| Back to Multiple platform build/check report for BioC 3.23: simplified long |
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This page was generated on 2026-01-22 11:35 -0500 (Thu, 22 Jan 2026).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 24.04.3 LTS) | x86_64 | R Under development (unstable) (2026-01-15 r89304) -- "Unsuffered Consequences" | 4808 |
| kjohnson3 | macOS 13.7.7 Ventura | arm64 | R Under development (unstable) (2026-01-15 r89304) -- "Unsuffered Consequences" | 4542 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 2076/2345 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| Spectra 1.21.1 (landing page) RforMassSpectrometry Package Maintainer
| nebbiolo1 | Linux (Ubuntu 24.04.3 LTS) / x86_64 | OK | OK | OK |  | ||||||||
| kjohnson3 | macOS 13.7.7 Ventura / arm64 | OK | ERROR | skipped | skipped | |||||||||
|
To the developers/maintainers of the Spectra package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/Spectra.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: Spectra |
| Version: 1.21.1 |
| Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data Spectra |
| StartedAt: 2026-01-21 17:44:23 -0500 (Wed, 21 Jan 2026) |
| EndedAt: 2026-01-21 17:44:38 -0500 (Wed, 21 Jan 2026) |
| EllapsedTime: 15.2 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
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### Running command:
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### /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data Spectra
###
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* checking for file ‘Spectra/DESCRIPTION’ ... OK
* preparing ‘Spectra’:
* checking DESCRIPTION meta-information ... OK
* installing the package (it is needed to build vignettes)
* creating vignettes ... ERROR
--- re-building ‘MsBackend.Rmd’ using rmarkdown
--- finished re-building ‘MsBackend.Rmd’
--- re-building ‘Spectra-large-scale.Rmd’ using rmarkdown
Quitting from Spectra-large-scale.Rmd:55-70 [unnamed-chunk-2]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `h()`:
! error in evaluating the argument 'object' in selecting a method for function 'backendInitialize': The use of 'MsBackendMzR' requires package 'mzR'. Please install with 'BiocInstaller::install("mzR")'
---
Backtrace:
▆
1. ├─Spectra::Spectra(fls, source = MsBackendMzR())
2. ├─Spectra::Spectra(fls, source = MsBackendMzR())
3. │ └─Spectra (local) .local(object, ...)
4. │ └─Spectra:::.create_spectra(...)
5. │ └─ProtGenerics::backendInitialize(...)
6. ├─Spectra::MsBackendMzR()
7. │ └─base::stop(...)
8. └─base::.handleSimpleError(...)
9. └─base (local) h(simpleError(msg, call))
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'Spectra-large-scale.Rmd' failed with diagnostics:
error in evaluating the argument 'object' in selecting a method for function 'backendInitialize': The use of 'MsBackendMzR' requires package 'mzR'. Please install with 'BiocInstaller::install("mzR")'
--- failed re-building ‘Spectra-large-scale.Rmd’
--- re-building ‘Spectra.Rmd’ using rmarkdown
Quitting from Spectra.Rmd:152-156 [spectra-msbackendmzr]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `h()`:
! error in evaluating the argument 'object' in selecting a method for function 'backendInitialize': The use of 'MsBackendMzR' requires package 'mzR'. Please install with 'BiocInstaller::install("mzR")'
---
Backtrace:
▆
1. ├─Spectra::Spectra(fls, source = MsBackendMzR())
2. ├─Spectra::Spectra(fls, source = MsBackendMzR())
3. │ └─Spectra (local) .local(object, ...)
4. │ └─Spectra:::.create_spectra(...)
5. │ └─ProtGenerics::backendInitialize(...)
6. ├─Spectra::MsBackendMzR()
7. │ └─base::stop(...)
8. └─base::.handleSimpleError(...)
9. └─base (local) h(simpleError(msg, call))
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'Spectra.Rmd' failed with diagnostics:
error in evaluating the argument 'object' in selecting a method for function 'backendInitialize': The use of 'MsBackendMzR' requires package 'mzR'. Please install with 'BiocInstaller::install("mzR")'
--- failed re-building ‘Spectra.Rmd’
SUMMARY: processing the following files failed:
‘Spectra-large-scale.Rmd’ ‘Spectra.Rmd’
Error: Vignette re-building failed.
Execution halted