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This page was generated on 2025-09-23 12:05 -0400 (Tue, 23 Sep 2025).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 24.04.3 LTS)x86_644.5.1 Patched (2025-08-23 r88802) -- "Great Square Root" 4816
lconwaymacOS 12.7.1 Montereyx86_644.5.1 Patched (2025-09-10 r88807) -- "Great Square Root" 4605
kjohnson3macOS 13.7.7 Venturaarm644.5.1 Patched (2025-09-10 r88807) -- "Great Square Root" 4549
taishanLinux (openEuler 24.03 LTS)aarch644.5.0 (2025-04-11) -- "How About a Twenty-Six" 4560
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 207/2334HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
biodbChebi 1.15.1  (landing page)
Pierrick Roger
Snapshot Date: 2025-09-22 13:45 -0400 (Mon, 22 Sep 2025)
git_url: https://git.bioconductor.org/packages/biodbChebi
git_branch: devel
git_last_commit: b5e26aa
git_last_commit_date: 2025-06-24 10:11:00 -0400 (Tue, 24 Jun 2025)
nebbiolo2Linux (Ubuntu 24.04.3 LTS) / x86_64  OK    OK    ERROR  
lconwaymacOS 12.7.1 Monterey / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published
kjohnson3macOS 13.7.7 Ventura / arm64  OK    OK    OK    OK  UNNEEDED, same version is already published
taishanLinux (openEuler 24.03 LTS) / aarch64  OK    ERROR  skipped

CHECK results for biodbChebi on kjohnson3

To the developers/maintainers of the biodbChebi package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/biodbChebi.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: biodbChebi
Version: 1.15.1
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:biodbChebi.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings biodbChebi_1.15.1.tar.gz
StartedAt: 2025-09-22 18:25:51 -0400 (Mon, 22 Sep 2025)
EndedAt: 2025-09-22 18:26:19 -0400 (Mon, 22 Sep 2025)
EllapsedTime: 27.4 seconds
RetCode: 0
Status:   OK  
CheckDir: biodbChebi.Rcheck
Warnings: 0

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:biodbChebi.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings biodbChebi_1.15.1.tar.gz
###
##############################################################################
##############################################################################


* using log directory ‘/Users/biocbuild/bbs-3.22-bioc/meat/biodbChebi.Rcheck’
* using R version 4.5.1 Patched (2025-09-10 r88807)
* using platform: aarch64-apple-darwin20
* R was compiled by
    Apple clang version 16.0.0 (clang-1600.0.26.6)
    GNU Fortran (GCC) 14.2.0
* running under: macOS Ventura 13.7.7
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘biodbChebi/DESCRIPTION’ ... OK
* this is package ‘biodbChebi’ version ‘1.15.1’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘biodbChebi’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘testthat.R’
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK

Installation output

biodbChebi.Rcheck/00install.out

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL biodbChebi
###
##############################################################################
##############################################################################


* installing to library ‘/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library’
* installing *source* package ‘biodbChebi’ ...
** this is package ‘biodbChebi’ version ‘1.15.1’
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (biodbChebi)

Tests output

biodbChebi.Rcheck/tests/testthat.Rout


R version 4.5.1 Patched (2025-09-10 r88807) -- "Great Square Root"
Copyright (C) 2025 The R Foundation for Statistical Computing
Platform: aarch64-apple-darwin20

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> # vi: fdm=marker
> # Script needed to run testthat automatically from ‘R CMD check’. See
> # testthat::test_dir documentation.
> library(testthat)
> library(biodbChebi)
> Sys.setenv(TESTTHAT_REPORTER="summary")
> Sys.setenv(BIODB_LOG_DST="console")
> test_check("biodbChebi")
biodb.INFO [2025-09-22 18:26:09.469][biodb::testContext]
biodb.INFO [2025-09-22 18:26:09.471][biodb::testContext] ********************************************************************************
biodb.INFO [2025-09-22 18:26:09.471][biodb::testContext] Test context - Generic tests
biodb.INFO [2025-09-22 18:26:09.471][biodb::testContext] ********************************************************************************
biodb.INFO [2025-09-22 18:26:09.471][biodb::testContext]
biodb.INFO [2025-09-22 18:26:09.474][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.17.1.
biodb.DEBUG[2025-09-22 18:26:09.475][self$loadDefinitions] Load definitions from file "/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/biodb/definitions.yml".
biodb.DEBUG[2025-09-22 18:26:09.478][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-09-22 18:26:09.478][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2025-09-22 18:26:09.478][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2025-09-22 18:26:09.479][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-22 18:26:09.479][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-22 18:26:09.479][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-22 18:26:09.480][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2025-09-22 18:26:09.485][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2025-09-22 18:26:09.486][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-22 18:26:09.486][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-22 18:26:09.486][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-22 18:26:09.487][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2025-09-22 18:26:09.487][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2025-09-22 18:26:09.487][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-22 18:26:09.487][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-22 18:26:09.488][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-22 18:26:09.488][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2025-09-22 18:26:09.488][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2025-09-22 18:26:09.488][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2025-09-22 18:26:09.489][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-22 18:26:09.489][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-22 18:26:09.489][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-22 18:26:09.489][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2025-09-22 18:26:09.490][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2025-09-22 18:26:09.490][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2025-09-22 18:26:09.490][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-22 18:26:09.490][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-22 18:26:09.491][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-22 18:26:09.491][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2025-09-22 18:26:09.491][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2025-09-22 18:26:09.491][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-22 18:26:09.492][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-22 18:26:09.492][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-22 18:26:09.492][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2025-09-22 18:26:09.492][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2025-09-22 18:26:09.493][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2025-09-22 18:26:09.493][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-22 18:26:09.493][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-22 18:26:09.493][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-22 18:26:09.494][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2025-09-22 18:26:09.494][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2025-09-22 18:26:09.494][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-22 18:26:09.494][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-22 18:26:09.495][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-22 18:26:09.495][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2025-09-22 18:26:09.495][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2025-09-22 18:26:09.495][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2025-09-22 18:26:09.496][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-22 18:26:09.496][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-22 18:26:09.496][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-22 18:26:09.496][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2025-09-22 18:26:09.497][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2025-09-22 18:26:09.497][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2025-09-22 18:26:09.497][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2025-09-22 18:26:09.497][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2025-09-22 18:26:09.498][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2025-09-22 18:26:09.498][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-22 18:26:09.498][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-22 18:26:09.498][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-22 18:26:09.499][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2025-09-22 18:26:09.499][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2025-09-22 18:26:09.499][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-22 18:26:09.499][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-22 18:26:09.500][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-22 18:26:09.500][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2025-09-22 18:26:09.500][self$set] Set key entries.sep to "|".
biodb.DEBUG[2025-09-22 18:26:09.500][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-22 18:26:09.500][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-22 18:26:09.501][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-22 18:26:09.501][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2025-09-22 18:26:09.501][self$set] Set key offline to FALSE.
biodb.DEBUG[2025-09-22 18:26:09.501][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-22 18:26:09.502][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-22 18:26:09.502][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-22 18:26:09.502][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2025-09-22 18:26:09.502][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2025-09-22 18:26:09.503][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2025-09-22 18:26:09.503][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-22 18:26:09.503][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-22 18:26:09.503][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-22 18:26:09.504][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2025-09-22 18:26:09.504][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2025-09-22 18:26:09.510][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2025-09-22 18:26:09.510][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-22 18:26:09.511][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-22 18:26:09.511][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-22 18:26:09.511][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2025-09-22 18:26:09.511][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2025-09-22 18:26:09.512][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2025-09-22 18:26:09.512][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-22 18:26:09.512][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-22 18:26:09.513][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-22 18:26:09.514][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2025-09-22 18:26:09.529][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-09-22 18:26:09.534][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2025-09-22 18:26:09.534][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-09-22 18:26:09.534][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-09-22 18:26:09.535][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-09-22 18:26:09.535][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-09-22 18:26:09.535][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-09-22 18:26:09.535][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-09-22 18:26:09.536][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2025-09-22 18:26:09.536][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-09-22 18:26:09.536][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-09-22 18:26:09.536][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2025-09-22 18:26:09.537][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-09-22 18:26:09.537][self$setPropertyValue] Setting property "parsing.expr" to "<NULL>".
biodb.DEBUG[2025-09-22 18:26:09.537][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-09-22 18:26:09.537][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-09-22 18:26:09.537][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-09-22 18:26:09.537][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-09-22 18:26:09.537][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2025-09-22 18:26:09.537][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2025-09-22 18:26:09.538][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-09-22 18:26:09.538][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-09-22 18:26:09.538][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-09-22 18:26:09.539][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-09-22 18:26:09.539][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-09-22 18:26:09.539][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-09-22 18:26:09.539][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-09-22 18:26:09.540][self$setPropertyValue] Setting property "urls" to "<NULL>".
biodb.DEBUG[2025-09-22 18:26:09.540][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-09-22 18:26:09.540][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-09-22 18:26:09.540][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-09-22 18:26:09.541][self$setPropertyValue] Setting property "xml.ns" to "<NULL>".
biodb.DEBUG[2025-09-22 18:26:09.541][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2025-09-22 18:26:09.541][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-09-22 18:26:09.542][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2025-09-22 18:26:09.542][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-09-22 18:26:09.542][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-09-22 18:26:09.543][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-09-22 18:26:09.543][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-09-22 18:26:09.543][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-09-22 18:26:09.543][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-09-22 18:26:09.544][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2025-09-22 18:26:09.544][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-09-22 18:26:09.544][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-09-22 18:26:09.544][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2025-09-22 18:26:09.545][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-09-22 18:26:09.545][self$setPropertyValue] Setting property "parsing.expr" to "<NULL>".
biodb.DEBUG[2025-09-22 18:26:09.545][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-09-22 18:26:09.545][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-09-22 18:26:09.545][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-09-22 18:26:09.545][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-09-22 18:26:09.545][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2025-09-22 18:26:09.545][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2025-09-22 18:26:09.546][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-09-22 18:26:09.546][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-09-22 18:26:09.546][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-09-22 18:26:09.546][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-09-22 18:26:09.547][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-09-22 18:26:09.547][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-09-22 18:26:09.547][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-09-22 18:26:09.547][self$setPropertyValue] Setting property "urls" to "<NULL>".
biodb.DEBUG[2025-09-22 18:26:09.548][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-09-22 18:26:09.548][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-09-22 18:26:09.548][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-09-22 18:26:09.548][self$setPropertyValue] Setting property "xml.ns" to "<NULL>".
biodb.DEBUG[2025-09-22 18:26:09.549][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2025-09-22 18:26:09.549][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-09-22 18:26:09.550][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2025-09-22 18:26:09.550][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-09-22 18:26:09.550][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-09-22 18:26:09.550][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-09-22 18:26:09.551][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-09-22 18:26:09.551][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-09-22 18:26:09.551][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-09-22 18:26:09.551][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2025-09-22 18:26:09.552][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-09-22 18:26:09.552][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2025-09-22 18:26:09.552][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2025-09-22 18:26:09.552][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-09-22 18:26:09.553][self$setPropertyValue] Setting property "parsing.expr" to "<NULL>".
biodb.DEBUG[2025-09-22 18:26:09.553][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-09-22 18:26:09.553][self$setPropertyValue] Setting property "searchable.fields" to "<NULL>".
biodb.DEBUG[2025-09-22 18:26:09.553][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-09-22 18:26:09.554][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-09-22 18:26:09.554][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-09-22 18:26:09.554][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-09-22 18:26:09.554][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-09-22 18:26:09.555][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-09-22 18:26:09.555][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-09-22 18:26:09.555][self$setPropertyValue] Setting property "urls" to "<NULL>".
biodb.DEBUG[2025-09-22 18:26:09.555][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-09-22 18:26:09.556][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-09-22 18:26:09.556][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-09-22 18:26:09.556][self$setPropertyValue] Setting property "xml.ns" to "<NULL>".
biodb.DEBUG[2025-09-22 18:26:09.556][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2025-09-22 18:26:09.557][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-09-22 18:26:09.557][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2025-09-22 18:26:09.557][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-09-22 18:26:09.558][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-09-22 18:26:09.558][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-09-22 18:26:09.558][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-09-22 18:26:09.558][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-09-22 18:26:09.559][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-09-22 18:26:09.559][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2025-09-22 18:26:09.559][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-09-22 18:26:09.559][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2025-09-22 18:26:09.560][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2025-09-22 18:26:09.560][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-09-22 18:26:09.560][self$setPropertyValue] Setting property "parsing.expr" to "<NULL>".
biodb.DEBUG[2025-09-22 18:26:09.560][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-09-22 18:26:09.561][self$setPropertyValue] Setting property "searchable.fields" to "<NULL>".
biodb.DEBUG[2025-09-22 18:26:09.561][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-09-22 18:26:09.561][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-09-22 18:26:09.561][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-09-22 18:26:09.562][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-09-22 18:26:09.562][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-09-22 18:26:09.562][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-09-22 18:26:09.562][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-09-22 18:26:09.563][self$setPropertyValue] Setting property "urls" to "<NULL>".
biodb.DEBUG[2025-09-22 18:26:09.563][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-09-22 18:26:09.563][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-09-22 18:26:09.563][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-09-22 18:26:09.564][self$setPropertyValue] Setting property "xml.ns" to "<NULL>".
biodb.DEBUG[2025-09-22 18:26:09.565][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-09-22 18:26:09.566][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2025-09-22 18:26:09.566][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-22 18:26:09.566][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-22 18:26:09.566][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-22 18:26:09.567][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-22 18:26:09.567][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-22 18:26:09.567][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-22 18:26:09.567][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-22 18:26:09.567][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-22 18:26:09.568][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-22 18:26:09.568][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-22 18:26:09.568][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-22 18:26:09.568][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-22 18:26:09.569][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-22 18:26:09.569][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-22 18:26:09.569][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-22 18:26:09.569][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-22 18:26:09.570][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-22 18:26:09.570][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-22 18:26:09.570][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-22 18:26:09.570][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-22 18:26:09.570][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-22 18:26:09.571][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-22 18:26:09.571][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-22 18:26:09.571][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-22 18:26:09.571][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-22 18:26:09.572][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-22 18:26:09.572][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-22 18:26:09.572][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-22 18:26:09.574][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-22 18:26:09.575][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-22 18:26:09.575][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-22 18:26:09.575][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-22 18:26:09.575][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-22 18:26:09.576][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-22 18:26:09.576][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-22 18:26:09.576][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-22 18:26:09.576][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-22 18:26:09.577][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-22 18:26:09.577][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-22 18:26:09.577][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-22 18:26:09.577][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-22 18:26:09.578][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-22 18:26:09.578][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-22 18:26:09.578][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-22 18:26:09.578][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-22 18:26:09.578][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-22 18:26:09.579][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-22 18:26:09.579][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-22 18:26:09.579][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-22 18:26:09.579][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-22 18:26:09.580][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-22 18:26:09.580][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-22 18:26:09.580][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-22 18:26:09.580][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-22 18:26:09.581][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-22 18:26:09.581][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-22 18:26:09.581][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-22 18:26:09.581][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-22 18:26:09.582][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-22 18:26:09.582][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-22 18:26:09.582][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-22 18:26:09.582][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-22 18:26:09.582][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-22 18:26:09.583][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-22 18:26:09.583][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-22 18:26:09.583][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-22 18:26:09.583][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-22 18:26:09.584][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-22 18:26:09.584][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-22 18:26:09.584][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-22 18:26:09.584][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-22 18:26:09.585][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-22 18:26:09.585][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-22 18:26:09.585][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-22 18:26:09.585][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-22 18:26:09.585][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-22 18:26:09.586][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-22 18:26:09.586][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-22 18:26:09.586][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-22 18:26:09.586][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-22 18:26:09.587][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-22 18:26:09.587][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2025-09-22 18:26:09.589][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2025-09-22 18:26:09.589][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2025-09-22 18:26:09.589][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2025-09-22 18:26:09.590][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2025-09-22 18:26:09.590][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2025-09-22 18:26:09.591][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2025-09-22 18:26:09.591][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2025-09-22 18:26:09.591][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2025-09-22 18:26:09.592][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2025-09-22 18:26:09.592][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2025-09-22 18:26:09.593][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2025-09-22 18:26:09.593][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2025-09-22 18:26:09.593][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2025-09-22 18:26:09.594][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2025-09-22 18:26:09.594][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2025-09-22 18:26:09.594][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2025-09-22 18:26:09.595][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2025-09-22 18:26:09.595][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2025-09-22 18:26:09.595][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2025-09-22 18:26:09.596][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2025-09-22 18:26:09.596][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2025-09-22 18:26:09.597][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2025-09-22 18:26:09.597][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2025-09-22 18:26:09.597][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2025-09-22 18:26:09.598][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2025-09-22 18:26:09.598][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2025-09-22 18:26:09.598][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2025-09-22 18:26:09.599][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2025-09-22 18:26:09.599][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2025-09-22 18:26:09.599][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2025-09-22 18:26:09.600][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2025-09-22 18:26:09.600][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2025-09-22 18:26:09.601][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2025-09-22 18:26:09.601][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2025-09-22 18:26:09.601][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2025-09-22 18:26:09.602][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2025-09-22 18:26:09.602][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2025-09-22 18:26:09.602][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2025-09-22 18:26:09.603][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2025-09-22 18:26:09.603][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2025-09-22 18:26:09.603][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2025-09-22 18:26:09.604][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2025-09-22 18:26:09.604][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2025-09-22 18:26:09.605][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2025-09-22 18:26:09.605][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2025-09-22 18:26:09.605][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2025-09-22 18:26:09.606][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2025-09-22 18:26:09.606][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2025-09-22 18:26:09.606][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2025-09-22 18:26:09.607][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2025-09-22 18:26:09.607][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2025-09-22 18:26:09.607][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2025-09-22 18:26:09.608][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2025-09-22 18:26:09.608][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2025-09-22 18:26:09.609][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2025-09-22 18:26:09.609][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2025-09-22 18:26:09.609][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2025-09-22 18:26:09.610][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2025-09-22 18:26:09.610][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2025-09-22 18:26:09.610][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2025-09-22 18:26:09.611][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2025-09-22 18:26:09.611][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2025-09-22 18:26:09.611][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2025-09-22 18:26:09.612][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2025-09-22 18:26:09.612][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2025-09-22 18:26:09.612][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2025-09-22 18:26:09.613][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2025-09-22 18:26:09.613][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2025-09-22 18:26:09.614][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2025-09-22 18:26:09.614][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2025-09-22 18:26:09.614][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2025-09-22 18:26:09.615][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2025-09-22 18:26:09.615][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2025-09-22 18:26:09.615][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2025-09-22 18:26:09.616][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2025-09-22 18:26:09.616][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2025-09-22 18:26:09.617][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2025-09-22 18:26:09.617][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2025-09-22 18:26:09.617][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2025-09-22 18:26:09.618][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2025-09-22 18:26:09.618][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2025-09-22 18:26:09.618][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2025-09-22 18:26:09.620][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2025-09-22 18:26:09.621][initialize] This is biodb version 1.17.1.
biodb.DEBUG[2025-09-22 18:26:09.622][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-09-22 18:26:09.622][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2025-09-22 18:26:09.623][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-22 18:26:09.623][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2025-09-22 18:26:09.625][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-22 18:26:09.627][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-22 18:26:09.627][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-22 18:26:09.628][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-22 18:26:09.628][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-22 18:26:09.628][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-22 18:26:09.628][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-22 18:26:09.629][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-22 18:26:09.629][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-22 18:26:09.629][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-22 18:26:09.629][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-22 18:26:09.630][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-22 18:26:09.630][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-22 18:26:09.630][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-22 18:26:09.630][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-22 18:26:09.631][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-22 18:26:09.631][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-22 18:26:09.631][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-22 18:26:09.631][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-22 18:26:09.632][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-22 18:26:09.632][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-22 18:26:09.632][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-22 18:26:09.632][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-22 18:26:09.632][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-22 18:26:09.633][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-22 18:26:09.633][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-22 18:26:09.633][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-22 18:26:09.633][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-22 18:26:09.634][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-22 18:26:09.634][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-22 18:26:09.634][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-22 18:26:09.634][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-22 18:26:09.635][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-22 18:26:09.635][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-22 18:26:09.635][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-22 18:26:09.635][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-22 18:26:09.635][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-22 18:26:09.636][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-22 18:26:09.636][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-22 18:26:09.636][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-22 18:26:09.636][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-22 18:26:09.637][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-22 18:26:09.637][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-22 18:26:09.637][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-22 18:26:09.637][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-22 18:26:09.638][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-22 18:26:09.638][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-22 18:26:09.638][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-22 18:26:09.638][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-22 18:26:09.638][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-22 18:26:09.639][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-22 18:26:09.639][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-22 18:26:09.639][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-22 18:26:09.639][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-22 18:26:09.640][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-22 18:26:09.640][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-22 18:26:09.640][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-22 18:26:09.640][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-22 18:26:09.640][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-22 18:26:09.641][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-22 18:26:09.641][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-22 18:26:09.641][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-22 18:26:09.641][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-22 18:26:09.642][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-22 18:26:09.642][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-22 18:26:09.642][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-22 18:26:09.642][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-22 18:26:09.643][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-22 18:26:09.643][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-22 18:26:09.643][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-22 18:26:09.643][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-22 18:26:09.643][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-22 18:26:09.644][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-22 18:26:09.644][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-22 18:26:09.644][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-22 18:26:09.644][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-22 18:26:09.645][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-22 18:26:09.645][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-22 18:26:09.645][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-22 18:26:09.645][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-22 18:26:09.645][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-22 18:26:09.646][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-22 18:26:09.646][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-22 18:26:09.646][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-22 18:26:09.646][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-22 18:26:09.647][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-22 18:26:09.647][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-22 18:26:09.647][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-22 18:26:09.647][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-22 18:26:09.648][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-22 18:26:09.648][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-22 18:26:09.648][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-22 18:26:09.648][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-22 18:26:09.648][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-22 18:26:09.649][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-22 18:26:09.649][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-22 18:26:09.649][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-22 18:26:09.649][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-22 18:26:09.650][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-22 18:26:09.650][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-22 18:26:09.650][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-22 18:26:09.650][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-22 18:26:09.650][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-22 18:26:09.651][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-22 18:26:09.651][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-22 18:26:09.651][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-22 18:26:09.651][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-22 18:26:09.652][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-22 18:26:09.652][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-22 18:26:09.652][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-22 18:26:09.652][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-22 18:26:09.653][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-22 18:26:09.653][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-22 18:26:09.653][biodb$loadDefinitions] Load definitions from file "/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/biodbChebi/definitions.yml".
biodb.DEBUG[2025-09-22 18:26:09.656][self$getDbsInfo()$define] Define connector chebi.
biodb.DEBUG[2025-09-22 18:26:09.665][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-09-22 18:26:09.665][self$setPropertyValue] Setting property "description" to "NA".
biodb.DEBUG[2025-09-22 18:26:09.666][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-09-22 18:26:09.666][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-09-22 18:26:09.666][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-09-22 18:26:09.666][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-09-22 18:26:09.667][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2025-09-22 18:26:09.667][self$setPropertyValue] Setting property "entry.content.encoding" to "UTF-8".
biodb.DEBUG[2025-09-22 18:26:09.667][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2025-09-22 18:26:09.667][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-09-22 18:26:09.668][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-09-22 18:26:09.668][self$setPropertyValue] Setting property "name" to "ChEBI".
biodb.DEBUG[2025-09-22 18:26:09.668][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-09-22 18:26:09.668][self$setPropertyValue] Setting property "parsing.expr" to "substring-after(//chebi:return/chebi:chebiId,'CHEBI:')".
biodb.DEBUG[2025-09-22 18:26:09.668][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:charge".
biodb.DEBUG[2025-09-22 18:26:09.668][self$setPropertyValue] Setting property "parsing.expr" to "c("//chebi:Formulae/chebi:source[text()='ChEBI']/../chebi:data", "(//chebi:Formulae/chebi:data)[1]")".
biodb.DEBUG[2025-09-22 18:26:09.668][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:inchi".
biodb.DEBUG[2025-09-22 18:26:09.668][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:inchiKey".
biodb.DEBUG[2025-09-22 18:26:09.668][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:DatabaseLinks/chebi:type[text()='KEGG COMPOUND accession']/../chebi:data".
biodb.DEBUG[2025-09-22 18:26:09.668][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:mass".
biodb.DEBUG[2025-09-22 18:26:09.668][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:monoisotopicMass".
biodb.DEBUG[2025-09-22 18:26:09.668][self$setPropertyValue] Setting property "parsing.expr" to "c("//chebi:chebiAsciiName", "//chebi:Synonyms/chebi:data")".
biodb.DEBUG[2025-09-22 18:26:09.668][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:entityStar".
biodb.DEBUG[2025-09-22 18:26:09.668][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:smiles".
biodb.DEBUG[2025-09-22 18:26:09.669][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2025-09-22 18:26:09.669][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-09-22 18:26:09.669][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-09-22 18:26:09.669][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-09-22 18:26:09.669][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2025-09-22 18:26:09.670][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-09-22 18:26:09.670][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-09-22 18:26:09.670][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-09-22 18:26:09.670][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-09-22 18:26:09.671][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-09-22 18:26:09.671][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-09-22 18:26:09.673][self$setPropertyValue] Setting property "urls" to "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-09-22 18:26:09.673][self$setPropertyValue] Setting property "urls" to "https://www.ebi.ac.uk/webservices/chebi/2.0/".
biodb.DEBUG[2025-09-22 18:26:09.673][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-09-22 18:26:09.673][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-09-22 18:26:09.674][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2025-09-22 18:26:09.674][self$setPropertyValue] Setting property "xml.ns" to "https://www.ebi.ac.uk/webservices/chebi".
biodb.DEBUG[2025-09-22 18:26:09.674][self$setPropertyValue] Setting property "xml.ns" to "http://www.w3.org/2001/XMLSchema".
biodb.DEBUG[2025-09-22 18:26:09.676][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2025-09-22 18:26:09.676][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2025-09-22 18:26:09.677][self$getEntryFields()$define] Define field n_stars.
biodb.DEBUG[2025-09-22 18:26:09.677][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2025-09-22 18:26:09.678][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2025-09-22 18:26:09.678][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2025-09-22 18:26:09.687][super$initialize] Initialize connector chebi.
biodb.DEBUG[2025-09-22 18:26:09.694][biodb$getFactory()$createConn] Creating new connector chebi for database class chebi .
biodb.INFO [2025-09-22 18:26:09.697][biodb::testThat]
biodb.INFO [2025-09-22 18:26:09.698][biodb::testThat] Running test function  test.entry.fields  (" Entry fields have a correct value ").
biodb.INFO [2025-09-22 18:26:09.698][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-09-22 18:26:09.698][biodb::testThat]
biodb.TRACE[2025-09-22 18:26:09.700][loadFileContents] Loaded 1 files from cache: [1]: "/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/biodbChebi/testref/entry-chebi-15440-content.xml".
biodb.DEBUG[2025-09-22 18:26:09.700][biodb$getFactory()$createEntryFromCo ...] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-09-22 18:26:09.702][biodb$getFactory()$createEntryFromCo ...] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-09-22 18:26:09.705][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-22 18:26:09.705][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-22 18:26:09.705][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-22 18:26:09.710][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-22 18:26:09.711][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-22 18:26:09.711][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-22 18:26:09.711][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-22 18:26:09.715][ef$get] Asked field names are: accession.
biodb.TRACE[2025-09-22 18:26:09.715][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-22 18:26:09.716][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:09.716][ef$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:09.716][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-22 18:26:09.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-22 18:26:09.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:09.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:09.721][ef$get] Asked field names are: charge.
biodb.TRACE[2025-09-22 18:26:09.722][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-09-22 18:26:09.722][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:09.722][ef$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:09.731][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-09-22 18:26:09.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-09-22 18:26:09.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:09.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:09.732][ef$get] Asked field names are: formula.
biodb.TRACE[2025-09-22 18:26:09.732][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-22 18:26:09.732][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:09.733][ef$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:09.733][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-09-22 18:26:09.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-22 18:26:09.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:09.734][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:09.734][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-09-22 18:26:09.734][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-22 18:26:09.735][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:09.735][ef$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:09.735][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-09-22 18:26:09.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-22 18:26:09.736][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:09.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:09.736][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-22 18:26:09.737][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-22 18:26:09.737][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:09.737][ef$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:09.738][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-22 18:26:09.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-22 18:26:09.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:09.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:09.739][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-09-22 18:26:09.739][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-09-22 18:26:09.739][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:09.740][ef$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:09.745][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-09-22 18:26:09.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-09-22 18:26:09.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:09.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:09.746][ef$get] Asked field names are: mass.
biodb.TRACE[2025-09-22 18:26:09.746][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:09.747][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:09.747][ef$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:09.747][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-09-22 18:26:09.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:09.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:09.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:09.749][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:09.749][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:09.749][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:09.749][ef$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:09.750][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:09.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:09.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:09.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:09.751][ef$get] Asked field names are: name.
biodb.TRACE[2025-09-22 18:26:09.751][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-09-22 18:26:09.751][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:09.752][ef$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:09.752][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-22 18:26:09.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-22 18:26:09.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:09.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:09.753][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-09-22 18:26:09.754][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-09-22 18:26:09.754][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:09.754][ef$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:09.754][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-09-22 18:26:09.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-09-22 18:26:09.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:09.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:09.756][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-09-22 18:26:09.756][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-22 18:26:09.756][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:09.756][ef$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:09.757][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-09-22 18:26:09.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-22 18:26:09.757][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:09.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:09.758][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-22 18:26:09.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-22 18:26:09.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:09.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:09.759][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-22 18:26:09.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-22 18:26:09.760][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:09.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:09.760][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-22 18:26:09.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-22 18:26:09.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:09.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:09.761][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-22 18:26:09.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-22 18:26:09.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:09.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:09.762][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-22 18:26:09.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-22 18:26:09.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:09.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:09.763][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-22 18:26:09.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-22 18:26:09.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:09.764][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:09.764][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-22 18:26:09.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-22 18:26:09.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:09.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:09.776][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-22 18:26:09.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-22 18:26:09.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:09.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:09.777][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-22 18:26:09.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-22 18:26:09.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:09.778][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:09.778][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-22 18:26:09.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-22 18:26:09.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:09.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-22 18:26:09.779][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 15440.
biodb.TRACE[2025-09-22 18:26:09.780][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-09-22 18:26:09.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-22 18:26:09.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:09.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:09.781][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-09-22 18:26:09.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-22 18:26:09.782][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:09.782][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:09.791][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-22 18:26:09.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-22 18:26:09.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:09.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:09.793][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-22 18:26:09.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-22 18:26:09.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:09.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:09.794][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:09.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:09.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:09.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:09.795][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:09.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:09.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:09.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:09.796][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-09-22 18:26:09.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-09-22 18:26:09.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:09.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:09.797][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-09-22 18:26:09.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-09-22 18:26:09.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:09.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:09.798][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2025-09-22 18:26:09.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-09-22 18:26:09.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:09.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:09.799][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-09-22 18:26:09.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-09-22 18:26:09.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:09.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:09.801][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-22 18:26:09.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-22 18:26:09.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:09.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:09.806][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-22 18:26:09.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-22 18:26:09.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:09.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:09.809][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-22 18:26:09.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-22 18:26:09.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:09.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:09.810][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-22 18:26:09.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-22 18:26:09.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:09.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:09.811][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-22 18:26:09.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-22 18:26:09.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:09.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:09.813][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-22 18:26:09.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-22 18:26:09.813][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:09.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:09.814][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-22 18:26:09.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-22 18:26:09.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:09.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:09.815][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-22 18:26:09.815][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-22 18:26:09.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:09.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:09.816][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-22 18:26:09.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-22 18:26:09.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:09.817][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:09.817][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-22 18:26:09.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-22 18:26:09.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:09.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:09.818][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-22 18:26:09.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-22 18:26:09.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:09.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:09.822][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-22 18:26:09.822][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-22 18:26:09.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:09.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:09.823][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-22 18:26:09.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-22 18:26:09.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:09.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:09.825][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-22 18:26:09.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-22 18:26:09.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:09.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:09.826][ef$get] Asked field names are: accession.
biodb.TRACE[2025-09-22 18:26:09.826][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-22 18:26:09.826][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:09.826][ef$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:09.827][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-22 18:26:09.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-22 18:26:09.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:09.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:09.833][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-22 18:26:09.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-22 18:26:09.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:09.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:09.834][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-22 18:26:09.835][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-22 18:26:09.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:09.835][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:09.836][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-22 18:26:09.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-22 18:26:09.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:09.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:09.837][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-22 18:26:09.837][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-22 18:26:09.837][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:09.838][ef$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:09.838][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-22 18:26:09.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-22 18:26:09.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:09.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:09.842][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-22 18:26:09.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-22 18:26:09.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:09.843][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:09.843][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-22 18:26:09.844][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-22 18:26:09.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:09.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:09.844][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-22 18:26:09.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-22 18:26:09.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:09.845][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:09.845][ef$get] Asked field names are: name.
biodb.TRACE[2025-09-22 18:26:09.846][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-09-22 18:26:09.846][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:09.846][ef$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:09.847][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-22 18:26:09.847][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-22 18:26:09.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:09.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:09.850][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-09-22 18:26:09.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-22 18:26:09.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:09.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:09.852][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-09-22 18:26:09.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-22 18:26:09.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:09.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:09.853][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-09-22 18:26:09.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-22 18:26:09.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:09.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:09.854][ef$get] Asked field names are: formula.
biodb.TRACE[2025-09-22 18:26:09.854][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-22 18:26:09.854][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:09.855][ef$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:09.855][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-09-22 18:26:09.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-22 18:26:09.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:09.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:09.859][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:09.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:09.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:09.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:09.860][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:09.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:09.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:09.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:09.861][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:09.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:09.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:09.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:09.862][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:09.863][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:09.863][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:09.863][ef$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:09.864][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:09.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:09.864][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:09.864][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:09.868][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:09.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:09.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:09.869][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:09.869][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:09.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:09.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:09.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:09.870][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:09.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:09.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:09.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:09.871][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:09.872][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:09.872][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:09.872][ef$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:09.872][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:09.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:09.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:09.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:09.876][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-09-22 18:26:09.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-09-22 18:26:09.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:09.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:09.897][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-09-22 18:26:09.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-09-22 18:26:09.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:09.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:09.899][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-09-22 18:26:09.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-09-22 18:26:09.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:09.899][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:09.900][ef$get] Asked field names are: charge.
biodb.TRACE[2025-09-22 18:26:09.900][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-09-22 18:26:09.900][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:09.900][ef$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:09.901][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-09-22 18:26:09.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-09-22 18:26:09.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:09.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:09.905][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-09-22 18:26:09.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-09-22 18:26:09.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:09.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:09.906][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-09-22 18:26:09.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-09-22 18:26:09.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:09.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:09.907][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-09-22 18:26:09.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-09-22 18:26:09.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:09.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:09.908][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-09-22 18:26:09.908][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-09-22 18:26:09.908][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:09.909][ef$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:09.909][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-09-22 18:26:09.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-09-22 18:26:09.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:09.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:09.913][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-09-22 18:26:09.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-09-22 18:26:09.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:09.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:09.914][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-09-22 18:26:09.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-09-22 18:26:09.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:09.914][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:09.915][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-09-22 18:26:09.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-09-22 18:26:09.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:09.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:09.916][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-09-22 18:26:09.916][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-09-22 18:26:09.916][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:09.917][ef$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:09.917][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-09-22 18:26:09.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-09-22 18:26:09.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:09.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:09.920][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-09-22 18:26:09.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-22 18:26:09.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:09.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:09.922][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-09-22 18:26:09.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-22 18:26:09.922][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:09.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:09.923][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-09-22 18:26:09.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-22 18:26:09.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:09.923][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:09.924][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-09-22 18:26:09.924][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-22 18:26:09.924][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:09.924][ef$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:09.925][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-09-22 18:26:09.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-22 18:26:09.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:09.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:09.928][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-22 18:26:09.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-22 18:26:09.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:09.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:09.929][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-22 18:26:09.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-22 18:26:09.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:09.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:09.930][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-22 18:26:09.931][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-22 18:26:09.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:09.931][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:09.932][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-22 18:26:09.932][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-22 18:26:09.932][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:09.932][ef$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:09.933][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-22 18:26:09.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-22 18:26:09.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:09.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:09.936][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-09-22 18:26:09.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-22 18:26:09.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:09.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:09.937][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-09-22 18:26:09.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-22 18:26:09.938][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:09.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:09.938][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-09-22 18:26:09.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-22 18:26:09.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:09.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:09.940][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-09-22 18:26:09.940][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-22 18:26:09.940][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:09.943][ef$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:09.943][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-09-22 18:26:09.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-22 18:26:09.944][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:09.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:09.947][ef$get] Asked field names are: accession.
biodb.TRACE[2025-09-22 18:26:09.948][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-22 18:26:09.948][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:09.948][ef$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:09.950][ef$get] Asked field names are: charge.
biodb.TRACE[2025-09-22 18:26:09.950][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-09-22 18:26:09.950][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:09.951][ef$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:09.952][ef$get] Asked field names are: formula.
biodb.TRACE[2025-09-22 18:26:09.952][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-22 18:26:09.953][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:09.953][ef$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:09.954][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-09-22 18:26:09.955][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-22 18:26:09.955][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:09.955][ef$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:09.957][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-22 18:26:09.957][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-22 18:26:09.957][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:09.958][ef$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:09.959][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-09-22 18:26:09.959][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-09-22 18:26:09.960][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:09.960][ef$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:09.962][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:09.962][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:09.962][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:09.962][ef$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:09.964][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:09.964][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:09.965][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:09.965][ef$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:09.966][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-09-22 18:26:09.967][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-09-22 18:26:09.967][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:09.967][ef$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:09.969][ef$get] Asked field names are: name.
biodb.TRACE[2025-09-22 18:26:09.969][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-09-22 18:26:09.969][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:09.969][ef$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:09.971][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-09-22 18:26:09.971][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-22 18:26:09.972][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:09.972][ef$get] fields variable is a list.
biodb.INFO [2025-09-22 18:26:09.974][biodb::testThat]
biodb.INFO [2025-09-22 18:26:09.975][biodb::testThat] Running test function  test.rt.unit  (" RT unit is defined when there is an RT value. ").
biodb.INFO [2025-09-22 18:26:09.975][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-09-22 18:26:09.975][biodb::testThat]
biodb.DEBUG[2025-09-22 18:26:09.980][private$loadEntries] Creating entries from ids [1]: "15440".
biodb.DEBUG[2025-09-22 18:26:09.981][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-09-22 18:26:09.983][cch$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-09-22 18:26:09.985][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/15440.xml.
biodb.DEBUG[2025-09-22 18:26:09.985][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-09-22 18:26:09.996][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-09-22 18:26:09.996][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-09-22 18:26:09.997][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-22 18:26:09.997][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-22 18:26:09.997][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-22 18:26:09.999][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-22 18:26:10.000][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-22 18:26:10.000][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-22 18:26:10.000][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-22 18:26:10.001][ef$get] Asked field names are: accession.
biodb.TRACE[2025-09-22 18:26:10.001][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-22 18:26:10.001][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:10.002][ef$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:10.002][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-22 18:26:10.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-22 18:26:10.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:10.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:10.009][ef$get] Asked field names are: charge.
biodb.TRACE[2025-09-22 18:26:10.009][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-09-22 18:26:10.009][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:10.010][ef$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:10.010][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-09-22 18:26:10.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-09-22 18:26:10.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:10.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:10.011][ef$get] Asked field names are: formula.
biodb.TRACE[2025-09-22 18:26:10.012][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-22 18:26:10.012][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:10.012][ef$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:10.012][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-09-22 18:26:10.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-22 18:26:10.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:10.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:10.014][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-09-22 18:26:10.014][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-22 18:26:10.014][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:10.014][ef$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:10.015][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-09-22 18:26:10.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-22 18:26:10.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:10.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:10.016][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-22 18:26:10.016][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-22 18:26:10.016][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:10.017][ef$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:10.017][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-22 18:26:10.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-22 18:26:10.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:10.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:10.018][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-09-22 18:26:10.018][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-09-22 18:26:10.019][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:10.019][ef$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:10.019][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-09-22 18:26:10.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-09-22 18:26:10.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:10.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:10.020][ef$get] Asked field names are: mass.
biodb.TRACE[2025-09-22 18:26:10.021][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:10.021][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:10.021][ef$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:10.021][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-09-22 18:26:10.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:10.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:10.022][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:10.022][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:10.023][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:10.023][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:10.023][ef$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:10.023][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:10.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:10.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:10.024][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:10.025][ef$get] Asked field names are: name.
biodb.TRACE[2025-09-22 18:26:10.025][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-09-22 18:26:10.025][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:10.025][ef$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:10.026][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-22 18:26:10.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-22 18:26:10.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:10.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:10.027][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-09-22 18:26:10.027][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-09-22 18:26:10.027][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:10.027][ef$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:10.028][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-09-22 18:26:10.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-09-22 18:26:10.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:10.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:10.029][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-09-22 18:26:10.029][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-22 18:26:10.029][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:10.030][ef$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:10.030][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-09-22 18:26:10.030][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-22 18:26:10.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:10.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:10.031][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-22 18:26:10.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-22 18:26:10.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:10.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:10.032][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-22 18:26:10.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-22 18:26:10.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:10.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:10.033][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-22 18:26:10.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-22 18:26:10.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:10.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:10.034][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-22 18:26:10.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-22 18:26:10.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:10.037][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:10.037][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-22 18:26:10.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-22 18:26:10.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:10.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:10.038][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-22 18:26:10.039][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-22 18:26:10.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:10.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:10.040][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-22 18:26:10.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-22 18:26:10.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:10.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:10.041][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-22 18:26:10.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-22 18:26:10.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:10.041][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:10.042][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-22 18:26:10.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-22 18:26:10.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:10.042][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:10.043][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-22 18:26:10.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-22 18:26:10.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:10.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-22 18:26:10.044][self$createEntryFromContent] Accession numbers: 15440.
biodb.TRACE[2025-09-22 18:26:10.044][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2025-09-22 18:26:10.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2025-09-22 18:26:10.045][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:10.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:10.045][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2025-09-22 18:26:10.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2025-09-22 18:26:10.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:10.046][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:10.046][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2025-09-22 18:26:10.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2025-09-22 18:26:10.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:10.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2025-09-22 18:26:10.050][biodb::testThat]
biodb.INFO [2025-09-22 18:26:10.050][biodb::testThat] Running test function  test.searchForEntries  (" We can search for an entry by searchable field ").
biodb.INFO [2025-09-22 18:26:10.051][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-09-22 18:26:10.051][biodb::testThat]
biodb.TRACE[2025-09-22 18:26:10.052][ef$get] Asked field names are: name.
biodb.TRACE[2025-09-22 18:26:10.052][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-09-22 18:26:10.052][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:10.053][ef$get] fields variable is a list.
biodb.DEBUG[2025-09-22 18:26:10.053][function(conn, opt)] Testing searchForEntries() with entry "15440" and field "name".
biodb.TRACE[2025-09-22 18:26:10.061][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-22 18:26:10.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-22 18:26:10.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:10.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:10.063][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-22 18:26:10.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-22 18:26:10.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:10.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:10.064][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-22 18:26:10.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-22 18:26:10.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:10.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-22 18:26:10.066][function(conn, opt)] With value "squalene".
sched.DEBUG[2025-09-22 18:26:10.068][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/webservice?wsdl".
fscache.INFO [2025-09-22 18:26:10.074][private$cache$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/sched.
fscache.DEBUG[2025-09-22 18:26:10.076][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/sched/a2ed8f44d213d85be0d7e9a0448c78ad.content.
sched.DEBUG[2025-09-22 18:26:10.076][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
sched.DEBUG[2025-09-22 18:26:10.085][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-09-22 18:26:10.095][private$cache$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/sched.
fscache.DEBUG[2025-09-22 18:26:10.097][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/sched/80cdc67a2a6332dd4ceb98b7656194b9.content.
sched.DEBUG[2025-09-22 18:26:10.097][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-09-22 18:26:10.098][function(conn, opt)] With found IDs [1]: "15440".
biodb.TRACE[2025-09-22 18:26:10.102][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:10.102][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:10.103][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:10.103][ef$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:10.103][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:10.103][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:10.104][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:10.104][ef$get] fields variable is a list.
biodb.INFO [2025-09-22 18:26:10.105][biodb::testThat]
biodb.INFO [2025-09-22 18:26:10.106][biodb::testThat] Running test function  test.searchByName  (" We can search for an entry by name. ").
biodb.INFO [2025-09-22 18:26:10.106][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-09-22 18:26:10.106][biodb::testThat]
biodb.TRACE[2025-09-22 18:26:10.114][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-22 18:26:10.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-22 18:26:10.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:10.115][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:10.115][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-22 18:26:10.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-22 18:26:10.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:10.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:10.116][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-22 18:26:10.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-22 18:26:10.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:10.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
sched.DEBUG[2025-09-22 18:26:10.138][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-09-22 18:26:10.139][private$cache$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/sched.
fscache.DEBUG[2025-09-22 18:26:10.140][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/sched/80cdc67a2a6332dd4ceb98b7656194b9.content.
sched.DEBUG[2025-09-22 18:26:10.140][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.INFO [2025-09-22 18:26:10.146][biodb::testThat]
biodb.INFO [2025-09-22 18:26:10.146][biodb::testThat] Running test function  testEntryLoading  (" We can load an entry from the database. ").
biodb.INFO [2025-09-22 18:26:10.146][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-09-22 18:26:10.147][biodb::testThat]
biodb.TRACE[2025-09-22 18:26:10.153][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-09-22 18:26:10.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-22 18:26:10.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:10.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:10.154][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-09-22 18:26:10.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-22 18:26:10.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:10.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:10.155][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-22 18:26:10.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-22 18:26:10.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:10.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:10.156][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-22 18:26:10.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-22 18:26:10.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:10.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:10.158][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:10.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:10.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:10.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:10.159][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:10.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:10.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:10.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:10.160][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-09-22 18:26:10.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-09-22 18:26:10.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:10.160][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:10.161][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-09-22 18:26:10.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-09-22 18:26:10.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:10.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:10.162][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2025-09-22 18:26:10.162][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-09-22 18:26:10.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:10.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:10.163][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-09-22 18:26:10.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-09-22 18:26:10.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:10.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:10.172][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-09-22 18:26:10.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-22 18:26:10.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:10.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:10.173][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-09-22 18:26:10.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-22 18:26:10.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:10.174][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:10.174][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-22 18:26:10.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-22 18:26:10.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:10.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:10.175][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-22 18:26:10.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-22 18:26:10.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:10.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:10.176][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:10.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:10.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:10.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:10.177][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:10.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:10.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:10.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:10.178][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-09-22 18:26:10.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-09-22 18:26:10.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:10.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:10.179][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-09-22 18:26:10.179][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-09-22 18:26:10.180][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:10.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:10.180][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2025-09-22 18:26:10.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-09-22 18:26:10.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:10.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:10.181][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-09-22 18:26:10.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-09-22 18:26:10.182][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:10.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2025-09-22 18:26:10.185][biodb::testThat]
biodb.INFO [2025-09-22 18:26:10.185][biodb::testThat] Running test function  test.entry.page.url  (" We can get a URL pointing to the entry page. ").
biodb.INFO [2025-09-22 18:26:10.185][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-09-22 18:26:10.185][biodb::testThat]
biodb.INFO [2025-09-22 18:26:10.188][biodb::testThat]
biodb.INFO [2025-09-22 18:26:10.188][biodb::testThat] Running test function  test.entry.image.url  (" We can get a URL pointing to the entry image. ").
biodb.INFO [2025-09-22 18:26:10.189][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-09-22 18:26:10.189][biodb::testThat]
biodb.INFO [2025-09-22 18:26:10.191][biodb::testThat]
biodb.INFO [2025-09-22 18:26:10.191][biodb::testThat] Running test function  test.entry.page.url.download  (" The entry page URL can be downloaded. ").
biodb.INFO [2025-09-22 18:26:10.192][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-09-22 18:26:10.192][biodb::testThat]
biodb.DEBUG[2025-09-22 18:26:10.193][function(conn, opt)] Trying to download "https://www.ebi.ac.uk/chebi/searchId.do?chebiId=15440".
sched.TRACE[2025-09-22 18:26:11.124][try_get_rcurl_content] Using RCurl package for sending request (https://www.ebi.ac.uk/chebi/searchId.do?chebiId=15440).
biodb.INFO [2025-09-22 18:26:12.236][biodb::testThat]
biodb.INFO [2025-09-22 18:26:12.236][biodb::testThat] Running test function  test.entry.image.url.download  (" The entry image URL can be downloaded. ").
biodb.INFO [2025-09-22 18:26:12.236][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-09-22 18:26:12.236][biodb::testThat]
biodb.TRACE[2025-09-22 18:26:12.238][ef$get] Asked field names are: name.
biodb.TRACE[2025-09-22 18:26:12.239][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-09-22 18:26:12.239][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:12.239][ef$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:12.240][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:12.240][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:12.240][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:12.240][ef$get] fields variable is a list.
biodb.INFO [2025-09-22 18:26:12.241][biodb::testThat]
biodb.INFO [2025-09-22 18:26:12.241][biodb::testThat] Running test function  test.searchCompound  (" We can search for a compound ").
biodb.INFO [2025-09-22 18:26:12.242][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-09-22 18:26:12.242][biodb::testThat]
biodb.TRACE[2025-09-22 18:26:12.245][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-22 18:26:12.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-22 18:26:12.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:12.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:12.247][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-22 18:26:12.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-22 18:26:12.247][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:12.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:12.248][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-22 18:26:12.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-22 18:26:12.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:12.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
sched.DEBUG[2025-09-22 18:26:12.285][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-09-22 18:26:12.286][private$cache$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/sched.
fscache.DEBUG[2025-09-22 18:26:12.287][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/sched/80cdc67a2a6332dd4ceb98b7656194b9.content.
sched.DEBUG[2025-09-22 18:26:12.287][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
sched.DEBUG[2025-09-22 18:26:12.315][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-09-22 18:26:12.316][private$cache$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/sched.
fscache.DEBUG[2025-09-22 18:26:12.317][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/sched/80cdc67a2a6332dd4ceb98b7656194b9.content.
sched.DEBUG[2025-09-22 18:26:12.318][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.TRACE[2025-09-22 18:26:12.322][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-09-22 18:26:12.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-09-22 18:26:12.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:12.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:12.325][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:12.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:12.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:12.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:12.326][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:12.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:12.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:12.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:12.327][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:12.327][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:12.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:12.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:12.328][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:12.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:12.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:12.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:12.329][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:12.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:12.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:12.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
sched.DEBUG[2025-09-22 18:26:12.333][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.72*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-09-22 18:26:12.334][private$cache$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/sched.
fscache.DEBUG[2025-09-22 18:26:12.335][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/sched/8fc54eee7e982ce554bee8000d8203f7.content.
sched.DEBUG[2025-09-22 18:26:12.336][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-09-22 18:26:12.337][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-22 18:26:12.337][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-22 18:26:12.338][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-22 18:26:12.339][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-22 18:26:12.340][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-22 18:26:12.340][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-22 18:26:12.340][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-22 18:26:12.340][private$loadEntries] Creating entries from ids [1]: "192288".
biodb.DEBUG[2025-09-22 18:26:12.363][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-09-22 18:26:12.364][cch$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-09-22 18:26:12.365][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/192288.xml.
biodb.DEBUG[2025-09-22 18:26:12.366][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-09-22 18:26:12.366][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-09-22 18:26:12.367][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-09-22 18:26:12.367][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-22 18:26:12.367][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-22 18:26:12.368][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-22 18:26:12.370][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-22 18:26:12.370][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-22 18:26:12.370][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-22 18:26:12.370][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-22 18:26:12.371][ef$get] Asked field names are: accession.
biodb.TRACE[2025-09-22 18:26:12.372][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-22 18:26:12.372][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:12.372][ef$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:12.373][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-22 18:26:12.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-22 18:26:12.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:12.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:12.374][ef$get] Asked field names are: charge.
biodb.TRACE[2025-09-22 18:26:12.374][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-09-22 18:26:12.374][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:12.374][ef$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:12.375][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-09-22 18:26:12.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-09-22 18:26:12.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:12.376][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:12.376][ef$get] Asked field names are: formula.
biodb.TRACE[2025-09-22 18:26:12.376][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-22 18:26:12.376][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:12.377][ef$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:12.377][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-09-22 18:26:12.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-22 18:26:12.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:12.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:12.378][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-09-22 18:26:12.379][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-22 18:26:12.379][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:12.379][ef$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:12.379][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-09-22 18:26:12.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-22 18:26:12.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:12.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:12.381][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-22 18:26:12.381][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-22 18:26:12.381][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:12.381][ef$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:12.382][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-22 18:26:12.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-22 18:26:12.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:12.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:12.383][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-09-22 18:26:12.383][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-09-22 18:26:12.383][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:12.383][ef$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:12.384][ef$get] Asked field names are: mass.
biodb.TRACE[2025-09-22 18:26:12.384][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:12.384][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:12.385][ef$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:12.387][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-09-22 18:26:12.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:12.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:12.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:12.389][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:12.389][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:12.389][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:12.390][ef$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:12.390][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:12.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:12.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:12.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:12.391][ef$get] Asked field names are: name.
biodb.TRACE[2025-09-22 18:26:12.391][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-09-22 18:26:12.391][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:12.392][ef$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:12.392][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-22 18:26:12.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-22 18:26:12.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:12.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:12.393][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-09-22 18:26:12.393][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-09-22 18:26:12.394][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:12.394][ef$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:12.394][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-09-22 18:26:12.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-09-22 18:26:12.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:12.395][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:12.395][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-09-22 18:26:12.396][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-22 18:26:12.396][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:12.396][ef$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:12.397][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-09-22 18:26:12.397][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-22 18:26:12.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:12.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:12.398][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-22 18:26:12.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-22 18:26:12.398][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:12.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:12.399][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-22 18:26:12.399][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-22 18:26:12.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:12.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:12.400][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-22 18:26:12.400][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-22 18:26:12.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:12.400][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:12.401][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-22 18:26:12.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-22 18:26:12.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:12.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:12.402][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-22 18:26:12.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-22 18:26:12.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:12.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:12.403][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-22 18:26:12.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-22 18:26:12.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:12.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:12.404][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-22 18:26:12.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-22 18:26:12.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:12.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:12.405][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-22 18:26:12.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-22 18:26:12.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:12.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:12.406][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-22 18:26:12.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-22 18:26:12.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:12.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:12.407][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-22 18:26:12.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-22 18:26:12.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:12.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-22 18:26:12.408][self$createEntryFromContent] Accession numbers: 192288.
biodb.TRACE[2025-09-22 18:26:12.411][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:12.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:12.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:12.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:12.412][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:12.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:12.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:12.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:12.413][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:12.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:12.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:12.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
sched.DEBUG[2025-09-22 18:26:12.415][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.73*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-09-22 18:26:12.416][private$cache$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/sched.
fscache.DEBUG[2025-09-22 18:26:12.419][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/sched/6def615835d7c1dfccd5a5f135bd2f9d.content.
sched.DEBUG[2025-09-22 18:26:12.419][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-09-22 18:26:12.427][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-22 18:26:12.428][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-22 18:26:12.428][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-22 18:26:12.430][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-22 18:26:12.430][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-22 18:26:12.431][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-22 18:26:12.431][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-22 18:26:12.431][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:12.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:12.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:12.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:12.432][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:12.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:12.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:12.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:12.434][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:12.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:12.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:12.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-22 18:26:12.435][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-22 18:26:12.435][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-22 18:26:12.435][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-22 18:26:12.437][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-22 18:26:12.437][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-22 18:26:12.437][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-22 18:26:12.438][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-22 18:26:12.438][private$loadEntries] Creating entries from ids [1]: "209892".
biodb.DEBUG[2025-09-22 18:26:12.438][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-09-22 18:26:12.439][cch$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-09-22 18:26:12.440][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/209892.xml.
biodb.DEBUG[2025-09-22 18:26:12.441][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-09-22 18:26:12.441][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-09-22 18:26:12.441][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-09-22 18:26:12.442][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-22 18:26:12.442][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-22 18:26:12.442][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-22 18:26:12.444][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-22 18:26:12.444][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-22 18:26:12.445][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-22 18:26:12.445][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-22 18:26:12.446][ef$get] Asked field names are: accession.
biodb.TRACE[2025-09-22 18:26:12.446][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-22 18:26:12.446][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:12.447][ef$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:12.447][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-22 18:26:12.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-22 18:26:12.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:12.448][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:12.448][ef$get] Asked field names are: charge.
biodb.TRACE[2025-09-22 18:26:12.448][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-09-22 18:26:12.449][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:12.449][ef$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:12.449][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-09-22 18:26:12.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-09-22 18:26:12.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:12.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:12.450][ef$get] Asked field names are: formula.
biodb.TRACE[2025-09-22 18:26:12.451][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-22 18:26:12.451][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:12.451][ef$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:12.452][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-09-22 18:26:12.452][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-22 18:26:12.452][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:12.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:12.453][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-09-22 18:26:12.453][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-22 18:26:12.453][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:12.454][ef$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:12.454][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-09-22 18:26:12.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-22 18:26:12.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:12.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:12.455][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-22 18:26:12.455][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-22 18:26:12.456][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:12.456][ef$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:12.456][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-22 18:26:12.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-22 18:26:12.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:12.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:12.457][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-09-22 18:26:12.458][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-09-22 18:26:12.458][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:12.458][ef$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:12.458][ef$get] Asked field names are: mass.
biodb.TRACE[2025-09-22 18:26:12.459][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:12.459][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:12.459][ef$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:12.459][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-09-22 18:26:12.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:12.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:12.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:12.461][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:12.461][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:12.461][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:12.461][ef$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:12.462][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:12.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:12.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:12.462][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:12.463][ef$get] Asked field names are: name.
biodb.TRACE[2025-09-22 18:26:12.463][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-09-22 18:26:12.463][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:12.464][ef$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:12.464][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-22 18:26:12.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-22 18:26:12.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:12.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:12.468][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-09-22 18:26:12.468][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-09-22 18:26:12.469][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:12.469][ef$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:12.469][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-09-22 18:26:12.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-09-22 18:26:12.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:12.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:12.470][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-09-22 18:26:12.471][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-22 18:26:12.471][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:12.471][ef$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:12.472][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-09-22 18:26:12.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-22 18:26:12.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:12.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:12.473][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-22 18:26:12.473][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-22 18:26:12.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:12.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:12.474][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-22 18:26:12.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-22 18:26:12.474][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:12.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:12.475][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-22 18:26:12.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-22 18:26:12.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:12.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:12.476][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-22 18:26:12.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-22 18:26:12.477][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:12.477][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:12.477][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-22 18:26:12.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-22 18:26:12.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:12.478][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:12.478][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-22 18:26:12.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-22 18:26:12.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:12.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:12.479][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-22 18:26:12.480][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-22 18:26:12.480][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:12.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:12.480][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-22 18:26:12.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-22 18:26:12.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:12.481][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:12.482][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-22 18:26:12.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-22 18:26:12.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:12.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:12.483][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-22 18:26:12.483][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-22 18:26:12.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:12.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-22 18:26:12.484][self$createEntryFromContent] Accession numbers: 209892.
biodb.TRACE[2025-09-22 18:26:12.484][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:12.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:12.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:12.485][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:12.485][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:12.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:12.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:12.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:12.486][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:12.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:12.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:12.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
sched.DEBUG[2025-09-22 18:26:12.494][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-09-22 18:26:12.495][private$cache$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/sched.
fscache.DEBUG[2025-09-22 18:26:12.496][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/sched/80cdc67a2a6332dd4ceb98b7656194b9.content.
sched.DEBUG[2025-09-22 18:26:12.497][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-09-22 18:26:12.498][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-22 18:26:12.498][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-22 18:26:12.498][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-22 18:26:12.500][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-22 18:26:12.501][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-22 18:26:12.501][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-22 18:26:12.501][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-22 18:26:12.502][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:12.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:12.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:12.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:12.503][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:12.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:12.503][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:12.504][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:12.504][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:12.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:12.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:12.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-22 18:26:12.505][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-22 18:26:12.505][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-22 18:26:12.506][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-22 18:26:12.508][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-22 18:26:12.508][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-22 18:26:12.508][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-22 18:26:12.511][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-22 18:26:12.511][private$loadEntries] Creating entries from ids [1]: "26747".
biodb.DEBUG[2025-09-22 18:26:12.512][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-09-22 18:26:12.512][cch$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-09-22 18:26:12.513][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/26747.xml.
biodb.DEBUG[2025-09-22 18:26:12.514][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-09-22 18:26:12.514][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-09-22 18:26:12.514][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-09-22 18:26:12.515][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-22 18:26:12.515][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-22 18:26:12.515][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-22 18:26:12.517][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-22 18:26:12.517][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-22 18:26:12.517][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-22 18:26:12.518][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-22 18:26:12.519][ef$get] Asked field names are: accession.
biodb.TRACE[2025-09-22 18:26:12.519][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-22 18:26:12.519][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:12.520][ef$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:12.520][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-22 18:26:12.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-22 18:26:12.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:12.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:12.521][ef$get] Asked field names are: charge.
biodb.TRACE[2025-09-22 18:26:12.521][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-09-22 18:26:12.522][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:12.522][ef$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:12.522][ef$get] Asked field names are: formula.
biodb.TRACE[2025-09-22 18:26:12.522][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-22 18:26:12.523][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:12.523][ef$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:12.523][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-09-22 18:26:12.524][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-22 18:26:12.524][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:12.524][ef$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:12.524][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-22 18:26:12.525][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-22 18:26:12.525][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:12.525][ef$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:12.525][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-09-22 18:26:12.526][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-09-22 18:26:12.526][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:12.526][ef$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:12.527][ef$get] Asked field names are: mass.
biodb.TRACE[2025-09-22 18:26:12.527][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:12.527][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:12.527][ef$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:12.528][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:12.528][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:12.528][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:12.528][ef$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:12.529][ef$get] Asked field names are: name.
biodb.TRACE[2025-09-22 18:26:12.529][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-09-22 18:26:12.529][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:12.530][ef$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:12.530][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-22 18:26:12.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-22 18:26:12.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:12.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:12.531][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-09-22 18:26:12.531][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-09-22 18:26:12.532][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:12.532][ef$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:12.532][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-09-22 18:26:12.532][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-09-22 18:26:12.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:12.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:12.533][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-09-22 18:26:12.533][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-22 18:26:12.534][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:12.534][ef$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:12.534][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-22 18:26:12.535][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-22 18:26:12.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:12.535][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:12.535][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-22 18:26:12.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-22 18:26:12.536][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:12.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:12.536][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-22 18:26:12.537][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-22 18:26:12.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:12.537][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:12.537][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-22 18:26:12.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-22 18:26:12.538][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:12.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:12.538][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-22 18:26:12.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-22 18:26:12.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:12.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:12.539][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-22 18:26:12.540][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-22 18:26:12.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:12.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:12.540][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-22 18:26:12.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-22 18:26:12.541][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:12.541][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:12.542][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-22 18:26:12.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-22 18:26:12.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:12.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:12.543][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-22 18:26:12.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-22 18:26:12.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:12.543][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:12.544][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-22 18:26:12.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-22 18:26:12.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:12.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-22 18:26:12.545][self$createEntryFromContent] Accession numbers: 26747.
biodb.TRACE[2025-09-22 18:26:12.545][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:12.545][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:12.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:12.546][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:12.548][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:12.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:12.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:12.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:12.549][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:12.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:12.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:12.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:12.550][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:12.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:12.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:12.551][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:12.552][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:12.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:12.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:12.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-22 18:26:12.553][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-22 18:26:12.553][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-22 18:26:12.553][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-22 18:26:12.555][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-22 18:26:12.555][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-22 18:26:12.555][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-22 18:26:12.556][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-22 18:26:12.556][private$loadEntries] Creating entries from ids [1]: "59285".
biodb.DEBUG[2025-09-22 18:26:12.556][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-09-22 18:26:12.557][cch$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-09-22 18:26:12.558][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/59285.xml.
biodb.DEBUG[2025-09-22 18:26:12.559][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-09-22 18:26:12.559][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-09-22 18:26:12.559][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-09-22 18:26:12.560][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-22 18:26:12.560][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-22 18:26:12.560][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-22 18:26:12.562][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-22 18:26:12.562][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-22 18:26:12.563][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-22 18:26:12.563][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-22 18:26:12.563][ef$get] Asked field names are: accession.
biodb.TRACE[2025-09-22 18:26:12.564][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-22 18:26:12.564][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:12.564][ef$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:12.565][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-22 18:26:12.565][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-22 18:26:12.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:12.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:12.566][ef$get] Asked field names are: charge.
biodb.TRACE[2025-09-22 18:26:12.566][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-09-22 18:26:12.566][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:12.567][ef$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:12.567][ef$get] Asked field names are: formula.
biodb.TRACE[2025-09-22 18:26:12.567][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-22 18:26:12.567][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:12.568][ef$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:12.568][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-09-22 18:26:12.568][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-22 18:26:12.569][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:12.569][ef$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:12.569][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-22 18:26:12.569][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-22 18:26:12.570][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:12.570][ef$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:12.570][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-09-22 18:26:12.570][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-09-22 18:26:12.571][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:12.571][ef$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:12.571][ef$get] Asked field names are: mass.
biodb.TRACE[2025-09-22 18:26:12.572][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:12.572][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:12.572][ef$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:12.572][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:12.573][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:12.573][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:12.573][ef$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:12.573][ef$get] Asked field names are: name.
biodb.TRACE[2025-09-22 18:26:12.574][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-09-22 18:26:12.574][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:12.574][ef$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:12.575][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-22 18:26:12.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-22 18:26:12.575][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:12.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:12.576][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-09-22 18:26:12.576][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-09-22 18:26:12.576][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:12.577][ef$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:12.577][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-09-22 18:26:12.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-09-22 18:26:12.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:12.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:12.578][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-09-22 18:26:12.578][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-22 18:26:12.578][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:12.579][ef$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:12.579][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-22 18:26:12.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-22 18:26:12.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:12.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:12.580][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-22 18:26:12.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-22 18:26:12.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:12.581][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:12.581][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-22 18:26:12.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-22 18:26:12.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:12.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:12.582][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-22 18:26:12.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-22 18:26:12.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:12.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:12.583][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-22 18:26:12.583][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-22 18:26:12.584][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:12.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:12.587][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-22 18:26:12.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-22 18:26:12.587][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:12.588][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:12.588][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-22 18:26:12.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-22 18:26:12.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:12.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:12.589][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-22 18:26:12.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-22 18:26:12.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:12.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:12.590][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-22 18:26:12.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-22 18:26:12.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:12.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:12.591][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-22 18:26:12.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-22 18:26:12.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:12.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-22 18:26:12.592][self$createEntryFromContent] Accession numbers: 59285.
biodb.TRACE[2025-09-22 18:26:12.592][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:12.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:12.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:12.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:12.593][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:12.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:12.594][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:12.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:12.594][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:12.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:12.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:12.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:12.596][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:12.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:12.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:12.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:12.597][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:12.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:12.597][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:12.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-22 18:26:12.598][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-22 18:26:12.598][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-22 18:26:12.598][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-22 18:26:12.600][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-22 18:26:12.600][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-22 18:26:12.600][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-22 18:26:12.601][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-22 18:26:12.601][private$loadEntries] Creating entries from ids [1]: "75174".
biodb.DEBUG[2025-09-22 18:26:12.601][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-09-22 18:26:12.602][cch$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-09-22 18:26:12.603][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/75174.xml.
biodb.DEBUG[2025-09-22 18:26:12.604][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-09-22 18:26:12.604][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-09-22 18:26:12.604][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-09-22 18:26:12.605][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-22 18:26:12.605][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-22 18:26:12.605][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-22 18:26:12.607][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-22 18:26:12.607][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-22 18:26:12.608][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-22 18:26:12.608][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-22 18:26:12.609][ef$get] Asked field names are: accession.
biodb.TRACE[2025-09-22 18:26:12.609][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-22 18:26:12.609][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:12.610][ef$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:12.610][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-22 18:26:12.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-22 18:26:12.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:12.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:12.611][ef$get] Asked field names are: charge.
biodb.TRACE[2025-09-22 18:26:12.611][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-09-22 18:26:12.612][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:12.612][ef$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:12.612][ef$get] Asked field names are: formula.
biodb.TRACE[2025-09-22 18:26:12.612][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-22 18:26:12.613][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:12.613][ef$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:12.613][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-09-22 18:26:12.614][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-22 18:26:12.614][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:12.614][ef$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:12.614][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-22 18:26:12.615][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-22 18:26:12.615][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:12.615][ef$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:12.616][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-09-22 18:26:12.616][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-09-22 18:26:12.616][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:12.616][ef$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:12.617][ef$get] Asked field names are: mass.
biodb.TRACE[2025-09-22 18:26:12.617][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:12.617][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:12.617][ef$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:12.618][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:12.618][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:12.618][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:12.618][ef$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:12.619][ef$get] Asked field names are: name.
biodb.TRACE[2025-09-22 18:26:12.619][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-09-22 18:26:12.619][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:12.620][ef$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:12.620][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-22 18:26:12.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-22 18:26:12.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:12.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:12.621][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-09-22 18:26:12.621][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-09-22 18:26:12.622][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:12.622][ef$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:12.622][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-09-22 18:26:12.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-09-22 18:26:12.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:12.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:12.626][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-09-22 18:26:12.626][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-22 18:26:12.626][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:12.627][ef$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:12.627][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-22 18:26:12.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-22 18:26:12.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:12.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:12.628][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-22 18:26:12.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-22 18:26:12.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:12.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:12.629][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-22 18:26:12.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-22 18:26:12.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:12.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:12.630][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-22 18:26:12.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-22 18:26:12.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:12.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:12.631][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-22 18:26:12.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-22 18:26:12.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:12.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:12.632][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-22 18:26:12.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-22 18:26:12.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:12.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:12.633][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-22 18:26:12.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-22 18:26:12.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:12.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:12.634][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-22 18:26:12.635][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-22 18:26:12.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:12.635][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:12.636][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-22 18:26:12.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-22 18:26:12.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:12.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:12.637][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-22 18:26:12.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-22 18:26:12.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:12.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-22 18:26:12.638][self$createEntryFromContent] Accession numbers: 75174.
biodb.TRACE[2025-09-22 18:26:12.638][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:12.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:12.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:12.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:12.639][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:12.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:12.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:12.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:12.640][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:12.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:12.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:12.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:12.641][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:12.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:12.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:12.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:12.642][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:12.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:12.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:12.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-22 18:26:12.643][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-22 18:26:12.644][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-22 18:26:12.644][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-22 18:26:12.646][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-22 18:26:12.646][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-22 18:26:12.646][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-22 18:26:12.646][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-22 18:26:12.647][private$loadEntries] Creating entries from ids [1]: "15441".
biodb.DEBUG[2025-09-22 18:26:12.647][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-09-22 18:26:12.647][cch$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-09-22 18:26:12.649][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/15441.xml.
biodb.DEBUG[2025-09-22 18:26:12.650][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-09-22 18:26:12.650][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-09-22 18:26:12.651][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-09-22 18:26:12.651][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-22 18:26:12.651][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-22 18:26:12.652][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-22 18:26:12.653][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-22 18:26:12.654][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-22 18:26:12.654][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-22 18:26:12.654][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-22 18:26:12.655][ef$get] Asked field names are: accession.
biodb.TRACE[2025-09-22 18:26:12.655][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-22 18:26:12.656][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:12.656][ef$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:12.656][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-22 18:26:12.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-22 18:26:12.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:12.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:12.657][ef$get] Asked field names are: charge.
biodb.TRACE[2025-09-22 18:26:12.658][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-09-22 18:26:12.658][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:12.658][ef$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:12.659][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-09-22 18:26:12.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-09-22 18:26:12.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:12.659][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:12.660][ef$get] Asked field names are: formula.
biodb.TRACE[2025-09-22 18:26:12.660][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-22 18:26:12.660][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:12.660][ef$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:12.661][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-09-22 18:26:12.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-22 18:26:12.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:12.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:12.665][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-09-22 18:26:12.665][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-22 18:26:12.665][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:12.665][ef$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:12.666][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-09-22 18:26:12.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-22 18:26:12.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:12.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:12.667][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-22 18:26:12.667][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-22 18:26:12.667][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:12.668][ef$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:12.668][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-22 18:26:12.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-22 18:26:12.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:12.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:12.669][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-09-22 18:26:12.669][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-09-22 18:26:12.670][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:12.670][ef$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:12.670][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-09-22 18:26:12.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-09-22 18:26:12.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:12.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:12.671][ef$get] Asked field names are: mass.
biodb.TRACE[2025-09-22 18:26:12.672][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:12.672][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:12.672][ef$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:12.673][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-09-22 18:26:12.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:12.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:12.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:12.674][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:12.674][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:12.674][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:12.675][ef$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:12.675][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:12.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:12.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:12.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:12.676][ef$get] Asked field names are: name.
biodb.TRACE[2025-09-22 18:26:12.676][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-09-22 18:26:12.676][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:12.677][ef$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:12.677][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-22 18:26:12.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-22 18:26:12.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:12.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:12.678][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-09-22 18:26:12.679][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-09-22 18:26:12.679][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:12.679][ef$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:12.679][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-09-22 18:26:12.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-09-22 18:26:12.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:12.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:12.681][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-09-22 18:26:12.681][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-22 18:26:12.681][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:12.681][ef$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:12.682][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-09-22 18:26:12.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-22 18:26:12.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:12.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:12.683][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-22 18:26:12.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-22 18:26:12.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:12.684][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:12.684][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-22 18:26:12.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-22 18:26:12.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:12.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:12.685][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-22 18:26:12.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-22 18:26:12.686][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:12.686][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:12.686][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-22 18:26:12.686][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-22 18:26:12.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:12.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:12.687][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-22 18:26:12.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-22 18:26:12.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:12.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:12.688][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-22 18:26:12.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-22 18:26:12.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:12.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:12.689][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-22 18:26:12.690][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-22 18:26:12.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:12.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:12.690][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-22 18:26:12.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-22 18:26:12.691][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:12.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:12.692][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-22 18:26:12.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-22 18:26:12.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:12.692][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:12.693][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-22 18:26:12.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-22 18:26:12.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:12.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-22 18:26:12.694][self$createEntryFromContent] Accession numbers: 15441.
biodb.TRACE[2025-09-22 18:26:12.694][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:12.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:12.695][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:12.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:12.695][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:12.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:12.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:12.696][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:12.696][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:12.696][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:12.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:12.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-22 18:26:12.697][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-22 18:26:12.697][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-22 18:26:12.698][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-22 18:26:12.702][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-22 18:26:12.702][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-22 18:26:12.703][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-22 18:26:12.703][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-22 18:26:12.703][private$loadEntries] Creating entries from ids [1]: "15442".
biodb.DEBUG[2025-09-22 18:26:12.703][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-09-22 18:26:12.704][cch$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-09-22 18:26:12.706][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/15442.xml.
biodb.DEBUG[2025-09-22 18:26:12.706][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-09-22 18:26:12.706][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-09-22 18:26:12.707][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-09-22 18:26:12.707][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-22 18:26:12.708][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-22 18:26:12.708][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-22 18:26:12.709][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-22 18:26:12.710][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-22 18:26:12.710][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-22 18:26:12.710][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-22 18:26:12.711][ef$get] Asked field names are: accession.
biodb.TRACE[2025-09-22 18:26:12.711][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-22 18:26:12.712][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:12.712][ef$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:12.712][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-22 18:26:12.713][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-22 18:26:12.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:12.713][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:12.713][ef$get] Asked field names are: charge.
biodb.TRACE[2025-09-22 18:26:12.714][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-09-22 18:26:12.714][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:12.714][ef$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:12.715][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-09-22 18:26:12.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-09-22 18:26:12.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:12.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:12.716][ef$get] Asked field names are: formula.
biodb.TRACE[2025-09-22 18:26:12.716][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-22 18:26:12.716][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:12.717][ef$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:12.717][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-09-22 18:26:12.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-22 18:26:12.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:12.718][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:12.718][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-09-22 18:26:12.718][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-22 18:26:12.719][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:12.719][ef$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:12.719][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-09-22 18:26:12.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-22 18:26:12.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:12.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:12.720][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-22 18:26:12.721][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-22 18:26:12.721][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:12.721][ef$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:12.721][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-22 18:26:12.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-22 18:26:12.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:12.722][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:12.723][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-09-22 18:26:12.723][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-09-22 18:26:12.723][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:12.723][ef$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:12.724][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-09-22 18:26:12.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-09-22 18:26:12.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:12.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:12.725][ef$get] Asked field names are: mass.
biodb.TRACE[2025-09-22 18:26:12.725][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:12.725][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:12.726][ef$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:12.726][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-09-22 18:26:12.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:12.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:12.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:12.727][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:12.727][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:12.727][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:12.728][ef$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:12.728][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:12.728][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:12.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:12.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:12.729][ef$get] Asked field names are: name.
biodb.TRACE[2025-09-22 18:26:12.729][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-09-22 18:26:12.730][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:12.730][ef$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:12.730][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-22 18:26:12.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-22 18:26:12.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:12.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:12.731][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-09-22 18:26:12.732][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-09-22 18:26:12.732][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:12.732][ef$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:12.732][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-09-22 18:26:12.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-09-22 18:26:12.733][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:12.733][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:12.734][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-09-22 18:26:12.734][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-22 18:26:12.734][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:12.734][ef$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:12.735][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-09-22 18:26:12.735][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-22 18:26:12.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:12.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:12.736][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-22 18:26:12.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-22 18:26:12.736][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:12.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:12.737][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-22 18:26:12.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-22 18:26:12.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:12.740][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:12.740][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-22 18:26:12.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-22 18:26:12.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:12.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:12.741][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-22 18:26:12.742][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-22 18:26:12.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:12.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:12.742][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-22 18:26:12.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-22 18:26:12.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:12.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:12.743][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-22 18:26:12.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-22 18:26:12.744][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:12.744][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:12.745][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-22 18:26:12.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-22 18:26:12.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:12.745][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:12.746][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-22 18:26:12.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-22 18:26:12.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:12.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:12.747][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-22 18:26:12.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-22 18:26:12.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:12.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:12.748][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-22 18:26:12.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-22 18:26:12.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:12.749][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-22 18:26:12.749][self$createEntryFromContent] Accession numbers: 15442.
biodb.TRACE[2025-09-22 18:26:12.749][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:12.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:12.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:12.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:12.750][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:12.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:12.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:12.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:12.751][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:12.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:12.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:12.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-22 18:26:12.753][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-22 18:26:12.753][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-22 18:26:12.753][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-22 18:26:12.756][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-22 18:26:12.757][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-22 18:26:12.757][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-22 18:26:12.757][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-22 18:26:12.757][private$loadEntries] Creating entries from ids [1]: "57310".
biodb.DEBUG[2025-09-22 18:26:12.758][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-09-22 18:26:12.758][cch$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-09-22 18:26:12.760][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/57310.xml.
biodb.DEBUG[2025-09-22 18:26:12.760][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-09-22 18:26:12.761][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-09-22 18:26:12.761][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-09-22 18:26:12.761][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-22 18:26:12.762][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-22 18:26:12.762][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-22 18:26:12.764][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-22 18:26:12.764][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-22 18:26:12.764][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-22 18:26:12.764][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-22 18:26:12.765][ef$get] Asked field names are: accession.
biodb.TRACE[2025-09-22 18:26:12.766][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-22 18:26:12.766][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:12.766][ef$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:12.766][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-22 18:26:12.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-22 18:26:12.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:12.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:12.768][ef$get] Asked field names are: charge.
biodb.TRACE[2025-09-22 18:26:12.768][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-09-22 18:26:12.768][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:12.768][ef$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:12.769][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-09-22 18:26:12.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-09-22 18:26:12.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:12.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:12.770][ef$get] Asked field names are: formula.
biodb.TRACE[2025-09-22 18:26:12.770][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-22 18:26:12.770][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:12.771][ef$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:12.771][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-09-22 18:26:12.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-22 18:26:12.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:12.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:12.772][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-09-22 18:26:12.772][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-22 18:26:12.772][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:12.773][ef$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:12.773][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-09-22 18:26:12.773][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-22 18:26:12.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:12.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:12.774][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-22 18:26:12.774][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-22 18:26:12.775][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:12.775][ef$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:12.775][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-22 18:26:12.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-22 18:26:12.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:12.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:12.776][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-09-22 18:26:12.776][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-09-22 18:26:12.777][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:12.781][ef$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:12.782][ef$get] Asked field names are: mass.
biodb.TRACE[2025-09-22 18:26:12.782][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:12.782][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:12.782][ef$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:12.783][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-09-22 18:26:12.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:12.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:12.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:12.784][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:12.784][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:12.784][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:12.785][ef$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:12.785][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:12.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:12.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:12.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:12.786][ef$get] Asked field names are: name.
biodb.TRACE[2025-09-22 18:26:12.786][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-09-22 18:26:12.787][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:12.787][ef$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:12.787][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-22 18:26:12.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-22 18:26:12.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:12.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:12.788][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-09-22 18:26:12.789][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-09-22 18:26:12.789][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:12.789][ef$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:12.790][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-09-22 18:26:12.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-09-22 18:26:12.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:12.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:12.791][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-09-22 18:26:12.791][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-22 18:26:12.791][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:12.791][ef$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:12.792][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-09-22 18:26:12.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-22 18:26:12.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:12.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:12.793][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-22 18:26:12.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-22 18:26:12.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:12.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:12.794][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-22 18:26:12.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-22 18:26:12.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:12.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:12.795][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-22 18:26:12.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-22 18:26:12.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:12.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:12.796][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-22 18:26:12.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-22 18:26:12.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:12.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:12.797][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-22 18:26:12.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-22 18:26:12.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:12.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:12.798][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-22 18:26:12.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-22 18:26:12.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:12.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:12.799][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-22 18:26:12.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-22 18:26:12.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:12.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:12.800][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-22 18:26:12.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-22 18:26:12.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:12.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:12.801][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-22 18:26:12.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-22 18:26:12.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:12.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:12.803][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-22 18:26:12.803][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-22 18:26:12.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:12.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-22 18:26:12.804][self$createEntryFromContent] Accession numbers: 57310.
biodb.TRACE[2025-09-22 18:26:12.804][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:12.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:12.804][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:12.805][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:12.805][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:12.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:12.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:12.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:12.806][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:12.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:12.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:12.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-22 18:26:12.807][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-22 18:26:12.807][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-22 18:26:12.808][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-22 18:26:12.810][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-22 18:26:12.810][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-22 18:26:12.810][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-22 18:26:12.810][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-22 18:26:12.811][private$loadEntries] Creating entries from ids [1]: "66216".
biodb.DEBUG[2025-09-22 18:26:12.811][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-09-22 18:26:12.811][cch$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-09-22 18:26:12.813][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/66216.xml.
biodb.DEBUG[2025-09-22 18:26:12.813][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-09-22 18:26:12.814][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-09-22 18:26:12.814][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-09-22 18:26:12.815][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-22 18:26:12.815][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-22 18:26:12.815][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-22 18:26:12.817][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-22 18:26:12.817][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-22 18:26:12.826][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-22 18:26:12.826][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-22 18:26:12.828][ef$get] Asked field names are: accession.
biodb.TRACE[2025-09-22 18:26:12.828][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-22 18:26:12.828][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:12.829][ef$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:12.829][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-22 18:26:12.829][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-22 18:26:12.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:12.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:12.830][ef$get] Asked field names are: charge.
biodb.TRACE[2025-09-22 18:26:12.830][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-09-22 18:26:12.831][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:12.831][ef$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:12.831][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-09-22 18:26:12.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-09-22 18:26:12.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:12.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:12.832][ef$get] Asked field names are: formula.
biodb.TRACE[2025-09-22 18:26:12.833][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-22 18:26:12.833][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:12.833][ef$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:12.833][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-09-22 18:26:12.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-22 18:26:12.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:12.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:12.835][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-09-22 18:26:12.835][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-22 18:26:12.835][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:12.835][ef$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:12.836][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-09-22 18:26:12.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-22 18:26:12.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:12.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:12.837][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-22 18:26:12.837][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-22 18:26:12.837][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:12.838][ef$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:12.838][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-22 18:26:12.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-22 18:26:12.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:12.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:12.839][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-09-22 18:26:12.839][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-09-22 18:26:12.840][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:12.840][ef$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:12.840][ef$get] Asked field names are: mass.
biodb.TRACE[2025-09-22 18:26:12.840][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:12.841][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:12.841][ef$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:12.841][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-09-22 18:26:12.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:12.842][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:12.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:12.842][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:12.843][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:12.843][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:12.843][ef$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:12.843][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:12.844][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:12.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:12.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:12.845][ef$get] Asked field names are: name.
biodb.TRACE[2025-09-22 18:26:12.845][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-09-22 18:26:12.845][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:12.845][ef$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:12.846][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-22 18:26:12.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-22 18:26:12.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:12.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:12.847][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-09-22 18:26:12.847][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-09-22 18:26:12.847][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:12.848][ef$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:12.848][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-09-22 18:26:12.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-09-22 18:26:12.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:12.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:12.849][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-09-22 18:26:12.849][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-22 18:26:12.849][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:12.850][ef$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:12.850][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-09-22 18:26:12.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-22 18:26:12.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:12.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:12.851][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-22 18:26:12.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-22 18:26:12.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:12.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:12.852][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-22 18:26:12.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-22 18:26:12.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:12.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:12.853][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-22 18:26:12.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-22 18:26:12.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:12.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:12.854][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-22 18:26:12.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-22 18:26:12.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:12.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:12.855][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-22 18:26:12.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-22 18:26:12.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:12.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:12.856][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-22 18:26:12.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-22 18:26:12.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:12.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:12.857][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-22 18:26:12.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-22 18:26:12.858][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:12.858][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:12.858][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-22 18:26:12.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-22 18:26:12.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:12.859][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:12.859][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-22 18:26:12.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-22 18:26:12.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:12.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:12.863][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-22 18:26:12.863][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-22 18:26:12.864][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:12.864][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-22 18:26:12.865][self$createEntryFromContent] Accession numbers: 66216.
biodb.TRACE[2025-09-22 18:26:12.865][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:12.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:12.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:12.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:12.866][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:12.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:12.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:12.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:12.868][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:12.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:12.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:12.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-22 18:26:12.869][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-22 18:26:12.869][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-22 18:26:12.869][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-22 18:26:12.871][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-22 18:26:12.871][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-22 18:26:12.872][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-22 18:26:12.872][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-22 18:26:12.872][private$loadEntries] Creating entries from ids [1]: "70860".
biodb.DEBUG[2025-09-22 18:26:12.872][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-09-22 18:26:12.873][cch$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-09-22 18:26:12.875][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/70860.xml.
biodb.DEBUG[2025-09-22 18:26:12.875][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-09-22 18:26:12.876][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-09-22 18:26:12.876][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-09-22 18:26:12.877][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-22 18:26:12.877][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-22 18:26:12.877][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-22 18:26:12.879][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-22 18:26:12.879][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-22 18:26:12.879][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-22 18:26:12.879][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-22 18:26:12.880][ef$get] Asked field names are: accession.
biodb.TRACE[2025-09-22 18:26:12.881][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-22 18:26:12.881][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:12.881][ef$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:12.881][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-22 18:26:12.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-22 18:26:12.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:12.882][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:12.883][ef$get] Asked field names are: charge.
biodb.TRACE[2025-09-22 18:26:12.883][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-09-22 18:26:12.883][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:12.883][ef$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:12.884][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-09-22 18:26:12.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-09-22 18:26:12.884][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:12.885][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:12.885][ef$get] Asked field names are: formula.
biodb.TRACE[2025-09-22 18:26:12.885][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-22 18:26:12.885][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:12.886][ef$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:12.886][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-09-22 18:26:12.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-22 18:26:12.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:12.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:12.887][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-09-22 18:26:12.887][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-22 18:26:12.888][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:12.888][ef$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:12.888][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-09-22 18:26:12.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-22 18:26:12.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:12.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:12.889][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-22 18:26:12.889][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-22 18:26:12.890][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:12.890][ef$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:12.890][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-22 18:26:12.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-22 18:26:12.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:12.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:12.891][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-09-22 18:26:12.892][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-09-22 18:26:12.892][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:12.892][ef$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:12.892][ef$get] Asked field names are: mass.
biodb.TRACE[2025-09-22 18:26:12.893][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:12.893][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:12.893][ef$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:12.894][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-09-22 18:26:12.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:12.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:12.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:12.895][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:12.895][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:12.895][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:12.895][ef$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:12.896][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:12.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:12.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:12.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:12.897][ef$get] Asked field names are: name.
biodb.TRACE[2025-09-22 18:26:12.897][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-09-22 18:26:12.897][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:12.898][ef$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:12.898][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-22 18:26:12.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-22 18:26:12.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:12.899][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:12.899][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-09-22 18:26:12.899][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-09-22 18:26:12.900][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:12.900][ef$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:12.900][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-09-22 18:26:12.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-09-22 18:26:12.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:12.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:12.904][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-09-22 18:26:12.904][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-22 18:26:12.905][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:12.905][ef$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:12.906][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-09-22 18:26:12.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-22 18:26:12.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:12.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:12.907][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-22 18:26:12.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-22 18:26:12.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:12.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:12.908][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-22 18:26:12.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-22 18:26:12.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:12.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:12.909][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-22 18:26:12.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-22 18:26:12.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:12.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:12.910][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-22 18:26:12.910][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-22 18:26:12.911][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:12.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:12.911][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-22 18:26:12.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-22 18:26:12.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:12.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:12.912][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-22 18:26:12.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-22 18:26:12.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:12.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:12.913][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-22 18:26:12.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-22 18:26:12.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:12.914][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:12.915][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-22 18:26:12.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-22 18:26:12.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:12.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:12.916][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-22 18:26:12.916][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-22 18:26:12.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:12.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:12.917][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-22 18:26:12.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-22 18:26:12.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:12.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-22 18:26:12.918][self$createEntryFromContent] Accession numbers: 70860.
biodb.TRACE[2025-09-22 18:26:12.918][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:12.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:12.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:12.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:12.919][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:12.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:12.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:12.920][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:12.920][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:12.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:12.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:12.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-22 18:26:12.921][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-22 18:26:12.921][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-22 18:26:12.922][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-22 18:26:12.924][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-22 18:26:12.924][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-22 18:26:12.924][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-22 18:26:12.924][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-22 18:26:12.925][private$loadEntries] Creating entries from ids [1]: "70861".
biodb.DEBUG[2025-09-22 18:26:12.925][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-09-22 18:26:12.925][cch$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-09-22 18:26:12.927][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/70861.xml.
biodb.DEBUG[2025-09-22 18:26:12.927][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-09-22 18:26:12.928][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-09-22 18:26:12.928][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-09-22 18:26:12.928][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-22 18:26:12.929][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-22 18:26:12.929][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-22 18:26:12.931][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-22 18:26:12.931][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-22 18:26:12.931][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-22 18:26:12.932][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-22 18:26:12.932][ef$get] Asked field names are: accession.
biodb.TRACE[2025-09-22 18:26:12.933][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-22 18:26:12.933][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:12.933][ef$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:12.934][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-22 18:26:12.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-22 18:26:12.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:12.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:12.935][ef$get] Asked field names are: charge.
biodb.TRACE[2025-09-22 18:26:12.935][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-09-22 18:26:12.935][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:12.935][ef$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:12.936][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-09-22 18:26:12.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-09-22 18:26:12.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:12.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:12.937][ef$get] Asked field names are: formula.
biodb.TRACE[2025-09-22 18:26:12.937][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-22 18:26:12.937][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:12.938][ef$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:12.938][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-09-22 18:26:12.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-22 18:26:12.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:12.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:12.939][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-09-22 18:26:12.939][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-22 18:26:12.940][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:12.940][ef$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:12.940][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-09-22 18:26:12.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-22 18:26:12.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:12.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:12.944][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-22 18:26:12.944][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-22 18:26:12.945][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:12.945][ef$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:12.945][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-22 18:26:12.946][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-22 18:26:12.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:12.946][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:12.947][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-09-22 18:26:12.947][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-09-22 18:26:12.947][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:12.947][ef$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:12.948][ef$get] Asked field names are: mass.
biodb.TRACE[2025-09-22 18:26:12.948][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:12.948][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:12.948][ef$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:12.949][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-09-22 18:26:12.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:12.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:12.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:12.950][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:12.950][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:12.950][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:12.951][ef$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:12.951][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:12.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:12.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:12.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:12.952][ef$get] Asked field names are: name.
biodb.TRACE[2025-09-22 18:26:12.952][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-09-22 18:26:12.953][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:12.953][ef$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:12.953][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-22 18:26:12.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-22 18:26:12.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:12.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:12.954][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-09-22 18:26:12.955][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-09-22 18:26:12.955][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:12.955][ef$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:12.955][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-09-22 18:26:12.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-09-22 18:26:12.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:12.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:12.956][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-09-22 18:26:12.957][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-22 18:26:12.957][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:12.957][ef$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:12.958][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-09-22 18:26:12.958][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-22 18:26:12.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:12.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:12.959][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-22 18:26:12.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-22 18:26:12.959][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:12.959][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:12.960][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-22 18:26:12.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-22 18:26:12.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:12.960][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:12.961][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-22 18:26:12.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-22 18:26:12.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:12.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:12.962][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-22 18:26:12.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-22 18:26:12.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:12.963][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:12.963][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-22 18:26:12.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-22 18:26:12.963][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:12.964][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:12.964][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-22 18:26:12.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-22 18:26:12.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:12.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:12.965][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-22 18:26:12.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-22 18:26:12.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:12.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:12.966][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-22 18:26:12.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-22 18:26:12.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:12.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:12.967][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-22 18:26:12.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-22 18:26:12.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:12.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:12.968][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-22 18:26:12.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-22 18:26:12.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:12.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-22 18:26:12.969][self$createEntryFromContent] Accession numbers: 70861.
biodb.TRACE[2025-09-22 18:26:12.969][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:12.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:12.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:12.970][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:12.970][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:12.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:12.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:12.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:12.971][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:12.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:12.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:12.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-22 18:26:12.972][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-22 18:26:12.973][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-22 18:26:12.973][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-22 18:26:12.975][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-22 18:26:12.975][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-22 18:26:12.975][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-22 18:26:12.976][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-22 18:26:12.976][private$loadEntries] Creating entries from ids [1]: "78662".
biodb.DEBUG[2025-09-22 18:26:12.976][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-09-22 18:26:12.977][cch$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-09-22 18:26:12.981][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/78662.xml.
biodb.DEBUG[2025-09-22 18:26:12.981][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-09-22 18:26:12.981][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-09-22 18:26:12.982][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-09-22 18:26:12.985][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-22 18:26:12.985][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-22 18:26:12.985][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-22 18:26:12.987][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-22 18:26:12.988][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-22 18:26:12.988][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-22 18:26:12.988][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-22 18:26:12.989][ef$get] Asked field names are: accession.
biodb.TRACE[2025-09-22 18:26:12.989][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-22 18:26:12.989][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:12.990][ef$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:12.990][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-22 18:26:12.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-22 18:26:12.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:12.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:12.991][ef$get] Asked field names are: charge.
biodb.TRACE[2025-09-22 18:26:12.992][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-09-22 18:26:12.992][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:12.992][ef$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:12.992][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-09-22 18:26:12.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-09-22 18:26:12.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:12.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:12.994][ef$get] Asked field names are: formula.
biodb.TRACE[2025-09-22 18:26:12.994][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-22 18:26:12.994][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:12.994][ef$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:12.995][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-09-22 18:26:12.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-22 18:26:12.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:12.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:12.996][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-09-22 18:26:12.996][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-22 18:26:12.996][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:12.997][ef$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:12.997][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-09-22 18:26:12.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-22 18:26:12.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:12.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:12.998][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-22 18:26:12.998][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-22 18:26:12.998][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:12.999][ef$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:12.999][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-22 18:26:12.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-22 18:26:13.000][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.000][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-09-22 18:26:13.000][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-09-22 18:26:13.001][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.001][ef$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.001][ef$get] Asked field names are: mass.
biodb.TRACE[2025-09-22 18:26:13.001][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:13.002][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.002][ef$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.002][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-09-22 18:26:13.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:13.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.003][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:13.004][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:13.004][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.004][ef$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.004][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:13.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:13.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.006][ef$get] Asked field names are: name.
biodb.TRACE[2025-09-22 18:26:13.006][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-09-22 18:26:13.006][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.006][ef$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.007][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-22 18:26:13.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-22 18:26:13.007][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.008][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-09-22 18:26:13.008][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-09-22 18:26:13.008][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.009][ef$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.009][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-09-22 18:26:13.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-09-22 18:26:13.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.010][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-09-22 18:26:13.010][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-22 18:26:13.010][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.011][ef$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.011][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-09-22 18:26:13.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-22 18:26:13.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.012][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-22 18:26:13.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-22 18:26:13.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.013][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-22 18:26:13.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-22 18:26:13.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.014][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-22 18:26:13.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-22 18:26:13.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.015][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.015][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-22 18:26:13.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-22 18:26:13.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.016][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-22 18:26:13.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-22 18:26:13.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.017][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-22 18:26:13.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-22 18:26:13.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.018][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-22 18:26:13.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-22 18:26:13.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.022][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.022][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-22 18:26:13.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-22 18:26:13.023][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.024][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-22 18:26:13.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-22 18:26:13.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.025][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-22 18:26:13.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-22 18:26:13.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-22 18:26:13.026][self$createEntryFromContent] Accession numbers: 78662.
biodb.TRACE[2025-09-22 18:26:13.026][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:13.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:13.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.027][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:13.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:13.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.028][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:13.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:13.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-22 18:26:13.030][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-22 18:26:13.030][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-22 18:26:13.030][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-22 18:26:13.032][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-22 18:26:13.032][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-22 18:26:13.032][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-22 18:26:13.033][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-22 18:26:13.033][private$loadEntries] Creating entries from ids [1]: "85084".
biodb.DEBUG[2025-09-22 18:26:13.033][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-09-22 18:26:13.034][cch$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-09-22 18:26:13.036][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/85084.xml.
biodb.DEBUG[2025-09-22 18:26:13.036][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-09-22 18:26:13.037][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-09-22 18:26:13.037][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-09-22 18:26:13.037][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-22 18:26:13.038][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-22 18:26:13.038][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-22 18:26:13.040][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-22 18:26:13.040][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-22 18:26:13.041][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-22 18:26:13.041][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-22 18:26:13.042][ef$get] Asked field names are: accession.
biodb.TRACE[2025-09-22 18:26:13.042][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-22 18:26:13.043][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.043][ef$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.043][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-22 18:26:13.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-22 18:26:13.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.044][ef$get] Asked field names are: charge.
biodb.TRACE[2025-09-22 18:26:13.045][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-09-22 18:26:13.045][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.045][ef$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.046][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-09-22 18:26:13.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-09-22 18:26:13.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.046][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.047][ef$get] Asked field names are: formula.
biodb.TRACE[2025-09-22 18:26:13.047][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-22 18:26:13.047][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.048][ef$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.048][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-09-22 18:26:13.048][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-22 18:26:13.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.049][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-09-22 18:26:13.049][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-22 18:26:13.050][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.050][ef$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.050][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-22 18:26:13.051][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-22 18:26:13.051][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.051][ef$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.052][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-09-22 18:26:13.052][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-09-22 18:26:13.052][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.052][ef$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.053][ef$get] Asked field names are: mass.
biodb.TRACE[2025-09-22 18:26:13.053][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:13.053][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.054][ef$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.054][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-09-22 18:26:13.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:13.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.055][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:13.055][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:13.056][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.056][ef$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.056][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:13.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:13.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.057][ef$get] Asked field names are: name.
biodb.TRACE[2025-09-22 18:26:13.058][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-09-22 18:26:13.058][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.058][ef$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.059][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-22 18:26:13.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-22 18:26:13.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.060][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-09-22 18:26:13.060][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-09-22 18:26:13.060][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.061][ef$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.061][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-09-22 18:26:13.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-09-22 18:26:13.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.066][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-09-22 18:26:13.066][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-22 18:26:13.067][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.067][ef$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.067][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-22 18:26:13.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-22 18:26:13.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.069][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-22 18:26:13.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-22 18:26:13.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.070][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-22 18:26:13.070][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-22 18:26:13.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.071][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-22 18:26:13.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-22 18:26:13.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.072][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.072][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-22 18:26:13.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-22 18:26:13.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.073][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-22 18:26:13.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-22 18:26:13.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.074][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.074][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-22 18:26:13.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-22 18:26:13.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.075][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-22 18:26:13.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-22 18:26:13.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.076][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-22 18:26:13.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-22 18:26:13.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.077][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-22 18:26:13.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-22 18:26:13.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-22 18:26:13.078][self$createEntryFromContent] Accession numbers: 85084.
biodb.TRACE[2025-09-22 18:26:13.079][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:13.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:13.079][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.080][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:13.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:13.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.081][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:13.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:13.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-22 18:26:13.082][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-22 18:26:13.082][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-22 18:26:13.082][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-22 18:26:13.084][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-22 18:26:13.084][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-22 18:26:13.085][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-22 18:26:13.085][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-22 18:26:13.085][private$loadEntries] Creating entries from ids [1]: "85086".
biodb.DEBUG[2025-09-22 18:26:13.085][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-09-22 18:26:13.086][cch$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-09-22 18:26:13.089][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/85086.xml.
biodb.DEBUG[2025-09-22 18:26:13.089][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-09-22 18:26:13.090][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-09-22 18:26:13.090][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-09-22 18:26:13.090][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-22 18:26:13.091][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-22 18:26:13.091][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-22 18:26:13.093][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-22 18:26:13.093][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-22 18:26:13.093][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-22 18:26:13.093][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-22 18:26:13.094][ef$get] Asked field names are: accession.
biodb.TRACE[2025-09-22 18:26:13.094][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-22 18:26:13.095][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.095][ef$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.095][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-22 18:26:13.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-22 18:26:13.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.096][ef$get] Asked field names are: charge.
biodb.TRACE[2025-09-22 18:26:13.097][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-09-22 18:26:13.097][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.097][ef$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.098][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-09-22 18:26:13.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-09-22 18:26:13.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.099][ef$get] Asked field names are: formula.
biodb.TRACE[2025-09-22 18:26:13.099][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-22 18:26:13.099][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.099][ef$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.100][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-09-22 18:26:13.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-22 18:26:13.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.101][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-09-22 18:26:13.101][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-22 18:26:13.101][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.102][ef$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.102][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-22 18:26:13.102][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-22 18:26:13.102][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.103][ef$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.103][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-09-22 18:26:13.103][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-09-22 18:26:13.106][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.106][ef$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.107][ef$get] Asked field names are: mass.
biodb.TRACE[2025-09-22 18:26:13.107][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:13.108][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.108][ef$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.108][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-09-22 18:26:13.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:13.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.109][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:13.110][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:13.110][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.110][ef$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.111][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:13.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:13.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.112][ef$get] Asked field names are: name.
biodb.TRACE[2025-09-22 18:26:13.112][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-09-22 18:26:13.112][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.112][ef$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.113][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-22 18:26:13.113][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-22 18:26:13.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.114][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-09-22 18:26:13.114][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-09-22 18:26:13.114][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.115][ef$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.115][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-09-22 18:26:13.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-09-22 18:26:13.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.116][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-09-22 18:26:13.116][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-22 18:26:13.117][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.117][ef$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.117][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-22 18:26:13.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-22 18:26:13.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.118][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-22 18:26:13.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-22 18:26:13.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.119][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-22 18:26:13.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-22 18:26:13.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.120][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-22 18:26:13.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-22 18:26:13.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.121][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.121][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-22 18:26:13.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-22 18:26:13.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.122][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-22 18:26:13.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-22 18:26:13.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.123][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-22 18:26:13.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-22 18:26:13.124][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.125][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-22 18:26:13.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-22 18:26:13.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.125][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.126][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-22 18:26:13.126][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-22 18:26:13.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.127][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-22 18:26:13.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-22 18:26:13.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-22 18:26:13.128][self$createEntryFromContent] Accession numbers: 85086.
biodb.TRACE[2025-09-22 18:26:13.128][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:13.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:13.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.129][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:13.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:13.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.130][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:13.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:13.131][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.131][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-22 18:26:13.131][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-22 18:26:13.131][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-22 18:26:13.132][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-22 18:26:13.133][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-22 18:26:13.134][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-22 18:26:13.134][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-22 18:26:13.134][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-22 18:26:13.135][private$loadEntries] Creating entries from ids [1]: "88123".
biodb.DEBUG[2025-09-22 18:26:13.135][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-09-22 18:26:13.135][cch$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-09-22 18:26:13.137][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/88123.xml.
biodb.DEBUG[2025-09-22 18:26:13.137][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-09-22 18:26:13.138][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-09-22 18:26:13.138][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-09-22 18:26:13.139][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-22 18:26:13.139][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-22 18:26:13.139][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-22 18:26:13.141][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-22 18:26:13.141][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-22 18:26:13.142][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-22 18:26:13.142][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-22 18:26:13.143][ef$get] Asked field names are: accession.
biodb.TRACE[2025-09-22 18:26:13.145][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-22 18:26:13.146][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.146][ef$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.147][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-22 18:26:13.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-22 18:26:13.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.148][ef$get] Asked field names are: charge.
biodb.TRACE[2025-09-22 18:26:13.148][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-09-22 18:26:13.148][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.149][ef$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.149][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-09-22 18:26:13.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-09-22 18:26:13.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.150][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.150][ef$get] Asked field names are: formula.
biodb.TRACE[2025-09-22 18:26:13.150][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-22 18:26:13.151][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.151][ef$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.151][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-09-22 18:26:13.152][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-22 18:26:13.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.152][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-09-22 18:26:13.153][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-22 18:26:13.153][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.153][ef$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.154][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-09-22 18:26:13.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-22 18:26:13.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.155][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-22 18:26:13.155][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-22 18:26:13.155][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.155][ef$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.156][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-22 18:26:13.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-22 18:26:13.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.157][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-09-22 18:26:13.157][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-09-22 18:26:13.157][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.158][ef$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.158][ef$get] Asked field names are: mass.
biodb.TRACE[2025-09-22 18:26:13.158][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:13.159][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.159][ef$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.159][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-09-22 18:26:13.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:13.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.160][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.160][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:13.160][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:13.161][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.161][ef$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.161][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:13.162][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:13.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.162][ef$get] Asked field names are: name.
biodb.TRACE[2025-09-22 18:26:13.163][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-09-22 18:26:13.163][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.163][ef$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.164][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-22 18:26:13.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-22 18:26:13.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.165][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-09-22 18:26:13.165][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-09-22 18:26:13.165][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.165][ef$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.166][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-09-22 18:26:13.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-09-22 18:26:13.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.167][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-09-22 18:26:13.167][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-22 18:26:13.167][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.168][ef$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.168][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-09-22 18:26:13.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-22 18:26:13.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.169][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-22 18:26:13.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-22 18:26:13.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.170][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-22 18:26:13.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-22 18:26:13.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.171][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-22 18:26:13.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-22 18:26:13.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.172][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-22 18:26:13.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-22 18:26:13.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.173][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-22 18:26:13.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-22 18:26:13.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.174][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.174][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-22 18:26:13.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-22 18:26:13.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.175][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-22 18:26:13.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-22 18:26:13.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.176][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-22 18:26:13.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-22 18:26:13.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.177][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-22 18:26:13.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-22 18:26:13.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.178][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-22 18:26:13.179][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-22 18:26:13.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-22 18:26:13.182][self$createEntryFromContent] Accession numbers: 88123.
biodb.TRACE[2025-09-22 18:26:13.183][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:13.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:13.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.184][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:13.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:13.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.185][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:13.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:13.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-22 18:26:13.186][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-22 18:26:13.186][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-22 18:26:13.186][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-22 18:26:13.188][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-22 18:26:13.188][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-22 18:26:13.189][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-22 18:26:13.189][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-22 18:26:13.189][private$loadEntries] Creating entries from ids [1]: "134117".
biodb.DEBUG[2025-09-22 18:26:13.190][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-09-22 18:26:13.190][cch$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-09-22 18:26:13.192][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/134117.xml.
biodb.DEBUG[2025-09-22 18:26:13.192][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-09-22 18:26:13.193][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-09-22 18:26:13.193][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-09-22 18:26:13.194][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-22 18:26:13.194][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-22 18:26:13.194][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-22 18:26:13.196][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-22 18:26:13.196][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-22 18:26:13.196][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-22 18:26:13.196][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-22 18:26:13.197][ef$get] Asked field names are: accession.
biodb.TRACE[2025-09-22 18:26:13.198][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-22 18:26:13.198][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.198][ef$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.198][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-22 18:26:13.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-22 18:26:13.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.200][ef$get] Asked field names are: charge.
biodb.TRACE[2025-09-22 18:26:13.200][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-09-22 18:26:13.200][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.200][ef$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.201][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-09-22 18:26:13.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-09-22 18:26:13.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.202][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.202][ef$get] Asked field names are: formula.
biodb.TRACE[2025-09-22 18:26:13.202][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-22 18:26:13.202][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.203][ef$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.203][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-09-22 18:26:13.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-22 18:26:13.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.204][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-09-22 18:26:13.204][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-22 18:26:13.205][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.205][ef$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.205][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-09-22 18:26:13.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-22 18:26:13.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.206][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-22 18:26:13.206][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-22 18:26:13.207][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.207][ef$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.207][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-22 18:26:13.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-22 18:26:13.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.208][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-09-22 18:26:13.209][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-09-22 18:26:13.209][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.209][ef$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.210][ef$get] Asked field names are: mass.
biodb.TRACE[2025-09-22 18:26:13.210][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:13.210][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.210][ef$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.211][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-09-22 18:26:13.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:13.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.212][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:13.212][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:13.212][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.213][ef$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.213][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:13.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:13.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.214][ef$get] Asked field names are: name.
biodb.TRACE[2025-09-22 18:26:13.214][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-09-22 18:26:13.215][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.215][ef$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.215][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-22 18:26:13.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-22 18:26:13.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.216][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-09-22 18:26:13.217][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-09-22 18:26:13.217][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.217][ef$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.217][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-09-22 18:26:13.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-09-22 18:26:13.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.219][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-09-22 18:26:13.222][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-22 18:26:13.222][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.223][ef$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.223][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-09-22 18:26:13.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-22 18:26:13.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.225][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-22 18:26:13.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-22 18:26:13.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.226][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-22 18:26:13.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-22 18:26:13.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.227][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-22 18:26:13.227][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-22 18:26:13.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.228][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-22 18:26:13.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-22 18:26:13.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.229][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-22 18:26:13.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-22 18:26:13.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.230][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-22 18:26:13.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-22 18:26:13.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.231][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-22 18:26:13.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-22 18:26:13.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.232][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-22 18:26:13.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-22 18:26:13.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.233][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-22 18:26:13.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-22 18:26:13.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.234][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-22 18:26:13.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-22 18:26:13.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-22 18:26:13.235][self$createEntryFromContent] Accession numbers: 134117.
biodb.TRACE[2025-09-22 18:26:13.236][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:13.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:13.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.237][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:13.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:13.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.238][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:13.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:13.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-22 18:26:13.239][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-22 18:26:13.239][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-22 18:26:13.239][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-22 18:26:13.241][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-22 18:26:13.242][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-22 18:26:13.242][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-22 18:26:13.242][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-22 18:26:13.242][private$loadEntries] Creating entries from ids [1]: "138307".
biodb.DEBUG[2025-09-22 18:26:13.243][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-09-22 18:26:13.243][cch$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-09-22 18:26:13.244][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/138307.xml.
biodb.DEBUG[2025-09-22 18:26:13.245][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-09-22 18:26:13.245][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-09-22 18:26:13.246][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-09-22 18:26:13.246][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-22 18:26:13.246][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-22 18:26:13.246][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-22 18:26:13.248][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-22 18:26:13.248][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-22 18:26:13.249][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-22 18:26:13.249][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-22 18:26:13.250][ef$get] Asked field names are: accession.
biodb.TRACE[2025-09-22 18:26:13.250][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-22 18:26:13.250][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.250][ef$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.251][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-22 18:26:13.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-22 18:26:13.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.252][ef$get] Asked field names are: charge.
biodb.TRACE[2025-09-22 18:26:13.252][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-09-22 18:26:13.252][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.253][ef$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.253][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-09-22 18:26:13.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-09-22 18:26:13.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.254][ef$get] Asked field names are: formula.
biodb.TRACE[2025-09-22 18:26:13.254][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-22 18:26:13.255][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.255][ef$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.255][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-09-22 18:26:13.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-22 18:26:13.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.256][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-09-22 18:26:13.257][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-22 18:26:13.257][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.257][ef$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.257][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-09-22 18:26:13.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-22 18:26:13.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.258][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-22 18:26:13.261][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-22 18:26:13.262][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.262][ef$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.262][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-22 18:26:13.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-22 18:26:13.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.264][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-09-22 18:26:13.264][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-09-22 18:26:13.265][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.265][ef$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.265][ef$get] Asked field names are: mass.
biodb.TRACE[2025-09-22 18:26:13.266][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:13.266][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.266][ef$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.266][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-09-22 18:26:13.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:13.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.268][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:13.268][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:13.268][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.268][ef$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.269][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:13.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:13.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.270][ef$get] Asked field names are: name.
biodb.TRACE[2025-09-22 18:26:13.270][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-09-22 18:26:13.270][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.270][ef$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.271][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-22 18:26:13.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-22 18:26:13.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.272][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-09-22 18:26:13.272][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-09-22 18:26:13.272][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.273][ef$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.273][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-09-22 18:26:13.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-09-22 18:26:13.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.274][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-09-22 18:26:13.274][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-22 18:26:13.274][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.275][ef$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.275][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-09-22 18:26:13.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-22 18:26:13.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.276][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-22 18:26:13.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-22 18:26:13.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.277][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-22 18:26:13.277][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-22 18:26:13.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.278][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-22 18:26:13.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-22 18:26:13.278][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.279][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-22 18:26:13.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-22 18:26:13.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.280][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-22 18:26:13.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-22 18:26:13.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.281][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-22 18:26:13.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-22 18:26:13.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.282][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-22 18:26:13.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-22 18:26:13.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.283][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-22 18:26:13.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-22 18:26:13.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.284][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-22 18:26:13.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-22 18:26:13.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.285][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-22 18:26:13.285][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-22 18:26:13.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-22 18:26:13.286][self$createEntryFromContent] Accession numbers: 138307.
biodb.TRACE[2025-09-22 18:26:13.286][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:13.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:13.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.287][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:13.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:13.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.288][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.288][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:13.288][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:13.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-22 18:26:13.289][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-22 18:26:13.289][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-22 18:26:13.289][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-22 18:26:13.291][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-22 18:26:13.291][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-22 18:26:13.292][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-22 18:26:13.292][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-22 18:26:13.292][private$loadEntries] Creating entries from ids [1]: "176803".
biodb.DEBUG[2025-09-22 18:26:13.292][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-09-22 18:26:13.293][cch$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-09-22 18:26:13.294][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/176803.xml.
biodb.DEBUG[2025-09-22 18:26:13.295][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-09-22 18:26:13.295][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-09-22 18:26:13.297][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-09-22 18:26:13.298][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-22 18:26:13.299][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-22 18:26:13.299][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-22 18:26:13.300][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-22 18:26:13.301][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-22 18:26:13.301][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-22 18:26:13.301][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-22 18:26:13.302][ef$get] Asked field names are: accession.
biodb.TRACE[2025-09-22 18:26:13.302][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-22 18:26:13.303][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.303][ef$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.303][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-22 18:26:13.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-22 18:26:13.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.304][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.304][ef$get] Asked field names are: charge.
biodb.TRACE[2025-09-22 18:26:13.305][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-09-22 18:26:13.305][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.305][ef$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.305][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-09-22 18:26:13.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-09-22 18:26:13.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.306][ef$get] Asked field names are: formula.
biodb.TRACE[2025-09-22 18:26:13.307][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-22 18:26:13.307][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.307][ef$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.307][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-09-22 18:26:13.308][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-22 18:26:13.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.308][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-09-22 18:26:13.309][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-22 18:26:13.309][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.309][ef$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.309][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-09-22 18:26:13.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-22 18:26:13.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.310][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-22 18:26:13.311][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-22 18:26:13.311][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.311][ef$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.311][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-22 18:26:13.312][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-22 18:26:13.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.312][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-09-22 18:26:13.313][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-09-22 18:26:13.313][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.313][ef$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.313][ef$get] Asked field names are: mass.
biodb.TRACE[2025-09-22 18:26:13.314][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:13.314][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.314][ef$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.315][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-09-22 18:26:13.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:13.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.316][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:13.316][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:13.316][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.316][ef$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.317][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:13.317][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:13.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.317][ef$get] Asked field names are: name.
biodb.TRACE[2025-09-22 18:26:13.318][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-09-22 18:26:13.318][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.318][ef$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.319][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-22 18:26:13.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-22 18:26:13.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.319][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.320][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-09-22 18:26:13.320][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-09-22 18:26:13.320][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.320][ef$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.321][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-09-22 18:26:13.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-09-22 18:26:13.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.322][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-09-22 18:26:13.322][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-22 18:26:13.322][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.322][ef$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.323][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-09-22 18:26:13.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-22 18:26:13.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.324][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-22 18:26:13.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-22 18:26:13.324][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.325][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.325][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-22 18:26:13.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-22 18:26:13.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.326][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-22 18:26:13.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-22 18:26:13.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.327][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-22 18:26:13.327][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-22 18:26:13.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.328][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-22 18:26:13.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-22 18:26:13.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.329][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-22 18:26:13.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-22 18:26:13.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.332][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-22 18:26:13.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-22 18:26:13.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.334][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-22 18:26:13.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-22 18:26:13.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.335][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-22 18:26:13.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-22 18:26:13.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.336][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-22 18:26:13.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-22 18:26:13.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-22 18:26:13.337][self$createEntryFromContent] Accession numbers: 176803.
biodb.TRACE[2025-09-22 18:26:13.338][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:13.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:13.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.339][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:13.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:13.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.340][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:13.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:13.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-22 18:26:13.341][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-22 18:26:13.341][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-22 18:26:13.341][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-22 18:26:13.343][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-22 18:26:13.343][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-22 18:26:13.344][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-22 18:26:13.344][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-22 18:26:13.344][private$loadEntries] Creating entries from ids [1]: "176962".
biodb.DEBUG[2025-09-22 18:26:13.345][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-09-22 18:26:13.345][cch$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-09-22 18:26:13.347][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/176962.xml.
biodb.DEBUG[2025-09-22 18:26:13.348][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-09-22 18:26:13.348][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-09-22 18:26:13.348][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-09-22 18:26:13.349][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-22 18:26:13.349][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-22 18:26:13.349][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-22 18:26:13.351][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-22 18:26:13.352][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-22 18:26:13.352][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-22 18:26:13.352][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-22 18:26:13.353][ef$get] Asked field names are: accession.
biodb.TRACE[2025-09-22 18:26:13.353][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-22 18:26:13.353][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.354][ef$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.354][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-22 18:26:13.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-22 18:26:13.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.355][ef$get] Asked field names are: charge.
biodb.TRACE[2025-09-22 18:26:13.355][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-09-22 18:26:13.356][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.356][ef$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.356][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-09-22 18:26:13.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-09-22 18:26:13.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.357][ef$get] Asked field names are: formula.
biodb.TRACE[2025-09-22 18:26:13.358][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-22 18:26:13.358][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.358][ef$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.359][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-09-22 18:26:13.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-22 18:26:13.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.360][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-09-22 18:26:13.360][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-22 18:26:13.360][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.360][ef$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.361][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-09-22 18:26:13.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-22 18:26:13.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.362][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-22 18:26:13.362][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-22 18:26:13.362][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.363][ef$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.363][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-22 18:26:13.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-22 18:26:13.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.364][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-09-22 18:26:13.364][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-09-22 18:26:13.365][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.365][ef$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.365][ef$get] Asked field names are: mass.
biodb.TRACE[2025-09-22 18:26:13.365][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:13.366][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.366][ef$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.366][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-09-22 18:26:13.367][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:13.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.367][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:13.368][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:13.368][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.368][ef$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.368][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:13.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:13.369][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.369][ef$get] Asked field names are: name.
biodb.TRACE[2025-09-22 18:26:13.370][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-09-22 18:26:13.372][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.373][ef$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.373][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-22 18:26:13.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-22 18:26:13.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.374][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.375][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-09-22 18:26:13.375][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-09-22 18:26:13.375][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.375][ef$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.376][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-09-22 18:26:13.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-09-22 18:26:13.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.377][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-09-22 18:26:13.377][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-22 18:26:13.377][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.378][ef$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.378][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-09-22 18:26:13.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-22 18:26:13.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.379][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-22 18:26:13.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-22 18:26:13.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.380][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-22 18:26:13.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-22 18:26:13.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.381][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-22 18:26:13.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-22 18:26:13.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.382][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-22 18:26:13.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-22 18:26:13.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.383][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.383][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-22 18:26:13.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-22 18:26:13.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.384][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-22 18:26:13.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-22 18:26:13.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.385][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-22 18:26:13.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-22 18:26:13.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.387][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-22 18:26:13.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-22 18:26:13.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.388][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-22 18:26:13.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-22 18:26:13.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.389][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-22 18:26:13.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-22 18:26:13.389][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.389][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-22 18:26:13.390][self$createEntryFromContent] Accession numbers: 176962.
biodb.TRACE[2025-09-22 18:26:13.390][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:13.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:13.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.391][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:13.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:13.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.392][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:13.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:13.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-22 18:26:13.393][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-22 18:26:13.393][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-22 18:26:13.393][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-22 18:26:13.395][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-22 18:26:13.396][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-22 18:26:13.396][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-22 18:26:13.396][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-22 18:26:13.396][private$loadEntries] Creating entries from ids [1]: "198655".
biodb.DEBUG[2025-09-22 18:26:13.397][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-09-22 18:26:13.397][cch$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-09-22 18:26:13.400][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/198655.xml.
biodb.DEBUG[2025-09-22 18:26:13.401][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-09-22 18:26:13.401][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-09-22 18:26:13.402][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-09-22 18:26:13.402][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-22 18:26:13.402][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-22 18:26:13.403][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-22 18:26:13.404][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-22 18:26:13.405][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-22 18:26:13.405][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-22 18:26:13.405][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-22 18:26:13.406][ef$get] Asked field names are: accession.
biodb.TRACE[2025-09-22 18:26:13.406][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-22 18:26:13.406][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.407][ef$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.407][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-22 18:26:13.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-22 18:26:13.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.408][ef$get] Asked field names are: charge.
biodb.TRACE[2025-09-22 18:26:13.408][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-09-22 18:26:13.409][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.409][ef$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.409][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-09-22 18:26:13.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-09-22 18:26:13.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.410][ef$get] Asked field names are: formula.
biodb.TRACE[2025-09-22 18:26:13.413][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-22 18:26:13.413][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.414][ef$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.414][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-09-22 18:26:13.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-22 18:26:13.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.416][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-09-22 18:26:13.416][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-22 18:26:13.416][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.416][ef$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.417][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-09-22 18:26:13.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-22 18:26:13.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.417][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.418][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-22 18:26:13.418][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-22 18:26:13.418][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.419][ef$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.419][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-22 18:26:13.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-22 18:26:13.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.420][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-09-22 18:26:13.420][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-09-22 18:26:13.421][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.421][ef$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.421][ef$get] Asked field names are: mass.
biodb.TRACE[2025-09-22 18:26:13.421][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:13.422][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.422][ef$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.422][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-09-22 18:26:13.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:13.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.423][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:13.424][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:13.424][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.424][ef$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.424][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:13.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:13.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.426][ef$get] Asked field names are: name.
biodb.TRACE[2025-09-22 18:26:13.426][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-09-22 18:26:13.426][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.426][ef$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.427][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-22 18:26:13.427][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-22 18:26:13.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.428][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-09-22 18:26:13.428][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-09-22 18:26:13.428][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.428][ef$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.429][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-09-22 18:26:13.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-09-22 18:26:13.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.430][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-09-22 18:26:13.430][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-22 18:26:13.430][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.431][ef$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.431][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-09-22 18:26:13.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-22 18:26:13.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.432][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-22 18:26:13.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-22 18:26:13.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.433][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-22 18:26:13.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-22 18:26:13.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.434][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-22 18:26:13.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-22 18:26:13.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.435][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-22 18:26:13.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-22 18:26:13.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.436][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-22 18:26:13.436][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-22 18:26:13.437][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.437][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-22 18:26:13.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-22 18:26:13.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.438][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.438][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-22 18:26:13.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-22 18:26:13.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.439][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-22 18:26:13.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-22 18:26:13.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.440][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-22 18:26:13.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-22 18:26:13.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.441][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-22 18:26:13.442][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-22 18:26:13.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-22 18:26:13.442][self$createEntryFromContent] Accession numbers: 198655.
biodb.TRACE[2025-09-22 18:26:13.443][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:13.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:13.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.444][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:13.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:13.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.445][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:13.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:13.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-22 18:26:13.448][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-22 18:26:13.448][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-22 18:26:13.449][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-22 18:26:13.451][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-22 18:26:13.451][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-22 18:26:13.451][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-22 18:26:13.452][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-22 18:26:13.452][private$loadEntries] Creating entries from ids [1]: "215045".
biodb.DEBUG[2025-09-22 18:26:13.452][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-09-22 18:26:13.453][cch$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-09-22 18:26:13.454][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/215045.xml.
biodb.DEBUG[2025-09-22 18:26:13.454][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-09-22 18:26:13.455][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-09-22 18:26:13.455][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-09-22 18:26:13.455][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-22 18:26:13.456][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-22 18:26:13.456][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-22 18:26:13.458][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-22 18:26:13.458][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-22 18:26:13.458][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-22 18:26:13.458][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-22 18:26:13.459][ef$get] Asked field names are: accession.
biodb.TRACE[2025-09-22 18:26:13.459][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-22 18:26:13.460][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.460][ef$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.460][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-22 18:26:13.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-22 18:26:13.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.461][ef$get] Asked field names are: charge.
biodb.TRACE[2025-09-22 18:26:13.462][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-09-22 18:26:13.462][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.462][ef$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.463][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-09-22 18:26:13.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-09-22 18:26:13.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.464][ef$get] Asked field names are: formula.
biodb.TRACE[2025-09-22 18:26:13.464][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-22 18:26:13.464][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.464][ef$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.465][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-09-22 18:26:13.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-22 18:26:13.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.466][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-09-22 18:26:13.466][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-22 18:26:13.467][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.467][ef$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.467][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-09-22 18:26:13.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-22 18:26:13.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.468][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-22 18:26:13.468][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-22 18:26:13.469][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.469][ef$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.469][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-22 18:26:13.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-22 18:26:13.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.470][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-09-22 18:26:13.471][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-09-22 18:26:13.471][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.471][ef$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.471][ef$get] Asked field names are: mass.
biodb.TRACE[2025-09-22 18:26:13.472][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:13.472][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.472][ef$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.472][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-09-22 18:26:13.473][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:13.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.474][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:13.474][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:13.474][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.474][ef$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.475][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:13.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:13.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.476][ef$get] Asked field names are: name.
biodb.TRACE[2025-09-22 18:26:13.476][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-09-22 18:26:13.476][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.476][ef$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.477][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-22 18:26:13.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-22 18:26:13.477][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.478][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.478][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-09-22 18:26:13.478][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-09-22 18:26:13.478][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.479][ef$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.479][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-09-22 18:26:13.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-09-22 18:26:13.480][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.480][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-09-22 18:26:13.480][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-22 18:26:13.481][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.481][ef$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.481][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-09-22 18:26:13.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-22 18:26:13.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.482][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-22 18:26:13.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-22 18:26:13.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.483][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-22 18:26:13.483][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-22 18:26:13.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.487][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-22 18:26:13.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-22 18:26:13.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.489][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-22 18:26:13.489][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-22 18:26:13.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.490][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-22 18:26:13.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-22 18:26:13.490][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.491][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-22 18:26:13.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-22 18:26:13.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.492][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-22 18:26:13.492][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-22 18:26:13.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.493][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-22 18:26:13.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-22 18:26:13.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.494][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.494][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-22 18:26:13.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-22 18:26:13.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.495][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.495][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-22 18:26:13.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-22 18:26:13.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-22 18:26:13.496][self$createEntryFromContent] Accession numbers: 215045.
biodb.TRACE[2025-09-22 18:26:13.496][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:13.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:13.497][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.497][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.497][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:13.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:13.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.499][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:13.499][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:13.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
sched.DEBUG[2025-09-22 18:26:13.506][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-09-22 18:26:13.507][private$cache$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/sched.
fscache.DEBUG[2025-09-22 18:26:13.508][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/sched/80cdc67a2a6332dd4ceb98b7656194b9.content.
sched.DEBUG[2025-09-22 18:26:13.508][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-09-22 18:26:13.509][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-22 18:26:13.509][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-22 18:26:13.510][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-22 18:26:13.511][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-22 18:26:13.511][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-22 18:26:13.512][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-22 18:26:13.512][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-22 18:26:13.512][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:13.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:13.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.513][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:13.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:13.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.515][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:13.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:13.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-22 18:26:13.516][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-22 18:26:13.516][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-22 18:26:13.516][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-22 18:26:13.518][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-22 18:26:13.518][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-22 18:26:13.518][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-22 18:26:13.519][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-22 18:26:13.519][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:13.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:13.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.520][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:13.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:13.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.521][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:13.521][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:13.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.522][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:13.523][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:13.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.523][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:13.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:13.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.524][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-22 18:26:13.527][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-22 18:26:13.527][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-22 18:26:13.528][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-22 18:26:13.530][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-22 18:26:13.530][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-22 18:26:13.530][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-22 18:26:13.530][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-22 18:26:13.531][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:13.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:13.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.532][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:13.532][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:13.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.533][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:13.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:13.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.534][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:13.535][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:13.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.535][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.535][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:13.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:13.536][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-22 18:26:13.536][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-22 18:26:13.537][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-22 18:26:13.537][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-22 18:26:13.539][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-22 18:26:13.539][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-22 18:26:13.539][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-22 18:26:13.539][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-22 18:26:13.540][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:13.540][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:13.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.541][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.541][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:13.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:13.541][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.542][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:13.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:13.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.543][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.543][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:13.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:13.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.544][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:13.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:13.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-22 18:26:13.545][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-22 18:26:13.545][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-22 18:26:13.546][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-22 18:26:13.547][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-22 18:26:13.548][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-22 18:26:13.548][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-22 18:26:13.548][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-22 18:26:13.548][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:13.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:13.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.549][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:13.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:13.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.551][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:13.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:13.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.551][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-22 18:26:13.552][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-22 18:26:13.552][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-22 18:26:13.552][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-22 18:26:13.554][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-22 18:26:13.554][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-22 18:26:13.554][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-22 18:26:13.554][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-22 18:26:13.555][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:13.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:13.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.556][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:13.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:13.556][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.557][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:13.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:13.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-22 18:26:13.558][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-22 18:26:13.558][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-22 18:26:13.558][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-22 18:26:13.560][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-22 18:26:13.560][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-22 18:26:13.560][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-22 18:26:13.561][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-22 18:26:13.561][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:13.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:13.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.562][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:13.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:13.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.566][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:13.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:13.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-22 18:26:13.567][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-22 18:26:13.568][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-22 18:26:13.568][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-22 18:26:13.570][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-22 18:26:13.570][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-22 18:26:13.571][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-22 18:26:13.571][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-22 18:26:13.571][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:13.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:13.572][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.573][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:13.573][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:13.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.574][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:13.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:13.575][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.575][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-22 18:26:13.575][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-22 18:26:13.575][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-22 18:26:13.576][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-22 18:26:13.577][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-22 18:26:13.578][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-22 18:26:13.578][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-22 18:26:13.578][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-22 18:26:13.579][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:13.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:13.579][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.580][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:13.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:13.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.581][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.581][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:13.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:13.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-22 18:26:13.582][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-22 18:26:13.582][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-22 18:26:13.582][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-22 18:26:13.584][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-22 18:26:13.584][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-22 18:26:13.585][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-22 18:26:13.585][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-22 18:26:13.585][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:13.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:13.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.586][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:13.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:13.587][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.587][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:13.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:13.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.588][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-22 18:26:13.588][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-22 18:26:13.589][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-22 18:26:13.589][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-22 18:26:13.590][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-22 18:26:13.591][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-22 18:26:13.591][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-22 18:26:13.591][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-22 18:26:13.592][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:13.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:13.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.593][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:13.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:13.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.594][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:13.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:13.594][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-22 18:26:13.595][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-22 18:26:13.595][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-22 18:26:13.595][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-22 18:26:13.597][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-22 18:26:13.597][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-22 18:26:13.597][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-22 18:26:13.598][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-22 18:26:13.598][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:13.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:13.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.599][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:13.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:13.600][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.600][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:13.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:13.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-22 18:26:13.601][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-22 18:26:13.601][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-22 18:26:13.602][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-22 18:26:13.603][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-22 18:26:13.606][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-22 18:26:13.606][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-22 18:26:13.607][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-22 18:26:13.607][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:13.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:13.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.608][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.608][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:13.608][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:13.609][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.609][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:13.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:13.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.610][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-22 18:26:13.610][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-22 18:26:13.611][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-22 18:26:13.611][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-22 18:26:13.612][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-22 18:26:13.613][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-22 18:26:13.613][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-22 18:26:13.613][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-22 18:26:13.614][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:13.614][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:13.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.615][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:13.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:13.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.616][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.616][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:13.616][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:13.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-22 18:26:13.617][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-22 18:26:13.617][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-22 18:26:13.617][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-22 18:26:13.619][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-22 18:26:13.619][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-22 18:26:13.620][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-22 18:26:13.620][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-22 18:26:13.620][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:13.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:13.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.621][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:13.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:13.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.622][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:13.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:13.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-22 18:26:13.623][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-22 18:26:13.624][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-22 18:26:13.624][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-22 18:26:13.626][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-22 18:26:13.626][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-22 18:26:13.626][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-22 18:26:13.626][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-22 18:26:13.627][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:13.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:13.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.628][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:13.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:13.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.629][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:13.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:13.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-22 18:26:13.630][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-22 18:26:13.630][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-22 18:26:13.630][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-22 18:26:13.632][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-22 18:26:13.632][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-22 18:26:13.633][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-22 18:26:13.633][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-22 18:26:13.633][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:13.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:13.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.634][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:13.635][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:13.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.635][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.635][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:13.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:13.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-22 18:26:13.636][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-22 18:26:13.637][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-22 18:26:13.637][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-22 18:26:13.639][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-22 18:26:13.639][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-22 18:26:13.639][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-22 18:26:13.640][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-22 18:26:13.640][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:13.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:13.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.641][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:13.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:13.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.646][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:13.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:13.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-22 18:26:13.648][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-22 18:26:13.648][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-22 18:26:13.649][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-22 18:26:13.651][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-22 18:26:13.651][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-22 18:26:13.651][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-22 18:26:13.651][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-22 18:26:13.652][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:13.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:13.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.653][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:13.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:13.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.654][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:13.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:13.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-22 18:26:13.655][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-22 18:26:13.655][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-22 18:26:13.655][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-22 18:26:13.657][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-22 18:26:13.657][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-22 18:26:13.658][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-22 18:26:13.658][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-22 18:26:13.658][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:13.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:13.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.659][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.659][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:13.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:13.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.660][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:13.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:13.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.666][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:13.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:13.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.667][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:13.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:13.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.668][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:13.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:13.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.669][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:13.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:13.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.670][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:13.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:13.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
sched.DEBUG[2025-09-22 18:26:13.679][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39124*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-09-22 18:26:13.680][private$cache$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/sched.
fscache.DEBUG[2025-09-22 18:26:13.681][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/sched/63dc67d905e130c19900bd338bad7ba9.content.
sched.DEBUG[2025-09-22 18:26:13.682][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
sched.DEBUG[2025-09-22 18:26:13.683][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39125*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-09-22 18:26:13.684][private$cache$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/sched.
fscache.DEBUG[2025-09-22 18:26:13.688][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/sched/287cac4c6e727656d926f26e3952924c.content.
sched.DEBUG[2025-09-22 18:26:13.688][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-09-22 18:26:13.689][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-22 18:26:13.690][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-22 18:26:13.690][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-22 18:26:13.692][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-22 18:26:13.692][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-22 18:26:13.693][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-22 18:26:13.693][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-22 18:26:13.693][private$loadEntries] Creating entries from ids [1]: "4648".
biodb.DEBUG[2025-09-22 18:26:13.694][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-09-22 18:26:13.694][cch$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-09-22 18:26:13.696][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/4648.xml.
biodb.DEBUG[2025-09-22 18:26:13.696][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-09-22 18:26:13.696][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-09-22 18:26:13.697][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-09-22 18:26:13.697][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-22 18:26:13.698][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-22 18:26:13.698][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-22 18:26:13.699][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-22 18:26:13.700][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-22 18:26:13.700][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-22 18:26:13.700][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-22 18:26:13.701][ef$get] Asked field names are: accession.
biodb.TRACE[2025-09-22 18:26:13.701][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-22 18:26:13.702][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.702][ef$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.702][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-22 18:26:13.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-22 18:26:13.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.703][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.703][ef$get] Asked field names are: charge.
biodb.TRACE[2025-09-22 18:26:13.704][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-09-22 18:26:13.704][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.704][ef$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.705][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-09-22 18:26:13.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-09-22 18:26:13.705][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.706][ef$get] Asked field names are: formula.
biodb.TRACE[2025-09-22 18:26:13.706][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-22 18:26:13.706][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.706][ef$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.707][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-09-22 18:26:13.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-22 18:26:13.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.708][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-09-22 18:26:13.708][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-22 18:26:13.708][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.709][ef$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.709][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-09-22 18:26:13.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-22 18:26:13.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.710][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-22 18:26:13.710][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-22 18:26:13.711][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.711][ef$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.711][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-22 18:26:13.711][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-22 18:26:13.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.712][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-09-22 18:26:13.712][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-09-22 18:26:13.713][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.713][ef$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.713][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-09-22 18:26:13.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-09-22 18:26:13.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.714][ef$get] Asked field names are: mass.
biodb.TRACE[2025-09-22 18:26:13.715][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:13.715][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.715][ef$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.715][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-09-22 18:26:13.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:13.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.717][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:13.717][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:13.717][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.717][ef$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.718][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:13.718][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:13.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.718][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.719][ef$get] Asked field names are: name.
biodb.TRACE[2025-09-22 18:26:13.719][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-09-22 18:26:13.719][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.720][ef$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.720][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-22 18:26:13.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-22 18:26:13.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.721][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-09-22 18:26:13.721][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-09-22 18:26:13.722][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.722][ef$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.722][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-09-22 18:26:13.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-09-22 18:26:13.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.723][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-09-22 18:26:13.723][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-22 18:26:13.724][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.724][ef$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.724][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-09-22 18:26:13.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-22 18:26:13.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.725][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-22 18:26:13.728][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-22 18:26:13.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.729][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-22 18:26:13.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-22 18:26:13.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.730][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.731][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-22 18:26:13.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-22 18:26:13.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.732][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-22 18:26:13.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-22 18:26:13.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.733][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.733][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-22 18:26:13.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-22 18:26:13.733][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.734][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.734][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-22 18:26:13.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-22 18:26:13.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.735][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-22 18:26:13.735][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-22 18:26:13.736][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.736][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-22 18:26:13.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-22 18:26:13.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.737][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.737][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-22 18:26:13.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-22 18:26:13.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.739][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-22 18:26:13.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-22 18:26:13.739][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-22 18:26:13.740][self$createEntryFromContent] Accession numbers: 4648.
biodb.TRACE[2025-09-22 18:26:13.740][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:13.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:13.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.741][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:13.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:13.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.742][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:13.742][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:13.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-22 18:26:13.743][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-22 18:26:13.744][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-22 18:26:13.744][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-22 18:26:13.746][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-22 18:26:13.746][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-22 18:26:13.746][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-22 18:26:13.746][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-22 18:26:13.747][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:13.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:13.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.748][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:13.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:13.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.749][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.749][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:13.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:13.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-22 18:26:13.750][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-22 18:26:13.750][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-22 18:26:13.751][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-22 18:26:13.752][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-22 18:26:13.753][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-22 18:26:13.753][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-22 18:26:13.753][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-22 18:26:13.753][private$loadEntries] Creating entries from ids [1]: "62447".
biodb.DEBUG[2025-09-22 18:26:13.754][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-09-22 18:26:13.754][cch$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-09-22 18:26:13.756][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/62447.xml.
biodb.DEBUG[2025-09-22 18:26:13.756][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-09-22 18:26:13.756][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-09-22 18:26:13.757][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-09-22 18:26:13.757][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-22 18:26:13.757][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-22 18:26:13.758][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-22 18:26:13.759][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-22 18:26:13.760][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-22 18:26:13.760][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-22 18:26:13.760][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-22 18:26:13.761][ef$get] Asked field names are: accession.
biodb.TRACE[2025-09-22 18:26:13.761][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-22 18:26:13.762][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.762][ef$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.762][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-22 18:26:13.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-22 18:26:13.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.763][ef$get] Asked field names are: charge.
biodb.TRACE[2025-09-22 18:26:13.764][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-09-22 18:26:13.764][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.764][ef$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.764][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-09-22 18:26:13.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-09-22 18:26:13.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.766][ef$get] Asked field names are: formula.
biodb.TRACE[2025-09-22 18:26:13.766][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-22 18:26:13.769][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.769][ef$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.770][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-09-22 18:26:13.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-22 18:26:13.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.771][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-09-22 18:26:13.772][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-22 18:26:13.772][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.772][ef$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.772][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-09-22 18:26:13.773][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-22 18:26:13.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.773][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-22 18:26:13.774][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-22 18:26:13.774][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.774][ef$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.775][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-22 18:26:13.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-22 18:26:13.775][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.776][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-09-22 18:26:13.776][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-09-22 18:26:13.776][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.777][ef$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.777][ef$get] Asked field names are: mass.
biodb.TRACE[2025-09-22 18:26:13.777][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:13.777][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.778][ef$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.778][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-09-22 18:26:13.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:13.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.779][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:13.779][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:13.780][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.780][ef$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.780][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:13.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:13.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.781][ef$get] Asked field names are: name.
biodb.TRACE[2025-09-22 18:26:13.782][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-09-22 18:26:13.782][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.782][ef$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.782][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-22 18:26:13.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-22 18:26:13.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.784][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-09-22 18:26:13.784][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-09-22 18:26:13.784][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.784][ef$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.785][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-09-22 18:26:13.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-09-22 18:26:13.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.786][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-09-22 18:26:13.786][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-22 18:26:13.786][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.787][ef$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.787][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-09-22 18:26:13.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-22 18:26:13.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.788][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-22 18:26:13.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-22 18:26:13.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.789][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-22 18:26:13.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-22 18:26:13.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.790][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-22 18:26:13.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-22 18:26:13.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.791][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.791][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-22 18:26:13.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-22 18:26:13.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.792][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-22 18:26:13.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-22 18:26:13.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.793][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-22 18:26:13.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-22 18:26:13.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.794][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-22 18:26:13.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-22 18:26:13.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.795][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-22 18:26:13.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-22 18:26:13.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.796][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-22 18:26:13.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-22 18:26:13.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.797][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-22 18:26:13.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-22 18:26:13.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-22 18:26:13.798][self$createEntryFromContent] Accession numbers: 62447.
biodb.TRACE[2025-09-22 18:26:13.799][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:13.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:13.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.800][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:13.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:13.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.801][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:13.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:13.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
sched.DEBUG[2025-09-22 18:26:13.811][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-09-22 18:26:13.812][private$cache$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/sched.
fscache.DEBUG[2025-09-22 18:26:13.813][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/sched/80cdc67a2a6332dd4ceb98b7656194b9.content.
sched.DEBUG[2025-09-22 18:26:13.814][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-09-22 18:26:13.814][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-22 18:26:13.815][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-22 18:26:13.815][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-22 18:26:13.817][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-22 18:26:13.817][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-22 18:26:13.817][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-22 18:26:13.817][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-22 18:26:13.818][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:13.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:13.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.819][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:13.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:13.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.820][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:13.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:13.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-22 18:26:13.821][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-22 18:26:13.821][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-22 18:26:13.822][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-22 18:26:13.823][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-22 18:26:13.823][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-22 18:26:13.824][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-22 18:26:13.824][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-22 18:26:13.824][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:13.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:13.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.825][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:13.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:13.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.826][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:13.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:13.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.828][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:13.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:13.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.829][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:13.829][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:13.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-22 18:26:13.830][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-22 18:26:13.830][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-22 18:26:13.830][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-22 18:26:13.832][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-22 18:26:13.832][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-22 18:26:13.832][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-22 18:26:13.833][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-22 18:26:13.833][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:13.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:13.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.834][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:13.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:13.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.835][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.835][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:13.835][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:13.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.836][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:13.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:13.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.837][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:13.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:13.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.838][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-22 18:26:13.838][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-22 18:26:13.839][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-22 18:26:13.839][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-22 18:26:13.841][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-22 18:26:13.841][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-22 18:26:13.841][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-22 18:26:13.841][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-22 18:26:13.842][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:13.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:13.842][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.843][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:13.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:13.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.843][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.844][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:13.844][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:13.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.848][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:13.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:13.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.849][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:13.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:13.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-22 18:26:13.850][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-22 18:26:13.851][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-22 18:26:13.851][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-22 18:26:13.852][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-22 18:26:13.853][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-22 18:26:13.853][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-22 18:26:13.853][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-22 18:26:13.854][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:13.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:13.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.855][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:13.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:13.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.856][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:13.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:13.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-22 18:26:13.857][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-22 18:26:13.857][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-22 18:26:13.857][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-22 18:26:13.859][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-22 18:26:13.859][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-22 18:26:13.860][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-22 18:26:13.860][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-22 18:26:13.860][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:13.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:13.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.861][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:13.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:13.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.862][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:13.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:13.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-22 18:26:13.863][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-22 18:26:13.863][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-22 18:26:13.864][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-22 18:26:13.865][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-22 18:26:13.866][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-22 18:26:13.866][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-22 18:26:13.866][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-22 18:26:13.867][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:13.867][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:13.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.868][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:13.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:13.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.869][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:13.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:13.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.869][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-22 18:26:13.870][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-22 18:26:13.870][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-22 18:26:13.870][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-22 18:26:13.872][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-22 18:26:13.872][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-22 18:26:13.872][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-22 18:26:13.872][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-22 18:26:13.873][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:13.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:13.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.874][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:13.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:13.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.875][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:13.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:13.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.876][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-22 18:26:13.876][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-22 18:26:13.876][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-22 18:26:13.876][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-22 18:26:13.878][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-22 18:26:13.878][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-22 18:26:13.878][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-22 18:26:13.879][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-22 18:26:13.879][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:13.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:13.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.880][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:13.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:13.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.881][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:13.881][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:13.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.882][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-22 18:26:13.882][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-22 18:26:13.882][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-22 18:26:13.883][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-22 18:26:13.887][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-22 18:26:13.888][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-22 18:26:13.888][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-22 18:26:13.888][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-22 18:26:13.889][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:13.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:13.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.890][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:13.890][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:13.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.891][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:13.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:13.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-22 18:26:13.892][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-22 18:26:13.892][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-22 18:26:13.892][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-22 18:26:13.894][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-22 18:26:13.894][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-22 18:26:13.894][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-22 18:26:13.895][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-22 18:26:13.895][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:13.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:13.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.896][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:13.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:13.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.897][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:13.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:13.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-22 18:26:13.898][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-22 18:26:13.899][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-22 18:26:13.899][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-22 18:26:13.900][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-22 18:26:13.901][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-22 18:26:13.901][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-22 18:26:13.901][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-22 18:26:13.901][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:13.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:13.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.903][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:13.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:13.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.904][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:13.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:13.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-22 18:26:13.905][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-22 18:26:13.905][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-22 18:26:13.905][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-22 18:26:13.907][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-22 18:26:13.907][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-22 18:26:13.907][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-22 18:26:13.908][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-22 18:26:13.908][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:13.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:13.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.909][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:13.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:13.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.910][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:13.910][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:13.911][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-22 18:26:13.911][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-22 18:26:13.911][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-22 18:26:13.912][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-22 18:26:13.913][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-22 18:26:13.913][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-22 18:26:13.914][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-22 18:26:13.914][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-22 18:26:13.914][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:13.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:13.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.916][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:13.916][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:13.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.917][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:13.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:13.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-22 18:26:13.918][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-22 18:26:13.918][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-22 18:26:13.918][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-22 18:26:13.920][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-22 18:26:13.920][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-22 18:26:13.920][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-22 18:26:13.921][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-22 18:26:13.921][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:13.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:13.922][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.922][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:13.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:13.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.926][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:13.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:13.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-22 18:26:13.928][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-22 18:26:13.928][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-22 18:26:13.928][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-22 18:26:13.930][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-22 18:26:13.930][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-22 18:26:13.930][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-22 18:26:13.930][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-22 18:26:13.931][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:13.931][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:13.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.932][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:13.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:13.932][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.933][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:13.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:13.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-22 18:26:13.934][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-22 18:26:13.934][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-22 18:26:13.935][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-22 18:26:13.936][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-22 18:26:13.937][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-22 18:26:13.937][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-22 18:26:13.937][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-22 18:26:13.937][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:13.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:13.938][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.938][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:13.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:13.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.940][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:13.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:13.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-22 18:26:13.941][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-22 18:26:13.941][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-22 18:26:13.941][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-22 18:26:13.943][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-22 18:26:13.943][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-22 18:26:13.943][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-22 18:26:13.943][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-22 18:26:13.944][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:13.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:13.944][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.945][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:13.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:13.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.946][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.946][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:13.946][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:13.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-22 18:26:13.947][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-22 18:26:13.947][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-22 18:26:13.947][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-22 18:26:13.949][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-22 18:26:13.949][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-22 18:26:13.949][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-22 18:26:13.950][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-22 18:26:13.950][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:13.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:13.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.951][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:13.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:13.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.952][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:13.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:13.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-22 18:26:13.953][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-22 18:26:13.953][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-22 18:26:13.954][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-22 18:26:13.955][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-22 18:26:13.955][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-22 18:26:13.956][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-22 18:26:13.956][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-22 18:26:13.956][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:13.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:13.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.957][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:13.958][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:13.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.958][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:13.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:13.959][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.959][self$getBiodb()$getEntryFields()$get] fields variable is a list.
sched.DEBUG[2025-09-22 18:26:13.969][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-09-22 18:26:13.970][private$cache$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/sched.
fscache.DEBUG[2025-09-22 18:26:13.971][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/sched/80cdc67a2a6332dd4ceb98b7656194b9.content.
sched.DEBUG[2025-09-22 18:26:13.971][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-09-22 18:26:13.973][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-22 18:26:13.973][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-22 18:26:13.973][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-22 18:26:13.975][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-22 18:26:13.975][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-22 18:26:13.975][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-22 18:26:13.976][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-22 18:26:13.976][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:13.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:13.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.977][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:13.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:13.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.978][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:13.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:13.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-22 18:26:13.979][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-22 18:26:13.980][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-22 18:26:13.980][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-22 18:26:13.982][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-22 18:26:13.982][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-22 18:26:13.982][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-22 18:26:13.982][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-22 18:26:13.983][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:13.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:13.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.984][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:13.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:13.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.985][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:13.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:13.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.986][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:13.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:13.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.987][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:13.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:13.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-22 18:26:13.988][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-22 18:26:13.988][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-22 18:26:13.989][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-22 18:26:13.990][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-22 18:26:13.990][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-22 18:26:13.991][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-22 18:26:13.991][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-22 18:26:13.991][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:13.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:13.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.992][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:13.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:13.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.993][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:13.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:13.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.994][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.994][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:13.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:13.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:13.995][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:13.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:13.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:13.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-22 18:26:13.997][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-22 18:26:13.997][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-22 18:26:13.997][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-22 18:26:13.999][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-22 18:26:13.999][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-22 18:26:13.999][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-22 18:26:13.999][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-22 18:26:14.000][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:14.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:14.000][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:14.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:14.001][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:14.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:14.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:14.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:14.002][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:14.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:14.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:14.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:14.003][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:14.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:14.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:14.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:14.007][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:14.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:14.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:14.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-22 18:26:14.008][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-22 18:26:14.008][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-22 18:26:14.009][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-22 18:26:14.010][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-22 18:26:14.010][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-22 18:26:14.011][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-22 18:26:14.011][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-22 18:26:14.011][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:14.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:14.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:14.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:14.012][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:14.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:14.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:14.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:14.014][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:14.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:14.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:14.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-22 18:26:14.015][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-22 18:26:14.015][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-22 18:26:14.015][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-22 18:26:14.017][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-22 18:26:14.017][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-22 18:26:14.017][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-22 18:26:14.018][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-22 18:26:14.018][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:14.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:14.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:14.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:14.019][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:14.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:14.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:14.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:14.020][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:14.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:14.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:14.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-22 18:26:14.021][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-22 18:26:14.021][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-22 18:26:14.022][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-22 18:26:14.023][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-22 18:26:14.023][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-22 18:26:14.024][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-22 18:26:14.024][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-22 18:26:14.024][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:14.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:14.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:14.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:14.025][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:14.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:14.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:14.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:14.026][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:14.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:14.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:14.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-22 18:26:14.028][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-22 18:26:14.028][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-22 18:26:14.028][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-22 18:26:14.030][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-22 18:26:14.030][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-22 18:26:14.030][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-22 18:26:14.030][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-22 18:26:14.031][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:14.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:14.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:14.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:14.032][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:14.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:14.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:14.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:14.033][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:14.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:14.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:14.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-22 18:26:14.034][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-22 18:26:14.034][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-22 18:26:14.035][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-22 18:26:14.036][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-22 18:26:14.037][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-22 18:26:14.037][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-22 18:26:14.037][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-22 18:26:14.037][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:14.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:14.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:14.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:14.038][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:14.039][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:14.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:14.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:14.040][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:14.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:14.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:14.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-22 18:26:14.041][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-22 18:26:14.041][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-22 18:26:14.041][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-22 18:26:14.045][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-22 18:26:14.046][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-22 18:26:14.046][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-22 18:26:14.046][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-22 18:26:14.047][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:14.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:14.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:14.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:14.048][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:14.048][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:14.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:14.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:14.049][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:14.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:14.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:14.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-22 18:26:14.050][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-22 18:26:14.050][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-22 18:26:14.051][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-22 18:26:14.052][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-22 18:26:14.053][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-22 18:26:14.053][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-22 18:26:14.053][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-22 18:26:14.054][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:14.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:14.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:14.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:14.055][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:14.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:14.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:14.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:14.056][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:14.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:14.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:14.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-22 18:26:14.057][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-22 18:26:14.057][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-22 18:26:14.057][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-22 18:26:14.059][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-22 18:26:14.059][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-22 18:26:14.059][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-22 18:26:14.060][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-22 18:26:14.060][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:14.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:14.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:14.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:14.061][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:14.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:14.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:14.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:14.062][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:14.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:14.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:14.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-22 18:26:14.063][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-22 18:26:14.063][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-22 18:26:14.064][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-22 18:26:14.065][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-22 18:26:14.066][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-22 18:26:14.066][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-22 18:26:14.066][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-22 18:26:14.066][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:14.067][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:14.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:14.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:14.067][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:14.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:14.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:14.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:14.068][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:14.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:14.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:14.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-22 18:26:14.069][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-22 18:26:14.070][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-22 18:26:14.070][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-22 18:26:14.071][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-22 18:26:14.072][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-22 18:26:14.072][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-22 18:26:14.072][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-22 18:26:14.073][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:14.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:14.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:14.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:14.074][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:14.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:14.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:14.074][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:14.075][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:14.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:14.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:14.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-22 18:26:14.076][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-22 18:26:14.076][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-22 18:26:14.076][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-22 18:26:14.078][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-22 18:26:14.078][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-22 18:26:14.078][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-22 18:26:14.079][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-22 18:26:14.079][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:14.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:14.079][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:14.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:14.080][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:14.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:14.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:14.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:14.084][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:14.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:14.084][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:14.085][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-22 18:26:14.085][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-22 18:26:14.086][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-22 18:26:14.086][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-22 18:26:14.087][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-22 18:26:14.088][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-22 18:26:14.088][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-22 18:26:14.088][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-22 18:26:14.088][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:14.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:14.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:14.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:14.090][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:14.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:14.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:14.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:14.091][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:14.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:14.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:14.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-22 18:26:14.092][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-22 18:26:14.092][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-22 18:26:14.092][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-22 18:26:14.094][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-22 18:26:14.094][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-22 18:26:14.094][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-22 18:26:14.095][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-22 18:26:14.095][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:14.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:14.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:14.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:14.096][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:14.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:14.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:14.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:14.097][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:14.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:14.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:14.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-22 18:26:14.098][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-22 18:26:14.099][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-22 18:26:14.099][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-22 18:26:14.100][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-22 18:26:14.101][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-22 18:26:14.101][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-22 18:26:14.101][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-22 18:26:14.102][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:14.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:14.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:14.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:14.103][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:14.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:14.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:14.103][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:14.104][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:14.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:14.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:14.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-22 18:26:14.105][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-22 18:26:14.105][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-22 18:26:14.105][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-22 18:26:14.107][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-22 18:26:14.107][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-22 18:26:14.108][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-22 18:26:14.108][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-22 18:26:14.108][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:14.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:14.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:14.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:14.109][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:14.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:14.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:14.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:14.110][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:14.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:14.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:14.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-22 18:26:14.111][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-22 18:26:14.112][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-22 18:26:14.112][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-22 18:26:14.113][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-22 18:26:14.114][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-22 18:26:14.114][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-22 18:26:14.114][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-22 18:26:14.114][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:14.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:14.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:14.115][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:14.116][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:14.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:14.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:14.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:14.117][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:14.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:14.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:14.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:14.126][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2025-09-22 18:26:14.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2025-09-22 18:26:14.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:14.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2025-09-22 18:26:14.130][biodb::testThat]
biodb.INFO [2025-09-22 18:26:14.130][biodb::testThat] Running test function  test_annotateMzValues_input_vector  (" annotateMzValues() accepts a single vector. ").
biodb.INFO [2025-09-22 18:26:14.131][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-09-22 18:26:14.131][biodb::testThat]
biodb.TRACE[2025-09-22 18:26:14.132][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-09-22 18:26:14.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-09-22 18:26:14.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:14.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:14.133][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:14.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:14.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:14.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:14.134][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:14.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:14.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:14.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:14.135][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:14.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:14.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:14.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:14.136][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:14.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:14.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:14.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-22 18:26:14.138][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-22 18:26:14.139][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-22 18:26:14.139][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-22 18:26:14.140][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-22 18:26:14.141][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-22 18:26:14.141][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-22 18:26:14.141][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-09-22 18:26:14.142][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.72*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-09-22 18:26:14.143][private$cache$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/sched.
fscache.DEBUG[2025-09-22 18:26:14.144][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/sched/8fc54eee7e982ce554bee8000d8203f7.content.
sched.DEBUG[2025-09-22 18:26:14.144][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-09-22 18:26:14.145][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-22 18:26:14.145][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-22 18:26:14.145][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-22 18:26:14.147][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-22 18:26:14.147][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-22 18:26:14.147][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-22 18:26:14.148][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-22 18:26:14.148][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:14.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:14.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:14.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:14.149][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:14.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:14.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:14.150][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:14.150][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:14.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:14.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:14.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
sched.DEBUG[2025-09-22 18:26:14.152][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.73*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-09-22 18:26:14.152][private$cache$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/sched.
fscache.DEBUG[2025-09-22 18:26:14.153][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/sched/6def615835d7c1dfccd5a5f135bd2f9d.content.
sched.DEBUG[2025-09-22 18:26:14.153][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-09-22 18:26:14.154][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-22 18:26:14.154][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-22 18:26:14.154][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-22 18:26:14.156][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-22 18:26:14.156][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-22 18:26:14.157][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-22 18:26:14.157][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-22 18:26:14.157][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:14.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:14.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:14.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:14.158][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:14.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:14.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:14.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:14.159][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:14.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:14.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:14.160][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-22 18:26:14.160][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-22 18:26:14.161][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-22 18:26:14.161][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-22 18:26:14.162][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-22 18:26:14.163][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-22 18:26:14.163][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-22 18:26:14.166][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-22 18:26:14.166][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:14.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:14.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:14.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:14.168][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:14.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:14.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:14.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:14.169][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:14.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:14.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:14.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-22 18:26:14.170][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-09-22 18:26:14.171][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-22 18:26:14.171][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-22 18:26:14.171][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-22 18:26:14.173][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-22 18:26:14.173][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-22 18:26:14.173][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-22 18:26:14.174][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-22 18:26:14.174][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-22 18:26:14.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-22 18:26:14.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:14.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:14.175][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-22 18:26:14.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-22 18:26:14.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:14.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:14.176][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-09-22 18:26:14.176][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-09-22 18:26:14.177][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-09-22 18:26:14.177][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-09-22 18:26:14.177][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-09-22 18:26:14.177][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-22 18:26:14.178][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-22 18:26:14.178][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:14.178][ef$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:14.179][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-22 18:26:14.179][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-22 18:26:14.179][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:14.179][ef$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:14.180][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-09-22 18:26:14.180][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-09-22 18:26:14.180][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-22 18:26:14.180][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-22 18:26:14.181][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:14.181][ef$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:14.181][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-09-22 18:26:14.181][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-22 18:26:14.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-22 18:26:14.182][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:14.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:14.182][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-22 18:26:14.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-22 18:26:14.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:14.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:14.184][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-22 18:26:14.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-22 18:26:14.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:14.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:14.188][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [192288].
biodb.DEBUG[2025-09-22 18:26:14.188][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-22 18:26:14.188][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-22 18:26:14.188][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-22 18:26:14.190][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-22 18:26:14.190][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-22 18:26:14.191][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-22 18:26:14.191][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-22 18:26:14.191][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-22 18:26:14.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-22 18:26:14.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:14.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:14.192][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-22 18:26:14.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-22 18:26:14.193][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:14.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:14.194][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-09-22 18:26:14.194][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-09-22 18:26:14.194][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-09-22 18:26:14.194][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-09-22 18:26:14.194][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-09-22 18:26:14.195][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-22 18:26:14.195][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-22 18:26:14.195][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:14.196][ef$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:14.196][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-22 18:26:14.196][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-22 18:26:14.196][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:14.197][ef$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:14.197][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-09-22 18:26:14.197][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-09-22 18:26:14.197][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-22 18:26:14.198][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-22 18:26:14.198][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:14.198][ef$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:14.198][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-09-22 18:26:14.199][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-22 18:26:14.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-22 18:26:14.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:14.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:14.200][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-22 18:26:14.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-22 18:26:14.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:14.203][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:14.203][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-22 18:26:14.204][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-22 18:26:14.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:14.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:14.205][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2025-09-22 18:26:14.205][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-22 18:26:14.206][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-22 18:26:14.206][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-22 18:26:14.208][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-22 18:26:14.208][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-22 18:26:14.208][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-22 18:26:14.208][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-22 18:26:14.209][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-22 18:26:14.209][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-22 18:26:14.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:14.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:14.210][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-22 18:26:14.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-22 18:26:14.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:14.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:14.211][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-09-22 18:26:14.211][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-09-22 18:26:14.211][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-09-22 18:26:14.212][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-09-22 18:26:14.212][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-09-22 18:26:14.212][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-22 18:26:14.212][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-22 18:26:14.213][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:14.213][ef$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:14.213][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-22 18:26:14.213][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-22 18:26:14.214][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:14.214][ef$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:14.214][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-09-22 18:26:14.214][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-09-22 18:26:14.215][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-22 18:26:14.215][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-22 18:26:14.215][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:14.216][ef$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:14.216][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-09-22 18:26:14.216][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-22 18:26:14.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-22 18:26:14.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:14.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:14.217][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-22 18:26:14.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-22 18:26:14.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:14.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:14.218][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-22 18:26:14.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-22 18:26:14.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:14.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:14.219][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [209892].
biodb.DEBUG[2025-09-22 18:26:14.220][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-09-22 18:26:14.220][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2025-09-22 18:26:14.223][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:14.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:14.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:14.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:14.224][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:14.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:14.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:14.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:14.225][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:14.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:14.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:14.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:14.226][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:14.227][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:14.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:14.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-22 18:26:14.248][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-22 18:26:14.248][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-22 18:26:14.249][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-22 18:26:14.251][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-22 18:26:14.251][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-22 18:26:14.251][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-22 18:26:14.251][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-09-22 18:26:14.252][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-09-22 18:26:14.253][private$cache$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/sched.
fscache.DEBUG[2025-09-22 18:26:14.254][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/sched/2e865a03592d6effdf242ff63104f35a.content.
sched.DEBUG[2025-09-22 18:26:14.254][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
sched.DEBUG[2025-09-22 18:26:14.255][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-09-22 18:26:14.256][private$cache$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/sched.
fscache.DEBUG[2025-09-22 18:26:14.257][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/sched/f0c73645ca32490f91d503a462d812b2.content.
sched.DEBUG[2025-09-22 18:26:14.257][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-09-22 18:26:14.258][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-22 18:26:14.258][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-22 18:26:14.259][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-22 18:26:14.260][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-22 18:26:14.261][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-22 18:26:14.261][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-22 18:26:14.261][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-22 18:26:14.261][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:14.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:14.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:14.262][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:14.263][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:14.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:14.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:14.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:14.264][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:14.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:14.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:14.265][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-22 18:26:14.265][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-22 18:26:14.265][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-22 18:26:14.265][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-22 18:26:14.267][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-22 18:26:14.267][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-22 18:26:14.267][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-22 18:26:14.268][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-22 18:26:14.268][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:14.268][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:14.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:14.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:14.269][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:14.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:14.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:14.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:14.270][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:14.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:14.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:14.271][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-22 18:26:14.272][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-22 18:26:14.272][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-22 18:26:14.272][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-22 18:26:14.274][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-22 18:26:14.274][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-22 18:26:14.274][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-22 18:26:14.275][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-22 18:26:14.275][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:14.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:14.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:14.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:14.276][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:14.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:14.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:14.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:14.277][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:14.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:14.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:14.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-22 18:26:14.290][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-09-22 18:26:14.298][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-22 18:26:14.298][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-22 18:26:14.299][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-22 18:26:14.300][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-22 18:26:14.301][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-22 18:26:14.301][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-22 18:26:14.301][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-22 18:26:14.302][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-22 18:26:14.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-22 18:26:14.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:14.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:14.303][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-22 18:26:14.303][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-22 18:26:14.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:14.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:14.304][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-09-22 18:26:14.304][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-09-22 18:26:14.304][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-09-22 18:26:14.305][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-09-22 18:26:14.305][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-09-22 18:26:14.305][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-22 18:26:14.305][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-22 18:26:14.306][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:14.306][ef$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:14.306][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-22 18:26:14.306][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-22 18:26:14.307][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:14.307][ef$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:14.307][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-09-22 18:26:14.307][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-09-22 18:26:14.308][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-22 18:26:14.308][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-22 18:26:14.308][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:14.309][ef$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:14.309][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-09-22 18:26:14.309][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-22 18:26:14.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-22 18:26:14.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:14.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:14.310][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-22 18:26:14.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-22 18:26:14.311][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:14.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:14.311][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-22 18:26:14.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-22 18:26:14.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:14.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:14.312][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4648].
biodb.DEBUG[2025-09-22 18:26:14.313][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-22 18:26:14.313][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-22 18:26:14.313][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-22 18:26:14.317][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-22 18:26:14.318][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-22 18:26:14.318][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-22 18:26:14.319][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-22 18:26:14.330][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-22 18:26:14.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-22 18:26:14.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:14.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:14.332][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-22 18:26:14.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-22 18:26:14.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:14.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:14.340][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-09-22 18:26:14.340][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-09-22 18:26:14.340][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-09-22 18:26:14.341][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-09-22 18:26:14.341][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-09-22 18:26:14.341][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-22 18:26:14.341][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-22 18:26:14.342][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:14.342][ef$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:14.342][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-22 18:26:14.343][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-22 18:26:14.343][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:14.343][ef$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:14.343][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-09-22 18:26:14.347][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-09-22 18:26:14.347][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-22 18:26:14.347][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-22 18:26:14.347][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:14.348][ef$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:14.348][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-09-22 18:26:14.348][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-22 18:26:14.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-22 18:26:14.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:14.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:14.349][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-22 18:26:14.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-22 18:26:14.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:14.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:14.350][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-22 18:26:14.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-22 18:26:14.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:14.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:14.352][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2025-09-22 18:26:14.352][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-22 18:26:14.352][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-22 18:26:14.352][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-22 18:26:14.354][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-22 18:26:14.354][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-22 18:26:14.355][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-22 18:26:14.355][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-22 18:26:14.355][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-22 18:26:14.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-22 18:26:14.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:14.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:14.356][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-22 18:26:14.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-22 18:26:14.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:14.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:14.357][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-09-22 18:26:14.360][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-09-22 18:26:14.360][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-09-22 18:26:14.361][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-09-22 18:26:14.361][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-09-22 18:26:14.362][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-22 18:26:14.362][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-22 18:26:14.362][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:14.363][ef$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:14.363][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-22 18:26:14.363][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-22 18:26:14.363][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:14.364][ef$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:14.364][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-09-22 18:26:14.364][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-09-22 18:26:14.364][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-22 18:26:14.365][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-22 18:26:14.365][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:14.365][ef$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:14.365][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-09-22 18:26:14.366][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-22 18:26:14.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-22 18:26:14.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:14.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:14.367][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-22 18:26:14.367][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-22 18:26:14.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:14.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:14.368][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-22 18:26:14.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-22 18:26:14.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:14.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:14.369][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [62447].
biodb.DEBUG[2025-09-22 18:26:14.369][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-09-22 18:26:14.370][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2025-09-22 18:26:14.372][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2025-09-22 18:26:14.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2025-09-22 18:26:14.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:14.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2025-09-22 18:26:14.375][biodb::testThat]
biodb.INFO [2025-09-22 18:26:14.375][biodb::testThat] Running test function  test_annotateMzValues_ppm_tol  (" ppm tolerance works in annotateMzValues() ").
biodb.INFO [2025-09-22 18:26:14.375][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-09-22 18:26:14.375][biodb::testThat]
biodb.TRACE[2025-09-22 18:26:14.376][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-09-22 18:26:14.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-09-22 18:26:14.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:14.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:14.378][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:14.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:14.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:14.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:14.379][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:14.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:14.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:14.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:14.380][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:14.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:14.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:14.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:14.381][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:14.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:14.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:14.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-22 18:26:14.383][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-22 18:26:14.383][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-22 18:26:14.383][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-22 18:26:14.385][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-22 18:26:14.385][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-22 18:26:14.385][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-22 18:26:14.386][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-09-22 18:26:14.386][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.72*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-09-22 18:26:14.387][private$cache$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/sched.
fscache.DEBUG[2025-09-22 18:26:14.388][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/sched/8fc54eee7e982ce554bee8000d8203f7.content.
sched.DEBUG[2025-09-22 18:26:14.388][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-09-22 18:26:14.389][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-22 18:26:14.389][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-22 18:26:14.390][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-22 18:26:14.391][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-22 18:26:14.392][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-22 18:26:14.392][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-22 18:26:14.392][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-22 18:26:14.393][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:14.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:14.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:14.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:14.394][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:14.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:14.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:14.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:14.395][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:14.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:14.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:14.395][self$getBiodb()$getEntryFields()$get] fields variable is a list.
sched.DEBUG[2025-09-22 18:26:14.396][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.73*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-09-22 18:26:14.397][private$cache$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/sched.
fscache.DEBUG[2025-09-22 18:26:14.400][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/sched/6def615835d7c1dfccd5a5f135bd2f9d.content.
sched.DEBUG[2025-09-22 18:26:14.400][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-09-22 18:26:14.401][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-22 18:26:14.401][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-22 18:26:14.402][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-22 18:26:14.404][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-22 18:26:14.404][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-22 18:26:14.404][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-22 18:26:14.404][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-22 18:26:14.405][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:14.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:14.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:14.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:14.406][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:14.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:14.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:14.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:14.407][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:14.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:14.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:14.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-22 18:26:14.408][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-22 18:26:14.408][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-22 18:26:14.408][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-22 18:26:14.410][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-22 18:26:14.410][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-22 18:26:14.410][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-22 18:26:14.411][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-22 18:26:14.411][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:14.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:14.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:14.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:14.412][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:14.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:14.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:14.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:14.413][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:14.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:14.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:14.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-22 18:26:14.414][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-09-22 18:26:14.415][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-22 18:26:14.415][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-22 18:26:14.415][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-22 18:26:14.417][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-22 18:26:14.417][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-22 18:26:14.417][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-22 18:26:14.417][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-22 18:26:14.418][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-22 18:26:14.418][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-22 18:26:14.418][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:14.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:14.419][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-22 18:26:14.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-22 18:26:14.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:14.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:14.420][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-09-22 18:26:14.420][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-09-22 18:26:14.420][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-09-22 18:26:14.421][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-09-22 18:26:14.421][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-09-22 18:26:14.421][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-22 18:26:14.421][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-22 18:26:14.422][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:14.422][ef$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:14.422][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-22 18:26:14.422][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-22 18:26:14.423][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:14.423][ef$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:14.423][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-09-22 18:26:14.423][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-09-22 18:26:14.424][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-22 18:26:14.424][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-22 18:26:14.424][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:14.424][ef$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:14.425][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-09-22 18:26:14.425][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-22 18:26:14.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-22 18:26:14.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:14.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:14.426][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-22 18:26:14.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-22 18:26:14.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:14.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:14.427][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-22 18:26:14.427][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-22 18:26:14.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:14.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:14.428][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [192288].
biodb.DEBUG[2025-09-22 18:26:14.428][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-22 18:26:14.429][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-22 18:26:14.429][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-22 18:26:14.430][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-22 18:26:14.431][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-22 18:26:14.431][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-22 18:26:14.431][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-22 18:26:14.431][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-22 18:26:14.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-22 18:26:14.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:14.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:14.433][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-22 18:26:14.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-22 18:26:14.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:14.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:14.434][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-09-22 18:26:14.436][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-09-22 18:26:14.437][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-09-22 18:26:14.437][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-09-22 18:26:14.438][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-09-22 18:26:14.438][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-22 18:26:14.439][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-22 18:26:14.439][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:14.439][ef$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:14.440][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-22 18:26:14.440][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-22 18:26:14.440][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:14.440][ef$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:14.441][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-09-22 18:26:14.441][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-09-22 18:26:14.441][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-22 18:26:14.441][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-22 18:26:14.442][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:14.442][ef$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:14.442][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-09-22 18:26:14.442][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-22 18:26:14.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-22 18:26:14.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:14.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:14.444][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-22 18:26:14.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-22 18:26:14.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:14.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:14.445][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-22 18:26:14.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-22 18:26:14.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:14.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:14.446][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2025-09-22 18:26:14.446][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-22 18:26:14.446][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-22 18:26:14.447][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-22 18:26:14.448][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-22 18:26:14.448][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-22 18:26:14.449][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-22 18:26:14.449][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-22 18:26:14.449][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-22 18:26:14.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-22 18:26:14.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:14.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:14.450][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-22 18:26:14.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-22 18:26:14.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:14.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:14.451][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-09-22 18:26:14.452][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-09-22 18:26:14.452][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-09-22 18:26:14.452][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-09-22 18:26:14.452][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-09-22 18:26:14.453][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-22 18:26:14.453][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-22 18:26:14.453][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:14.453][ef$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:14.454][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-22 18:26:14.454][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-22 18:26:14.454][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:14.454][ef$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:14.455][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-09-22 18:26:14.455][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-09-22 18:26:14.455][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-22 18:26:14.456][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-22 18:26:14.456][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:14.456][ef$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:14.456][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-09-22 18:26:14.457][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-22 18:26:14.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-22 18:26:14.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:14.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:14.458][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-22 18:26:14.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-22 18:26:14.458][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:14.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:14.459][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-22 18:26:14.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-22 18:26:14.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:14.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:14.460][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [209892].
biodb.DEBUG[2025-09-22 18:26:14.460][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-09-22 18:26:14.460][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2025-09-22 18:26:14.463][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:14.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:14.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:14.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:14.464][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:14.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:14.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:14.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:14.465][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:14.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:14.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:14.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:14.466][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:14.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:14.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:14.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-22 18:26:14.468][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-22 18:26:14.469][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-22 18:26:14.469][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-22 18:26:14.470][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-22 18:26:14.471][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-22 18:26:14.471][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-22 18:26:14.544][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-09-22 18:26:14.545][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-09-22 18:26:14.546][private$cache$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/sched.
fscache.DEBUG[2025-09-22 18:26:14.547][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/sched/2e865a03592d6effdf242ff63104f35a.content.
sched.DEBUG[2025-09-22 18:26:14.547][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
sched.DEBUG[2025-09-22 18:26:14.548][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-09-22 18:26:14.549][private$cache$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/sched.
fscache.DEBUG[2025-09-22 18:26:14.550][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/sched/f0c73645ca32490f91d503a462d812b2.content.
sched.DEBUG[2025-09-22 18:26:14.550][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-09-22 18:26:14.551][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-22 18:26:14.551][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-22 18:26:14.551][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-22 18:26:14.553][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-22 18:26:14.553][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-22 18:26:14.554][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-22 18:26:14.554][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-22 18:26:14.554][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:14.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:14.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:14.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:14.555][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:14.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:14.556][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:14.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:14.556][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:14.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:14.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:14.557][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-22 18:26:14.557][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-22 18:26:14.558][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-22 18:26:14.558][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-22 18:26:14.559][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-22 18:26:14.560][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-22 18:26:14.560][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-22 18:26:14.560][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-22 18:26:14.560][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:14.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:14.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:14.561][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:14.562][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:14.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:14.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:14.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:14.563][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:14.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:14.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:14.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-22 18:26:14.564][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-22 18:26:14.564][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-22 18:26:14.564][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-22 18:26:14.565][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-22 18:26:14.566][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-22 18:26:14.566][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-22 18:26:14.566][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-22 18:26:14.567][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:14.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:14.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:14.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:14.568][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:14.568][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:14.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:14.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:14.569][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:14.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:14.569][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:14.569][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-22 18:26:14.570][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-09-22 18:26:14.570][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-22 18:26:14.570][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-22 18:26:14.571][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-22 18:26:14.572][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-22 18:26:14.572][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-22 18:26:14.573][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-22 18:26:14.573][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-22 18:26:14.573][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-22 18:26:14.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-22 18:26:14.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:14.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:14.575][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-22 18:26:14.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-22 18:26:14.575][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:14.575][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:14.576][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-09-22 18:26:14.576][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-09-22 18:26:14.576][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-09-22 18:26:14.576][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-09-22 18:26:14.577][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-09-22 18:26:14.577][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-22 18:26:14.577][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-22 18:26:14.577][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:14.578][ef$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:14.578][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-22 18:26:14.578][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-22 18:26:14.578][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:14.579][ef$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:14.579][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-09-22 18:26:14.579][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-09-22 18:26:14.579][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-22 18:26:14.580][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-22 18:26:14.580][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:14.580][ef$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:14.581][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-09-22 18:26:14.581][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-22 18:26:14.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-22 18:26:14.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:14.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:14.582][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-22 18:26:14.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-22 18:26:14.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:14.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:14.583][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-22 18:26:14.583][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-22 18:26:14.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:14.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:14.584][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4648].
biodb.DEBUG[2025-09-22 18:26:14.584][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-22 18:26:14.585][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-22 18:26:14.585][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-22 18:26:14.587][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-22 18:26:14.587][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-22 18:26:14.587][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-22 18:26:14.588][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-22 18:26:14.588][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-22 18:26:14.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-22 18:26:14.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:14.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:14.589][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-22 18:26:14.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-22 18:26:14.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:14.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:14.590][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-09-22 18:26:14.591][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-09-22 18:26:14.591][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-09-22 18:26:14.591][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-09-22 18:26:14.592][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-09-22 18:26:14.592][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-22 18:26:14.592][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-22 18:26:14.592][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:14.593][ef$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:14.593][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-22 18:26:14.593][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-22 18:26:14.594][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:14.594][ef$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:14.594][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-09-22 18:26:14.594][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-09-22 18:26:14.595][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-22 18:26:14.595][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-22 18:26:14.595][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:14.596][ef$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:14.596][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-09-22 18:26:14.596][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-22 18:26:14.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-22 18:26:14.597][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:14.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:14.597][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-22 18:26:14.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-22 18:26:14.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:14.598][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:14.599][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-22 18:26:14.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-22 18:26:14.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:14.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:14.600][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2025-09-22 18:26:14.600][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-22 18:26:14.600][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-22 18:26:14.601][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-22 18:26:14.602][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-22 18:26:14.603][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-22 18:26:14.603][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-22 18:26:14.603][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-22 18:26:14.604][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-22 18:26:14.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-22 18:26:14.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:14.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:14.605][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-22 18:26:14.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-22 18:26:14.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:14.606][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:14.606][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-09-22 18:26:14.606][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-09-22 18:26:14.607][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-09-22 18:26:14.607][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-09-22 18:26:14.607][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-09-22 18:26:14.607][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-22 18:26:14.608][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-22 18:26:14.608][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:14.608][ef$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:14.609][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-22 18:26:14.609][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-22 18:26:14.609][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:14.609][ef$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:14.610][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-09-22 18:26:14.610][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-09-22 18:26:14.610][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-22 18:26:14.611][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-22 18:26:14.611][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:14.611][ef$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:14.611][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-09-22 18:26:14.612][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-22 18:26:14.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-22 18:26:14.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:14.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:14.613][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-22 18:26:14.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-22 18:26:14.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:14.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:14.614][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-22 18:26:14.614][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-22 18:26:14.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:14.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:14.615][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [62447].
biodb.DEBUG[2025-09-22 18:26:14.616][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-09-22 18:26:14.616][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2025-09-22 18:26:14.619][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2025-09-22 18:26:14.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2025-09-22 18:26:14.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:14.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2025-09-22 18:26:14.621][biodb::testThat]
biodb.INFO [2025-09-22 18:26:14.622][biodb::testThat] Running test function  test_annotateMzValues_input_dataframe_untouched  (" Input data frame is not modified by annotateMzValues() ").
biodb.INFO [2025-09-22 18:26:14.622][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-09-22 18:26:14.622][biodb::testThat]
biodb.TRACE[2025-09-22 18:26:14.623][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-09-22 18:26:14.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-09-22 18:26:14.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:14.624][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:14.625][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:14.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:14.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:14.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:14.626][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:14.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:14.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:14.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:14.627][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:14.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:14.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:14.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:14.628][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:14.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:14.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:14.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-22 18:26:14.631][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-22 18:26:14.631][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-22 18:26:14.631][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-22 18:26:14.633][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-22 18:26:14.633][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-22 18:26:14.634][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-22 18:26:14.634][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-09-22 18:26:14.635][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.72*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-09-22 18:26:14.636][private$cache$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/sched.
fscache.DEBUG[2025-09-22 18:26:14.636][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/sched/8fc54eee7e982ce554bee8000d8203f7.content.
sched.DEBUG[2025-09-22 18:26:14.637][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-09-22 18:26:14.640][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-22 18:26:14.640][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-22 18:26:14.640][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-22 18:26:14.642][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-22 18:26:14.642][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-22 18:26:14.642][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-22 18:26:14.643][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-22 18:26:14.643][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:14.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:14.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:14.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:14.644][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:14.644][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:14.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:14.645][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:14.645][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:14.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:14.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:14.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
sched.DEBUG[2025-09-22 18:26:14.646][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.73*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-09-22 18:26:14.647][private$cache$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/sched.
fscache.DEBUG[2025-09-22 18:26:14.648][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/sched/6def615835d7c1dfccd5a5f135bd2f9d.content.
sched.DEBUG[2025-09-22 18:26:14.648][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-09-22 18:26:14.649][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-22 18:26:14.649][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-22 18:26:14.649][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-22 18:26:14.651][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-22 18:26:14.651][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-22 18:26:14.652][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-22 18:26:14.652][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-22 18:26:14.652][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:14.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:14.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:14.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:14.653][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:14.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:14.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:14.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:14.654][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:14.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:14.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:14.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-22 18:26:14.655][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-22 18:26:14.655][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-22 18:26:14.656][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-22 18:26:14.657][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-22 18:26:14.658][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-22 18:26:14.658][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-22 18:26:14.658][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-22 18:26:14.658][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:14.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:14.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:14.659][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:14.659][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:14.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:14.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:14.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:14.660][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:14.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:14.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:14.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-22 18:26:14.661][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-09-22 18:26:14.662][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-22 18:26:14.662][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-22 18:26:14.662][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-22 18:26:14.664][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-22 18:26:14.664][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-22 18:26:14.664][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-22 18:26:14.665][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-22 18:26:14.665][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-22 18:26:14.665][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-22 18:26:14.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:14.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:14.666][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-22 18:26:14.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-22 18:26:14.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:14.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:14.667][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-09-22 18:26:14.667][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-09-22 18:26:14.668][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-09-22 18:26:14.668][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-09-22 18:26:14.668][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-09-22 18:26:14.668][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-22 18:26:14.669][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-22 18:26:14.669][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:14.669][ef$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:14.669][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-22 18:26:14.670][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-22 18:26:14.670][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:14.670][ef$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:14.670][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-09-22 18:26:14.671][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-09-22 18:26:14.671][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-22 18:26:14.671][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-22 18:26:14.671][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:14.672][ef$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:14.672][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-09-22 18:26:14.672][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-22 18:26:14.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-22 18:26:14.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:14.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:14.673][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-22 18:26:14.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-22 18:26:14.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:14.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:14.674][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-22 18:26:14.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-22 18:26:14.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:14.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:14.675][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [192288].
biodb.DEBUG[2025-09-22 18:26:14.676][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-22 18:26:14.676][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-22 18:26:14.676][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-22 18:26:14.678][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-22 18:26:14.678][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-22 18:26:14.679][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-22 18:26:14.679][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-22 18:26:14.679][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-22 18:26:14.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-22 18:26:14.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:14.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:14.680][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-22 18:26:14.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-22 18:26:14.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:14.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:14.681][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-09-22 18:26:14.682][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-09-22 18:26:14.682][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-09-22 18:26:14.682][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-09-22 18:26:14.682][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-09-22 18:26:14.683][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-22 18:26:14.683][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-22 18:26:14.683][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:14.683][ef$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:14.684][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-22 18:26:14.684][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-22 18:26:14.684][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:14.684][ef$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:14.685][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-09-22 18:26:14.685][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-09-22 18:26:14.685][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-22 18:26:14.685][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-22 18:26:14.686][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:14.686][ef$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:14.686][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-09-22 18:26:14.686][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-22 18:26:14.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-22 18:26:14.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:14.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:14.687][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-22 18:26:14.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-22 18:26:14.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:14.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:14.688][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-22 18:26:14.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-22 18:26:14.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:14.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:14.690][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2025-09-22 18:26:14.690][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-22 18:26:14.690][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-22 18:26:14.690][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-22 18:26:14.692][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-22 18:26:14.692][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-22 18:26:14.693][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-22 18:26:14.693][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-22 18:26:14.693][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-22 18:26:14.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-22 18:26:14.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:14.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:14.694][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-22 18:26:14.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-22 18:26:14.695][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:14.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:14.695][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-09-22 18:26:14.695][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-09-22 18:26:14.696][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-09-22 18:26:14.696][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-09-22 18:26:14.696][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-09-22 18:26:14.696][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-22 18:26:14.697][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-22 18:26:14.697][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:14.697][ef$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:14.698][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-22 18:26:14.698][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-22 18:26:14.698][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:14.699][ef$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:14.699][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-09-22 18:26:14.699][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-09-22 18:26:14.699][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-22 18:26:14.700][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-22 18:26:14.700][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:14.700][ef$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:14.700][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-09-22 18:26:14.701][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-22 18:26:14.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-22 18:26:14.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:14.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:14.702][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-22 18:26:14.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-22 18:26:14.702][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:14.703][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:14.703][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-22 18:26:14.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-22 18:26:14.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:14.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:14.704][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [209892].
biodb.DEBUG[2025-09-22 18:26:14.704][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-09-22 18:26:14.705][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2025-09-22 18:26:14.711][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:14.711][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:14.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:14.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:14.712][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:14.713][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:14.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:14.713][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:14.713][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:14.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:14.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:14.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:14.714][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:14.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:14.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:14.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-22 18:26:14.717][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-22 18:26:14.717][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-22 18:26:14.717][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-22 18:26:14.719][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-22 18:26:14.719][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-22 18:26:14.719][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-22 18:26:14.719][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-09-22 18:26:14.720][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-09-22 18:26:14.721][private$cache$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/sched.
fscache.DEBUG[2025-09-22 18:26:14.722][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/sched/2e865a03592d6effdf242ff63104f35a.content.
sched.DEBUG[2025-09-22 18:26:14.722][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
sched.DEBUG[2025-09-22 18:26:14.723][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-09-22 18:26:14.724][private$cache$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/sched.
fscache.DEBUG[2025-09-22 18:26:14.724][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/sched/f0c73645ca32490f91d503a462d812b2.content.
sched.DEBUG[2025-09-22 18:26:14.725][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-09-22 18:26:14.725][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-22 18:26:14.726][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-22 18:26:14.726][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-22 18:26:14.727][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-22 18:26:14.730][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-22 18:26:14.730][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-22 18:26:14.730][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-22 18:26:14.731][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:14.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:14.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:14.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:14.732][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:14.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:14.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:14.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:14.733][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:14.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:14.733][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:14.733][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-22 18:26:14.734][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-22 18:26:14.734][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-22 18:26:14.734][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-22 18:26:14.736][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-22 18:26:14.736][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-22 18:26:14.736][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-22 18:26:14.736][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-22 18:26:14.737][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:14.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:14.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:14.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:14.738][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:14.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:14.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:14.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:14.739][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:14.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:14.739][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:14.740][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-22 18:26:14.740][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-22 18:26:14.740][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-22 18:26:14.740][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-22 18:26:14.742][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-22 18:26:14.742][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-22 18:26:14.742][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-22 18:26:14.742][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-22 18:26:14.743][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:14.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:14.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:14.744][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:14.744][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:14.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:14.744][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:14.745][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:14.745][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:14.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:14.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:14.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-22 18:26:14.746][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-09-22 18:26:14.746][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-22 18:26:14.747][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-22 18:26:14.747][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-22 18:26:14.748][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-22 18:26:14.749][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-22 18:26:14.749][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-22 18:26:14.749][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-22 18:26:14.749][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-22 18:26:14.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-22 18:26:14.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:14.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:14.751][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-22 18:26:14.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-22 18:26:14.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:14.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:14.752][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-09-22 18:26:14.752][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-09-22 18:26:14.752][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-09-22 18:26:14.752][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-09-22 18:26:14.752][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-09-22 18:26:14.753][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-22 18:26:14.753][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-22 18:26:14.753][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:14.754][ef$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:14.754][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-22 18:26:14.754][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-22 18:26:14.754][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:14.754][ef$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:14.755][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-09-22 18:26:14.755][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-09-22 18:26:14.755][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-22 18:26:14.755][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-22 18:26:14.756][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:14.756][ef$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:14.756][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-09-22 18:26:14.756][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-22 18:26:14.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-22 18:26:14.757][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:14.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:14.758][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-22 18:26:14.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-22 18:26:14.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:14.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:14.759][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-22 18:26:14.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-22 18:26:14.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:14.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:14.760][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4648].
biodb.DEBUG[2025-09-22 18:26:14.760][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-22 18:26:14.760][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-22 18:26:14.760][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-22 18:26:14.762][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-22 18:26:14.762][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-22 18:26:14.763][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-22 18:26:14.763][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-22 18:26:14.763][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-22 18:26:14.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-22 18:26:14.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:14.764][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:14.764][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-22 18:26:14.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-22 18:26:14.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:14.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:14.765][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-09-22 18:26:14.766][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-09-22 18:26:14.766][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-09-22 18:26:14.766][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-09-22 18:26:14.766][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-09-22 18:26:14.767][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-22 18:26:14.767][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-22 18:26:14.767][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:14.768][ef$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:14.768][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-22 18:26:14.768][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-22 18:26:14.768][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:14.769][ef$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:14.769][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-09-22 18:26:14.769][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-09-22 18:26:14.769][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-22 18:26:14.770][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-22 18:26:14.770][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:14.770][ef$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:14.770][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-09-22 18:26:14.771][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-22 18:26:14.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-22 18:26:14.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:14.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:14.772][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-22 18:26:14.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-22 18:26:14.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:14.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:14.773][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-22 18:26:14.773][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-22 18:26:14.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:14.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:14.774][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2025-09-22 18:26:14.774][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-22 18:26:14.775][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-22 18:26:14.775][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-22 18:26:14.777][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-22 18:26:14.777][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-22 18:26:14.777][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-22 18:26:14.777][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-22 18:26:14.778][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-22 18:26:14.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-22 18:26:14.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:14.778][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:14.779][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-22 18:26:14.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-22 18:26:14.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:14.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:14.780][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-09-22 18:26:14.780][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-09-22 18:26:14.780][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-09-22 18:26:14.781][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-09-22 18:26:14.781][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-09-22 18:26:14.781][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-22 18:26:14.781][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-22 18:26:14.782][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:14.782][ef$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:14.782][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-22 18:26:14.782][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-22 18:26:14.783][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:14.783][ef$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:14.783][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-09-22 18:26:14.783][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-09-22 18:26:14.784][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-22 18:26:14.784][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-22 18:26:14.784][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:14.784][ef$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:14.785][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-09-22 18:26:14.785][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-22 18:26:14.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-22 18:26:14.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:14.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:14.786][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-22 18:26:14.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-22 18:26:14.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:14.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:14.787][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-22 18:26:14.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-22 18:26:14.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:14.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:14.788][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [62447].
biodb.DEBUG[2025-09-22 18:26:14.788][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-09-22 18:26:14.789][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2025-09-22 18:26:14.796][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2025-09-22 18:26:14.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2025-09-22 18:26:14.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:14.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2025-09-22 18:26:14.798][biodb::testThat]
biodb.INFO [2025-09-22 18:26:14.798][biodb::testThat] Running test function  test.wrong.entry  (" Wrong entry gives NULL ").
biodb.INFO [2025-09-22 18:26:14.799][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-09-22 18:26:14.799][biodb::testThat]
biodb.DEBUG[2025-09-22 18:26:14.799][private$loadEntries] Creating entries from ids [1]: "WRONGA".
biodb.DEBUG[2025-09-22 18:26:14.800][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-09-22 18:26:14.800][cch$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-09-22 18:26:14.801][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/WRONGA.xml.
biodb.DEBUG[2025-09-22 18:26:14.801][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-09-22 18:26:14.802][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-09-22 18:26:14.802][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-09-22 18:26:14.803][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-22 18:26:14.803][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-22 18:26:14.803][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-22 18:26:14.805][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-22 18:26:14.805][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-22 18:26:14.806][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-22 18:26:14.806][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-22 18:26:14.807][ef$get] Asked field names are: accession.
biodb.TRACE[2025-09-22 18:26:14.807][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-22 18:26:14.807][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:14.807][ef$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:14.808][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-22 18:26:14.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-22 18:26:14.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:14.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:14.809][ef$get] Asked field names are: charge.
biodb.TRACE[2025-09-22 18:26:14.809][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-09-22 18:26:14.809][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:14.810][ef$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:14.810][ef$get] Asked field names are: formula.
biodb.TRACE[2025-09-22 18:26:14.810][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-22 18:26:14.811][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:14.811][ef$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:14.811][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-09-22 18:26:14.812][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-22 18:26:14.812][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:14.812][ef$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:14.812][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-22 18:26:14.813][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-22 18:26:14.813][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:14.813][ef$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:14.814][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-09-22 18:26:14.814][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-09-22 18:26:14.814][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:14.814][ef$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:14.815][ef$get] Asked field names are: mass.
biodb.TRACE[2025-09-22 18:26:14.815][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:14.815][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:14.815][ef$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:14.816][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:14.816][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:14.819][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:14.819][ef$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:14.819][ef$get] Asked field names are: name.
biodb.TRACE[2025-09-22 18:26:14.820][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-09-22 18:26:14.820][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:14.820][ef$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:14.820][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-09-22 18:26:14.821][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-09-22 18:26:14.821][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:14.821][ef$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:14.822][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-09-22 18:26:14.822][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-22 18:26:14.822][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:14.822][ef$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:14.823][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-22 18:26:14.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-22 18:26:14.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:14.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:14.824][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-22 18:26:14.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-22 18:26:14.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:14.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:14.825][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-22 18:26:14.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-22 18:26:14.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:14.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:14.826][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-22 18:26:14.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-22 18:26:14.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:14.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:14.827][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-22 18:26:14.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-22 18:26:14.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:14.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:14.828][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-22 18:26:14.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-22 18:26:14.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:14.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:14.829][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-22 18:26:14.829][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-22 18:26:14.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:14.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:14.830][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-22 18:26:14.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-22 18:26:14.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:14.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:14.831][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-22 18:26:14.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-22 18:26:14.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:14.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:14.832][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-22 18:26:14.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-22 18:26:14.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:14.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-22 18:26:14.833][self$createEntryFromContent] Accession numbers: .
biodb.DEBUG[2025-09-22 18:26:14.833][self$createEntryFromContent] Found 1 entry/ies without an accession number. Set it/them to NULL.
biodb.INFO [2025-09-22 18:26:14.836][biodb::testThat]
biodb.INFO [2025-09-22 18:26:14.836][biodb::testThat] Running test function  test.wrong.entry.among.good.ones  (" One wrong entry does not block the retrieval of good ones ").
biodb.INFO [2025-09-22 18:26:14.837][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-09-22 18:26:14.837][biodb::testThat]
biodb.DEBUG[2025-09-22 18:26:14.840][function(conn, opt)] IDS: [4]: "WRONGB, 15440, 2528, 7799"
biodb.DEBUG[2025-09-22 18:26:14.840][private$loadEntries] Creating entries from ids [3]: "WRONGB, 2528, 7799".
biodb.DEBUG[2025-09-22 18:26:14.841][conn$getEntryContent] Get ChEBI entry content(s) for 3 id(s)...
fscache.INFO [2025-09-22 18:26:14.841][cch$loadContents] Load 3 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-09-22 18:26:14.842][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/WRONGB.xml.
fscache.DEBUG[2025-09-22 18:26:14.843][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/2528.xml.
fscache.DEBUG[2025-09-22 18:26:14.845][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7799.xml.
biodb.DEBUG[2025-09-22 18:26:14.845][conn$getEntryContent] 3 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-09-22 18:26:14.845][self$createEntryFromContent] Creating ChEBI entries from 3 content(s).
biodb.DEBUG[2025-09-22 18:26:14.846][self$createEntryFromContent] Parsing 3 ChEBI entries.
biodb.DEBUG[2025-09-22 18:26:14.846][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-22 18:26:14.846][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-22 18:26:14.847][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-22 18:26:14.848][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-22 18:26:14.849][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-22 18:26:14.849][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-22 18:26:14.849][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-22 18:26:14.850][ef$get] Asked field names are: accession.
biodb.TRACE[2025-09-22 18:26:14.850][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-22 18:26:14.850][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:14.851][ef$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:14.851][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-22 18:26:14.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-22 18:26:14.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:14.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:14.852][ef$get] Asked field names are: charge.
biodb.TRACE[2025-09-22 18:26:14.852][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-09-22 18:26:14.853][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:14.853][ef$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:14.853][ef$get] Asked field names are: formula.
biodb.TRACE[2025-09-22 18:26:14.853][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-22 18:26:14.854][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:14.854][ef$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:14.854][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-09-22 18:26:14.855][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-22 18:26:14.855][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:14.855][ef$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:14.855][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-22 18:26:14.856][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-22 18:26:14.856][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:14.856][ef$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:14.857][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-09-22 18:26:14.857][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-09-22 18:26:14.857][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:14.857][ef$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:14.858][ef$get] Asked field names are: mass.
biodb.TRACE[2025-09-22 18:26:14.858][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:14.858][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:14.858][ef$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:14.859][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:14.859][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:14.859][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:14.859][ef$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:14.860][ef$get] Asked field names are: name.
biodb.TRACE[2025-09-22 18:26:14.860][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-09-22 18:26:14.860][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:14.861][ef$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:14.861][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-09-22 18:26:14.861][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-09-22 18:26:14.861][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:14.862][ef$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:14.862][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-09-22 18:26:14.862][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-22 18:26:14.863][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:14.863][ef$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:14.863][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-22 18:26:14.863][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-22 18:26:14.864][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:14.864][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:14.864][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-22 18:26:14.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-22 18:26:14.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:14.865][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:14.865][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-22 18:26:14.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-22 18:26:14.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:14.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:14.866][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-22 18:26:14.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-22 18:26:14.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:14.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:14.867][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-22 18:26:14.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-22 18:26:14.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:14.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:14.869][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-22 18:26:14.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-22 18:26:14.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:14.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:14.870][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-22 18:26:14.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-22 18:26:14.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:14.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-22 18:26:14.871][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-22 18:26:14.871][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-22 18:26:14.872][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-22 18:26:14.873][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-22 18:26:14.874][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-22 18:26:14.874][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-22 18:26:14.874][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-22 18:26:14.875][ef$get] Asked field names are: accession.
biodb.TRACE[2025-09-22 18:26:14.876][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-22 18:26:14.876][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:14.876][ef$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:14.876][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-22 18:26:14.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-22 18:26:14.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:14.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:14.878][ef$get] Asked field names are: charge.
biodb.TRACE[2025-09-22 18:26:14.878][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-09-22 18:26:14.878][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:14.878][ef$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:14.879][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-09-22 18:26:14.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-09-22 18:26:14.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:14.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:14.880][ef$get] Asked field names are: formula.
biodb.TRACE[2025-09-22 18:26:14.880][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-22 18:26:14.880][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:14.881][ef$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:14.881][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-09-22 18:26:14.881][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-22 18:26:14.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:14.882][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:14.882][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-09-22 18:26:14.882][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-22 18:26:14.883][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:14.883][ef$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:14.883][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-09-22 18:26:14.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-22 18:26:14.884][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:14.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:14.884][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-22 18:26:14.885][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-22 18:26:14.885][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:14.885][ef$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:14.886][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-22 18:26:14.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-22 18:26:14.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:14.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:14.887][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-09-22 18:26:14.887][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-09-22 18:26:14.887][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:14.887][ef$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:14.888][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-09-22 18:26:14.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-09-22 18:26:14.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:14.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:14.889][ef$get] Asked field names are: mass.
biodb.TRACE[2025-09-22 18:26:14.889][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:14.889][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:14.890][ef$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:14.890][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-09-22 18:26:14.890][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:14.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:14.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:14.891][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:14.891][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:14.891][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:14.892][ef$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:14.892][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:14.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:14.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:14.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:14.893][ef$get] Asked field names are: name.
biodb.TRACE[2025-09-22 18:26:14.893][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-09-22 18:26:14.894][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:14.894][ef$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:14.894][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-22 18:26:14.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-22 18:26:14.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:14.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:14.895][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-09-22 18:26:14.896][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-09-22 18:26:14.896][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:14.896][ef$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:14.897][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-09-22 18:26:14.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-09-22 18:26:14.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:14.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:14.898][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-09-22 18:26:14.898][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-22 18:26:14.898][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:14.899][ef$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:14.899][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-09-22 18:26:14.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-22 18:26:14.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:14.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:14.900][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-22 18:26:14.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-22 18:26:14.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:14.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:14.901][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-22 18:26:14.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-22 18:26:14.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:14.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:14.902][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-22 18:26:14.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-22 18:26:14.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:14.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:14.903][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-22 18:26:14.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-22 18:26:14.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:14.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:14.904][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-22 18:26:14.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-22 18:26:14.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:14.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:14.905][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-22 18:26:14.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-22 18:26:14.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:14.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:14.909][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-22 18:26:14.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-22 18:26:14.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:14.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-22 18:26:14.910][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-22 18:26:14.910][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-22 18:26:14.910][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-22 18:26:14.913][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-22 18:26:14.913][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-22 18:26:14.913][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-22 18:26:14.913][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-22 18:26:14.914][ef$get] Asked field names are: accession.
biodb.TRACE[2025-09-22 18:26:14.914][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-22 18:26:14.915][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:14.915][ef$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:14.915][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-22 18:26:14.916][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-22 18:26:14.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:14.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:14.917][ef$get] Asked field names are: charge.
biodb.TRACE[2025-09-22 18:26:14.917][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-09-22 18:26:14.917][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:14.917][ef$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:14.918][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-09-22 18:26:14.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-09-22 18:26:14.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:14.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:14.919][ef$get] Asked field names are: formula.
biodb.TRACE[2025-09-22 18:26:14.919][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-22 18:26:14.920][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:14.920][ef$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:14.920][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-09-22 18:26:14.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-22 18:26:14.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:14.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:14.921][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-09-22 18:26:14.922][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-22 18:26:14.922][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:14.922][ef$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:14.923][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-09-22 18:26:14.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-22 18:26:14.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:14.923][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:14.924][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-22 18:26:14.924][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-22 18:26:14.924][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:14.924][ef$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:14.925][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-22 18:26:14.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-22 18:26:14.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:14.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:14.926][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-09-22 18:26:14.926][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-09-22 18:26:14.926][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:14.927][ef$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:14.927][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-09-22 18:26:14.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-09-22 18:26:14.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:14.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:14.928][ef$get] Asked field names are: mass.
biodb.TRACE[2025-09-22 18:26:14.928][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:14.929][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:14.929][ef$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:14.929][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-09-22 18:26:14.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:14.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:14.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:14.930][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:14.931][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:14.931][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:14.931][ef$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:14.932][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:14.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:14.932][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:14.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:14.933][ef$get] Asked field names are: name.
biodb.TRACE[2025-09-22 18:26:14.933][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-09-22 18:26:14.933][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:14.933][ef$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:14.934][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-22 18:26:14.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-22 18:26:14.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:14.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:14.935][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-09-22 18:26:14.935][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-09-22 18:26:14.935][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:14.936][ef$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:14.936][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-09-22 18:26:14.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-09-22 18:26:14.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:14.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:14.937][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-09-22 18:26:14.937][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-22 18:26:14.938][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:14.938][ef$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:14.938][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-09-22 18:26:14.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-22 18:26:14.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:14.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:14.939][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-22 18:26:14.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-22 18:26:14.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:14.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:14.940][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-22 18:26:14.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-22 18:26:14.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:14.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:14.941][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-22 18:26:14.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-22 18:26:14.942][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:14.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:14.943][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-22 18:26:14.943][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-22 18:26:14.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:14.943][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:14.944][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-22 18:26:14.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-22 18:26:14.944][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:14.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:14.945][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-22 18:26:14.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-22 18:26:14.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:14.945][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:14.946][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-22 18:26:14.946][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-22 18:26:14.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:14.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:14.947][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-22 18:26:14.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-22 18:26:14.947][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:14.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:14.948][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-22 18:26:14.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-22 18:26:14.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:14.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:14.949][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-22 18:26:14.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-22 18:26:14.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:14.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:14.950][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-22 18:26:14.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-22 18:26:14.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:14.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:14.951][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-22 18:26:14.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-22 18:26:14.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:14.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:14.952][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-22 18:26:14.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-22 18:26:14.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:14.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:14.953][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-22 18:26:14.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-22 18:26:14.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:14.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:14.954][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-22 18:26:14.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-22 18:26:14.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:14.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:14.955][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-22 18:26:14.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-22 18:26:14.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:14.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-22 18:26:14.957][self$createEntryFromContent] Accession numbers: , 2528, 7799.
biodb.DEBUG[2025-09-22 18:26:14.957][self$createEntryFromContent] Found 1 entry/ies without an accession number. Set it/them to NULL.
biodb.DEBUG[2025-09-22 18:26:14.957][function(conn, opt)] Entries: [4]: "NULL, <environment>, <environment>, <environment>"
biodb.INFO [2025-09-22 18:26:14.962][biodb::testThat]
biodb.INFO [2025-09-22 18:26:14.962][biodb::testThat] Running test function  test.peak.table  (" The peak table is correct. ").
biodb.INFO [2025-09-22 18:26:14.962][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-09-22 18:26:14.963][biodb::testThat]
biodb.INFO [2025-09-22 18:26:14.970][biodb::testThat]
biodb.INFO [2025-09-22 18:26:14.971][biodb::testThat] Running test function  test.nb.entries  (" Nb entries is positive. ").
biodb.INFO [2025-09-22 18:26:14.971][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-09-22 18:26:14.971][biodb::testThat]
biodb.INFO [2025-09-22 18:26:14.974][biodb::testThat]
biodb.INFO [2025-09-22 18:26:14.974][biodb::testThat] Running test function  test.entry.ids  (" We can get a list of entry ids. ").
biodb.INFO [2025-09-22 18:26:14.974][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-09-22 18:26:14.975][biodb::testThat]
sched.DEBUG[2025-09-22 18:26:14.975][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=1*&searchCategory=CHEBI ID&maximumResults=100&starsCategory=ALL".
fscache.INFO [2025-09-22 18:26:14.976][private$cache$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/sched.
fscache.DEBUG[2025-09-22 18:26:14.979][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/sched/02ece1564def26723013d564c4071584.content.
sched.DEBUG[2025-09-22 18:26:14.979][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.TRACE[2025-09-22 18:26:14.983][ef$get] Asked field names are: name.
biodb.TRACE[2025-09-22 18:26:14.983][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-09-22 18:26:14.983][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:14.984][ef$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:14.984][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:14.984][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:14.984][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:14.985][ef$get] fields variable is a list.
biodb.INFO [2025-09-22 18:26:14.985][biodb::testThat]
biodb.INFO [2025-09-22 18:26:14.985][biodb::testThat] Running test function  test.annotateMzValues  (" annotateMzValues() works correctly. ").
biodb.INFO [2025-09-22 18:26:14.986][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-09-22 18:26:14.986][biodb::testThat]
biodb.ERROR[2025-09-22 18:26:14.990][conn$annotateMzValues] No column named "mz" was found inside data frame.
biodb.ERROR[2025-09-22 18:26:14.995][ef$checkIsDefined] Field(s) "foo" is/are not defined.
biodb.INFO [2025-09-22 18:26:15.001][biodb$terminate] Closing BiodbMain instance...
biodb.INFO [2025-09-22 18:26:15.001][self$deleteConn] Connector "chebi" deleted.
biodb.DEBUG[2025-09-22 18:26:15.002][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2025-09-22 18:26:15.002][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-22 18:26:15.002][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-22 18:26:15.002][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-22 18:26:15.003][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-22 18:26:15.003][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2025-09-22 18:26:15.003][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2025-09-22 18:26:15.006][biodb::testContext]
biodb.INFO [2025-09-22 18:26:15.007][biodb::testContext] ********************************************************************************
biodb.INFO [2025-09-22 18:26:15.007][biodb::testContext] Test context - Test conversions
biodb.INFO [2025-09-22 18:26:15.007][biodb::testContext] ********************************************************************************
biodb.INFO [2025-09-22 18:26:15.008][biodb::testContext]
biodb.INFO [2025-09-22 18:26:15.008][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.17.1.
biodb.DEBUG[2025-09-22 18:26:15.009][self$loadDefinitions] Load definitions from file "/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/biodb/definitions.yml".
biodb.DEBUG[2025-09-22 18:26:15.010][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-09-22 18:26:15.011][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2025-09-22 18:26:15.011][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2025-09-22 18:26:15.011][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-22 18:26:15.012][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-22 18:26:15.012][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-22 18:26:15.012][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2025-09-22 18:26:15.012][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2025-09-22 18:26:15.013][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-22 18:26:15.013][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-22 18:26:15.013][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-22 18:26:15.013][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2025-09-22 18:26:15.014][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2025-09-22 18:26:15.014][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-22 18:26:15.014][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-22 18:26:15.014][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-22 18:26:15.015][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2025-09-22 18:26:15.015][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2025-09-22 18:26:15.015][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2025-09-22 18:26:15.015][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-22 18:26:15.016][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-22 18:26:15.016][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-22 18:26:15.016][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2025-09-22 18:26:15.016][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2025-09-22 18:26:15.017][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2025-09-22 18:26:15.017][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-22 18:26:15.017][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-22 18:26:15.017][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-22 18:26:15.017][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2025-09-22 18:26:15.018][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2025-09-22 18:26:15.018][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-22 18:26:15.018][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-22 18:26:15.018][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-22 18:26:15.019][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2025-09-22 18:26:15.019][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2025-09-22 18:26:15.019][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2025-09-22 18:26:15.019][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-22 18:26:15.020][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-22 18:26:15.020][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-22 18:26:15.020][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2025-09-22 18:26:15.020][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2025-09-22 18:26:15.021][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-22 18:26:15.021][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-22 18:26:15.021][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-22 18:26:15.021][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2025-09-22 18:26:15.022][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2025-09-22 18:26:15.022][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2025-09-22 18:26:15.022][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-22 18:26:15.022][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-22 18:26:15.022][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-22 18:26:15.023][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2025-09-22 18:26:15.023][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2025-09-22 18:26:15.023][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2025-09-22 18:26:15.023][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2025-09-22 18:26:15.024][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2025-09-22 18:26:15.024][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2025-09-22 18:26:15.024][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-22 18:26:15.024][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-22 18:26:15.025][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-22 18:26:15.025][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2025-09-22 18:26:15.025][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2025-09-22 18:26:15.025][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-22 18:26:15.026][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-22 18:26:15.026][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-22 18:26:15.026][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2025-09-22 18:26:15.026][self$set] Set key entries.sep to "|".
biodb.DEBUG[2025-09-22 18:26:15.027][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-22 18:26:15.027][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-22 18:26:15.027][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-22 18:26:15.027][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2025-09-22 18:26:15.028][self$set] Set key offline to FALSE.
biodb.DEBUG[2025-09-22 18:26:15.028][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-22 18:26:15.028][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-22 18:26:15.028][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-22 18:26:15.028][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2025-09-22 18:26:15.029][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2025-09-22 18:26:15.029][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2025-09-22 18:26:15.029][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-22 18:26:15.029][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-22 18:26:15.030][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-22 18:26:15.030][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2025-09-22 18:26:15.030][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2025-09-22 18:26:15.040][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2025-09-22 18:26:15.040][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-22 18:26:15.040][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-22 18:26:15.041][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-22 18:26:15.041][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2025-09-22 18:26:15.041][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2025-09-22 18:26:15.042][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2025-09-22 18:26:15.042][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-22 18:26:15.042][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-22 18:26:15.042][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-22 18:26:15.043][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2025-09-22 18:26:15.043][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-09-22 18:26:15.044][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2025-09-22 18:26:15.044][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-09-22 18:26:15.044][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-09-22 18:26:15.044][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-09-22 18:26:15.045][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-09-22 18:26:15.045][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-09-22 18:26:15.045][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-09-22 18:26:15.046][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2025-09-22 18:26:15.046][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-09-22 18:26:15.046][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-09-22 18:26:15.046][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2025-09-22 18:26:15.047][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-09-22 18:26:15.047][self$setPropertyValue] Setting property "parsing.expr" to "<NULL>".
biodb.DEBUG[2025-09-22 18:26:15.047][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-09-22 18:26:15.047][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-09-22 18:26:15.047][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-09-22 18:26:15.047][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-09-22 18:26:15.047][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2025-09-22 18:26:15.047][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2025-09-22 18:26:15.048][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-09-22 18:26:15.048][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-09-22 18:26:15.048][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-09-22 18:26:15.049][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-09-22 18:26:15.049][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-09-22 18:26:15.049][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-09-22 18:26:15.049][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-09-22 18:26:15.050][self$setPropertyValue] Setting property "urls" to "<NULL>".
biodb.DEBUG[2025-09-22 18:26:15.050][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-09-22 18:26:15.050][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-09-22 18:26:15.050][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-09-22 18:26:15.051][self$setPropertyValue] Setting property "xml.ns" to "<NULL>".
biodb.DEBUG[2025-09-22 18:26:15.051][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2025-09-22 18:26:15.051][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-09-22 18:26:15.052][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2025-09-22 18:26:15.052][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-09-22 18:26:15.052][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-09-22 18:26:15.053][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-09-22 18:26:15.053][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-09-22 18:26:15.053][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-09-22 18:26:15.053][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-09-22 18:26:15.054][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2025-09-22 18:26:15.054][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-09-22 18:26:15.054][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-09-22 18:26:15.054][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2025-09-22 18:26:15.055][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-09-22 18:26:15.055][self$setPropertyValue] Setting property "parsing.expr" to "<NULL>".
biodb.DEBUG[2025-09-22 18:26:15.055][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-09-22 18:26:15.055][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-09-22 18:26:15.055][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-09-22 18:26:15.055][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-09-22 18:26:15.055][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2025-09-22 18:26:15.055][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2025-09-22 18:26:15.056][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-09-22 18:26:15.056][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-09-22 18:26:15.056][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-09-22 18:26:15.056][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-09-22 18:26:15.057][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-09-22 18:26:15.057][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-09-22 18:26:15.057][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-09-22 18:26:15.057][self$setPropertyValue] Setting property "urls" to "<NULL>".
biodb.DEBUG[2025-09-22 18:26:15.058][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-09-22 18:26:15.058][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-09-22 18:26:15.058][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-09-22 18:26:15.058][self$setPropertyValue] Setting property "xml.ns" to "<NULL>".
biodb.DEBUG[2025-09-22 18:26:15.059][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2025-09-22 18:26:15.059][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-09-22 18:26:15.060][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2025-09-22 18:26:15.060][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-09-22 18:26:15.060][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-09-22 18:26:15.060][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-09-22 18:26:15.061][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-09-22 18:26:15.061][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-09-22 18:26:15.061][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-09-22 18:26:15.061][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2025-09-22 18:26:15.062][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-09-22 18:26:15.062][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2025-09-22 18:26:15.062][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2025-09-22 18:26:15.062][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-09-22 18:26:15.063][self$setPropertyValue] Setting property "parsing.expr" to "<NULL>".
biodb.DEBUG[2025-09-22 18:26:15.063][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-09-22 18:26:15.063][self$setPropertyValue] Setting property "searchable.fields" to "<NULL>".
biodb.DEBUG[2025-09-22 18:26:15.063][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-09-22 18:26:15.064][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-09-22 18:26:15.064][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-09-22 18:26:15.064][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-09-22 18:26:15.064][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-09-22 18:26:15.065][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-09-22 18:26:15.065][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-09-22 18:26:15.065][self$setPropertyValue] Setting property "urls" to "<NULL>".
biodb.DEBUG[2025-09-22 18:26:15.065][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-09-22 18:26:15.066][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-09-22 18:26:15.066][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-09-22 18:26:15.066][self$setPropertyValue] Setting property "xml.ns" to "<NULL>".
biodb.DEBUG[2025-09-22 18:26:15.067][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2025-09-22 18:26:15.067][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-09-22 18:26:15.067][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2025-09-22 18:26:15.068][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-09-22 18:26:15.068][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-09-22 18:26:15.068][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-09-22 18:26:15.068][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-09-22 18:26:15.069][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-09-22 18:26:15.069][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-09-22 18:26:15.069][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2025-09-22 18:26:15.069][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-09-22 18:26:15.070][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2025-09-22 18:26:15.070][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2025-09-22 18:26:15.070][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-09-22 18:26:15.070][self$setPropertyValue] Setting property "parsing.expr" to "<NULL>".
biodb.DEBUG[2025-09-22 18:26:15.071][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-09-22 18:26:15.071][self$setPropertyValue] Setting property "searchable.fields" to "<NULL>".
biodb.DEBUG[2025-09-22 18:26:15.071][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-09-22 18:26:15.071][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-09-22 18:26:15.072][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-09-22 18:26:15.072][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-09-22 18:26:15.072][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-09-22 18:26:15.072][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-09-22 18:26:15.073][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-09-22 18:26:15.073][self$setPropertyValue] Setting property "urls" to "<NULL>".
biodb.DEBUG[2025-09-22 18:26:15.073][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-09-22 18:26:15.073][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-09-22 18:26:15.074][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-09-22 18:26:15.074][self$setPropertyValue] Setting property "xml.ns" to "<NULL>".
biodb.DEBUG[2025-09-22 18:26:15.074][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-09-22 18:26:15.075][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2025-09-22 18:26:15.075][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-22 18:26:15.075][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-22 18:26:15.075][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-22 18:26:15.075][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-22 18:26:15.076][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-22 18:26:15.076][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-22 18:26:15.076][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-22 18:26:15.076][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-22 18:26:15.077][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-22 18:26:15.077][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-22 18:26:15.077][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-22 18:26:15.077][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-22 18:26:15.078][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-22 18:26:15.078][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-22 18:26:15.078][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-22 18:26:15.078][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-22 18:26:15.078][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-22 18:26:15.079][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-22 18:26:15.079][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-22 18:26:15.079][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-22 18:26:15.079][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-22 18:26:15.080][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-22 18:26:15.080][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-22 18:26:15.080][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-22 18:26:15.080][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-22 18:26:15.081][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-22 18:26:15.081][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-22 18:26:15.081][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-22 18:26:15.081][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-22 18:26:15.082][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-22 18:26:15.082][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-22 18:26:15.082][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-22 18:26:15.082][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-22 18:26:15.083][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-22 18:26:15.083][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-22 18:26:15.083][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-22 18:26:15.083][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-22 18:26:15.083][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-22 18:26:15.084][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-22 18:26:15.084][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-22 18:26:15.084][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-22 18:26:15.084][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-22 18:26:15.085][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-22 18:26:15.085][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-22 18:26:15.085][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-22 18:26:15.085][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-22 18:26:15.086][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-22 18:26:15.086][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-22 18:26:15.086][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-22 18:26:15.086][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-22 18:26:15.086][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-22 18:26:15.087][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-22 18:26:15.087][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-22 18:26:15.087][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-22 18:26:15.087][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-22 18:26:15.088][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-22 18:26:15.088][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-22 18:26:15.088][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-22 18:26:15.088][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-22 18:26:15.089][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-22 18:26:15.089][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-22 18:26:15.089][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-22 18:26:15.089][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-22 18:26:15.092][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-22 18:26:15.092][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-22 18:26:15.092][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-22 18:26:15.093][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-22 18:26:15.093][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-22 18:26:15.093][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-22 18:26:15.093][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-22 18:26:15.094][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-22 18:26:15.094][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-22 18:26:15.094][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-22 18:26:15.094][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-22 18:26:15.095][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-22 18:26:15.095][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-22 18:26:15.095][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-22 18:26:15.095][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-22 18:26:15.096][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-22 18:26:15.096][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-22 18:26:15.096][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-22 18:26:15.096][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2025-09-22 18:26:15.097][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2025-09-22 18:26:15.097][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2025-09-22 18:26:15.097][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2025-09-22 18:26:15.098][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2025-09-22 18:26:15.098][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2025-09-22 18:26:15.099][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2025-09-22 18:26:15.099][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2025-09-22 18:26:15.099][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2025-09-22 18:26:15.100][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2025-09-22 18:26:15.100][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2025-09-22 18:26:15.100][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2025-09-22 18:26:15.101][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2025-09-22 18:26:15.101][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2025-09-22 18:26:15.102][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2025-09-22 18:26:15.102][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2025-09-22 18:26:15.102][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2025-09-22 18:26:15.103][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2025-09-22 18:26:15.103][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2025-09-22 18:26:15.103][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2025-09-22 18:26:15.104][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2025-09-22 18:26:15.104][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2025-09-22 18:26:15.105][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2025-09-22 18:26:15.105][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2025-09-22 18:26:15.105][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2025-09-22 18:26:15.106][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2025-09-22 18:26:15.106][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2025-09-22 18:26:15.106][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2025-09-22 18:26:15.107][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2025-09-22 18:26:15.107][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2025-09-22 18:26:15.107][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2025-09-22 18:26:15.108][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2025-09-22 18:26:15.108][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2025-09-22 18:26:15.109][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2025-09-22 18:26:15.109][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2025-09-22 18:26:15.109][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2025-09-22 18:26:15.110][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2025-09-22 18:26:15.110][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2025-09-22 18:26:15.110][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2025-09-22 18:26:15.111][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2025-09-22 18:26:15.111][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2025-09-22 18:26:15.111][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2025-09-22 18:26:15.112][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2025-09-22 18:26:15.112][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2025-09-22 18:26:15.113][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2025-09-22 18:26:15.113][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2025-09-22 18:26:15.113][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2025-09-22 18:26:15.114][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2025-09-22 18:26:15.114][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2025-09-22 18:26:15.114][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2025-09-22 18:26:15.115][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2025-09-22 18:26:15.115][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2025-09-22 18:26:15.115][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2025-09-22 18:26:15.116][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2025-09-22 18:26:15.116][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2025-09-22 18:26:15.117][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2025-09-22 18:26:15.117][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2025-09-22 18:26:15.117][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2025-09-22 18:26:15.118][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2025-09-22 18:26:15.118][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2025-09-22 18:26:15.118][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2025-09-22 18:26:15.119][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2025-09-22 18:26:15.119][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2025-09-22 18:26:15.120][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2025-09-22 18:26:15.120][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2025-09-22 18:26:15.120][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2025-09-22 18:26:15.121][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2025-09-22 18:26:15.121][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2025-09-22 18:26:15.121][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2025-09-22 18:26:15.122][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2025-09-22 18:26:15.122][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2025-09-22 18:26:15.122][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2025-09-22 18:26:15.123][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2025-09-22 18:26:15.123][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2025-09-22 18:26:15.124][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2025-09-22 18:26:15.124][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2025-09-22 18:26:15.124][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2025-09-22 18:26:15.125][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2025-09-22 18:26:15.125][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2025-09-22 18:26:15.125][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2025-09-22 18:26:15.126][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2025-09-22 18:26:15.126][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2025-09-22 18:26:15.127][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2025-09-22 18:26:15.127][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2025-09-22 18:26:15.127][initialize] This is biodb version 1.17.1.
biodb.DEBUG[2025-09-22 18:26:15.128][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-09-22 18:26:15.128][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2025-09-22 18:26:15.128][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-22 18:26:15.129][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2025-09-22 18:26:15.129][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-22 18:26:15.129][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-22 18:26:15.129][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-22 18:26:15.129][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-22 18:26:15.130][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-22 18:26:15.130][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-22 18:26:15.130][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-22 18:26:15.130][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-22 18:26:15.131][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-22 18:26:15.131][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-22 18:26:15.131][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-22 18:26:15.131][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-22 18:26:15.131][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-22 18:26:15.132][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-22 18:26:15.132][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-22 18:26:15.132][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-22 18:26:15.132][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-22 18:26:15.133][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-22 18:26:15.133][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-22 18:26:15.133][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-22 18:26:15.133][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-22 18:26:15.134][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-22 18:26:15.134][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-22 18:26:15.134][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-22 18:26:15.134][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-22 18:26:15.134][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-22 18:26:15.135][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-22 18:26:15.135][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-22 18:26:15.135][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-22 18:26:15.135][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-22 18:26:15.136][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-22 18:26:15.136][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-22 18:26:15.136][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-22 18:26:15.136][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-22 18:26:15.136][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-22 18:26:15.137][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-22 18:26:15.137][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-22 18:26:15.137][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-22 18:26:15.137][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-22 18:26:15.138][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-22 18:26:15.138][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-22 18:26:15.138][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-22 18:26:15.138][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-22 18:26:15.139][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-22 18:26:15.139][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-22 18:26:15.139][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-22 18:26:15.139][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-22 18:26:15.139][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-22 18:26:15.140][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-22 18:26:15.140][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-22 18:26:15.140][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-22 18:26:15.140][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-22 18:26:15.141][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-22 18:26:15.141][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-22 18:26:15.141][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-22 18:26:15.141][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-22 18:26:15.141][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-22 18:26:15.142][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-22 18:26:15.142][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-22 18:26:15.142][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-22 18:26:15.142][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-22 18:26:15.143][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-22 18:26:15.143][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-22 18:26:15.143][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-22 18:26:15.143][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-22 18:26:15.143][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-22 18:26:15.144][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-22 18:26:15.144][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-22 18:26:15.144][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-22 18:26:15.144][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-22 18:26:15.145][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-22 18:26:15.145][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-22 18:26:15.145][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-22 18:26:15.145][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-22 18:26:15.146][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-22 18:26:15.146][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-22 18:26:15.146][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-22 18:26:15.146][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-22 18:26:15.146][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-22 18:26:15.147][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-22 18:26:15.147][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-22 18:26:15.147][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-22 18:26:15.147][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-22 18:26:15.148][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-22 18:26:15.148][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-22 18:26:15.148][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-22 18:26:15.148][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-22 18:26:15.149][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-22 18:26:15.149][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-22 18:26:15.149][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-22 18:26:15.149][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-22 18:26:15.149][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-22 18:26:15.150][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-22 18:26:15.150][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-22 18:26:15.150][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-22 18:26:15.150][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-22 18:26:15.151][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-22 18:26:15.151][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-22 18:26:15.151][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-22 18:26:15.151][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-22 18:26:15.152][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-22 18:26:15.152][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-22 18:26:15.152][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-22 18:26:15.152][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-22 18:26:15.152][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-22 18:26:15.153][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-22 18:26:15.153][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-22 18:26:15.153][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-22 18:26:15.153][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-22 18:26:15.154][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-22 18:26:15.154][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-22 18:26:15.154][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-22 18:26:15.154][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-22 18:26:15.155][biodb$loadDefinitions] Load definitions from file "/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/biodbChebi/definitions.yml".
biodb.DEBUG[2025-09-22 18:26:15.158][self$getDbsInfo()$define] Define connector chebi.
biodb.DEBUG[2025-09-22 18:26:15.167][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-09-22 18:26:15.170][self$setPropertyValue] Setting property "description" to "NA".
biodb.DEBUG[2025-09-22 18:26:15.170][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-09-22 18:26:15.170][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-09-22 18:26:15.170][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-09-22 18:26:15.171][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-09-22 18:26:15.171][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2025-09-22 18:26:15.171][self$setPropertyValue] Setting property "entry.content.encoding" to "UTF-8".
biodb.DEBUG[2025-09-22 18:26:15.171][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2025-09-22 18:26:15.172][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-09-22 18:26:15.172][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-09-22 18:26:15.172][self$setPropertyValue] Setting property "name" to "ChEBI".
biodb.DEBUG[2025-09-22 18:26:15.172][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-09-22 18:26:15.173][self$setPropertyValue] Setting property "parsing.expr" to "substring-after(//chebi:return/chebi:chebiId,'CHEBI:')".
biodb.DEBUG[2025-09-22 18:26:15.173][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:charge".
biodb.DEBUG[2025-09-22 18:26:15.173][self$setPropertyValue] Setting property "parsing.expr" to "c("//chebi:Formulae/chebi:source[text()='ChEBI']/../chebi:data", "(//chebi:Formulae/chebi:data)[1]")".
biodb.DEBUG[2025-09-22 18:26:15.173][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:inchi".
biodb.DEBUG[2025-09-22 18:26:15.173][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:inchiKey".
biodb.DEBUG[2025-09-22 18:26:15.173][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:DatabaseLinks/chebi:type[text()='KEGG COMPOUND accession']/../chebi:data".
biodb.DEBUG[2025-09-22 18:26:15.173][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:mass".
biodb.DEBUG[2025-09-22 18:26:15.173][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:monoisotopicMass".
biodb.DEBUG[2025-09-22 18:26:15.173][self$setPropertyValue] Setting property "parsing.expr" to "c("//chebi:chebiAsciiName", "//chebi:Synonyms/chebi:data")".
biodb.DEBUG[2025-09-22 18:26:15.173][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:entityStar".
biodb.DEBUG[2025-09-22 18:26:15.173][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:smiles".
biodb.DEBUG[2025-09-22 18:26:15.173][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2025-09-22 18:26:15.173][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-09-22 18:26:15.173][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-09-22 18:26:15.173][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-09-22 18:26:15.174][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2025-09-22 18:26:15.174][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-09-22 18:26:15.174][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-09-22 18:26:15.174][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-09-22 18:26:15.175][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-09-22 18:26:15.175][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-09-22 18:26:15.175][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-09-22 18:26:15.175][self$setPropertyValue] Setting property "urls" to "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-09-22 18:26:15.175][self$setPropertyValue] Setting property "urls" to "https://www.ebi.ac.uk/webservices/chebi/2.0/".
biodb.DEBUG[2025-09-22 18:26:15.176][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-09-22 18:26:15.176][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-09-22 18:26:15.176][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2025-09-22 18:26:15.176][self$setPropertyValue] Setting property "xml.ns" to "https://www.ebi.ac.uk/webservices/chebi".
biodb.DEBUG[2025-09-22 18:26:15.176][self$setPropertyValue] Setting property "xml.ns" to "http://www.w3.org/2001/XMLSchema".
biodb.DEBUG[2025-09-22 18:26:15.177][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2025-09-22 18:26:15.177][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2025-09-22 18:26:15.178][self$getEntryFields()$define] Define field n_stars.
biodb.DEBUG[2025-09-22 18:26:15.178][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2025-09-22 18:26:15.178][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2025-09-22 18:26:15.179][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2025-09-22 18:26:15.180][super$initialize] Initialize connector chebi.
biodb.DEBUG[2025-09-22 18:26:15.182][biodb$getFactory()$createConn] Creating new connector chebi for database class chebi .
biodb.INFO [2025-09-22 18:26:15.182][biodb::testThat]
biodb.INFO [2025-09-22 18:26:15.182][biodb::testThat] Running test function  test_chebi_convCasToChebi  (" convCasToChebi() works. ").
biodb.INFO [2025-09-22 18:26:15.183][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-09-22 18:26:15.183][biodb::testThat]
sched.DEBUG[2025-09-22 18:26:15.184][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/webservice?wsdl".
fscache.INFO [2025-09-22 18:26:15.184][private$cache$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/sched.
fscache.DEBUG[2025-09-22 18:26:15.186][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/sched/a2ed8f44d213d85be0d7e9a0448c78ad.content.
sched.DEBUG[2025-09-22 18:26:15.187][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
sched.DEBUG[2025-09-22 18:26:15.188][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=51-41-2&searchCategory=REGISTRY NUMBERS&maximumResults=10&starsCategory=ALL".
fscache.INFO [2025-09-22 18:26:15.189][private$cache$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/sched.
fscache.DEBUG[2025-09-22 18:26:15.189][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/sched/a18c63ccef4470d3f0d2883a74f87ee1.content.
sched.DEBUG[2025-09-22 18:26:15.190][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-09-22 18:26:15.190][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-22 18:26:15.191][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-22 18:26:15.191][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-22 18:26:15.193][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-22 18:26:15.193][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-22 18:26:15.193][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-22 18:26:15.194][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-09-22 18:26:15.194][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=87605-72-9&searchCategory=REGISTRY NUMBERS&maximumResults=10&starsCategory=ALL".
fscache.INFO [2025-09-22 18:26:15.195][private$cache$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/sched.
fscache.DEBUG[2025-09-22 18:26:15.196][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/sched/b6b884df7b7bd565d1ac86525427e09b.content.
sched.DEBUG[2025-09-22 18:26:15.196][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-09-22 18:26:15.197][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-22 18:26:15.197][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-22 18:26:15.197][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-22 18:26:15.199][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-22 18:26:15.199][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-22 18:26:15.199][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-22 18:26:15.200][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-22 18:26:15.205][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-22 18:26:15.205][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-22 18:26:15.205][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-22 18:26:15.207][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-22 18:26:15.207][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-22 18:26:15.207][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-22 18:26:15.207][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-09-22 18:26:15.209][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=51-41-2&searchCategory=REGISTRY NUMBERS&maximumResults=10&starsCategory=ALL".
fscache.INFO [2025-09-22 18:26:15.210][private$cache$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/sched.
fscache.DEBUG[2025-09-22 18:26:15.210][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/sched/a18c63ccef4470d3f0d2883a74f87ee1.content.
sched.DEBUG[2025-09-22 18:26:15.211][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-09-22 18:26:15.211][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-22 18:26:15.211][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-22 18:26:15.212][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-22 18:26:15.213][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-22 18:26:15.213][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-22 18:26:15.214][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-22 18:26:15.214][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-09-22 18:26:15.214][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=87605-72-9&searchCategory=REGISTRY NUMBERS&maximumResults=10&starsCategory=ALL".
fscache.INFO [2025-09-22 18:26:15.215][private$cache$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/sched.
fscache.DEBUG[2025-09-22 18:26:15.216][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/sched/b6b884df7b7bd565d1ac86525427e09b.content.
sched.DEBUG[2025-09-22 18:26:15.216][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-09-22 18:26:15.216][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-22 18:26:15.217][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-22 18:26:15.217][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-22 18:26:15.219][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-22 18:26:15.219][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-22 18:26:15.219][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-22 18:26:15.219][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-22 18:26:15.220][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-22 18:26:15.220][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-22 18:26:15.220][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-22 18:26:15.222][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-22 18:26:15.222][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-22 18:26:15.222][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-22 18:26:15.222][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-09-22 18:26:15.223][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=51-41-2&searchCategory=REGISTRY NUMBERS&maximumResults=10&starsCategory=ALL".
fscache.INFO [2025-09-22 18:26:15.224][private$cache$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/sched.
fscache.DEBUG[2025-09-22 18:26:15.225][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/sched/a18c63ccef4470d3f0d2883a74f87ee1.content.
sched.DEBUG[2025-09-22 18:26:15.225][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-09-22 18:26:15.226][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-22 18:26:15.226][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-22 18:26:15.226][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-22 18:26:15.228][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-22 18:26:15.228][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-22 18:26:15.228][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-22 18:26:15.228][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-09-22 18:26:15.229][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=87605-72-9&searchCategory=REGISTRY NUMBERS&maximumResults=10&starsCategory=ALL".
fscache.INFO [2025-09-22 18:26:15.230][private$cache$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/sched.
fscache.DEBUG[2025-09-22 18:26:15.230][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/sched/b6b884df7b7bd565d1ac86525427e09b.content.
sched.DEBUG[2025-09-22 18:26:15.231][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-09-22 18:26:15.231][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-22 18:26:15.231][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-22 18:26:15.232][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-22 18:26:15.233][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-22 18:26:15.233][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-22 18:26:15.234][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-22 18:26:15.234][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-09-22 18:26:15.234][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=14215-68-0&searchCategory=REGISTRY NUMBERS&maximumResults=10&starsCategory=ALL".
fscache.INFO [2025-09-22 18:26:15.235][private$cache$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/sched.
fscache.DEBUG[2025-09-22 18:26:15.236][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/sched/d853ab8a48594978d76c30b86726648a.content.
sched.DEBUG[2025-09-22 18:26:15.236][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-09-22 18:26:15.237][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-22 18:26:15.237][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-22 18:26:15.238][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-22 18:26:15.239][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-22 18:26:15.239][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-22 18:26:15.240][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-22 18:26:15.240][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2025-09-22 18:26:15.242][biodb::testThat]
biodb.INFO [2025-09-22 18:26:15.242][biodb::testThat] Running test function  test_chebi_convInchiToChebi  (" convInchiToChebi() works. ").
biodb.INFO [2025-09-22 18:26:15.243][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-09-22 18:26:15.243][biodb::testThat]
sched.DEBUG[2025-09-22 18:26:15.244][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=InChI=1S/C15H24/c1-9(2)11-7-8-15(4)12-6-5-10(3)14(15)13(11)12/h5,9,11-14H,6-8H2,1-4H3/t11?,12?,13?,14?,15-/m0/s1&searchCategory=INCHI/INCHI KEY&maximumResults=10&starsCategory=ALL".
fscache.INFO [2025-09-22 18:26:15.245][private$cache$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/sched.
fscache.DEBUG[2025-09-22 18:26:15.246][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/sched/aa56e28005d49da17591454624aabcd2.content.
sched.DEBUG[2025-09-22 18:26:15.246][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-09-22 18:26:15.246][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-22 18:26:15.247][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-22 18:26:15.247][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-22 18:26:15.248][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-22 18:26:15.249][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-22 18:26:15.249][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-22 18:26:15.252][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-09-22 18:26:15.253][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=VLXDPFLIRFYIME-MWHZVNNOSA-N&searchCategory=INCHI/INCHI KEY&maximumResults=10&starsCategory=ALL".
fscache.INFO [2025-09-22 18:26:15.254][private$cache$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/sched.
fscache.DEBUG[2025-09-22 18:26:15.255][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/sched/c62078a064e3122e21e26c3428179396.content.
sched.DEBUG[2025-09-22 18:26:15.255][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-09-22 18:26:15.255][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-22 18:26:15.256][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-22 18:26:15.256][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-22 18:26:15.257][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-22 18:26:15.258][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-22 18:26:15.258][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-22 18:26:15.258][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2025-09-22 18:26:15.260][biodb$terminate] Closing BiodbMain instance...
biodb.INFO [2025-09-22 18:26:15.260][self$deleteConn] Connector "chebi" deleted.
biodb.DEBUG[2025-09-22 18:26:15.260][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2025-09-22 18:26:15.261][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-22 18:26:15.261][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-22 18:26:15.261][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-22 18:26:15.261][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-22 18:26:15.262][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2025-09-22 18:26:15.262][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2025-09-22 18:26:15.263][biodb::testContext]
biodb.INFO [2025-09-22 18:26:15.263][biodb::testContext] ********************************************************************************
biodb.INFO [2025-09-22 18:26:15.264][biodb::testContext] Test context - Test web services
biodb.INFO [2025-09-22 18:26:15.264][biodb::testContext] ********************************************************************************
biodb.INFO [2025-09-22 18:26:15.264][biodb::testContext]
biodb.INFO [2025-09-22 18:26:15.265][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.17.1.
biodb.DEBUG[2025-09-22 18:26:15.265][self$loadDefinitions] Load definitions from file "/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/biodb/definitions.yml".
biodb.DEBUG[2025-09-22 18:26:15.267][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-09-22 18:26:15.267][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2025-09-22 18:26:15.267][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2025-09-22 18:26:15.268][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-22 18:26:15.268][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-22 18:26:15.268][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-22 18:26:15.268][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2025-09-22 18:26:15.269][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2025-09-22 18:26:15.269][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-22 18:26:15.269][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-22 18:26:15.269][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-22 18:26:15.270][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2025-09-22 18:26:15.270][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2025-09-22 18:26:15.270][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-22 18:26:15.270][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-22 18:26:15.271][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-22 18:26:15.271][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2025-09-22 18:26:15.271][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2025-09-22 18:26:15.271][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2025-09-22 18:26:15.272][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-22 18:26:15.272][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-22 18:26:15.272][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-22 18:26:15.272][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2025-09-22 18:26:15.273][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2025-09-22 18:26:15.273][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2025-09-22 18:26:15.273][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-22 18:26:15.273][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-22 18:26:15.274][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-22 18:26:15.274][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2025-09-22 18:26:15.274][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2025-09-22 18:26:15.275][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-22 18:26:15.275][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-22 18:26:15.275][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-22 18:26:15.275][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2025-09-22 18:26:15.275][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2025-09-22 18:26:15.276][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2025-09-22 18:26:15.276][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-22 18:26:15.276][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-22 18:26:15.276][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-22 18:26:15.277][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2025-09-22 18:26:15.277][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2025-09-22 18:26:15.277][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-22 18:26:15.278][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-22 18:26:15.278][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-22 18:26:15.278][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2025-09-22 18:26:15.278][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2025-09-22 18:26:15.279][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2025-09-22 18:26:15.279][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-22 18:26:15.279][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-22 18:26:15.279][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-22 18:26:15.279][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2025-09-22 18:26:15.280][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2025-09-22 18:26:15.280][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2025-09-22 18:26:15.280][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2025-09-22 18:26:15.281][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2025-09-22 18:26:15.281][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2025-09-22 18:26:15.281][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-22 18:26:15.281][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-22 18:26:15.282][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-22 18:26:15.282][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2025-09-22 18:26:15.282][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2025-09-22 18:26:15.282][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-22 18:26:15.283][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-22 18:26:15.283][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-22 18:26:15.283][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2025-09-22 18:26:15.283][self$set] Set key entries.sep to "|".
biodb.DEBUG[2025-09-22 18:26:15.283][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-22 18:26:15.284][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-22 18:26:15.284][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-22 18:26:15.284][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2025-09-22 18:26:15.284][self$set] Set key offline to FALSE.
biodb.DEBUG[2025-09-22 18:26:15.285][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-22 18:26:15.285][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-22 18:26:15.285][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-22 18:26:15.285][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2025-09-22 18:26:15.286][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2025-09-22 18:26:15.286][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2025-09-22 18:26:15.286][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-22 18:26:15.286][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-22 18:26:15.287][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-22 18:26:15.287][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2025-09-22 18:26:15.287][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2025-09-22 18:26:15.293][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2025-09-22 18:26:15.293][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-22 18:26:15.294][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-22 18:26:15.294][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-22 18:26:15.294][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2025-09-22 18:26:15.295][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2025-09-22 18:26:15.295][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2025-09-22 18:26:15.295][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-22 18:26:15.295][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-22 18:26:15.296][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-22 18:26:15.296][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2025-09-22 18:26:15.296][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-09-22 18:26:15.297][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2025-09-22 18:26:15.297][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-09-22 18:26:15.297][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-09-22 18:26:15.298][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-09-22 18:26:15.298][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-09-22 18:26:15.298][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-09-22 18:26:15.298][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-09-22 18:26:15.299][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2025-09-22 18:26:15.299][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-09-22 18:26:15.299][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-09-22 18:26:15.299][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2025-09-22 18:26:15.300][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-09-22 18:26:15.300][self$setPropertyValue] Setting property "parsing.expr" to "<NULL>".
biodb.DEBUG[2025-09-22 18:26:15.300][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-09-22 18:26:15.300][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-09-22 18:26:15.300][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-09-22 18:26:15.300][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-09-22 18:26:15.300][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2025-09-22 18:26:15.300][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2025-09-22 18:26:15.301][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-09-22 18:26:15.301][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-09-22 18:26:15.301][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-09-22 18:26:15.302][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-09-22 18:26:15.302][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-09-22 18:26:15.302][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-09-22 18:26:15.302][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-09-22 18:26:15.303][self$setPropertyValue] Setting property "urls" to "<NULL>".
biodb.DEBUG[2025-09-22 18:26:15.303][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-09-22 18:26:15.303][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-09-22 18:26:15.303][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-09-22 18:26:15.303][self$setPropertyValue] Setting property "xml.ns" to "<NULL>".
biodb.DEBUG[2025-09-22 18:26:15.304][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2025-09-22 18:26:15.304][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-09-22 18:26:15.305][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2025-09-22 18:26:15.305][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-09-22 18:26:15.305][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-09-22 18:26:15.305][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-09-22 18:26:15.306][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-09-22 18:26:15.306][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-09-22 18:26:15.306][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-09-22 18:26:15.306][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2025-09-22 18:26:15.307][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-09-22 18:26:15.307][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-09-22 18:26:15.307][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2025-09-22 18:26:15.308][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-09-22 18:26:15.308][self$setPropertyValue] Setting property "parsing.expr" to "<NULL>".
biodb.DEBUG[2025-09-22 18:26:15.308][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-09-22 18:26:15.309][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-09-22 18:26:15.309][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-09-22 18:26:15.309][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-09-22 18:26:15.309][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2025-09-22 18:26:15.309][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2025-09-22 18:26:15.309][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-09-22 18:26:15.309][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-09-22 18:26:15.309][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-09-22 18:26:15.310][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-09-22 18:26:15.310][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-09-22 18:26:15.310][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-09-22 18:26:15.310][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-09-22 18:26:15.311][self$setPropertyValue] Setting property "urls" to "<NULL>".
biodb.DEBUG[2025-09-22 18:26:15.311][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-09-22 18:26:15.312][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-09-22 18:26:15.312][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-09-22 18:26:15.312][self$setPropertyValue] Setting property "xml.ns" to "<NULL>".
biodb.DEBUG[2025-09-22 18:26:15.313][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2025-09-22 18:26:15.313][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-09-22 18:26:15.314][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2025-09-22 18:26:15.314][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-09-22 18:26:15.314][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-09-22 18:26:15.314][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-09-22 18:26:15.315][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-09-22 18:26:15.315][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-09-22 18:26:15.315][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-09-22 18:26:15.315][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2025-09-22 18:26:15.316][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-09-22 18:26:15.316][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2025-09-22 18:26:15.316][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2025-09-22 18:26:15.317][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-09-22 18:26:15.317][self$setPropertyValue] Setting property "parsing.expr" to "<NULL>".
biodb.DEBUG[2025-09-22 18:26:15.317][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-09-22 18:26:15.317][self$setPropertyValue] Setting property "searchable.fields" to "<NULL>".
biodb.DEBUG[2025-09-22 18:26:15.318][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-09-22 18:26:15.318][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-09-22 18:26:15.318][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-09-22 18:26:15.318][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-09-22 18:26:15.319][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-09-22 18:26:15.319][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-09-22 18:26:15.319][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-09-22 18:26:15.319][self$setPropertyValue] Setting property "urls" to "<NULL>".
biodb.DEBUG[2025-09-22 18:26:15.320][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-09-22 18:26:15.320][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-09-22 18:26:15.320][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-09-22 18:26:15.320][self$setPropertyValue] Setting property "xml.ns" to "<NULL>".
biodb.DEBUG[2025-09-22 18:26:15.321][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2025-09-22 18:26:15.321][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-09-22 18:26:15.322][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2025-09-22 18:26:15.322][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-09-22 18:26:15.322][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-09-22 18:26:15.322][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-09-22 18:26:15.323][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-09-22 18:26:15.323][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-09-22 18:26:15.323][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-09-22 18:26:15.323][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2025-09-22 18:26:15.324][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-09-22 18:26:15.324][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2025-09-22 18:26:15.324][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2025-09-22 18:26:15.324][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-09-22 18:26:15.325][self$setPropertyValue] Setting property "parsing.expr" to "<NULL>".
biodb.DEBUG[2025-09-22 18:26:15.325][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-09-22 18:26:15.325][self$setPropertyValue] Setting property "searchable.fields" to "<NULL>".
biodb.DEBUG[2025-09-22 18:26:15.325][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-09-22 18:26:15.326][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-09-22 18:26:15.326][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-09-22 18:26:15.326][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-09-22 18:26:15.326][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-09-22 18:26:15.327][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-09-22 18:26:15.327][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-09-22 18:26:15.327][self$setPropertyValue] Setting property "urls" to "<NULL>".
biodb.DEBUG[2025-09-22 18:26:15.327][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-09-22 18:26:15.328][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-09-22 18:26:15.328][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-09-22 18:26:15.328][self$setPropertyValue] Setting property "xml.ns" to "<NULL>".
biodb.DEBUG[2025-09-22 18:26:15.329][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-09-22 18:26:15.329][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2025-09-22 18:26:15.329][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-22 18:26:15.329][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-22 18:26:15.329][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-22 18:26:15.330][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-22 18:26:15.330][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-22 18:26:15.330][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-22 18:26:15.330][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-22 18:26:15.331][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-22 18:26:15.331][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-22 18:26:15.331][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-22 18:26:15.331][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-22 18:26:15.332][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-22 18:26:15.332][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-22 18:26:15.332][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-22 18:26:15.332][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-22 18:26:15.332][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-22 18:26:15.333][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-22 18:26:15.333][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-22 18:26:15.333][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-22 18:26:15.333][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-22 18:26:15.334][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-22 18:26:15.334][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-22 18:26:15.334][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-22 18:26:15.334][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-22 18:26:15.335][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-22 18:26:15.335][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-22 18:26:15.335][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-22 18:26:15.335][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-22 18:26:15.335][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-22 18:26:15.336][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-22 18:26:15.336][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-22 18:26:15.336][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-22 18:26:15.336][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-22 18:26:15.337][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-22 18:26:15.337][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-22 18:26:15.337][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-22 18:26:15.337][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-22 18:26:15.338][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-22 18:26:15.338][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-22 18:26:15.338][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-22 18:26:15.338][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-22 18:26:15.338][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-22 18:26:15.339][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-22 18:26:15.341][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-22 18:26:15.342][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-22 18:26:15.342][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-22 18:26:15.342][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-22 18:26:15.342][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-22 18:26:15.342][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-22 18:26:15.343][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-22 18:26:15.343][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-22 18:26:15.343][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-22 18:26:15.343][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-22 18:26:15.344][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-22 18:26:15.344][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-22 18:26:15.344][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-22 18:26:15.344][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-22 18:26:15.345][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-22 18:26:15.345][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-22 18:26:15.345][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-22 18:26:15.345][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-22 18:26:15.345][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-22 18:26:15.346][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-22 18:26:15.346][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-22 18:26:15.346][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-22 18:26:15.346][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-22 18:26:15.347][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-22 18:26:15.347][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-22 18:26:15.347][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-22 18:26:15.347][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-22 18:26:15.347][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-22 18:26:15.348][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-22 18:26:15.348][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-22 18:26:15.348][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-22 18:26:15.348][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-22 18:26:15.349][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-22 18:26:15.349][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-22 18:26:15.349][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-22 18:26:15.349][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-22 18:26:15.349][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-22 18:26:15.350][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-22 18:26:15.350][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2025-09-22 18:26:15.350][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2025-09-22 18:26:15.351][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2025-09-22 18:26:15.351][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2025-09-22 18:26:15.351][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2025-09-22 18:26:15.352][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2025-09-22 18:26:15.352][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2025-09-22 18:26:15.353][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2025-09-22 18:26:15.353][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2025-09-22 18:26:15.353][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2025-09-22 18:26:15.354][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2025-09-22 18:26:15.354][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2025-09-22 18:26:15.354][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2025-09-22 18:26:15.355][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2025-09-22 18:26:15.355][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2025-09-22 18:26:15.355][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2025-09-22 18:26:15.356][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2025-09-22 18:26:15.356][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2025-09-22 18:26:15.357][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2025-09-22 18:26:15.357][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2025-09-22 18:26:15.357][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2025-09-22 18:26:15.358][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2025-09-22 18:26:15.358][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2025-09-22 18:26:15.358][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2025-09-22 18:26:15.359][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2025-09-22 18:26:15.359][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2025-09-22 18:26:15.359][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2025-09-22 18:26:15.360][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2025-09-22 18:26:15.360][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2025-09-22 18:26:15.361][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2025-09-22 18:26:15.361][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2025-09-22 18:26:15.361][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2025-09-22 18:26:15.362][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2025-09-22 18:26:15.362][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2025-09-22 18:26:15.362][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2025-09-22 18:26:15.363][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2025-09-22 18:26:15.363][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2025-09-22 18:26:15.363][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2025-09-22 18:26:15.364][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2025-09-22 18:26:15.364][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2025-09-22 18:26:15.365][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2025-09-22 18:26:15.365][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2025-09-22 18:26:15.365][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2025-09-22 18:26:15.366][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2025-09-22 18:26:15.366][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2025-09-22 18:26:15.366][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2025-09-22 18:26:15.367][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2025-09-22 18:26:15.367][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2025-09-22 18:26:15.367][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2025-09-22 18:26:15.368][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2025-09-22 18:26:15.368][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2025-09-22 18:26:15.369][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2025-09-22 18:26:15.369][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2025-09-22 18:26:15.369][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2025-09-22 18:26:15.370][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2025-09-22 18:26:15.370][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2025-09-22 18:26:15.370][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2025-09-22 18:26:15.371][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2025-09-22 18:26:15.371][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2025-09-22 18:26:15.372][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2025-09-22 18:26:15.372][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2025-09-22 18:26:15.372][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2025-09-22 18:26:15.373][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2025-09-22 18:26:15.373][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2025-09-22 18:26:15.373][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2025-09-22 18:26:15.374][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2025-09-22 18:26:15.374][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2025-09-22 18:26:15.374][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2025-09-22 18:26:15.375][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2025-09-22 18:26:15.375][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2025-09-22 18:26:15.376][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2025-09-22 18:26:15.376][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2025-09-22 18:26:15.376][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2025-09-22 18:26:15.377][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2025-09-22 18:26:15.377][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2025-09-22 18:26:15.377][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2025-09-22 18:26:15.378][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2025-09-22 18:26:15.378][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2025-09-22 18:26:15.379][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2025-09-22 18:26:15.379][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2025-09-22 18:26:15.379][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2025-09-22 18:26:15.380][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2025-09-22 18:26:15.380][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2025-09-22 18:26:15.380][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2025-09-22 18:26:15.381][initialize] This is biodb version 1.17.1.
biodb.DEBUG[2025-09-22 18:26:15.381][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-09-22 18:26:15.382][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2025-09-22 18:26:15.382][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-22 18:26:15.382][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2025-09-22 18:26:15.382][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-22 18:26:15.383][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-22 18:26:15.383][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-22 18:26:15.383][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-22 18:26:15.383][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-22 18:26:15.383][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-22 18:26:15.384][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-22 18:26:15.384][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-22 18:26:15.384][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-22 18:26:15.384][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-22 18:26:15.385][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-22 18:26:15.385][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-22 18:26:15.385][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-22 18:26:15.385][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-22 18:26:15.386][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-22 18:26:15.386][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-22 18:26:15.386][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-22 18:26:15.386][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-22 18:26:15.386][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-22 18:26:15.387][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-22 18:26:15.387][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-22 18:26:15.387][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-22 18:26:15.387][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-22 18:26:15.388][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-22 18:26:15.388][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-22 18:26:15.388][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-22 18:26:15.388][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-22 18:26:15.389][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-22 18:26:15.389][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-22 18:26:15.389][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-22 18:26:15.389][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-22 18:26:15.389][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-22 18:26:15.390][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-22 18:26:15.390][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-22 18:26:15.390][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-22 18:26:15.390][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-22 18:26:15.391][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-22 18:26:15.391][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-22 18:26:15.391][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-22 18:26:15.391][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-22 18:26:15.392][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-22 18:26:15.392][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-22 18:26:15.392][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-22 18:26:15.392][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-22 18:26:15.392][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-22 18:26:15.393][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-22 18:26:15.393][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-22 18:26:15.393][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-22 18:26:15.393][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-22 18:26:15.394][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-22 18:26:15.394][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-22 18:26:15.394][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-22 18:26:15.394][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-22 18:26:15.395][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-22 18:26:15.395][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-22 18:26:15.395][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-22 18:26:15.395][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-22 18:26:15.395][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-22 18:26:15.396][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-22 18:26:15.396][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-22 18:26:15.396][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-22 18:26:15.396][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-22 18:26:15.397][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-22 18:26:15.397][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-22 18:26:15.397][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-22 18:26:15.397][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-22 18:26:15.398][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-22 18:26:15.398][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-22 18:26:15.398][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-22 18:26:15.398][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-22 18:26:15.398][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-22 18:26:15.399][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-22 18:26:15.399][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-22 18:26:15.399][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-22 18:26:15.399][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-22 18:26:15.400][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-22 18:26:15.400][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-22 18:26:15.400][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-22 18:26:15.400][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-22 18:26:15.401][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-22 18:26:15.401][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-22 18:26:15.401][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-22 18:26:15.401][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-22 18:26:15.401][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-22 18:26:15.402][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-22 18:26:15.402][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-22 18:26:15.402][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-22 18:26:15.402][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-22 18:26:15.403][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-22 18:26:15.403][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-22 18:26:15.403][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-22 18:26:15.403][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-22 18:26:15.403][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-22 18:26:15.404][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-22 18:26:15.404][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-22 18:26:15.404][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-22 18:26:15.404][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-22 18:26:15.405][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-22 18:26:15.405][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-22 18:26:15.405][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-22 18:26:15.405][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-22 18:26:15.406][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-22 18:26:15.406][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-22 18:26:15.406][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-22 18:26:15.406][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-22 18:26:15.406][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-22 18:26:15.407][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-22 18:26:15.407][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-22 18:26:15.407][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-22 18:26:15.407][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-22 18:26:15.408][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-22 18:26:15.408][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-22 18:26:15.408][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-22 18:26:15.409][biodb$loadDefinitions] Load definitions from file "/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/biodbChebi/definitions.yml".
biodb.DEBUG[2025-09-22 18:26:15.412][self$getDbsInfo()$define] Define connector chebi.
biodb.DEBUG[2025-09-22 18:26:15.423][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-09-22 18:26:15.423][self$setPropertyValue] Setting property "description" to "NA".
biodb.DEBUG[2025-09-22 18:26:15.424][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-09-22 18:26:15.424][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-09-22 18:26:15.424][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-09-22 18:26:15.424][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-09-22 18:26:15.425][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2025-09-22 18:26:15.425][self$setPropertyValue] Setting property "entry.content.encoding" to "UTF-8".
biodb.DEBUG[2025-09-22 18:26:15.425][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2025-09-22 18:26:15.425][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-09-22 18:26:15.426][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-09-22 18:26:15.426][self$setPropertyValue] Setting property "name" to "ChEBI".
biodb.DEBUG[2025-09-22 18:26:15.426][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-09-22 18:26:15.427][self$setPropertyValue] Setting property "parsing.expr" to "substring-after(//chebi:return/chebi:chebiId,'CHEBI:')".
biodb.DEBUG[2025-09-22 18:26:15.427][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:charge".
biodb.DEBUG[2025-09-22 18:26:15.427][self$setPropertyValue] Setting property "parsing.expr" to "c("//chebi:Formulae/chebi:source[text()='ChEBI']/../chebi:data", "(//chebi:Formulae/chebi:data)[1]")".
biodb.DEBUG[2025-09-22 18:26:15.427][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:inchi".
biodb.DEBUG[2025-09-22 18:26:15.427][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:inchiKey".
biodb.DEBUG[2025-09-22 18:26:15.427][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:DatabaseLinks/chebi:type[text()='KEGG COMPOUND accession']/../chebi:data".
biodb.DEBUG[2025-09-22 18:26:15.427][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:mass".
biodb.DEBUG[2025-09-22 18:26:15.427][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:monoisotopicMass".
biodb.DEBUG[2025-09-22 18:26:15.427][self$setPropertyValue] Setting property "parsing.expr" to "c("//chebi:chebiAsciiName", "//chebi:Synonyms/chebi:data")".
biodb.DEBUG[2025-09-22 18:26:15.427][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:entityStar".
biodb.DEBUG[2025-09-22 18:26:15.427][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:smiles".
biodb.DEBUG[2025-09-22 18:26:15.427][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2025-09-22 18:26:15.427][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-09-22 18:26:15.427][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-09-22 18:26:15.427][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-09-22 18:26:15.427][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2025-09-22 18:26:15.428][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-09-22 18:26:15.428][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-09-22 18:26:15.428][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-09-22 18:26:15.428][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-09-22 18:26:15.429][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-09-22 18:26:15.429][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-09-22 18:26:15.429][self$setPropertyValue] Setting property "urls" to "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-09-22 18:26:15.429][self$setPropertyValue] Setting property "urls" to "https://www.ebi.ac.uk/webservices/chebi/2.0/".
biodb.DEBUG[2025-09-22 18:26:15.429][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-09-22 18:26:15.430][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-09-22 18:26:15.430][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2025-09-22 18:26:15.430][self$setPropertyValue] Setting property "xml.ns" to "https://www.ebi.ac.uk/webservices/chebi".
biodb.DEBUG[2025-09-22 18:26:15.430][self$setPropertyValue] Setting property "xml.ns" to "http://www.w3.org/2001/XMLSchema".
biodb.DEBUG[2025-09-22 18:26:15.431][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2025-09-22 18:26:15.431][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2025-09-22 18:26:15.431][self$getEntryFields()$define] Define field n_stars.
biodb.DEBUG[2025-09-22 18:26:15.432][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2025-09-22 18:26:15.432][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2025-09-22 18:26:15.433][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2025-09-22 18:26:15.434][super$initialize] Initialize connector chebi.
biodb.DEBUG[2025-09-22 18:26:15.435][biodb$getFactory()$createConn] Creating new connector chebi for database class chebi .
biodb.INFO [2025-09-22 18:26:15.436][biodb::testThat]
biodb.INFO [2025-09-22 18:26:15.436][biodb::testThat] Running test function  test.chebi.wsGetLiteEntity  (" Web service getLiteEntity works fine. ").
biodb.INFO [2025-09-22 18:26:15.436][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-09-22 18:26:15.437][biodb::testThat]
sched.DEBUG[2025-09-22 18:26:15.437][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/webservice?wsdl".
fscache.INFO [2025-09-22 18:26:15.438][private$cache$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/sched.
fscache.DEBUG[2025-09-22 18:26:15.440][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/sched/a2ed8f44d213d85be0d7e9a0448c78ad.content.
sched.DEBUG[2025-09-22 18:26:15.440][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
sched.DEBUG[2025-09-22 18:26:15.442][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=2571&searchCategory=CHEBI ID&maximumResults=10&starsCategory=ALL".
fscache.INFO [2025-09-22 18:26:15.442][private$cache$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/sched.
fscache.DEBUG[2025-09-22 18:26:15.443][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/sched/45b8073beb9f4a9f751edf98e80ca9dd.content.
sched.DEBUG[2025-09-22 18:26:15.443][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.INFO [2025-09-22 18:26:15.447][biodb$terminate] Closing BiodbMain instance...
biodb.INFO [2025-09-22 18:26:15.447][self$deleteConn] Connector "chebi" deleted.
biodb.DEBUG[2025-09-22 18:26:15.447][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2025-09-22 18:26:15.447][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-22 18:26:15.448][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-22 18:26:15.448][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-22 18:26:15.448][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-22 18:26:15.449][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2025-09-22 18:26:15.449][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2025-09-22 18:26:15.450][biodb::testContext]
biodb.INFO [2025-09-22 18:26:15.450][biodb::testContext] ********************************************************************************
biodb.INFO [2025-09-22 18:26:15.451][biodb::testContext] Test context - Non regression tests
biodb.INFO [2025-09-22 18:26:15.451][biodb::testContext] ********************************************************************************
biodb.INFO [2025-09-22 18:26:15.451][biodb::testContext]
biodb.INFO [2025-09-22 18:26:15.452][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.17.1.
biodb.DEBUG[2025-09-22 18:26:15.453][self$loadDefinitions] Load definitions from file "/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/biodb/definitions.yml".
biodb.DEBUG[2025-09-22 18:26:15.454][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-09-22 18:26:15.455][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2025-09-22 18:26:15.455][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2025-09-22 18:26:15.455][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-22 18:26:15.455][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-22 18:26:15.456][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-22 18:26:15.456][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2025-09-22 18:26:15.456][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2025-09-22 18:26:15.456][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-22 18:26:15.457][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-22 18:26:15.457][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-22 18:26:15.457][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2025-09-22 18:26:15.458][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2025-09-22 18:26:15.458][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-22 18:26:15.458][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-22 18:26:15.458][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-22 18:26:15.459][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2025-09-22 18:26:15.459][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2025-09-22 18:26:15.459][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2025-09-22 18:26:15.459][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-22 18:26:15.460][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-22 18:26:15.460][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-22 18:26:15.460][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2025-09-22 18:26:15.460][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2025-09-22 18:26:15.461][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2025-09-22 18:26:15.461][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-22 18:26:15.461][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-22 18:26:15.461][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-22 18:26:15.462][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2025-09-22 18:26:15.462][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2025-09-22 18:26:15.462][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-22 18:26:15.462][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-22 18:26:15.462][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-22 18:26:15.463][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2025-09-22 18:26:15.463][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2025-09-22 18:26:15.463][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2025-09-22 18:26:15.464][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-22 18:26:15.464][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-22 18:26:15.464][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-22 18:26:15.464][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2025-09-22 18:26:15.464][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2025-09-22 18:26:15.465][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-22 18:26:15.465][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-22 18:26:15.465][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-22 18:26:15.465][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2025-09-22 18:26:15.466][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2025-09-22 18:26:15.466][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2025-09-22 18:26:15.466][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-22 18:26:15.466][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-22 18:26:15.467][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-22 18:26:15.467][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2025-09-22 18:26:15.467][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2025-09-22 18:26:15.467][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2025-09-22 18:26:15.468][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2025-09-22 18:26:15.468][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2025-09-22 18:26:15.468][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2025-09-22 18:26:15.468][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-22 18:26:15.469][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-22 18:26:15.469][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-22 18:26:15.469][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2025-09-22 18:26:15.469][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2025-09-22 18:26:15.470][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-22 18:26:15.470][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-22 18:26:15.470][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-22 18:26:15.470][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2025-09-22 18:26:15.471][self$set] Set key entries.sep to "|".
biodb.DEBUG[2025-09-22 18:26:15.471][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-22 18:26:15.471][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-22 18:26:15.471][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-22 18:26:15.472][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2025-09-22 18:26:15.472][self$set] Set key offline to FALSE.
biodb.DEBUG[2025-09-22 18:26:15.472][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-22 18:26:15.472][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-22 18:26:15.473][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-22 18:26:15.473][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2025-09-22 18:26:15.473][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2025-09-22 18:26:15.473][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2025-09-22 18:26:15.474][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-22 18:26:15.474][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-22 18:26:15.474][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-22 18:26:15.474][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2025-09-22 18:26:15.475][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2025-09-22 18:26:15.481][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2025-09-22 18:26:15.481][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-22 18:26:15.481][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-22 18:26:15.482][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-22 18:26:15.482][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2025-09-22 18:26:15.482][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2025-09-22 18:26:15.482][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2025-09-22 18:26:15.483][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-22 18:26:15.483][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-22 18:26:15.483][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-22 18:26:15.483][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2025-09-22 18:26:15.484][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-09-22 18:26:15.484][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2025-09-22 18:26:15.485][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-09-22 18:26:15.485][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-09-22 18:26:15.485][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-09-22 18:26:15.485][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-09-22 18:26:15.486][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-09-22 18:26:15.486][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-09-22 18:26:15.486][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2025-09-22 18:26:15.486][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-09-22 18:26:15.487][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-09-22 18:26:15.487][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2025-09-22 18:26:15.487][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-09-22 18:26:15.488][self$setPropertyValue] Setting property "parsing.expr" to "<NULL>".
biodb.DEBUG[2025-09-22 18:26:15.488][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-09-22 18:26:15.488][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-09-22 18:26:15.488][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-09-22 18:26:15.488][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-09-22 18:26:15.488][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2025-09-22 18:26:15.488][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2025-09-22 18:26:15.488][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-09-22 18:26:15.489][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-09-22 18:26:15.489][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-09-22 18:26:15.489][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-09-22 18:26:15.489][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-09-22 18:26:15.490][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-09-22 18:26:15.490][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-09-22 18:26:15.490][self$setPropertyValue] Setting property "urls" to "<NULL>".
biodb.DEBUG[2025-09-22 18:26:15.490][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-09-22 18:26:15.491][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-09-22 18:26:15.491][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-09-22 18:26:15.491][self$setPropertyValue] Setting property "xml.ns" to "<NULL>".
biodb.DEBUG[2025-09-22 18:26:15.491][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2025-09-22 18:26:15.492][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-09-22 18:26:15.492][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2025-09-22 18:26:15.493][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-09-22 18:26:15.493][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-09-22 18:26:15.493][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-09-22 18:26:15.493][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-09-22 18:26:15.494][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-09-22 18:26:15.494][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-09-22 18:26:15.494][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2025-09-22 18:26:15.494][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-09-22 18:26:15.495][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-09-22 18:26:15.495][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2025-09-22 18:26:15.495][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-09-22 18:26:15.495][self$setPropertyValue] Setting property "parsing.expr" to "<NULL>".
biodb.DEBUG[2025-09-22 18:26:15.496][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-09-22 18:26:15.496][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-09-22 18:26:15.496][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-09-22 18:26:15.496][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-09-22 18:26:15.496][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2025-09-22 18:26:15.496][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2025-09-22 18:26:15.496][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-09-22 18:26:15.497][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-09-22 18:26:15.497][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-09-22 18:26:15.497][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-09-22 18:26:15.497][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-09-22 18:26:15.498][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-09-22 18:26:15.498][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-09-22 18:26:15.498][self$setPropertyValue] Setting property "urls" to "<NULL>".
biodb.DEBUG[2025-09-22 18:26:15.498][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-09-22 18:26:15.499][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-09-22 18:26:15.499][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-09-22 18:26:15.499][self$setPropertyValue] Setting property "xml.ns" to "<NULL>".
biodb.DEBUG[2025-09-22 18:26:15.499][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2025-09-22 18:26:15.500][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-09-22 18:26:15.500][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2025-09-22 18:26:15.500][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-09-22 18:26:15.501][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-09-22 18:26:15.501][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-09-22 18:26:15.501][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-09-22 18:26:15.502][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-09-22 18:26:15.502][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-09-22 18:26:15.502][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2025-09-22 18:26:15.502][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-09-22 18:26:15.503][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2025-09-22 18:26:15.503][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2025-09-22 18:26:15.503][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-09-22 18:26:15.503][self$setPropertyValue] Setting property "parsing.expr" to "<NULL>".
biodb.DEBUG[2025-09-22 18:26:15.504][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-09-22 18:26:15.504][self$setPropertyValue] Setting property "searchable.fields" to "<NULL>".
biodb.DEBUG[2025-09-22 18:26:15.504][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-09-22 18:26:15.504][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-09-22 18:26:15.505][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-09-22 18:26:15.505][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-09-22 18:26:15.505][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-09-22 18:26:15.505][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-09-22 18:26:15.506][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-09-22 18:26:15.506][self$setPropertyValue] Setting property "urls" to "<NULL>".
biodb.DEBUG[2025-09-22 18:26:15.506][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-09-22 18:26:15.506][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-09-22 18:26:15.507][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-09-22 18:26:15.507][self$setPropertyValue] Setting property "xml.ns" to "<NULL>".
biodb.DEBUG[2025-09-22 18:26:15.507][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2025-09-22 18:26:15.508][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-09-22 18:26:15.508][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2025-09-22 18:26:15.511][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-09-22 18:26:15.511][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-09-22 18:26:15.511][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-09-22 18:26:15.512][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-09-22 18:26:15.512][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-09-22 18:26:15.512][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-09-22 18:26:15.513][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2025-09-22 18:26:15.513][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-09-22 18:26:15.513][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2025-09-22 18:26:15.513][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2025-09-22 18:26:15.514][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-09-22 18:26:15.514][self$setPropertyValue] Setting property "parsing.expr" to "<NULL>".
biodb.DEBUG[2025-09-22 18:26:15.514][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-09-22 18:26:15.514][self$setPropertyValue] Setting property "searchable.fields" to "<NULL>".
biodb.DEBUG[2025-09-22 18:26:15.515][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-09-22 18:26:15.515][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-09-22 18:26:15.515][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-09-22 18:26:15.515][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-09-22 18:26:15.516][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-09-22 18:26:15.516][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-09-22 18:26:15.516][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-09-22 18:26:15.516][self$setPropertyValue] Setting property "urls" to "<NULL>".
biodb.DEBUG[2025-09-22 18:26:15.517][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-09-22 18:26:15.517][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-09-22 18:26:15.517][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-09-22 18:26:15.517][self$setPropertyValue] Setting property "xml.ns" to "<NULL>".
biodb.DEBUG[2025-09-22 18:26:15.518][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-09-22 18:26:15.518][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2025-09-22 18:26:15.518][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-22 18:26:15.519][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-22 18:26:15.519][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-22 18:26:15.519][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-22 18:26:15.519][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-22 18:26:15.519][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-22 18:26:15.520][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-22 18:26:15.520][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-22 18:26:15.520][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-22 18:26:15.520][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-22 18:26:15.521][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-22 18:26:15.521][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-22 18:26:15.521][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-22 18:26:15.521][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-22 18:26:15.522][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-22 18:26:15.522][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-22 18:26:15.522][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-22 18:26:15.522][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-22 18:26:15.523][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-22 18:26:15.523][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-22 18:26:15.523][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-22 18:26:15.523][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-22 18:26:15.523][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-22 18:26:15.524][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-22 18:26:15.524][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-22 18:26:15.524][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-22 18:26:15.524][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-22 18:26:15.525][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-22 18:26:15.525][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-22 18:26:15.525][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-22 18:26:15.525][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-22 18:26:15.525][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-22 18:26:15.526][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-22 18:26:15.526][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-22 18:26:15.526][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-22 18:26:15.526][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-22 18:26:15.527][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-22 18:26:15.527][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-22 18:26:15.527][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-22 18:26:15.527][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-22 18:26:15.528][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-22 18:26:15.528][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-22 18:26:15.528][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-22 18:26:15.528][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-22 18:26:15.528][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-22 18:26:15.529][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-22 18:26:15.529][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-22 18:26:15.529][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-22 18:26:15.529][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-22 18:26:15.530][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-22 18:26:15.530][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-22 18:26:15.530][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-22 18:26:15.530][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-22 18:26:15.531][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-22 18:26:15.531][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-22 18:26:15.531][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-22 18:26:15.531][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-22 18:26:15.531][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-22 18:26:15.532][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-22 18:26:15.532][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-22 18:26:15.532][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-22 18:26:15.532][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-22 18:26:15.533][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-22 18:26:15.533][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-22 18:26:15.533][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-22 18:26:15.533][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-22 18:26:15.533][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-22 18:26:15.534][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-22 18:26:15.534][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-22 18:26:15.534][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-22 18:26:15.534][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-22 18:26:15.535][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-22 18:26:15.535][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-22 18:26:15.535][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-22 18:26:15.535][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-22 18:26:15.536][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-22 18:26:15.536][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-22 18:26:15.536][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-22 18:26:15.536][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-22 18:26:15.536][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-22 18:26:15.537][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-22 18:26:15.537][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2025-09-22 18:26:15.537][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2025-09-22 18:26:15.538][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2025-09-22 18:26:15.538][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2025-09-22 18:26:15.539][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2025-09-22 18:26:15.539][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2025-09-22 18:26:15.539][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2025-09-22 18:26:15.540][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2025-09-22 18:26:15.540][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2025-09-22 18:26:15.540][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2025-09-22 18:26:15.541][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2025-09-22 18:26:15.541][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2025-09-22 18:26:15.542][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2025-09-22 18:26:15.542][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2025-09-22 18:26:15.542][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2025-09-22 18:26:15.543][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2025-09-22 18:26:15.543][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2025-09-22 18:26:15.544][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2025-09-22 18:26:15.544][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2025-09-22 18:26:15.544][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2025-09-22 18:26:15.545][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2025-09-22 18:26:15.545][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2025-09-22 18:26:15.545][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2025-09-22 18:26:15.546][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2025-09-22 18:26:15.546][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2025-09-22 18:26:15.547][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2025-09-22 18:26:15.547][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2025-09-22 18:26:15.547][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2025-09-22 18:26:15.548][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2025-09-22 18:26:15.548][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2025-09-22 18:26:15.548][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2025-09-22 18:26:15.549][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2025-09-22 18:26:15.549][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2025-09-22 18:26:15.550][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2025-09-22 18:26:15.550][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2025-09-22 18:26:15.550][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2025-09-22 18:26:15.551][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2025-09-22 18:26:15.551][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2025-09-22 18:26:15.551][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2025-09-22 18:26:15.552][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2025-09-22 18:26:15.552][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2025-09-22 18:26:15.553][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2025-09-22 18:26:15.553][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2025-09-22 18:26:15.553][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2025-09-22 18:26:15.554][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2025-09-22 18:26:15.554][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2025-09-22 18:26:15.554][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2025-09-22 18:26:15.555][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2025-09-22 18:26:15.555][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2025-09-22 18:26:15.555][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2025-09-22 18:26:15.556][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2025-09-22 18:26:15.556][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2025-09-22 18:26:15.557][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2025-09-22 18:26:15.557][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2025-09-22 18:26:15.557][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2025-09-22 18:26:15.558][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2025-09-22 18:26:15.558][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2025-09-22 18:26:15.558][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2025-09-22 18:26:15.559][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2025-09-22 18:26:15.559][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2025-09-22 18:26:15.559][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2025-09-22 18:26:15.560][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2025-09-22 18:26:15.560][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2025-09-22 18:26:15.561][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2025-09-22 18:26:15.561][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2025-09-22 18:26:15.561][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2025-09-22 18:26:15.562][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2025-09-22 18:26:15.562][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2025-09-22 18:26:15.562][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2025-09-22 18:26:15.563][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2025-09-22 18:26:15.563][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2025-09-22 18:26:15.564][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2025-09-22 18:26:15.564][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2025-09-22 18:26:15.564][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2025-09-22 18:26:15.565][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2025-09-22 18:26:15.565][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2025-09-22 18:26:15.565][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2025-09-22 18:26:15.566][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2025-09-22 18:26:15.566][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2025-09-22 18:26:15.566][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2025-09-22 18:26:15.567][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2025-09-22 18:26:15.567][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2025-09-22 18:26:15.568][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2025-09-22 18:26:15.568][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2025-09-22 18:26:15.569][initialize] This is biodb version 1.17.1.
biodb.DEBUG[2025-09-22 18:26:15.569][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-09-22 18:26:15.569][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2025-09-22 18:26:15.569][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-22 18:26:15.570][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2025-09-22 18:26:15.570][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-22 18:26:15.570][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-22 18:26:15.570][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-22 18:26:15.571][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-22 18:26:15.571][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-22 18:26:15.571][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-22 18:26:15.571][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-22 18:26:15.572][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-22 18:26:15.572][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-22 18:26:15.572][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-22 18:26:15.572][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-22 18:26:15.572][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-22 18:26:15.573][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-22 18:26:15.573][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-22 18:26:15.573][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-22 18:26:15.573][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-22 18:26:15.574][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-22 18:26:15.574][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-22 18:26:15.574][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-22 18:26:15.574][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-22 18:26:15.575][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-22 18:26:15.575][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-22 18:26:15.575][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-22 18:26:15.575][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-22 18:26:15.575][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-22 18:26:15.576][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-22 18:26:15.576][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-22 18:26:15.576][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-22 18:26:15.576][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-22 18:26:15.577][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-22 18:26:15.577][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-22 18:26:15.577][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-22 18:26:15.577][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-22 18:26:15.578][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-22 18:26:15.578][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-22 18:26:15.578][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-22 18:26:15.578][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-22 18:26:15.578][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-22 18:26:15.579][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-22 18:26:15.579][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-22 18:26:15.579][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-22 18:26:15.579][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-22 18:26:15.580][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-22 18:26:15.580][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-22 18:26:15.580][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-22 18:26:15.580][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-22 18:26:15.581][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-22 18:26:15.581][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-22 18:26:15.581][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-22 18:26:15.581][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-22 18:26:15.581][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-22 18:26:15.582][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-22 18:26:15.582][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-22 18:26:15.582][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-22 18:26:15.582][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-22 18:26:15.583][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-22 18:26:15.583][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-22 18:26:15.583][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-22 18:26:15.583][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-22 18:26:15.584][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-22 18:26:15.584][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-22 18:26:15.584][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-22 18:26:15.584][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-22 18:26:15.585][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-22 18:26:15.585][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-22 18:26:15.588][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-22 18:26:15.588][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-22 18:26:15.588][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-22 18:26:15.589][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-22 18:26:15.589][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-22 18:26:15.589][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-22 18:26:15.589][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-22 18:26:15.589][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-22 18:26:15.590][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-22 18:26:15.590][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-22 18:26:15.590][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-22 18:26:15.590][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-22 18:26:15.591][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-22 18:26:15.591][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-22 18:26:15.591][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-22 18:26:15.591][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-22 18:26:15.592][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-22 18:26:15.592][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-22 18:26:15.592][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-22 18:26:15.592][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-22 18:26:15.593][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-22 18:26:15.593][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-22 18:26:15.593][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-22 18:26:15.593][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-22 18:26:15.593][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-22 18:26:15.594][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-22 18:26:15.594][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-22 18:26:15.594][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-22 18:26:15.594][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-22 18:26:15.595][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-22 18:26:15.595][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-22 18:26:15.595][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-22 18:26:15.595][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-22 18:26:15.596][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-22 18:26:15.596][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-22 18:26:15.596][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-22 18:26:15.596][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-22 18:26:15.596][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-22 18:26:15.597][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-22 18:26:15.597][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-22 18:26:15.597][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-22 18:26:15.597][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-22 18:26:15.598][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-22 18:26:15.598][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-22 18:26:15.598][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-22 18:26:15.598][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-22 18:26:15.599][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-22 18:26:15.599][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-22 18:26:15.599][biodb$loadDefinitions] Load definitions from file "/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/biodbChebi/definitions.yml".
biodb.DEBUG[2025-09-22 18:26:15.603][self$getDbsInfo()$define] Define connector chebi.
biodb.DEBUG[2025-09-22 18:26:15.612][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-09-22 18:26:15.613][self$setPropertyValue] Setting property "description" to "NA".
biodb.DEBUG[2025-09-22 18:26:15.613][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-09-22 18:26:15.613][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-09-22 18:26:15.614][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-09-22 18:26:15.614][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-09-22 18:26:15.614][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2025-09-22 18:26:15.614][self$setPropertyValue] Setting property "entry.content.encoding" to "UTF-8".
biodb.DEBUG[2025-09-22 18:26:15.615][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2025-09-22 18:26:15.615][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-09-22 18:26:15.615][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-09-22 18:26:15.616][self$setPropertyValue] Setting property "name" to "ChEBI".
biodb.DEBUG[2025-09-22 18:26:15.616][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-09-22 18:26:15.616][self$setPropertyValue] Setting property "parsing.expr" to "substring-after(//chebi:return/chebi:chebiId,'CHEBI:')".
biodb.DEBUG[2025-09-22 18:26:15.616][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:charge".
biodb.DEBUG[2025-09-22 18:26:15.616][self$setPropertyValue] Setting property "parsing.expr" to "c("//chebi:Formulae/chebi:source[text()='ChEBI']/../chebi:data", "(//chebi:Formulae/chebi:data)[1]")".
biodb.DEBUG[2025-09-22 18:26:15.616][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:inchi".
biodb.DEBUG[2025-09-22 18:26:15.616][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:inchiKey".
biodb.DEBUG[2025-09-22 18:26:15.616][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:DatabaseLinks/chebi:type[text()='KEGG COMPOUND accession']/../chebi:data".
biodb.DEBUG[2025-09-22 18:26:15.616][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:mass".
biodb.DEBUG[2025-09-22 18:26:15.616][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:monoisotopicMass".
biodb.DEBUG[2025-09-22 18:26:15.616][self$setPropertyValue] Setting property "parsing.expr" to "c("//chebi:chebiAsciiName", "//chebi:Synonyms/chebi:data")".
biodb.DEBUG[2025-09-22 18:26:15.616][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:entityStar".
biodb.DEBUG[2025-09-22 18:26:15.616][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:smiles".
biodb.DEBUG[2025-09-22 18:26:15.617][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2025-09-22 18:26:15.617][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-09-22 18:26:15.617][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-09-22 18:26:15.617][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-09-22 18:26:15.617][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2025-09-22 18:26:15.617][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-09-22 18:26:15.618][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-09-22 18:26:15.618][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-09-22 18:26:15.618][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-09-22 18:26:15.618][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-09-22 18:26:15.619][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-09-22 18:26:15.619][self$setPropertyValue] Setting property "urls" to "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-09-22 18:26:15.619][self$setPropertyValue] Setting property "urls" to "https://www.ebi.ac.uk/webservices/chebi/2.0/".
biodb.DEBUG[2025-09-22 18:26:15.619][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-09-22 18:26:15.620][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-09-22 18:26:15.620][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2025-09-22 18:26:15.620][self$setPropertyValue] Setting property "xml.ns" to "https://www.ebi.ac.uk/webservices/chebi".
biodb.DEBUG[2025-09-22 18:26:15.620][self$setPropertyValue] Setting property "xml.ns" to "http://www.w3.org/2001/XMLSchema".
biodb.DEBUG[2025-09-22 18:26:15.621][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2025-09-22 18:26:15.621][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2025-09-22 18:26:15.622][self$getEntryFields()$define] Define field n_stars.
biodb.DEBUG[2025-09-22 18:26:15.622][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2025-09-22 18:26:15.622][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2025-09-22 18:26:15.623][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2025-09-22 18:26:15.624][super$initialize] Initialize connector chebi.
biodb.DEBUG[2025-09-22 18:26:15.626][biodb$getFactory()$createConn] Creating new connector chebi for database class chebi .
biodb.INFO [2025-09-22 18:26:15.626][biodb::testThat]
biodb.INFO [2025-09-22 18:26:15.626][biodb::testThat] Running test function  test.chebi.encoding.issue.in.xml  (" ChEBI encoding issue in XML is handled. ").
biodb.INFO [2025-09-22 18:26:15.627][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-09-22 18:26:15.627][biodb::testThat]
sched.DEBUG[2025-09-22 18:26:15.628][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/webservice?wsdl".
fscache.INFO [2025-09-22 18:26:15.628][private$cache$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/sched.
fscache.DEBUG[2025-09-22 18:26:15.630][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/sched/a2ed8f44d213d85be0d7e9a0448c78ad.content.
sched.DEBUG[2025-09-22 18:26:15.631][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
sched.DEBUG[2025-09-22 18:26:15.632][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=2571&searchCategory=CHEBI ID&maximumResults=10&starsCategory=ALL".
fscache.INFO [2025-09-22 18:26:15.633][private$cache$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/sched.
fscache.DEBUG[2025-09-22 18:26:15.634][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/sched/45b8073beb9f4a9f751edf98e80ca9dd.content.
sched.DEBUG[2025-09-22 18:26:15.634][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-09-22 18:26:15.635][private$loadEntries] Creating entries from ids [1]: "2571".
biodb.DEBUG[2025-09-22 18:26:15.637][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-09-22 18:26:15.637][cch$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-09-22 18:26:15.640][FUN] Found encoding UTF-8 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/2571.xml.
biodb.DEBUG[2025-09-22 18:26:15.641][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-09-22 18:26:15.641][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-09-22 18:26:15.642][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-09-22 18:26:15.642][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-22 18:26:15.642][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-22 18:26:15.643][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-22 18:26:15.645][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-22 18:26:15.645][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-22 18:26:15.645][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-22 18:26:15.645][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-22 18:26:15.647][ef$get] Asked field names are: accession.
biodb.TRACE[2025-09-22 18:26:15.647][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-22 18:26:15.647][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:15.648][ef$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:15.648][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-22 18:26:15.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-22 18:26:15.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:15.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:15.649][ef$get] Asked field names are: charge.
biodb.TRACE[2025-09-22 18:26:15.649][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-09-22 18:26:15.650][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:15.650][ef$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:15.650][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-09-22 18:26:15.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-09-22 18:26:15.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:15.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:15.651][ef$get] Asked field names are: formula.
biodb.TRACE[2025-09-22 18:26:15.652][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-22 18:26:15.652][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:15.652][ef$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:15.652][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-09-22 18:26:15.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-22 18:26:15.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:15.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:15.654][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-09-22 18:26:15.654][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-22 18:26:15.654][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:15.654][ef$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:15.655][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-22 18:26:15.655][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-22 18:26:15.655][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:15.655][ef$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:15.656][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-09-22 18:26:15.656][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-09-22 18:26:15.656][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:15.657][ef$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:15.657][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-09-22 18:26:15.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-09-22 18:26:15.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:15.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:15.658][ef$get] Asked field names are: mass.
biodb.TRACE[2025-09-22 18:26:15.658][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:15.658][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:15.659][ef$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:15.659][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-09-22 18:26:15.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-22 18:26:15.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:15.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:15.660][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:15.660][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:15.661][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:15.661][ef$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:15.661][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:15.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-22 18:26:15.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:15.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:15.662][ef$get] Asked field names are: name.
biodb.TRACE[2025-09-22 18:26:15.663][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-09-22 18:26:15.663][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:15.663][ef$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:15.664][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-22 18:26:15.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-22 18:26:15.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:15.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:15.665][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-09-22 18:26:15.665][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-09-22 18:26:15.665][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:15.665][ef$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:15.666][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-09-22 18:26:15.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-09-22 18:26:15.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:15.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:15.667][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-09-22 18:26:15.667][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-22 18:26:15.667][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:15.668][ef$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:15.668][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-09-22 18:26:15.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-22 18:26:15.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:15.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:15.669][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-22 18:26:15.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-22 18:26:15.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:15.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:15.670][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-22 18:26:15.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-22 18:26:15.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:15.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:15.671][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-22 18:26:15.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-22 18:26:15.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:15.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:15.672][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-22 18:26:15.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-22 18:26:15.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:15.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:15.673][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-22 18:26:15.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-22 18:26:15.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:15.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:15.674][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-22 18:26:15.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-22 18:26:15.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:15.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:15.675][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-22 18:26:15.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-22 18:26:15.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:15.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:15.676][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-22 18:26:15.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-22 18:26:15.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:15.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:15.680][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-22 18:26:15.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-22 18:26:15.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:15.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-22 18:26:15.681][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-22 18:26:15.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-22 18:26:15.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-22 18:26:15.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-22 18:26:15.682][self$createEntryFromContent] Accession numbers: 2571.
biodb.INFO [2025-09-22 18:26:15.683][biodb$terminate] Closing BiodbMain instance...
biodb.INFO [2025-09-22 18:26:15.684][self$deleteConn] Connector "chebi" deleted.
biodb.DEBUG[2025-09-22 18:26:15.684][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2025-09-22 18:26:15.684][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-22 18:26:15.684][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-22 18:26:15.685][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-22 18:26:15.685][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-22 18:26:15.685][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2025-09-22 18:26:15.685][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 357 ]
> 
> proc.time()
   user  system elapsed 
  4.560   0.260   6.877

Example timings

biodbChebi.Rcheck/biodbChebi-Ex.timings

nameusersystemelapsed
ChebiConn0.6890.2150.911
ChebiEntry0.0820.0050.088