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This page was generated on 2025-08-15 12:07 -0400 (Fri, 15 Aug 2025).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 24.04.3 LTS)x86_644.5.1 (2025-06-13) -- "Great Square Root" 4818
palomino8Windows Server 2022 Datacenterx644.5.1 (2025-06-13 ucrt) -- "Great Square Root" 4554
lconwaymacOS 12.7.1 Montereyx86_644.5.1 (2025-06-13) -- "Great Square Root" 4595
kjohnson3macOS 13.7.7 Venturaarm644.5.1 Patched (2025-06-14 r88325) -- "Great Square Root" 4537
taishanLinux (openEuler 24.03 LTS)aarch644.5.0 (2025-04-11) -- "How About a Twenty-Six" 4535
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 2032/2317HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
SparseArray 1.9.1  (landing page)
Hervé Pagès
Snapshot Date: 2025-08-14 13:45 -0400 (Thu, 14 Aug 2025)
git_url: https://git.bioconductor.org/packages/SparseArray
git_branch: devel
git_last_commit: 0a2c62a
git_last_commit_date: 2025-07-18 01:10:47 -0400 (Fri, 18 Jul 2025)
nebbiolo2Linux (Ubuntu 24.04.3 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
palomino8Windows Server 2022 Datacenter / x64  OK    OK    WARNINGS    OK  UNNEEDED, same version is already published
lconwaymacOS 12.7.1 Monterey / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published
kjohnson3macOS 13.7.7 Ventura / arm64  OK    OK    OK    OK  UNNEEDED, same version is already published
taishanLinux (openEuler 24.03 LTS) / aarch64  OK    ERROR  skipped

BUILD BIN results for SparseArray on palomino8

To the developers/maintainers of the SparseArray package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/SparseArray.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: SparseArray
Version: 1.9.1
Command: rm -rf SparseArray.buildbin-libdir && mkdir SparseArray.buildbin-libdir && F:\biocbuild\bbs-3.22-bioc\R\bin\R.exe CMD INSTALL --build --library=SparseArray.buildbin-libdir SparseArray_1.9.1.tar.gz
StartedAt: 2025-08-15 11:22:50 -0400 (Fri, 15 Aug 2025)
EndedAt: 2025-08-15 11:25:44 -0400 (Fri, 15 Aug 2025)
EllapsedTime: 174.9 seconds
RetCode: 0
Status:   OK  
PackageFile: SparseArray_1.9.1.zip
PackageFileSize: 1.901 MiB

Command output

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### Running command:
###
###   rm -rf SparseArray.buildbin-libdir && mkdir SparseArray.buildbin-libdir && F:\biocbuild\bbs-3.22-bioc\R\bin\R.exe CMD INSTALL --build --library=SparseArray.buildbin-libdir SparseArray_1.9.1.tar.gz
###
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* installing *source* package 'SparseArray' ...
** this is package 'SparseArray' version '1.9.1'
** using staged installation
** libs
using C compiler: 'gcc.exe (GCC) 14.2.0'
gcc  -I"F:/biocbuild/bbs-3.22-bioc/R/include" -DNDEBUG  -I'F:/biocbuild/bbs-3.22-bioc/R/library/S4Vectors/include' -I'F:/biocbuild/bbs-3.22-bioc/R/library/IRanges/include' -I'F:/biocbuild/bbs-3.22-bioc/R/library/XVector/include'   -I"C:/rtools45/x86_64-w64-mingw32.static.posix/include"   -fopenmp   -O2 -Wall -std=gnu2x  -mfpmath=sse -msse2 -mstackrealign   -c ExtendableJaggedArray.c -o ExtendableJaggedArray.o
ExtendableJaggedArray.c: In function '_move_ExtendableJaggedArrays_to_SVT':
ExtendableJaggedArray.c:129:25: warning: 'nzvals_p' may be used uninitialized [-Wmaybe-uninitialized]
  129 |                         free(nzvals_p);
      |                         ^~~~~~~~~~~~~~
ExtendableJaggedArray.c:111:22: note: 'nzvals_p' was declared here
  111 |                 int *nzvals_p, *nzoffs_p;
      |                      ^~~~~~~~
ExtendableJaggedArray.c:125:25: warning: 'nzoffs_p' may be used uninitialized [-Wmaybe-uninitialized]
  125 |                         free(nzoffs_p);
      |                         ^~~~~~~~~~~~~~
ExtendableJaggedArray.c:111:33: note: 'nzoffs_p' was declared here
  111 |                 int *nzvals_p, *nzoffs_p;
      |                                 ^~~~~~~~
gcc  -I"F:/biocbuild/bbs-3.22-bioc/R/include" -DNDEBUG  -I'F:/biocbuild/bbs-3.22-bioc/R/library/S4Vectors/include' -I'F:/biocbuild/bbs-3.22-bioc/R/library/IRanges/include' -I'F:/biocbuild/bbs-3.22-bioc/R/library/XVector/include'   -I"C:/rtools45/x86_64-w64-mingw32.static.posix/include"   -fopenmp   -O2 -Wall -std=gnu2x  -mfpmath=sse -msse2 -mstackrealign   -c IRanges_stubs.c -o IRanges_stubs.o
gcc  -I"F:/biocbuild/bbs-3.22-bioc/R/include" -DNDEBUG  -I'F:/biocbuild/bbs-3.22-bioc/R/library/S4Vectors/include' -I'F:/biocbuild/bbs-3.22-bioc/R/library/IRanges/include' -I'F:/biocbuild/bbs-3.22-bioc/R/library/XVector/include'   -I"C:/rtools45/x86_64-w64-mingw32.static.posix/include"   -fopenmp   -O2 -Wall -std=gnu2x  -mfpmath=sse -msse2 -mstackrealign   -c OPBufTree.c -o OPBufTree.o
OPBufTree.c: In function 'print_OPBuf':
OPBufTree.c:271:37: warning: format '%lu' expects argument of type 'long unsigned int', but argument 2 has type 'R_xlen_t' {aka 'long long int'} [-Wformat=]
  271 |                         Rprintf("%4lu", opbuf->xLoffs[k]);
      |                                  ~~~^   ~~~~~~~~~~~~~~~~
      |                                     |                |
      |                                     |                R_xlen_t {aka long long int}
      |                                     long unsigned int
      |                                  %4llu
gcc  -I"F:/biocbuild/bbs-3.22-bioc/R/include" -DNDEBUG  -I'F:/biocbuild/bbs-3.22-bioc/R/library/S4Vectors/include' -I'F:/biocbuild/bbs-3.22-bioc/R/library/IRanges/include' -I'F:/biocbuild/bbs-3.22-bioc/R/library/XVector/include'   -I"C:/rtools45/x86_64-w64-mingw32.static.posix/include"   -fopenmp   -O2 -Wall -std=gnu2x  -mfpmath=sse -msse2 -mstackrealign   -c R_init_SparseArray.c -o R_init_SparseArray.o
gcc  -I"F:/biocbuild/bbs-3.22-bioc/R/include" -DNDEBUG  -I'F:/biocbuild/bbs-3.22-bioc/R/library/S4Vectors/include' -I'F:/biocbuild/bbs-3.22-bioc/R/library/IRanges/include' -I'F:/biocbuild/bbs-3.22-bioc/R/library/XVector/include'   -I"C:/rtools45/x86_64-w64-mingw32.static.posix/include"   -fopenmp   -O2 -Wall -std=gnu2x  -mfpmath=sse -msse2 -mstackrealign   -c Rvector_summarization.c -o Rvector_summarization.o
Rvector_summarization.c:1370:12: warning: 'count_NA_list_elts' defined but not used [-Wunused-function]
 1370 | static int count_NA_list_elts(SEXP x)
      |            ^~~~~~~~~~~~~~~~~~
Rvector_summarization.c:1360:12: warning: 'any_NA_list_elt' defined but not used [-Wunused-function]
 1360 | static int any_NA_list_elt(SEXP x)
      |            ^~~~~~~~~~~~~~~
gcc  -I"F:/biocbuild/bbs-3.22-bioc/R/include" -DNDEBUG  -I'F:/biocbuild/bbs-3.22-bioc/R/library/S4Vectors/include' -I'F:/biocbuild/bbs-3.22-bioc/R/library/IRanges/include' -I'F:/biocbuild/bbs-3.22-bioc/R/library/XVector/include'   -I"C:/rtools45/x86_64-w64-mingw32.static.posix/include"   -fopenmp   -O2 -Wall -std=gnu2x  -mfpmath=sse -msse2 -mstackrealign   -c Rvector_utils.c -o Rvector_utils.o
gcc  -I"F:/biocbuild/bbs-3.22-bioc/R/include" -DNDEBUG  -I'F:/biocbuild/bbs-3.22-bioc/R/library/S4Vectors/include' -I'F:/biocbuild/bbs-3.22-bioc/R/library/IRanges/include' -I'F:/biocbuild/bbs-3.22-bioc/R/library/XVector/include'   -I"C:/rtools45/x86_64-w64-mingw32.static.posix/include"   -fopenmp   -O2 -Wall -std=gnu2x  -mfpmath=sse -msse2 -mstackrealign   -c S4Vectors_stubs.c -o S4Vectors_stubs.o
gcc  -I"F:/biocbuild/bbs-3.22-bioc/R/include" -DNDEBUG  -I'F:/biocbuild/bbs-3.22-bioc/R/library/S4Vectors/include' -I'F:/biocbuild/bbs-3.22-bioc/R/library/IRanges/include' -I'F:/biocbuild/bbs-3.22-bioc/R/library/XVector/include'   -I"C:/rtools45/x86_64-w64-mingw32.static.posix/include"   -fopenmp   -O2 -Wall -std=gnu2x  -mfpmath=sse -msse2 -mstackrealign   -c SBT_utils.c -o SBT_utils.o
gcc  -I"F:/biocbuild/bbs-3.22-bioc/R/include" -DNDEBUG  -I'F:/biocbuild/bbs-3.22-bioc/R/library/S4Vectors/include' -I'F:/biocbuild/bbs-3.22-bioc/R/library/IRanges/include' -I'F:/biocbuild/bbs-3.22-bioc/R/library/XVector/include'   -I"C:/rtools45/x86_64-w64-mingw32.static.posix/include"   -fopenmp   -O2 -Wall -std=gnu2x  -mfpmath=sse -msse2 -mstackrealign   -c SVT_SparseArray_class.c -o SVT_SparseArray_class.o
SVT_SparseArray_class.c: In function 'C_from_SVT_SparseMatrix_to_CsparseMatrix':
SVT_SparseArray_class.c:645:23: warning: format '%ld' expects argument of type 'long int', but argument 2 has type 'R_xlen_t' {aka 'long long int'} [-Wformat=]
  645 |                 error("SVT_SparseMatrix object contains too many nonzero "
      |                       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  646 |                       "values (%ld) to \"fit\" in a CsparseMatrix derivative",
  647 |                       x_nzcount);
      |                       ~~~~~~~~~
      |                       |
      |                       R_xlen_t {aka long long int}
SVT_SparseArray_class.c:646:34: note: format string is defined here
  646 |                       "values (%ld) to \"fit\" in a CsparseMatrix derivative",
      |                                ~~^
      |                                  |
      |                                  long int
      |                                %lld
gcc  -I"F:/biocbuild/bbs-3.22-bioc/R/include" -DNDEBUG  -I'F:/biocbuild/bbs-3.22-bioc/R/library/S4Vectors/include' -I'F:/biocbuild/bbs-3.22-bioc/R/library/IRanges/include' -I'F:/biocbuild/bbs-3.22-bioc/R/library/XVector/include'   -I"C:/rtools45/x86_64-w64-mingw32.static.posix/include"   -fopenmp   -O2 -Wall -std=gnu2x  -mfpmath=sse -msse2 -mstackrealign   -c SparseArray_Arith_methods.c -o SparseArray_Arith_methods.o
gcc  -I"F:/biocbuild/bbs-3.22-bioc/R/include" -DNDEBUG  -I'F:/biocbuild/bbs-3.22-bioc/R/library/S4Vectors/include' -I'F:/biocbuild/bbs-3.22-bioc/R/library/IRanges/include' -I'F:/biocbuild/bbs-3.22-bioc/R/library/XVector/include'   -I"C:/rtools45/x86_64-w64-mingw32.static.posix/include"   -fopenmp   -O2 -Wall -std=gnu2x  -mfpmath=sse -msse2 -mstackrealign   -c SparseArray_Compare_methods.c -o SparseArray_Compare_methods.o
gcc  -I"F:/biocbuild/bbs-3.22-bioc/R/include" -DNDEBUG  -I'F:/biocbuild/bbs-3.22-bioc/R/library/S4Vectors/include' -I'F:/biocbuild/bbs-3.22-bioc/R/library/IRanges/include' -I'F:/biocbuild/bbs-3.22-bioc/R/library/XVector/include'   -I"C:/rtools45/x86_64-w64-mingw32.static.posix/include"   -fopenmp   -O2 -Wall -std=gnu2x  -mfpmath=sse -msse2 -mstackrealign   -c SparseArray_Complex_methods.c -o SparseArray_Complex_methods.o
gcc  -I"F:/biocbuild/bbs-3.22-bioc/R/include" -DNDEBUG  -I'F:/biocbuild/bbs-3.22-bioc/R/library/S4Vectors/include' -I'F:/biocbuild/bbs-3.22-bioc/R/library/IRanges/include' -I'F:/biocbuild/bbs-3.22-bioc/R/library/XVector/include'   -I"C:/rtools45/x86_64-w64-mingw32.static.posix/include"   -fopenmp   -O2 -Wall -std=gnu2x  -mfpmath=sse -msse2 -mstackrealign   -c SparseArray_Logic_methods.c -o SparseArray_Logic_methods.o
gcc  -I"F:/biocbuild/bbs-3.22-bioc/R/include" -DNDEBUG  -I'F:/biocbuild/bbs-3.22-bioc/R/library/S4Vectors/include' -I'F:/biocbuild/bbs-3.22-bioc/R/library/IRanges/include' -I'F:/biocbuild/bbs-3.22-bioc/R/library/XVector/include'   -I"C:/rtools45/x86_64-w64-mingw32.static.posix/include"   -fopenmp   -O2 -Wall -std=gnu2x  -mfpmath=sse -msse2 -mstackrealign   -c SparseArray_Math_methods.c -o SparseArray_Math_methods.o
gcc  -I"F:/biocbuild/bbs-3.22-bioc/R/include" -DNDEBUG  -I'F:/biocbuild/bbs-3.22-bioc/R/library/S4Vectors/include' -I'F:/biocbuild/bbs-3.22-bioc/R/library/IRanges/include' -I'F:/biocbuild/bbs-3.22-bioc/R/library/XVector/include'   -I"C:/rtools45/x86_64-w64-mingw32.static.posix/include"   -fopenmp   -O2 -Wall -std=gnu2x  -mfpmath=sse -msse2 -mstackrealign   -c SparseArray_abind.c -o SparseArray_abind.o
gcc  -I"F:/biocbuild/bbs-3.22-bioc/R/include" -DNDEBUG  -I'F:/biocbuild/bbs-3.22-bioc/R/library/S4Vectors/include' -I'F:/biocbuild/bbs-3.22-bioc/R/library/IRanges/include' -I'F:/biocbuild/bbs-3.22-bioc/R/library/XVector/include'   -I"C:/rtools45/x86_64-w64-mingw32.static.posix/include"   -fopenmp   -O2 -Wall -std=gnu2x  -mfpmath=sse -msse2 -mstackrealign   -c SparseArray_aperm.c -o SparseArray_aperm.o
gcc  -I"F:/biocbuild/bbs-3.22-bioc/R/include" -DNDEBUG  -I'F:/biocbuild/bbs-3.22-bioc/R/library/S4Vectors/include' -I'F:/biocbuild/bbs-3.22-bioc/R/library/IRanges/include' -I'F:/biocbuild/bbs-3.22-bioc/R/library/XVector/include'   -I"C:/rtools45/x86_64-w64-mingw32.static.posix/include"   -fopenmp   -O2 -Wall -std=gnu2x  -mfpmath=sse -msse2 -mstackrealign   -c SparseArray_dim_tuning.c -o SparseArray_dim_tuning.o
gcc  -I"F:/biocbuild/bbs-3.22-bioc/R/include" -DNDEBUG  -I'F:/biocbuild/bbs-3.22-bioc/R/library/S4Vectors/include' -I'F:/biocbuild/bbs-3.22-bioc/R/library/IRanges/include' -I'F:/biocbuild/bbs-3.22-bioc/R/library/XVector/include'   -I"C:/rtools45/x86_64-w64-mingw32.static.posix/include"   -fopenmp   -O2 -Wall -std=gnu2x  -mfpmath=sse -msse2 -mstackrealign   -c SparseArray_matrixStats.c -o SparseArray_matrixStats.o
gcc  -I"F:/biocbuild/bbs-3.22-bioc/R/include" -DNDEBUG  -I'F:/biocbuild/bbs-3.22-bioc/R/library/S4Vectors/include' -I'F:/biocbuild/bbs-3.22-bioc/R/library/IRanges/include' -I'F:/biocbuild/bbs-3.22-bioc/R/library/XVector/include'   -I"C:/rtools45/x86_64-w64-mingw32.static.posix/include"   -fopenmp   -O2 -Wall -std=gnu2x  -mfpmath=sse -msse2 -mstackrealign   -c SparseArray_misc_methods.c -o SparseArray_misc_methods.o
gcc  -I"F:/biocbuild/bbs-3.22-bioc/R/include" -DNDEBUG  -I'F:/biocbuild/bbs-3.22-bioc/R/library/S4Vectors/include' -I'F:/biocbuild/bbs-3.22-bioc/R/library/IRanges/include' -I'F:/biocbuild/bbs-3.22-bioc/R/library/XVector/include'   -I"C:/rtools45/x86_64-w64-mingw32.static.posix/include"   -fopenmp   -O2 -Wall -std=gnu2x  -mfpmath=sse -msse2 -mstackrealign   -c SparseArray_subassignment.c -o SparseArray_subassignment.o
gcc  -I"F:/biocbuild/bbs-3.22-bioc/R/include" -DNDEBUG  -I'F:/biocbuild/bbs-3.22-bioc/R/library/S4Vectors/include' -I'F:/biocbuild/bbs-3.22-bioc/R/library/IRanges/include' -I'F:/biocbuild/bbs-3.22-bioc/R/library/XVector/include'   -I"C:/rtools45/x86_64-w64-mingw32.static.posix/include"   -fopenmp   -O2 -Wall -std=gnu2x  -mfpmath=sse -msse2 -mstackrealign   -c SparseArray_subassignment_OLD.c -o SparseArray_subassignment_OLD.o
gcc  -I"F:/biocbuild/bbs-3.22-bioc/R/include" -DNDEBUG  -I'F:/biocbuild/bbs-3.22-bioc/R/library/S4Vectors/include' -I'F:/biocbuild/bbs-3.22-bioc/R/library/IRanges/include' -I'F:/biocbuild/bbs-3.22-bioc/R/library/XVector/include'   -I"C:/rtools45/x86_64-w64-mingw32.static.posix/include"   -fopenmp   -O2 -Wall -std=gnu2x  -mfpmath=sse -msse2 -mstackrealign   -c SparseArray_subsetting.c -o SparseArray_subsetting.o
gcc  -I"F:/biocbuild/bbs-3.22-bioc/R/include" -DNDEBUG  -I'F:/biocbuild/bbs-3.22-bioc/R/library/S4Vectors/include' -I'F:/biocbuild/bbs-3.22-bioc/R/library/IRanges/include' -I'F:/biocbuild/bbs-3.22-bioc/R/library/XVector/include'   -I"C:/rtools45/x86_64-w64-mingw32.static.posix/include"   -fopenmp   -O2 -Wall -std=gnu2x  -mfpmath=sse -msse2 -mstackrealign   -c SparseArray_summarization.c -o SparseArray_summarization.o
gcc  -I"F:/biocbuild/bbs-3.22-bioc/R/include" -DNDEBUG  -I'F:/biocbuild/bbs-3.22-bioc/R/library/S4Vectors/include' -I'F:/biocbuild/bbs-3.22-bioc/R/library/IRanges/include' -I'F:/biocbuild/bbs-3.22-bioc/R/library/XVector/include'   -I"C:/rtools45/x86_64-w64-mingw32.static.posix/include"   -fopenmp   -O2 -Wall -std=gnu2x  -mfpmath=sse -msse2 -mstackrealign   -c SparseMatrix_mult.c -o SparseMatrix_mult.o
SparseMatrix_mult.c:346:13: warning: 'crossprod2_doublemat_doubleSV' defined but not used [-Wunused-function]
  346 | static void crossprod2_doublemat_doubleSV(
      |             ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
SparseMatrix_mult.c:306:13: warning: 'crossprod2_doubleSV_doublemat' defined but not used [-Wunused-function]
  306 | static void crossprod2_doubleSV_doublemat(
      |             ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
gcc  -I"F:/biocbuild/bbs-3.22-bioc/R/include" -DNDEBUG  -I'F:/biocbuild/bbs-3.22-bioc/R/library/S4Vectors/include' -I'F:/biocbuild/bbs-3.22-bioc/R/library/IRanges/include' -I'F:/biocbuild/bbs-3.22-bioc/R/library/XVector/include'   -I"C:/rtools45/x86_64-w64-mingw32.static.posix/include"   -fopenmp   -O2 -Wall -std=gnu2x  -mfpmath=sse -msse2 -mstackrealign   -c SparseVec.c -o SparseVec.o
gcc  -I"F:/biocbuild/bbs-3.22-bioc/R/include" -DNDEBUG  -I'F:/biocbuild/bbs-3.22-bioc/R/library/S4Vectors/include' -I'F:/biocbuild/bbs-3.22-bioc/R/library/IRanges/include' -I'F:/biocbuild/bbs-3.22-bioc/R/library/XVector/include'   -I"C:/rtools45/x86_64-w64-mingw32.static.posix/include"   -fopenmp   -O2 -Wall -std=gnu2x  -mfpmath=sse -msse2 -mstackrealign   -c SparseVec_Arith.c -o SparseVec_Arith.o
gcc  -I"F:/biocbuild/bbs-3.22-bioc/R/include" -DNDEBUG  -I'F:/biocbuild/bbs-3.22-bioc/R/library/S4Vectors/include' -I'F:/biocbuild/bbs-3.22-bioc/R/library/IRanges/include' -I'F:/biocbuild/bbs-3.22-bioc/R/library/XVector/include'   -I"C:/rtools45/x86_64-w64-mingw32.static.posix/include"   -fopenmp   -O2 -Wall -std=gnu2x  -mfpmath=sse -msse2 -mstackrealign   -c SparseVec_Compare.c -o SparseVec_Compare.o
gcc  -I"F:/biocbuild/bbs-3.22-bioc/R/include" -DNDEBUG  -I'F:/biocbuild/bbs-3.22-bioc/R/library/S4Vectors/include' -I'F:/biocbuild/bbs-3.22-bioc/R/library/IRanges/include' -I'F:/biocbuild/bbs-3.22-bioc/R/library/XVector/include'   -I"C:/rtools45/x86_64-w64-mingw32.static.posix/include"   -fopenmp   -O2 -Wall -std=gnu2x  -mfpmath=sse -msse2 -mstackrealign   -c SparseVec_Logic.c -o SparseVec_Logic.o
gcc  -I"F:/biocbuild/bbs-3.22-bioc/R/include" -DNDEBUG  -I'F:/biocbuild/bbs-3.22-bioc/R/library/S4Vectors/include' -I'F:/biocbuild/bbs-3.22-bioc/R/library/IRanges/include' -I'F:/biocbuild/bbs-3.22-bioc/R/library/XVector/include'   -I"C:/rtools45/x86_64-w64-mingw32.static.posix/include"   -fopenmp   -O2 -Wall -std=gnu2x  -mfpmath=sse -msse2 -mstackrealign   -c SparseVec_Math.c -o SparseVec_Math.o
gcc  -I"F:/biocbuild/bbs-3.22-bioc/R/include" -DNDEBUG  -I'F:/biocbuild/bbs-3.22-bioc/R/library/S4Vectors/include' -I'F:/biocbuild/bbs-3.22-bioc/R/library/IRanges/include' -I'F:/biocbuild/bbs-3.22-bioc/R/library/XVector/include'   -I"C:/rtools45/x86_64-w64-mingw32.static.posix/include"   -fopenmp   -O2 -Wall -std=gnu2x  -mfpmath=sse -msse2 -mstackrealign   -c SparseVec_dotprod.c -o SparseVec_dotprod.o
gcc  -I"F:/biocbuild/bbs-3.22-bioc/R/include" -DNDEBUG  -I'F:/biocbuild/bbs-3.22-bioc/R/library/S4Vectors/include' -I'F:/biocbuild/bbs-3.22-bioc/R/library/IRanges/include' -I'F:/biocbuild/bbs-3.22-bioc/R/library/XVector/include'   -I"C:/rtools45/x86_64-w64-mingw32.static.posix/include"   -fopenmp   -O2 -Wall -std=gnu2x  -mfpmath=sse -msse2 -mstackrealign   -c XVector_stubs.c -o XVector_stubs.o
gcc  -I"F:/biocbuild/bbs-3.22-bioc/R/include" -DNDEBUG  -I'F:/biocbuild/bbs-3.22-bioc/R/library/S4Vectors/include' -I'F:/biocbuild/bbs-3.22-bioc/R/library/IRanges/include' -I'F:/biocbuild/bbs-3.22-bioc/R/library/XVector/include'   -I"C:/rtools45/x86_64-w64-mingw32.static.posix/include"   -fopenmp   -O2 -Wall -std=gnu2x  -mfpmath=sse -msse2 -mstackrealign   -c argcheck_utils.c -o argcheck_utils.o
gcc  -I"F:/biocbuild/bbs-3.22-bioc/R/include" -DNDEBUG  -I'F:/biocbuild/bbs-3.22-bioc/R/library/S4Vectors/include' -I'F:/biocbuild/bbs-3.22-bioc/R/library/IRanges/include' -I'F:/biocbuild/bbs-3.22-bioc/R/library/XVector/include'   -I"C:/rtools45/x86_64-w64-mingw32.static.posix/include"   -fopenmp   -O2 -Wall -std=gnu2x  -mfpmath=sse -msse2 -mstackrealign   -c coerceVector2.c -o coerceVector2.o
gcc  -I"F:/biocbuild/bbs-3.22-bioc/R/include" -DNDEBUG  -I'F:/biocbuild/bbs-3.22-bioc/R/library/S4Vectors/include' -I'F:/biocbuild/bbs-3.22-bioc/R/library/IRanges/include' -I'F:/biocbuild/bbs-3.22-bioc/R/library/XVector/include'   -I"C:/rtools45/x86_64-w64-mingw32.static.posix/include"   -fopenmp   -O2 -Wall -std=gnu2x  -mfpmath=sse -msse2 -mstackrealign   -c leaf_utils.c -o leaf_utils.o
gcc  -I"F:/biocbuild/bbs-3.22-bioc/R/include" -DNDEBUG  -I'F:/biocbuild/bbs-3.22-bioc/R/library/S4Vectors/include' -I'F:/biocbuild/bbs-3.22-bioc/R/library/IRanges/include' -I'F:/biocbuild/bbs-3.22-bioc/R/library/XVector/include'   -I"C:/rtools45/x86_64-w64-mingw32.static.posix/include"   -fopenmp   -O2 -Wall -std=gnu2x  -mfpmath=sse -msse2 -mstackrealign   -c randomSparseArray.c -o randomSparseArray.o
gcc  -I"F:/biocbuild/bbs-3.22-bioc/R/include" -DNDEBUG  -I'F:/biocbuild/bbs-3.22-bioc/R/library/S4Vectors/include' -I'F:/biocbuild/bbs-3.22-bioc/R/library/IRanges/include' -I'F:/biocbuild/bbs-3.22-bioc/R/library/XVector/include'   -I"C:/rtools45/x86_64-w64-mingw32.static.posix/include"   -fopenmp   -O2 -Wall -std=gnu2x  -mfpmath=sse -msse2 -mstackrealign   -c readSparseCSV.c -o readSparseCSV.o
gcc  -I"F:/biocbuild/bbs-3.22-bioc/R/include" -DNDEBUG  -I'F:/biocbuild/bbs-3.22-bioc/R/library/S4Vectors/include' -I'F:/biocbuild/bbs-3.22-bioc/R/library/IRanges/include' -I'F:/biocbuild/bbs-3.22-bioc/R/library/XVector/include'   -I"C:/rtools45/x86_64-w64-mingw32.static.posix/include"   -fopenmp   -O2 -Wall -std=gnu2x  -mfpmath=sse -msse2 -mstackrealign   -c rowsum_methods.c -o rowsum_methods.o
gcc  -I"F:/biocbuild/bbs-3.22-bioc/R/include" -DNDEBUG  -I'F:/biocbuild/bbs-3.22-bioc/R/library/S4Vectors/include' -I'F:/biocbuild/bbs-3.22-bioc/R/library/IRanges/include' -I'F:/biocbuild/bbs-3.22-bioc/R/library/XVector/include'   -I"C:/rtools45/x86_64-w64-mingw32.static.posix/include"   -fopenmp   -O2 -Wall -std=gnu2x  -mfpmath=sse -msse2 -mstackrealign   -c sparseMatrix_utils.c -o sparseMatrix_utils.o
gcc  -I"F:/biocbuild/bbs-3.22-bioc/R/include" -DNDEBUG  -I'F:/biocbuild/bbs-3.22-bioc/R/library/S4Vectors/include' -I'F:/biocbuild/bbs-3.22-bioc/R/library/IRanges/include' -I'F:/biocbuild/bbs-3.22-bioc/R/library/XVector/include'   -I"C:/rtools45/x86_64-w64-mingw32.static.posix/include"   -fopenmp   -O2 -Wall -std=gnu2x  -mfpmath=sse -msse2 -mstackrealign   -c test.c -o test.o
gcc  -I"F:/biocbuild/bbs-3.22-bioc/R/include" -DNDEBUG  -I'F:/biocbuild/bbs-3.22-bioc/R/library/S4Vectors/include' -I'F:/biocbuild/bbs-3.22-bioc/R/library/IRanges/include' -I'F:/biocbuild/bbs-3.22-bioc/R/library/XVector/include'   -I"C:/rtools45/x86_64-w64-mingw32.static.posix/include"   -fopenmp   -O2 -Wall -std=gnu2x  -mfpmath=sse -msse2 -mstackrealign   -c thread_control.c -o thread_control.o
gcc -shared -s -static-libgcc -o SparseArray.dll tmp.def ExtendableJaggedArray.o IRanges_stubs.o OPBufTree.o R_init_SparseArray.o Rvector_summarization.o Rvector_utils.o S4Vectors_stubs.o SBT_utils.o SVT_SparseArray_class.o SparseArray_Arith_methods.o SparseArray_Compare_methods.o SparseArray_Complex_methods.o SparseArray_Logic_methods.o SparseArray_Math_methods.o SparseArray_abind.o SparseArray_aperm.o SparseArray_dim_tuning.o SparseArray_matrixStats.o SparseArray_misc_methods.o SparseArray_subassignment.o SparseArray_subassignment_OLD.o SparseArray_subsetting.o SparseArray_summarization.o SparseMatrix_mult.o SparseVec.o SparseVec_Arith.o SparseVec_Compare.o SparseVec_Logic.o SparseVec_Math.o SparseVec_dotprod.o XVector_stubs.o argcheck_utils.o coerceVector2.o leaf_utils.o randomSparseArray.o readSparseCSV.o rowsum_methods.o sparseMatrix_utils.o test.o thread_control.o -fopenmp -LC:/rtools45/x86_64-w64-mingw32.static.posix/lib/x64 -LC:/rtools45/x86_64-w64-mingw32.static.posix/lib -LF:/biocbuild/bbs-3.22-bioc/R/bin/x64 -lR
installing to F:/biocbuild/bbs-3.22-bioc/meat/SparseArray.buildbin-libdir/00LOCK-SparseArray/00new/SparseArray/libs/x64
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* MD5 sums
packaged installation of 'SparseArray' as SparseArray_1.9.1.zip
* DONE (SparseArray)