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This page was generated on 2025-11-21 11:39 -0500 (Fri, 21 Nov 2025).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 24.04.3 LTS)x86_64R Under development (unstable) (2025-10-20 r88955) -- "Unsuffered Consequences" 4829
lconwaymacOS 12.7.6 Montereyx86_64R Under development (unstable) (2025-10-21 r88958) -- "Unsuffered Consequences" 4602
kjohnson3macOS 13.7.7 Venturaarm64R Under development (unstable) (2025-11-04 r88984) -- "Unsuffered Consequences" 4566
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 1712/2327HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
Rcpi 1.47.0  (landing page)
Nan Xiao
Snapshot Date: 2025-11-20 13:40 -0500 (Thu, 20 Nov 2025)
git_url: https://git.bioconductor.org/packages/Rcpi
git_branch: devel
git_last_commit: d010cbe
git_last_commit_date: 2025-10-29 10:18:37 -0500 (Wed, 29 Oct 2025)
nebbiolo1Linux (Ubuntu 24.04.3 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
lconwaymacOS 12.7.6 Monterey / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published
kjohnson3macOS 13.7.7 Ventura / arm64  OK    OK    OK    OK  UNNEEDED, same version is already published


CHECK results for Rcpi on lconway

To the developers/maintainers of the Rcpi package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/Rcpi.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: Rcpi
Version: 1.47.0
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:Rcpi.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings Rcpi_1.47.0.tar.gz
StartedAt: 2025-11-20 23:32:12 -0500 (Thu, 20 Nov 2025)
EndedAt: 2025-11-20 23:34:47 -0500 (Thu, 20 Nov 2025)
EllapsedTime: 154.7 seconds
RetCode: 0
Status:   OK  
CheckDir: Rcpi.Rcheck
Warnings: 0

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:Rcpi.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings Rcpi_1.47.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory ‘/Users/biocbuild/bbs-3.23-bioc/meat/Rcpi.Rcheck’
* using R Under development (unstable) (2025-10-21 r88958)
* using platform: x86_64-apple-darwin20
* R was compiled by
    Apple clang version 14.0.0 (clang-1400.0.29.202)
    GNU Fortran (GCC) 14.2.0
* running under: macOS Ventura 13.7.8
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘Rcpi/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘Rcpi’ version ‘1.47.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘Rcpi’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘testthat.R’
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK


Installation output

Rcpi.Rcheck/00install.out

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL Rcpi
###
##############################################################################
##############################################################################


* installing to library ‘/Library/Frameworks/R.framework/Versions/4.6-x86_64/Resources/library’
* installing *source* package ‘Rcpi’ ...
** this is package ‘Rcpi’ version ‘1.47.0’
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (Rcpi)

Tests output

Rcpi.Rcheck/tests/testthat.Rout


R Under development (unstable) (2025-10-21 r88958) -- "Unsuffered Consequences"
Copyright (C) 2025 The R Foundation for Statistical Computing
Platform: x86_64-apple-darwin20

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> library(testthat)
> library(Rcpi)

> 
> test_check("Rcpi")
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 22 ]
> 
> proc.time()
   user  system elapsed 
  7.390   0.766   7.347 

Example timings

Rcpi.Rcheck/Rcpi-Ex.timings

nameusersystemelapsed
AA2DACOR0.0020.0020.005
AA3DMoRSE0.0010.0030.007
AAACF0.0010.0030.004
AABLOSUM1000.0010.0030.005
AABLOSUM450.0010.0020.003
AABLOSUM500.0020.0020.004
AABLOSUM620.0010.0020.003
AABLOSUM800.0010.0020.003
AABurden0.0010.0020.003
AACPSA0.0010.0020.003
AAConn0.0010.0010.003
AAConst0.0010.0010.003
AADescAll0.0010.0020.003
AAEdgeAdj0.0010.0020.003
AAEigIdx0.0010.0020.004
AAFGC0.0010.0010.003
AAGETAWAY0.0010.0020.005
AAGeom0.0010.0020.003
AAInfo0.0010.0020.003
AAMOE2D0.0010.0020.003
AAMOE3D0.0010.0020.003
AAMetaInfo0.0010.0020.003
AAMolProp0.0010.0020.003
AAPAM1200.0010.0020.004
AAPAM2500.0010.0020.003
AAPAM300.0010.0020.003
AAPAM400.0010.0020.003
AAPAM700.0010.0020.003
AARDF0.0010.0020.003
AARandic0.0000.0010.003
AATopo0.0010.0020.003
AATopoChg0.0010.0020.003
AAWHIM0.0010.0020.008
AAWalk0.0010.0020.003
AAindex0.0010.0020.003
OptAA3d000
acc0.0270.0080.035
calcDrugFPSim000
calcDrugMCSSim0.0050.0050.011
calcParProtGOSim0.0000.0010.000
calcParProtSeqSim0.0070.0050.013
calcTwoProtGOSim0.0000.0010.001
calcTwoProtSeqSim0.0020.0010.003
checkProt0.0010.0010.002
convMolFormat0.0010.0010.002
extractDrugAIO0.0000.0010.002
extractDrugALOGP0.0010.0000.001
extractDrugAminoAcidCount0.0010.0000.002
extractDrugApol0.0010.0000.001
extractDrugAromaticAtomsCount0.0010.0000.002
extractDrugAromaticBondsCount0.0000.0000.001
extractDrugAtomCount0.0000.0000.001
extractDrugAutocorrelationCharge0.0010.0000.002
extractDrugAutocorrelationMass0.0010.0000.001
extractDrugAutocorrelationPolarizability0.0010.0000.001
extractDrugBCUT0.0010.0000.002
extractDrugBPol0.0010.0010.001
extractDrugBondCount0.0010.0010.002
extractDrugCPSA0.0010.0010.001
extractDrugCarbonTypes0.0010.0010.002
extractDrugChiChain0.0010.0000.002
extractDrugChiCluster0.0010.0000.002
extractDrugChiPath0.0010.0000.001
extractDrugChiPathCluster0.0000.0010.001
extractDrugDescOB0.0080.0060.016
extractDrugECI0.0010.0010.002
extractDrugEstate0.0010.0000.002
extractDrugEstateComplete0.0010.0010.002
extractDrugExtended0.0010.0010.002
extractDrugExtendedComplete0.0010.0010.001
extractDrugFMF0.0010.0010.002
extractDrugFragmentComplexity0.0010.0010.002
extractDrugGraph0.0010.0000.001
extractDrugGraphComplete0.0000.0000.001
extractDrugGravitationalIndex0.0010.0000.002
extractDrugHBondAcceptorCount0.0010.0000.001
extractDrugHBondDonorCount0.0010.0010.002
extractDrugHybridization0.0010.0010.001
extractDrugHybridizationComplete0.0010.0010.001
extractDrugHybridizationRatio0.0010.0010.001
extractDrugIPMolecularLearning0.0010.0010.002
extractDrugKR0.0010.0010.001
extractDrugKRComplete0.0010.0000.002
extractDrugKappaShapeIndices0.0010.0000.001
extractDrugKierHallSmarts0.0010.0000.001
extractDrugLargestChain0.0010.0000.001
extractDrugLargestPiSystem0.0010.0010.002
extractDrugLengthOverBreadth0.0000.0010.001
extractDrugLongestAliphaticChain0.0010.0010.002
extractDrugMACCS0.0010.0010.001
extractDrugMACCSComplete0.0010.0010.002
extractDrugMDE0.0010.0010.001
extractDrugMannholdLogP0.0010.0000.002
extractDrugMomentOfInertia0.0000.0000.002
extractDrugOBFP20.0160.0080.025
extractDrugOBFP30.0080.0050.014
extractDrugOBFP40.0930.0090.110
extractDrugOBMACCS0.0090.0040.014
extractDrugPetitjeanNumber0.0010.0000.001
extractDrugPetitjeanShapeIndex0.0010.0000.001
extractDrugPubChem0.0010.0010.002
extractDrugPubChemComplete0.0010.0010.002
extractDrugRotatableBondsCount0.0010.0010.002
extractDrugRuleOfFive0.0010.0000.002
extractDrugShortestPath0.0010.0010.001
extractDrugShortestPathComplete0.0000.0010.002
extractDrugStandard0.0010.0010.002
extractDrugStandardComplete0.0010.0000.002
extractDrugTPSA0.0010.0010.002
extractDrugVABC0.0000.0000.001
extractDrugVAdjMa0.0010.0010.002
extractDrugWHIM0.0010.0010.002
extractDrugWeight0.0010.0010.001
extractDrugWeightedPath0.0010.0000.001
extractDrugWienerNumbers0.0000.0000.001
extractDrugXLogP0.0010.0000.002
extractDrugZagrebIndex0.0000.0000.001
extractPCMBLOSUM0.0110.0030.014
extractPCMDescScales0.0140.0010.016
extractPCMFAScales0.0320.0060.039
extractPCMMDSScales0.0090.0020.013
extractPCMPropScales0.0100.0010.012
extractPCMScales0.0180.0040.030
extractProtAAC0.0030.0010.004
extractProtAPAAC0.8620.0270.906
extractProtCTDC0.0020.0010.003
extractProtCTDD0.0040.0020.007
extractProtCTDT0.0050.0010.009
extractProtCTriad0.1090.0140.125
extractProtDC0.0040.0070.011
extractProtGeary0.1270.0130.149
extractProtMoran0.1260.0110.139
extractProtMoreauBroto0.1370.0120.153
extractProtPAAC0.4200.0090.434
extractProtPSSM0.0020.0010.003
extractProtPSSMAcc0.0020.0010.002
extractProtPSSMFeature0.0010.0000.002
extractProtQSO0.7620.0210.796
extractProtSOCN0.7110.0140.734
extractProtTC0.0330.0730.108
getCPI0.0030.0010.004
getDrug000
getFASTAFromKEGG0.0010.0000.000
getFASTAFromUniProt0.0000.0010.000
getMolFromCAS000
getMolFromChEMBL0.0000.0000.001
getMolFromDrugBank000
getMolFromKEGG000
getMolFromPubChem000
getPDBFromRCSBPDB000
getPPI0.0030.0020.005
getProt000
getSeqFromKEGG000
getSeqFromRCSBPDB0.0000.0000.001
getSeqFromUniProt000
getSmiFromChEMBL000
getSmiFromDrugBank000
getSmiFromKEGG000
getSmiFromPubChem000
readFASTA0.0020.0010.003
readMolFromSDF0.0030.0020.005
readMolFromSmi0.0010.0010.002
readPDB0.7460.0110.773
searchDrug0.0020.0010.003
segProt0.0020.0010.004