Sokratis Kariotis
| Snapshot Date: 2019-10-15 17:01:26 -0400 (Tue, 15 Oct 2019) |
| URL: https://git.bioconductor.org/packages/pathprint |
| Branch: RELEASE_3_9 |
| Last Commit: 62f54dc |
| Last Changed Date: 2019-05-02 11:54:06 -0400 (Thu, 02 May 2019) |
| Back to Multiple platform build/check report for BioC 3.9 |
|
This page was generated on 2019-10-16 12:38:01 -0400 (Wed, 16 Oct 2019).
| Package 1176/1741 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| pathprint 1.14.0 Sokratis Kariotis
| malbec2 | Linux (Ubuntu 18.04.2 LTS) / x86_64 | OK | OK | OK | | ||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | [ OK ] | OK | | ||||||
| celaya2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK | |
| Package: pathprint |
| Version: 1.14.0 |
| Command: C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:pathprint.install-out.txt --library=C:\Users\biocbuild\bbs-3.9-bioc\R\library --no-vignettes --timings pathprint_1.14.0.tar.gz |
| StartedAt: 2019-10-16 05:51:06 -0400 (Wed, 16 Oct 2019) |
| EndedAt: 2019-10-16 06:01:48 -0400 (Wed, 16 Oct 2019) |
| EllapsedTime: 641.8 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: pathprint.Rcheck |
| Warnings: 0 |
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### Running command:
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### C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:pathprint.install-out.txt --library=C:\Users\biocbuild\bbs-3.9-bioc\R\library --no-vignettes --timings pathprint_1.14.0.tar.gz
###
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* using log directory 'C:/Users/biocbuild/bbs-3.9-bioc/meat/pathprint.Rcheck'
* using R version 3.6.1 (2019-07-05)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'pathprint/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'pathprint' version '1.14.0'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... NOTE
Found the following hidden files and directories:
.BBSoptions
These were most likely included in error. See section 'Package
structure' in the 'Writing R Extensions' manual.
* checking for portable file names ... OK
* checking whether package 'pathprint' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
exprs2fingerprint: no visible binding for global variable 'chipframe'
exprs2fingerprint: no visible binding for global variable 'genesets'
thresholdFingerprint: no visible binding for global variable
'platform.thresholds'
Undefined global functions or variables:
chipframe genesets platform.thresholds
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
Examples with CPU or elapsed time > 5s
user system elapsed
single.chip.enrichment 76.87 1.39 78.42
diffPathways 52.20 2.22 58.44
consensusDistance 26.63 3.73 34.51
thresholdFingerprint 25.36 1.11 26.51
pathprint-package 23.14 1.30 27.53
consensusFingerprint 21.50 1.97 23.73
customCDFAnn 21.22 0.97 23.03
pluripotents.frame 19.91 0.87 20.78
exprs2fingerprint 19.69 1.07 21.32
platform.thresholds 14.20 0.66 14.87
** running examples for arch 'x64' ... OK
Examples with CPU or elapsed time > 5s
user system elapsed
single.chip.enrichment 72.45 1.22 73.69
diffPathways 36.14 0.90 37.07
consensusDistance 28.89 1.72 30.65
thresholdFingerprint 23.01 0.91 23.95
consensusFingerprint 19.72 0.81 20.53
pathprint-package 18.56 0.70 19.26
pluripotents.frame 16.85 0.87 17.72
customCDFAnn 16.00 1.16 17.15
exprs2fingerprint 15.53 0.77 16.29
platform.thresholds 12.27 0.63 12.89
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: 2 NOTEs
See
'C:/Users/biocbuild/bbs-3.9-bioc/meat/pathprint.Rcheck/00check.log'
for details.
pathprint.Rcheck/00install.out
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###
### Running command:
###
### C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/pathprint_1.14.0.tar.gz && rm -rf pathprint.buildbin-libdir && mkdir pathprint.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=pathprint.buildbin-libdir pathprint_1.14.0.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL pathprint_1.14.0.zip && rm pathprint_1.14.0.tar.gz pathprint_1.14.0.zip
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% Total % Received % Xferd Average Speed Time Time Time Current
Dload Upload Total Spent Left Speed
0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0
100 928k 100 928k 0 0 5152k 0 --:--:-- --:--:-- --:--:-- 5302k
install for i386
* installing *source* package 'pathprint' ...
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'pathprint'
finding HTML links ... done
consensusDistance html
consensusFingerprint html
customCDFAnn html
diffPathways html
exprs2fingerprint html
genesets html
pathprint-package html
pathprint.Ce.gs html
pathprint.Dm.gs html
pathprint.Dr.gs html
pathprint.Hs.gs html
pathprint.Mm.gs html
pathprint.Rn.gs html
platform.thresholds html
pluripotents.frame html
single.chip.enrichment html
thresholdFingerprint html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'pathprint' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'pathprint' as pathprint_1.14.0.zip
* DONE (pathprint)
* installing to library 'C:/Users/biocbuild/bbs-3.9-bioc/R/library'
package 'pathprint' successfully unpacked and MD5 sums checked
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pathprint.Rcheck/examples_i386/pathprint-Ex.timings
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pathprint.Rcheck/examples_x64/pathprint-Ex.timings
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