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This page was generated on 2026-05-19 12:55 -0400 (Tue, 19 May 2026).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 24.04.4 LTS)x86_644.6.0 RC (2026-04-17 r89917) -- "Because it was There" 4898
kjohnson3macOS 13.7.7 Venturaarm644.6.0 Patched (2026-05-01 r89994) -- "Because it was There" 4617
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 1748/2377HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
Rcpi 1.49.0  (landing page)
Nan Xiao
Snapshot Date: 2026-05-18 13:45 -0400 (Mon, 18 May 2026)
git_url: https://git.bioconductor.org/packages/Rcpi
git_branch: devel
git_last_commit: afbe65a
git_last_commit_date: 2026-04-28 08:38:50 -0400 (Tue, 28 Apr 2026)
nebbiolo2Linux (Ubuntu 24.04.4 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
kjohnson3macOS 13.7.7 Ventura / arm64  OK    OK    OK  YES
See other builds for Rcpi in R Universe.


CHECK results for Rcpi on kjohnson3

To the developers/maintainers of the Rcpi package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/Rcpi.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: Rcpi
Version: 1.49.0
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:Rcpi.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings Rcpi_1.49.0.tar.gz
StartedAt: 2026-05-18 23:23:47 -0400 (Mon, 18 May 2026)
EndedAt: 2026-05-18 23:24:37 -0400 (Mon, 18 May 2026)
EllapsedTime: 49.7 seconds
RetCode: 0
Status:   OK  
CheckDir: Rcpi.Rcheck
Warnings: 0

Command output

##############################################################################
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###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:Rcpi.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings Rcpi_1.49.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory ‘/Users/biocbuild/bbs-3.24-bioc/meat/Rcpi.Rcheck’
* using R version 4.6.0 Patched (2026-05-01 r89994)
* using platform: aarch64-apple-darwin23
* R was compiled by
    Apple clang version 17.0.0 (clang-1700.3.19.1)
    GNU Fortran (GCC) 14.2.0
* running under: macOS Tahoe 26.3.1
* using session charset: UTF-8
* current time: 2026-05-19 03:23:48 UTC
* using option ‘--no-vignettes’
* checking for file ‘Rcpi/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘Rcpi’ version ‘1.49.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘Rcpi’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘testthat.R’
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK


Installation output

Rcpi.Rcheck/00install.out

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL Rcpi
###
##############################################################################
##############################################################################


* installing to library ‘/Library/Frameworks/R.framework/Versions/4.6/Resources/library’
* installing *source* package ‘Rcpi’ ...
** this is package ‘Rcpi’ version ‘1.49.0’
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (Rcpi)

Tests output

Rcpi.Rcheck/tests/testthat.Rout


R version 4.6.0 Patched (2026-05-01 r89994) -- "Because it was There"
Copyright (C) 2026 The R Foundation for Statistical Computing
Platform: aarch64-apple-darwin23

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> library(testthat)
> library(Rcpi)

> 
> test_check("Rcpi")
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 22 ]
> 
> proc.time()
   user  system elapsed 
  2.412   0.249   2.234 

Example timings

Rcpi.Rcheck/Rcpi-Ex.timings

nameusersystemelapsed
AA2DACOR0.0010.0010.001
AA3DMoRSE0.0010.0010.001
AAACF0.0010.0010.000
AABLOSUM100000
AABLOSUM45000
AABLOSUM500.0010.0000.001
AABLOSUM620.0000.0000.001
AABLOSUM800.0000.0010.001
AABurden0.0010.0000.001
AACPSA0.0000.0010.001
AAConn0.0000.0000.001
AAConst000
AADescAll0.0000.0010.001
AAEdgeAdj000
AAEigIdx0.0000.0000.001
AAFGC0.0000.0010.001
AAGETAWAY0.0000.0000.001
AAGeom000
AAInfo0.0000.0000.001
AAMOE2D0.0000.0000.001
AAMOE3D0.0000.0010.001
AAMetaInfo000
AAMolProp0.0000.0010.000
AAPAM1200.0000.0010.000
AAPAM2500.0010.0000.000
AAPAM300.0000.0010.001
AAPAM400.0000.0000.001
AAPAM700.0010.0010.001
AARDF0.0000.0000.001
AARandic0.0000.0000.001
AATopo0.0010.0000.001
AATopoChg0.0000.0000.001
AAWHIM000
AAWalk0.0010.0010.001
AAindex0.0000.0000.001
OptAA3d000
acc0.0090.0030.012
calcDrugFPSim0.0000.0000.001
calcDrugMCSSim0.0010.0010.002
calcParProtGOSim000
calcParProtSeqSim0.0020.0010.004
calcTwoProtGOSim000
calcTwoProtSeqSim0.0010.0000.001
checkProt000
convMolFormat000
extractDrugAIO0.0000.0010.001
extractDrugALOGP000
extractDrugAminoAcidCount000
extractDrugApol000
extractDrugAromaticAtomsCount0.0000.0010.000
extractDrugAromaticBondsCount0.0000.0000.001
extractDrugAtomCount000
extractDrugAutocorrelationCharge0.0010.0010.000
extractDrugAutocorrelationMass0.0000.0000.001
extractDrugAutocorrelationPolarizability000
extractDrugBCUT0.0010.0010.000
extractDrugBPol0.0000.0000.001
extractDrugBondCount000
extractDrugCPSA0.0010.0000.000
extractDrugCarbonTypes0.0000.0000.001
extractDrugChiChain000
extractDrugChiCluster0.0010.0010.001
extractDrugChiPath000
extractDrugChiPathCluster000
extractDrugDescOB0.0020.0000.004
extractDrugECI0.0010.0000.000
extractDrugEstate000
extractDrugEstateComplete0.0000.0010.001
extractDrugExtended0.0010.0000.000
extractDrugExtendedComplete000
extractDrugFMF0.0000.0010.001
extractDrugFragmentComplexity0.0010.0000.001
extractDrugGraph000
extractDrugGraphComplete000
extractDrugGravitationalIndex0.0010.0000.001
extractDrugHBondAcceptorCount000
extractDrugHBondDonorCount0.0000.0010.001
extractDrugHybridization000
extractDrugHybridizationComplete000
extractDrugHybridizationRatio0.0000.0000.001
extractDrugIPMolecularLearning0.0000.0000.001
extractDrugKR000
extractDrugKRComplete0.0000.0000.001
extractDrugKappaShapeIndices000
extractDrugKierHallSmarts000
extractDrugLargestChain0.0000.0000.001
extractDrugLargestPiSystem000
extractDrugLengthOverBreadth0.0000.0000.001
extractDrugLongestAliphaticChain000
extractDrugMACCS0.0000.0010.000
extractDrugMACCSComplete000
extractDrugMDE000
extractDrugMannholdLogP0.0000.0000.001
extractDrugMomentOfInertia0.0000.0010.000
extractDrugOBFP20.0040.0000.005
extractDrugOBFP30.0010.0010.002
extractDrugOBFP40.0370.0010.040
extractDrugOBMACCS0.0020.0000.002
extractDrugPetitjeanNumber0.0000.0010.000
extractDrugPetitjeanShapeIndex0.0000.0000.001
extractDrugPubChem0.0010.0000.001
extractDrugPubChemComplete000
extractDrugRotatableBondsCount0.0000.0010.000
extractDrugRuleOfFive0.0000.0000.001
extractDrugShortestPath000
extractDrugShortestPathComplete0.0000.0010.000
extractDrugStandard0.0000.0000.001
extractDrugStandardComplete0.0000.0000.001
extractDrugTPSA0.0000.0000.001
extractDrugVABC000
extractDrugVAdjMa000
extractDrugWHIM0.0010.0000.000
extractDrugWeight000
extractDrugWeightedPath0.0000.0010.001
extractDrugWienerNumbers000
extractDrugXLogP0.0000.0000.001
extractDrugZagrebIndex000
extractPCMBLOSUM0.0040.0010.005
extractPCMDescScales0.0040.0010.005
extractPCMFAScales0.0100.0010.011
extractPCMMDSScales0.0030.0010.003
extractPCMPropScales0.0040.0000.005
extractPCMScales0.0050.0010.006
extractProtAAC0.0010.0000.001
extractProtAPAAC0.2520.0030.263
extractProtCTDC0.0010.0000.001
extractProtCTDD0.0020.0010.002
extractProtCTDT0.0010.0000.002
extractProtCTriad0.0270.0020.029
extractProtDC0.0010.0010.003
extractProtGeary0.0360.0020.038
extractProtMoran0.0360.0040.041
extractProtMoreauBroto0.0320.0030.035
extractProtPAAC0.1160.0020.118
extractProtPSSM0.0000.0010.001
extractProtPSSMAcc0.0010.0000.001
extractProtPSSMFeature000
extractProtQSO0.2090.0030.212
extractProtSOCN0.2050.0010.207
extractProtTC0.0100.0260.036
getCPI0.0010.0000.001
getDrug000
getFASTAFromKEGG0.0000.0010.000
getFASTAFromUniProt000
getMolFromCAS000
getMolFromChEMBL0.0010.0000.000
getMolFromDrugBank000
getMolFromKEGG000
getMolFromPubChem000
getPDBFromRCSBPDB0.0000.0010.000
getPPI0.0010.0000.001
getProt000
getSeqFromKEGG000
getSeqFromRCSBPDB000
getSeqFromUniProt000
getSmiFromChEMBL000
getSmiFromDrugBank000
getSmiFromKEGG000
getSmiFromPubChem0.0000.0010.000
readFASTA000
readMolFromSDF0.0010.0000.001
readMolFromSmi000
readPDB0.2390.0010.241
searchDrug0.0000.0000.001
segProt0.0010.0010.001