Multiple platform build/check report for BioC 3.22 - BUILD results for ACME on palomino8

Hostname	OS	Arch (*)	R version	Installed pkgs
nebbiolo2	Linux (Ubuntu 24.04.3 LTS)	x86_64	4.5.1 (2025-06-13) -- "Great Square Root"	4818
palomino8	Windows Server 2022 Datacenter	x64	4.5.1 (2025-06-13 ucrt) -- "Great Square Root"	4554
lconway	macOS 12.7.1 Monterey	x86_64	4.5.1 (2025-06-13) -- "Great Square Root"	4595
kjohnson3	macOS 13.7.7 Ventura	arm64	4.5.1 Patched (2025-06-14 r88325) -- "Great Square Root"	4537
taishan	Linux (openEuler 24.03 LTS)	aarch64	4.5.0 (2025-04-11) -- "How About a Twenty-Six"	4535
Click on any hostname to see more info about the system (e.g. compilers) () as reported by 'uname -p', except on Windows and Mac OS X*

BUILD results for ACME on palomino8

To the developers/maintainers of the ACME package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/ACME.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results

Summary

Package: ACME

Version: 2.65.0

Command: chmod a+r ACME -R && F:\biocbuild\bbs-3.22-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data ACME

StartedAt: 2025-08-14 18:21:16 -0400 (Thu, 14 Aug 2025)

EndedAt: 2025-08-14 18:21:24 -0400 (Thu, 14 Aug 2025)

EllapsedTime: 8.1 seconds

RetCode: 1

Status: ERROR

PackageFile: None

PackageFileSize: NA

Command output

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###
### Running command:
###
###   chmod a+r ACME -R && F:\biocbuild\bbs-3.22-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data ACME
###
##############################################################################
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* checking for file 'ACME/DESCRIPTION' ... OK
* preparing 'ACME':
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to build vignettes
      -----------------------------------
* installing *source* package 'ACME' ...
** this is package 'ACME' version '2.65.0'
** using staged installation
** libs
using C compiler: 'gcc.exe (GCC) 14.2.0'
gcc  -I"F:/biocbuild/bbs-3.22-bioc/R/include" -DNDEBUG     -I"C:/rtools45/x86_64-w64-mingw32.static.posix/include"      -O2 -Wall -std=gnu2x  -mfpmath=sse -msse2 -mstackrealign   -c windowChisq.c -o windowChisq.o
windowChisq.c: In function 'windowChisq':
windowChisq.c:58:21: warning: suggest parentheses around comparison in operand of '&' [-Wparentheses]
   58 |           firstprobe>0) {
      |           ~~~~~~~~~~^~
windowChisq.c:63:20: warning: suggest parentheses around comparison in operand of '&' [-Wparentheses]
   63 |           lastprobe<(na-1)) {
      |           ~~~~~~~~~^~~~~~~
windowChisq.c:21:11: warning: unused variable 'xa' [-Wunused-variable]
   21 |   double *xa,*xlocations,*xchivals;
      |           ^~
windowChisq.c: At top level:
windowChisq.c:86:20: error: initialization of 'void * (*)(void)' from incompatible pointer type 'struct SEXPREC * (*)(struct SEXPREC *, struct SEXPREC *, struct SEXPREC *, struct SEXPREC *, struct SEXPREC *)' [-Wincompatible-pointer-types]
   86 |     {"windowChisq",&windowChisq,5},
      |                    ^
windowChisq.c:86:20: note: (near initialization for 'callMethods[0].fun')
make: *** [F:/biocbuild/bbs-3.22-bioc/R/etc/x64/Makeconf:289: windowChisq.o] Error 1
ERROR: compilation failed for package 'ACME'
* removing 'F:/biocbuild/bbs-3.22-bioc/tmpdir/Rtmpk1I9Ft/Rinstf9102ba23ce7/ACME'
      -----------------------------------
ERROR: package installation failed