urls" to "https://www.ebi.ac.uk/webservices/chebi/2.0/".
biodb.DEBUG[2025-08-15 01:06:00.205][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-08-15 01:06:00.207][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-08-15 01:06:00.209][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2025-08-15 01:06:00.210][self$setPropertyValue] Setting property "xml.ns" to "https://www.ebi.ac.uk/webservices/chebi".
biodb.DEBUG[2025-08-15 01:06:00.210][self$setPropertyValue] Setting property "xml.ns" to "http://www.w3.org/2001/XMLSchema".
biodb.DEBUG[2025-08-15 01:06:00.213][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2025-08-15 01:06:00.216][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2025-08-15 01:06:00.218][self$getEntryFields()$define] Define field n_stars.
biodb.DEBUG[2025-08-15 01:06:00.221][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2025-08-15 01:06:00.224][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2025-08-15 01:06:00.226][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2025-08-15 01:06:00.232][super$initialize] Initialize connector chebi.
biodb.DEBUG[2025-08-15 01:06:00.258][biodb$getFactory()$createConn] Creating new connector chebi for database class chebi .
biodb.INFO [2025-08-15 01:06:00.262][biodb::testThat]
biodb.INFO [2025-08-15 01:06:00.264][biodb::testThat] Running test function  test.chebi.wsGetLiteEntity  (" Web service getLiteEntity works fine. ").
biodb.INFO [2025-08-15 01:06:00.266][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-08-15 01:06:00.268][biodb::testThat]
sched.DEBUG[2025-08-15 01:06:00.273][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/webservice?wsdl".
fscache.INFO [2025-08-15 01:06:00.278][private$cache$loadContents] Load 1 contents, from C:\Users\biocbuild\AppData\Local/R/cache/R/sched.
fscache.DEBUG[2025-08-15 01:06:00.285][FUN] Found encoding ISO-8859-1 for file C:\Users\biocbuild\AppData\Local/R/cache/R/sched/a2ed8f44d213d85be0d7e9a0448c78ad.content.
sched.DEBUG[2025-08-15 01:06:00.288][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
sched.DEBUG[2025-08-15 01:06:00.295][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=2571&searchCategory=CHEBI ID&maximumResults=10&starsCategory=ALL".
fscache.INFO [2025-08-15 01:06:00.299][private$cache$loadContents] Load 1 contents, from C:\Users\biocbuild\AppData\Local/R/cache/R/sched.
fscache.DEBUG[2025-08-15 01:06:00.353][FUN] Found encoding ISO-8859-1 for file C:\Users\biocbuild\AppData\Local/R/cache/R/sched/45b8073beb9f4a9f751edf98e80ca9dd.content.
sched.DEBUG[2025-08-15 01:06:00.355][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.INFO [2025-08-15 01:06:00.371][biodb$terminate] Closing BiodbMain instance...
biodb.INFO [2025-08-15 01:06:00.373][self$deleteConn] Connector "chebi" deleted.
biodb.DEBUG[2025-08-15 01:06:00.375][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2025-08-15 01:06:00.377][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-15 01:06:00.379][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-15 01:06:00.380][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-15 01:06:00.382][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-15 01:06:00.384][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2025-08-15 01:06:00.386][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2025-08-15 01:06:00.394][biodb::testContext]
biodb.INFO [2025-08-15 01:06:00.396][biodb::testContext] ********************************************************************************
biodb.INFO [2025-08-15 01:06:00.398][biodb::testContext] Test context - Non regression tests
biodb.INFO [2025-08-15 01:06:00.400][biodb::testContext] ********************************************************************************
biodb.INFO [2025-08-15 01:06:00.402][biodb::testContext]
biodb.INFO [2025-08-15 01:06:00.405][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.17.1.
biodb.DEBUG[2025-08-15 01:06:00.408][self$loadDefinitions] Load definitions from file "F:/biocbuild/bbs-3.22-bioc/R/library/biodb/definitions.yml".
biodb.DEBUG[2025-08-15 01:06:00.414][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-08-15 01:06:00.416][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2025-08-15 01:06:00.417][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2025-08-15 01:06:00.418][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-15 01:06:00.420][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-15 01:06:00.421][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-15 01:06:00.422][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2025-08-15 01:06:00.424][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2025-08-15 01:06:00.425][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-15 01:06:00.426][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-15 01:06:00.427][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-15 01:06:00.429][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2025-08-15 01:06:00.430][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2025-08-15 01:06:00.431][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-15 01:06:00.432][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-15 01:06:00.434][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-15 01:06:00.435][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2025-08-15 01:06:00.436][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2025-08-15 01:06:00.437][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2025-08-15 01:06:00.439][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-15 01:06:00.440][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-15 01:06:00.441][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-15 01:06:00.442][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2025-08-15 01:06:00.444][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2025-08-15 01:06:00.445][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2025-08-15 01:06:00.446][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-15 01:06:00.448][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-15 01:06:00.449][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-15 01:06:00.450][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2025-08-15 01:06:00.452][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2025-08-15 01:06:00.453][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-15 01:06:00.454][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-15 01:06:00.455][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-15 01:06:00.457][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2025-08-15 01:06:00.458][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2025-08-15 01:06:00.459][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2025-08-15 01:06:00.461][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-15 01:06:00.462][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-15 01:06:00.464][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-15 01:06:00.465][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2025-08-15 01:06:00.466][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2025-08-15 01:06:00.468][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-15 01:06:00.469][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-15 01:06:00.470][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-15 01:06:00.471][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2025-08-15 01:06:00.473][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2025-08-15 01:06:00.474][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2025-08-15 01:06:00.475][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-15 01:06:00.476][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-15 01:06:00.478][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-15 01:06:00.479][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2025-08-15 01:06:00.480][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2025-08-15 01:06:00.482][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2025-08-15 01:06:00.483][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2025-08-15 01:06:00.485][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2025-08-15 01:06:00.486][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2025-08-15 01:06:00.487][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-15 01:06:00.488][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-15 01:06:00.490][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-15 01:06:00.491][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2025-08-15 01:06:00.493][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2025-08-15 01:06:00.494][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-15 01:06:00.495][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-15 01:06:00.496][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-15 01:06:00.498][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2025-08-15 01:06:00.499][self$set] Set key entries.sep to "|".
biodb.DEBUG[2025-08-15 01:06:00.500][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-15 01:06:00.502][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-15 01:06:00.503][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-15 01:06:00.504][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2025-08-15 01:06:00.506][self$set] Set key offline to FALSE.
biodb.DEBUG[2025-08-15 01:06:00.507][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-15 01:06:00.508][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-15 01:06:00.509][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-15 01:06:00.511][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2025-08-15 01:06:00.512][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2025-08-15 01:06:00.513][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2025-08-15 01:06:00.514][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-15 01:06:00.516][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-15 01:06:00.517][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-15 01:06:00.518][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2025-08-15 01:06:00.519][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2025-08-15 01:06:00.523][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2025-08-15 01:06:00.524][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-15 01:06:00.526][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-15 01:06:00.527][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-15 01:06:00.528][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2025-08-15 01:06:00.529][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2025-08-15 01:06:00.537][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2025-08-15 01:06:00.539][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-15 01:06:00.540][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-15 01:06:00.542][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-15 01:06:00.543][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2025-08-15 01:06:00.545][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-08-15 01:06:00.547][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2025-08-15 01:06:00.548][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-08-15 01:06:00.549][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-08-15 01:06:00.551][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-08-15 01:06:00.552][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-08-15 01:06:00.553][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-08-15 01:06:00.554][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-08-15 01:06:00.556][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2025-08-15 01:06:00.557][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-08-15 01:06:00.558][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-08-15 01:06:00.560][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2025-08-15 01:06:00.562][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-08-15 01:06:00.564][self$setPropertyValue] Setting property "parsing.expr" to "<NULL>".
biodb.DEBUG[2025-08-15 01:06:00.566][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-08-15 01:06:00.568][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-08-15 01:06:00.568][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-08-15 01:06:00.568][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-08-15 01:06:00.568][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2025-08-15 01:06:00.568][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2025-08-15 01:06:00.570][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-08-15 01:06:00.572][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-08-15 01:06:00.574][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-08-15 01:06:00.576][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-08-15 01:06:00.578][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-08-15 01:06:00.580][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-08-15 01:06:00.582][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-08-15 01:06:00.584][self$setPropertyValue] Setting property "urls" to "<NULL>".
biodb.DEBUG[2025-08-15 01:06:00.586][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-08-15 01:06:00.588][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-08-15 01:06:00.590][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-08-15 01:06:00.592][self$setPropertyValue] Setting property "xml.ns" to "<NULL>".
biodb.DEBUG[2025-08-15 01:06:00.594][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2025-08-15 01:06:00.598][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-08-15 01:06:00.600][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2025-08-15 01:06:00.602][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-08-15 01:06:00.604][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-08-15 01:06:00.606][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-08-15 01:06:00.608][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-08-15 01:06:00.611][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-08-15 01:06:00.613][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-08-15 01:06:00.615][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2025-08-15 01:06:00.617][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-08-15 01:06:00.619][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-08-15 01:06:00.621][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2025-08-15 01:06:00.623][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-08-15 01:06:00.625][self$setPropertyValue] Setting property "parsing.expr" to "<NULL>".
biodb.DEBUG[2025-08-15 01:06:00.628][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-08-15 01:06:00.630][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-08-15 01:06:00.630][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-08-15 01:06:00.630][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-08-15 01:06:00.630][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2025-08-15 01:06:00.630][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2025-08-15 01:06:00.632][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-08-15 01:06:00.634][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-08-15 01:06:00.636][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-08-15 01:06:00.638][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-08-15 01:06:00.640][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-08-15 01:06:00.642][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-08-15 01:06:00.644][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-08-15 01:06:00.646][self$setPropertyValue] Setting property "urls" to "<NULL>".
biodb.DEBUG[2025-08-15 01:06:00.648][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-08-15 01:06:00.650][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-08-15 01:06:00.652][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-08-15 01:06:00.654][self$setPropertyValue] Setting property "xml.ns" to "<NULL>".
biodb.DEBUG[2025-08-15 01:06:00.657][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2025-08-15 01:06:00.660][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-08-15 01:06:00.662][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2025-08-15 01:06:00.664][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-08-15 01:06:00.667][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-08-15 01:06:00.669][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-08-15 01:06:00.671][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-08-15 01:06:00.673][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-08-15 01:06:00.675][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-08-15 01:06:00.677][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2025-08-15 01:06:00.679][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-08-15 01:06:00.681][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2025-08-15 01:06:00.683][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2025-08-15 01:06:00.685][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-08-15 01:06:00.687][self$setPropertyValue] Setting property "parsing.expr" to "<NULL>".
biodb.DEBUG[2025-08-15 01:06:00.689][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-08-15 01:06:00.691][self$setPropertyValue] Setting property "searchable.fields" to "<NULL>".
biodb.DEBUG[2025-08-15 01:06:00.694][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-08-15 01:06:00.696][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-08-15 01:06:00.697][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-08-15 01:06:00.699][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-08-15 01:06:00.701][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-08-15 01:06:00.703][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-08-15 01:06:00.705][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-08-15 01:06:00.707][self$setPropertyValue] Setting property "urls" to "<NULL>".
biodb.DEBUG[2025-08-15 01:06:00.709][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-08-15 01:06:00.711][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-08-15 01:06:00.713][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-08-15 01:06:00.715][self$setPropertyValue] Setting property "xml.ns" to "<NULL>".
biodb.DEBUG[2025-08-15 01:06:00.718][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2025-08-15 01:06:00.721][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-08-15 01:06:00.723][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2025-08-15 01:06:00.725][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-08-15 01:06:00.727][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-08-15 01:06:00.729][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-08-15 01:06:00.732][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-08-15 01:06:00.734][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-08-15 01:06:00.736][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-08-15 01:06:00.738][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2025-08-15 01:06:00.740][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-08-15 01:06:00.742][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2025-08-15 01:06:00.744][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2025-08-15 01:06:00.747][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-08-15 01:06:00.749][self$setPropertyValue] Setting property "parsing.expr" to "<NULL>".
biodb.DEBUG[2025-08-15 01:06:00.751][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-08-15 01:06:00.753][self$setPropertyValue] Setting property "searchable.fields" to "<NULL>".
biodb.DEBUG[2025-08-15 01:06:00.755][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-08-15 01:06:00.757][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-08-15 01:06:00.759][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-08-15 01:06:00.761][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-08-15 01:06:00.763][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-08-15 01:06:00.765][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-08-15 01:06:00.767][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-08-15 01:06:00.769][self$setPropertyValue] Setting property "urls" to "<NULL>".
biodb.DEBUG[2025-08-15 01:06:00.771][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-08-15 01:06:00.773][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-08-15 01:06:00.775][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-08-15 01:06:00.778][self$setPropertyValue] Setting property "xml.ns" to "<NULL>".
biodb.DEBUG[2025-08-15 01:06:00.780][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-08-15 01:06:00.782][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2025-08-15 01:06:00.784][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-15 01:06:00.786][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-15 01:06:00.788][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-15 01:06:00.790][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-15 01:06:00.792][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-15 01:06:00.794][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-15 01:06:00.796][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-15 01:06:00.798][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-15 01:06:00.800][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-15 01:06:00.802][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-15 01:06:00.804][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-15 01:06:00.806][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-15 01:06:00.808][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-15 01:06:00.809][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-15 01:06:00.811][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-15 01:06:00.813][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-15 01:06:00.815][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-15 01:06:00.817][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-15 01:06:00.819][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-15 01:06:00.821][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-15 01:06:00.823][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-15 01:06:00.825][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-15 01:06:00.826][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-15 01:06:00.828][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-15 01:06:00.830][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-15 01:06:00.832][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-15 01:06:00.834][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-15 01:06:00.836][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-15 01:06:00.838][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-15 01:06:00.840][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-15 01:06:00.842][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-15 01:06:00.844][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-15 01:06:00.845][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-15 01:06:00.847][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-15 01:06:00.849][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-15 01:06:00.851][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-15 01:06:00.853][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-15 01:06:00.855][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-15 01:06:00.857][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-15 01:06:00.859][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-15 01:06:00.861][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-15 01:06:00.863][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-15 01:06:00.865][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-15 01:06:00.867][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-15 01:06:00.869][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-15 01:06:00.870][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-15 01:06:00.872][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-15 01:06:00.874][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-15 01:06:00.876][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-15 01:06:00.878][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-15 01:06:00.880][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-15 01:06:00.882][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-15 01:06:00.884][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-15 01:06:00.886][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-15 01:06:00.887][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-15 01:06:00.889][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-15 01:06:00.891][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-15 01:06:00.893][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-15 01:06:00.895][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-15 01:06:00.897][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-15 01:06:00.899][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-15 01:06:00.901][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-15 01:06:00.903][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-15 01:06:00.905][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-15 01:06:00.906][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-15 01:06:00.908][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-15 01:06:00.910][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-15 01:06:00.912][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-15 01:06:00.914][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-15 01:06:00.916][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-15 01:06:00.918][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-15 01:06:00.920][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-15 01:06:00.922][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-15 01:06:00.924][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-15 01:06:00.926][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-15 01:06:00.928][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-15 01:06:00.930][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-15 01:06:00.931][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-15 01:06:00.933][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-15 01:06:00.935][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-15 01:06:00.937][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-15 01:06:00.939][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2025-08-15 01:06:00.942][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2025-08-15 01:06:00.945][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2025-08-15 01:06:00.948][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2025-08-15 01:06:00.950][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2025-08-15 01:06:00.953][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2025-08-15 01:06:00.956][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2025-08-15 01:06:00.959][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2025-08-15 01:06:00.961][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2025-08-15 01:06:00.964][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2025-08-15 01:06:00.966][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2025-08-15 01:06:00.969][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2025-08-15 01:06:00.972][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2025-08-15 01:06:00.974][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2025-08-15 01:06:00.977][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2025-08-15 01:06:00.980][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2025-08-15 01:06:00.982][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2025-08-15 01:06:00.985][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2025-08-15 01:06:00.988][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2025-08-15 01:06:00.991][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2025-08-15 01:06:00.994][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2025-08-15 01:06:00.997][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2025-08-15 01:06:00.999][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2025-08-15 01:06:01.001][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2025-08-15 01:06:01.004][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2025-08-15 01:06:01.006][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2025-08-15 01:06:01.008][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2025-08-15 01:06:01.010][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2025-08-15 01:06:01.012][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2025-08-15 01:06:01.013][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2025-08-15 01:06:01.015][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2025-08-15 01:06:01.017][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2025-08-15 01:06:01.019][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2025-08-15 01:06:01.021][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2025-08-15 01:06:01.023][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2025-08-15 01:06:01.025][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2025-08-15 01:06:01.026][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2025-08-15 01:06:01.028][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2025-08-15 01:06:01.030][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2025-08-15 01:06:01.032][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2025-08-15 01:06:01.034][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2025-08-15 01:06:01.035][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2025-08-15 01:06:01.037][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2025-08-15 01:06:01.039][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2025-08-15 01:06:01.040][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2025-08-15 01:06:01.042][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2025-08-15 01:06:01.044][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2025-08-15 01:06:01.046][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2025-08-15 01:06:01.047][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2025-08-15 01:06:01.049][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2025-08-15 01:06:01.051][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2025-08-15 01:06:01.053][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2025-08-15 01:06:01.054][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2025-08-15 01:06:01.056][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2025-08-15 01:06:01.064][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2025-08-15 01:06:01.066][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2025-08-15 01:06:01.068][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2025-08-15 01:06:01.069][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2025-08-15 01:06:01.071][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2025-08-15 01:06:01.073][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2025-08-15 01:06:01.075][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2025-08-15 01:06:01.076][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2025-08-15 01:06:01.078][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2025-08-15 01:06:01.080][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2025-08-15 01:06:01.082][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2025-08-15 01:06:01.083][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2025-08-15 01:06:01.085][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2025-08-15 01:06:01.087][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2025-08-15 01:06:01.089][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2025-08-15 01:06:01.090][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2025-08-15 01:06:01.092][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2025-08-15 01:06:01.093][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2025-08-15 01:06:01.095][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2025-08-15 01:06:01.097][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2025-08-15 01:06:01.099][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2025-08-15 01:06:01.101][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2025-08-15 01:06:01.103][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2025-08-15 01:06:01.106][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2025-08-15 01:06:01.107][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2025-08-15 01:06:01.110][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2025-08-15 01:06:01.112][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2025-08-15 01:06:01.114][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2025-08-15 01:06:01.117][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2025-08-15 01:06:01.119][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2025-08-15 01:06:01.123][initialize] This is biodb version 1.17.1.
biodb.DEBUG[2025-08-15 01:06:01.125][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-08-15 01:06:01.126][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2025-08-15 01:06:01.128][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-15 01:06:01.129][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2025-08-15 01:06:01.131][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-15 01:06:01.133][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-15 01:06:01.134][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-15 01:06:01.136][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-15 01:06:01.138][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-15 01:06:01.139][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-15 01:06:01.141][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-15 01:06:01.142][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-15 01:06:01.144][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-15 01:06:01.146][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-15 01:06:01.148][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-15 01:06:01.149][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-15 01:06:01.151][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-15 01:06:01.153][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-15 01:06:01.155][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-15 01:06:01.156][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-15 01:06:01.158][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-15 01:06:01.160][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-15 01:06:01.162][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-15 01:06:01.163][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-15 01:06:01.165][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-15 01:06:01.167][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-15 01:06:01.169][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-15 01:06:01.170][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-15 01:06:01.172][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-15 01:06:01.174][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-15 01:06:01.176][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-15 01:06:01.177][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-15 01:06:01.179][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-15 01:06:01.181][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-15 01:06:01.183][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-15 01:06:01.184][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-15 01:06:01.186][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-15 01:06:01.188][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-15 01:06:01.190][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-15 01:06:01.191][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-15 01:06:01.193][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-15 01:06:01.195][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-15 01:06:01.196][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-15 01:06:01.198][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-15 01:06:01.200][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-15 01:06:01.202][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-15 01:06:01.204][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-15 01:06:01.205][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-15 01:06:01.207][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-15 01:06:01.209][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-15 01:06:01.211][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-15 01:06:01.213][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-15 01:06:01.214][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-15 01:06:01.216][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-15 01:06:01.218][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-15 01:06:01.220][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-15 01:06:01.221][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-15 01:06:01.223][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-15 01:06:01.225][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-15 01:06:01.227][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-15 01:06:01.228][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-15 01:06:01.230][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-15 01:06:01.232][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-15 01:06:01.234][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-15 01:06:01.236][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-15 01:06:01.238][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-15 01:06:01.240][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-15 01:06:01.242][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-15 01:06:01.244][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-15 01:06:01.246][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-15 01:06:01.248][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-15 01:06:01.250][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-15 01:06:01.252][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-15 01:06:01.254][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-15 01:06:01.256][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-15 01:06:01.258][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-15 01:06:01.260][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-15 01:06:01.262][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-15 01:06:01.264][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-15 01:06:01.266][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-15 01:06:01.268][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-15 01:06:01.270][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-15 01:06:01.272][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-15 01:06:01.274][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-15 01:06:01.275][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-15 01:06:01.277][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-15 01:06:01.279][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-15 01:06:01.280][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-15 01:06:01.282][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-15 01:06:01.284][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-15 01:06:01.285][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-15 01:06:01.287][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-15 01:06:01.289][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-15 01:06:01.291][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-15 01:06:01.292][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-15 01:06:01.294][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-15 01:06:01.296][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-15 01:06:01.297][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-15 01:06:01.299][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-15 01:06:01.301][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-15 01:06:01.302][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-15 01:06:01.304][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-15 01:06:01.306][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-15 01:06:01.308][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-15 01:06:01.309][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-15 01:06:01.311][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-15 01:06:01.313][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-15 01:06:01.314][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-15 01:06:01.316][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-15 01:06:01.318][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-15 01:06:01.319][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-08-15 01:06:01.321][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-15 01:06:01.323][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-15 01:06:01.324][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-15 01:06:01.326][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-15 01:06:01.327][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-08-15 01:06:01.329][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-08-15 01:06:01.333][biodb$loadDefinitions] Load definitions from file "F:/biocbuild/bbs-3.22-bioc/R/library/biodbChebi/definitions.yml".
biodb.DEBUG[2025-08-15 01:06:01.336][self$getDbsInfo()$define] Define connector chebi.
biodb.DEBUG[2025-08-15 01:06:01.340][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-08-15 01:06:01.342][self$setPropertyValue] Setting property "description" to "NA".
biodb.DEBUG[2025-08-15 01:06:01.344][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-08-15 01:06:01.345][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-08-15 01:06:01.347][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-08-15 01:06:01.349][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-08-15 01:06:01.351][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2025-08-15 01:06:01.353][self$setPropertyValue] Setting property "entry.content.encoding" to "UTF-8".
biodb.DEBUG[2025-08-15 01:06:01.355][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2025-08-15 01:06:01.357][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-08-15 01:06:01.359][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-08-15 01:06:01.361][self$setPropertyValue] Setting property "name" to "ChEBI".
biodb.DEBUG[2025-08-15 01:06:01.363][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-08-15 01:06:01.365][self$setPropertyValue] Setting property "parsing.expr" to "substring-after(//chebi:return/chebi:chebiId,'CHEBI:')".
biodb.DEBUG[2025-08-15 01:06:01.365][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:charge".
biodb.DEBUG[2025-08-15 01:06:01.365][self$setPropertyValue] Setting property "parsing.expr" to "c("//chebi:Formulae/chebi:source[text()='ChEBI']/../chebi:data", "(//chebi:Formulae/chebi:data)[1]")".
biodb.DEBUG[2025-08-15 01:06:01.365][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:inchi".
biodb.DEBUG[2025-08-15 01:06:01.365][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:inchiKey".
biodb.DEBUG[2025-08-15 01:06:01.365][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:DatabaseLinks/chebi:type[text()='KEGG COMPOUND accession']/../chebi:data".
biodb.DEBUG[2025-08-15 01:06:01.365][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:mass".
biodb.DEBUG[2025-08-15 01:06:01.365][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:monoisotopicMass".
biodb.DEBUG[2025-08-15 01:06:01.365][self$setPropertyValue] Setting property "parsing.expr" to "c("//chebi:chebiAsciiName", "//chebi:Synonyms/chebi:data")".
biodb.DEBUG[2025-08-15 01:06:01.365][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:entityStar".
biodb.DEBUG[2025-08-15 01:06:01.365][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:smiles".
biodb.DEBUG[2025-08-15 01:06:01.367][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2025-08-15 01:06:01.369][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-08-15 01:06:01.369][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-08-15 01:06:01.369][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-08-15 01:06:01.371][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2025-08-15 01:06:01.373][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-08-15 01:06:01.374][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-08-15 01:06:01.376][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-08-15 01:06:01.378][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-08-15 01:06:01.380][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-08-15 01:06:01.382][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-08-15 01:06:01.384][self$setPropertyValue] Setting property "urls" to "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-08-15 01:06:01.384][self$setPropertyValue] Setting property "urls" to "https://www.ebi.ac.uk/webservices/chebi/2.0/".
biodb.DEBUG[2025-08-15 01:06:01.386][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-08-15 01:06:01.387][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-08-15 01:06:01.389][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2025-08-15 01:06:01.391][self$setPropertyValue] Setting property "xml.ns" to "https://www.ebi.ac.uk/webservices/chebi".
biodb.DEBUG[2025-08-15 01:06:01.391][self$setPropertyValue] Setting property "xml.ns" to "http://www.w3.org/2001/XMLSchema".
biodb.DEBUG[2025-08-15 01:06:01.394][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2025-08-15 01:06:01.397][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2025-08-15 01:06:01.399][self$getEntryFields()$define] Define field n_stars.
biodb.DEBUG[2025-08-15 01:06:01.402][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2025-08-15 01:06:01.405][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2025-08-15 01:06:01.408][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2025-08-15 01:06:01.414][super$initialize] Initialize connector chebi.
biodb.DEBUG[2025-08-15 01:06:01.440][biodb$getFactory()$createConn] Creating new connector chebi for database class chebi .
biodb.INFO [2025-08-15 01:06:01.443][biodb::testThat]
biodb.INFO [2025-08-15 01:06:01.445][biodb::testThat] Running test function  test.chebi.encoding.issue.in.xml  (" ChEBI encoding issue in XML is handled. ").
biodb.INFO [2025-08-15 01:06:01.447][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-08-15 01:06:01.449][biodb::testThat]
sched.DEBUG[2025-08-15 01:06:01.454][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/webservice?wsdl".
fscache.INFO [2025-08-15 01:06:01.458][private$cache$loadContents] Load 1 contents, from C:\Users\biocbuild\AppData\Local/R/cache/R/sched.
fscache.DEBUG[2025-08-15 01:06:01.466][FUN] Found encoding ISO-8859-1 for file C:\Users\biocbuild\AppData\Local/R/cache/R/sched/a2ed8f44d213d85be0d7e9a0448c78ad.content.
sched.DEBUG[2025-08-15 01:06:01.468][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
sched.DEBUG[2025-08-15 01:06:01.475][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=2571&searchCategory=CHEBI ID&maximumResults=10&starsCategory=ALL".
fscache.INFO [2025-08-15 01:06:01.480][private$cache$loadContents] Load 1 contents, from C:\Users\biocbuild\AppData\Local/R/cache/R/sched.
fscache.DEBUG[2025-08-15 01:06:01.484][FUN] Found encoding ISO-8859-1 for file C:\Users\biocbuild\AppData\Local/R/cache/R/sched/45b8073beb9f4a9f751edf98e80ca9dd.content.
sched.DEBUG[2025-08-15 01:06:01.486][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-08-15 01:06:01.492][private$loadEntries] Creating entries from ids [1]: "2571".
biodb.DEBUG[2025-08-15 01:06:01.518][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-08-15 01:06:01.520][cch$loadContents] Load 1 contents, from C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-08-15 01:06:01.772][FUN] Found encoding UTF-8 for file C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/2571.xml.
biodb.DEBUG[2025-08-15 01:06:01.775][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-08-15 01:06:01.778][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-08-15 01:06:01.780][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-08-15 01:06:01.783][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-08-15 01:06:01.785][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-15 01:06:01.787][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-15 01:06:01.795][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-08-15 01:06:01.796][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-15 01:06:01.797][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-08-15 01:06:01.798][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-08-15 01:06:01.804][ef$get] Asked field names are: accession.
biodb.TRACE[2025-08-15 01:06:01.806][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-15 01:06:01.808][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:06:01.809][ef$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:06:01.811][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-15 01:06:01.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-15 01:06:01.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:06:01.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:06:01.817][ef$get] Asked field names are: charge.
biodb.TRACE[2025-08-15 01:06:01.818][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-15 01:06:01.820][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:06:01.821][ef$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:06:01.823][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-08-15 01:06:01.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-08-15 01:06:01.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:06:01.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:06:01.829][ef$get] Asked field names are: formula.
biodb.TRACE[2025-08-15 01:06:01.831][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-15 01:06:01.832][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:06:01.833][ef$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:06:01.835][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-08-15 01:06:01.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-08-15 01:06:01.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:06:01.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:06:01.841][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-08-15 01:06:01.843][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-08-15 01:06:01.845][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:06:01.846][ef$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:06:01.849][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-08-15 01:06:01.851][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-08-15 01:06:01.853][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:06:01.855][ef$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:06:01.858][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-15 01:06:01.860][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-15 01:06:01.862][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:06:01.872][ef$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:06:01.876][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-08-15 01:06:01.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-08-15 01:06:01.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:06:01.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:06:01.883][ef$get] Asked field names are: mass.
biodb.TRACE[2025-08-15 01:06:01.884][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-15 01:06:01.886][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:06:01.887][ef$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:06:01.889][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-08-15 01:06:01.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-08-15 01:06:01.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:06:01.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:06:01.897][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:06:01.898][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:06:01.900][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:06:01.901][ef$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:06:01.903][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:06:01.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-08-15 01:06:01.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:06:01.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:06:01.908][ef$get] Asked field names are: name.
biodb.TRACE[2025-08-15 01:06:01.909][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-08-15 01:06:01.910][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:06:01.911][ef$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:06:01.914][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-08-15 01:06:01.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-08-15 01:06:01.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:06:01.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:06:01.919][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-15 01:06:01.921][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-15 01:06:01.922][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:06:01.923][ef$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:06:01.925][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-08-15 01:06:01.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-08-15 01:06:01.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:06:01.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:06:01.930][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-08-15 01:06:01.932][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-15 01:06:01.933][ef$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:06:01.934][ef$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:06:01.937][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-08-15 01:06:01.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-08-15 01:06:01.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:06:01.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:06:01.944][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-15 01:06:01.946][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-15 01:06:01.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:06:01.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:06:01.951][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-15 01:06:01.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-15 01:06:01.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:06:01.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:06:01.959][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-15 01:06:01.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-15 01:06:01.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:06:01.964][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:06:01.966][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-08-15 01:06:01.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-08-15 01:06:01.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:06:01.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:06:01.974][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-15 01:06:01.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-15 01:06:01.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:06:01.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:06:01.981][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-15 01:06:01.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-15 01:06:01.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:06:01.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:06:01.988][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-15 01:06:01.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-15 01:06:01.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:06:01.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:06:01.994][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-15 01:06:01.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-15 01:06:01.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:06:02.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:06:02.002][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-15 01:06:02.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-15 01:06:02.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:06:02.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-08-15 01:06:02.009][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-08-15 01:06:02.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-08-15 01:06:02.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-08-15 01:06:02.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-08-15 01:06:02.015][self$createEntryFromContent] Accession numbers: 2571.
biodb.INFO [2025-08-15 01:06:02.023][biodb$terminate] Closing BiodbMain instance...
biodb.INFO [2025-08-15 01:06:02.026][self$deleteConn] Connector "chebi" deleted.
biodb.DEBUG[2025-08-15 01:06:02.028][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2025-08-15 01:06:02.030][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-08-15 01:06:02.032][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-08-15 01:06:02.034][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2025-08-15 01:06:02.036][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-08-15 01:06:02.037][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2025-08-15 01:06:02.039][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 357 ]
> 
> proc.time()
   user  system elapsed 
  22.60    1.40   41.23

Example timings

biodbChebi.Rcheck/biodbChebi-Ex.timings

nameusersystemelapsed
ChebiConn 3.81 2.73131.44
ChebiEntry0.480.060.56