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INSTALL report for RNAdecay on tokay2

This page was generated on 2019-10-16 12:41:20 -0400 (Wed, 16 Oct 2019).

Package 1393/1741HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
RNAdecay 1.4.0
Reed Sorenson
Snapshot Date: 2019-10-15 17:01:26 -0400 (Tue, 15 Oct 2019)
URL: https://git.bioconductor.org/packages/RNAdecay
Branch: RELEASE_3_9
Last Commit: 993968e
Last Changed Date: 2019-05-02 11:54:12 -0400 (Thu, 02 May 2019)
malbec2 Linux (Ubuntu 18.04.2 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64 [ OK ] OK  OK  ERROR 
celaya2 OS X 10.11.6 El Capitan / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: RNAdecay
Version: 1.4.0
Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/RNAdecay_1.4.0.tar.gz && rm -rf RNAdecay.buildbin-libdir && mkdir RNAdecay.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=RNAdecay.buildbin-libdir RNAdecay_1.4.0.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL RNAdecay_1.4.0.zip && rm RNAdecay_1.4.0.tar.gz RNAdecay_1.4.0.zip
StartedAt: 2019-10-15 19:17:21 -0400 (Tue, 15 Oct 2019)
EndedAt: 2019-10-15 19:29:18 -0400 (Tue, 15 Oct 2019)
EllapsedTime: 717.4 seconds
RetCode: 0
Status:  OK  

Command output

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/RNAdecay_1.4.0.tar.gz && rm -rf RNAdecay.buildbin-libdir && mkdir RNAdecay.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=RNAdecay.buildbin-libdir RNAdecay_1.4.0.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL RNAdecay_1.4.0.zip && rm RNAdecay_1.4.0.tar.gz RNAdecay_1.4.0.zip
###
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install for i386

* installing *source* package 'RNAdecay' ...
** using staged installation
** libs
  running 'src/Makefile.win' ...
C:/Users/BIOCBU~1/BBS-3~1.9-B/R/bin/Rscript --vanilla -e "TMB::compile('general_dExp_1sse.cpp',safebounds=FALSE,safeunload=FALSE)"
C:/Rtools/mingw_32/bin/g++  -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG -IC:/Users/BIOCBU~1/BBS-3~1.9-B/R/library/TMB/include -IC:/Users/BIOCBU~1/BBS-3~1.9-B/R/library/RCPPEI~1/include     -DTMB_LIB_INIT=R_init_general_dExp_1sse     -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c general_dExp_1sse.cpp -o general_dExp_1sse.o
C:/Rtools/mingw_32/bin/g++ -shared -s -static-libgcc -o general_dExp_1sse.dll tmp.def general_dExp_1sse.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.9-B/R/bin/i386 -lR
[1] 0
C:/Users/BIOCBU~1/BBS-3~1.9-B/R/bin/Rscript --vanilla -e "TMB::compile('general_Exp_1sse.cpp',safebounds=FALSE,safeunload=FALSE)"
C:/Rtools/mingw_32/bin/g++  -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG -IC:/Users/BIOCBU~1/BBS-3~1.9-B/R/library/TMB/include -IC:/Users/BIOCBU~1/BBS-3~1.9-B/R/library/RCPPEI~1/include     -DTMB_LIB_INIT=R_init_general_Exp_1sse     -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c general_Exp_1sse.cpp -o general_Exp_1sse.o
C:/Rtools/mingw_32/bin/g++ -shared -s -static-libgcc -o general_Exp_1sse.dll tmp.def general_Exp_1sse.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.9-B/R/bin/i386 -lR
[1] 0
C:/Users/BIOCBU~1/BBS-3~1.9-B/R/bin/Rscript --vanilla -e "TMB::compile('general_dExp_2sse.cpp',safebounds=FALSE,safeunload=FALSE)"
C:/Rtools/mingw_32/bin/g++  -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG -IC:/Users/BIOCBU~1/BBS-3~1.9-B/R/library/TMB/include -IC:/Users/BIOCBU~1/BBS-3~1.9-B/R/library/RCPPEI~1/include     -DTMB_LIB_INIT=R_init_general_dExp_2sse     -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c general_dExp_2sse.cpp -o general_dExp_2sse.o
C:/Rtools/mingw_32/bin/g++ -shared -s -static-libgcc -o general_dExp_2sse.dll tmp.def general_dExp_2sse.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.9-B/R/bin/i386 -lR
[1] 0
C:/Users/BIOCBU~1/BBS-3~1.9-B/R/bin/Rscript --vanilla -e "TMB::compile('general_Exp_2sse.cpp',safebounds=FALSE,safeunload=FALSE)"
C:/Rtools/mingw_32/bin/g++  -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG -IC:/Users/BIOCBU~1/BBS-3~1.9-B/R/library/TMB/include -IC:/Users/BIOCBU~1/BBS-3~1.9-B/R/library/RCPPEI~1/include     -DTMB_LIB_INIT=R_init_general_Exp_2sse     -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c general_Exp_2sse.cpp -o general_Exp_2sse.o
C:/Rtools/mingw_32/bin/g++ -shared -s -static-libgcc -o general_Exp_2sse.dll tmp.def general_Exp_2sse.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.9-B/R/bin/i386 -lR
[1] 0
C:/Users/BIOCBU~1/BBS-3~1.9-B/R/bin/Rscript --vanilla -e "TMB::compile('general_dExp_3sse.cpp',safebounds=FALSE,safeunload=FALSE)"
C:/Rtools/mingw_32/bin/g++  -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG -IC:/Users/BIOCBU~1/BBS-3~1.9-B/R/library/TMB/include -IC:/Users/BIOCBU~1/BBS-3~1.9-B/R/library/RCPPEI~1/include     -DTMB_LIB_INIT=R_init_general_dExp_3sse     -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c general_dExp_3sse.cpp -o general_dExp_3sse.o
C:/Rtools/mingw_32/bin/g++ -shared -s -static-libgcc -o general_dExp_3sse.dll tmp.def general_dExp_3sse.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.9-B/R/bin/i386 -lR
[1] 0
C:/Users/BIOCBU~1/BBS-3~1.9-B/R/bin/Rscript --vanilla -e "TMB::compile('general_Exp_3sse.cpp',safebounds=FALSE,safeunload=FALSE)"
C:/Rtools/mingw_32/bin/g++  -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG -IC:/Users/BIOCBU~1/BBS-3~1.9-B/R/library/TMB/include -IC:/Users/BIOCBU~1/BBS-3~1.9-B/R/library/RCPPEI~1/include     -DTMB_LIB_INIT=R_init_general_Exp_3sse     -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c general_Exp_3sse.cpp -o general_Exp_3sse.o
C:/Rtools/mingw_32/bin/g++ -shared -s -static-libgcc -o general_Exp_3sse.dll tmp.def general_Exp_3sse.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.9-B/R/bin/i386 -lR
[1] 0
C:/Users/BIOCBU~1/BBS-3~1.9-B/R/bin/Rscript --vanilla -e "TMB::compile('general_dExp_4sse.cpp',safebounds=FALSE,safeunload=FALSE)"
C:/Rtools/mingw_32/bin/g++  -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG -IC:/Users/BIOCBU~1/BBS-3~1.9-B/R/library/TMB/include -IC:/Users/BIOCBU~1/BBS-3~1.9-B/R/library/RCPPEI~1/include     -DTMB_LIB_INIT=R_init_general_dExp_4sse     -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c general_dExp_4sse.cpp -o general_dExp_4sse.o
C:/Rtools/mingw_32/bin/g++ -shared -s -static-libgcc -o general_dExp_4sse.dll tmp.def general_dExp_4sse.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.9-B/R/bin/i386 -lR
[1] 0
C:/Users/BIOCBU~1/BBS-3~1.9-B/R/bin/Rscript --vanilla -e "TMB::compile('general_Exp_4sse.cpp',safebounds=FALSE,safeunload=FALSE)"
C:/Rtools/mingw_32/bin/g++  -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG -IC:/Users/BIOCBU~1/BBS-3~1.9-B/R/library/TMB/include -IC:/Users/BIOCBU~1/BBS-3~1.9-B/R/library/RCPPEI~1/include     -DTMB_LIB_INIT=R_init_general_Exp_4sse     -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c general_Exp_4sse.cpp -o general_Exp_4sse.o
C:/Rtools/mingw_32/bin/g++ -shared -s -static-libgcc -o general_Exp_4sse.dll tmp.def general_Exp_4sse.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.9-B/R/bin/i386 -lR
[1] 0
installing to C:/Users/biocbuild/bbs-3.9-bioc/meat/RNAdecay.buildbin-libdir/00LOCK-RNAdecay/00new/RNAdecay/libs/i386
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'RNAdecay'
    finding HTML links ... done
    RPMs                                    html  
    a_high                                  html  
    aic                                     html  
    cols                                    html  
    comb_cv                                 html  
    const_decay                             html  
    constraint_fun_list_maker               html  
    decay_data                              html  
    decay_plot                              html  
    fit_var                                 html  
    group_map                               html  
    groupings                               html  
    log_lik                                 html  
    mod_optimization                        html  
    models                                  html  
    n_par                                   html  
    plain_theme                             html  
    results                                 html  
    sse_null_decaying_decay                 html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'RNAdecay' ...
** libs
  running 'src/Makefile.win' ...
C:/Users/BIOCBU~1/BBS-3~1.9-B/R/bin/Rscript --vanilla -e "TMB::compile('general_dExp_1sse.cpp',safebounds=FALSE,safeunload=FALSE)"
C:/Rtools/mingw_64/bin/g++  -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG -IC:/Users/BIOCBU~1/BBS-3~1.9-B/R/library/TMB/include -IC:/Users/BIOCBU~1/BBS-3~1.9-B/R/library/RCPPEI~1/include     -DTMB_LIB_INIT=R_init_general_dExp_1sse     -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c general_dExp_1sse.cpp -o general_dExp_1sse.o
C:/Rtools/mingw_64/bin/g++ -shared -s -static-libgcc -o general_dExp_1sse.dll tmp.def general_dExp_1sse.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.9-B/R/bin/x64 -lR
[1] 0
C:/Users/BIOCBU~1/BBS-3~1.9-B/R/bin/Rscript --vanilla -e "TMB::compile('general_Exp_1sse.cpp',safebounds=FALSE,safeunload=FALSE)"
C:/Rtools/mingw_64/bin/g++  -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG -IC:/Users/BIOCBU~1/BBS-3~1.9-B/R/library/TMB/include -IC:/Users/BIOCBU~1/BBS-3~1.9-B/R/library/RCPPEI~1/include     -DTMB_LIB_INIT=R_init_general_Exp_1sse     -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c general_Exp_1sse.cpp -o general_Exp_1sse.o
C:/Rtools/mingw_64/bin/g++ -shared -s -static-libgcc -o general_Exp_1sse.dll tmp.def general_Exp_1sse.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.9-B/R/bin/x64 -lR
[1] 0
C:/Users/BIOCBU~1/BBS-3~1.9-B/R/bin/Rscript --vanilla -e "TMB::compile('general_dExp_2sse.cpp',safebounds=FALSE,safeunload=FALSE)"
C:/Rtools/mingw_64/bin/g++  -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG -IC:/Users/BIOCBU~1/BBS-3~1.9-B/R/library/TMB/include -IC:/Users/BIOCBU~1/BBS-3~1.9-B/R/library/RCPPEI~1/include     -DTMB_LIB_INIT=R_init_general_dExp_2sse     -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c general_dExp_2sse.cpp -o general_dExp_2sse.o
C:/Rtools/mingw_64/bin/g++ -shared -s -static-libgcc -o general_dExp_2sse.dll tmp.def general_dExp_2sse.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.9-B/R/bin/x64 -lR
[1] 0
C:/Users/BIOCBU~1/BBS-3~1.9-B/R/bin/Rscript --vanilla -e "TMB::compile('general_Exp_2sse.cpp',safebounds=FALSE,safeunload=FALSE)"
C:/Rtools/mingw_64/bin/g++  -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG -IC:/Users/BIOCBU~1/BBS-3~1.9-B/R/library/TMB/include -IC:/Users/BIOCBU~1/BBS-3~1.9-B/R/library/RCPPEI~1/include     -DTMB_LIB_INIT=R_init_general_Exp_2sse     -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c general_Exp_2sse.cpp -o general_Exp_2sse.o
C:/Rtools/mingw_64/bin/g++ -shared -s -static-libgcc -o general_Exp_2sse.dll tmp.def general_Exp_2sse.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.9-B/R/bin/x64 -lR
[1] 0
C:/Users/BIOCBU~1/BBS-3~1.9-B/R/bin/Rscript --vanilla -e "TMB::compile('general_dExp_3sse.cpp',safebounds=FALSE,safeunload=FALSE)"
C:/Rtools/mingw_64/bin/g++  -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG -IC:/Users/BIOCBU~1/BBS-3~1.9-B/R/library/TMB/include -IC:/Users/BIOCBU~1/BBS-3~1.9-B/R/library/RCPPEI~1/include     -DTMB_LIB_INIT=R_init_general_dExp_3sse     -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c general_dExp_3sse.cpp -o general_dExp_3sse.o
C:/Rtools/mingw_64/bin/g++ -shared -s -static-libgcc -o general_dExp_3sse.dll tmp.def general_dExp_3sse.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.9-B/R/bin/x64 -lR
[1] 0
C:/Users/BIOCBU~1/BBS-3~1.9-B/R/bin/Rscript --vanilla -e "TMB::compile('general_Exp_3sse.cpp',safebounds=FALSE,safeunload=FALSE)"
C:/Rtools/mingw_64/bin/g++  -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG -IC:/Users/BIOCBU~1/BBS-3~1.9-B/R/library/TMB/include -IC:/Users/BIOCBU~1/BBS-3~1.9-B/R/library/RCPPEI~1/include     -DTMB_LIB_INIT=R_init_general_Exp_3sse     -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c general_Exp_3sse.cpp -o general_Exp_3sse.o
C:/Rtools/mingw_64/bin/g++ -shared -s -static-libgcc -o general_Exp_3sse.dll tmp.def general_Exp_3sse.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.9-B/R/bin/x64 -lR
[1] 0
C:/Users/BIOCBU~1/BBS-3~1.9-B/R/bin/Rscript --vanilla -e "TMB::compile('general_dExp_4sse.cpp',safebounds=FALSE,safeunload=FALSE)"
C:/Rtools/mingw_64/bin/g++  -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG -IC:/Users/BIOCBU~1/BBS-3~1.9-B/R/library/TMB/include -IC:/Users/BIOCBU~1/BBS-3~1.9-B/R/library/RCPPEI~1/include     -DTMB_LIB_INIT=R_init_general_dExp_4sse     -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c general_dExp_4sse.cpp -o general_dExp_4sse.o
C:/Rtools/mingw_64/bin/g++ -shared -s -static-libgcc -o general_dExp_4sse.dll tmp.def general_dExp_4sse.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.9-B/R/bin/x64 -lR
[1] 0
C:/Users/BIOCBU~1/BBS-3~1.9-B/R/bin/Rscript --vanilla -e "TMB::compile('general_Exp_4sse.cpp',safebounds=FALSE,safeunload=FALSE)"
C:/Rtools/mingw_64/bin/g++  -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG -IC:/Users/BIOCBU~1/BBS-3~1.9-B/R/library/TMB/include -IC:/Users/BIOCBU~1/BBS-3~1.9-B/R/library/RCPPEI~1/include     -DTMB_LIB_INIT=R_init_general_Exp_4sse     -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c general_Exp_4sse.cpp -o general_Exp_4sse.o
C:/Rtools/mingw_64/bin/g++ -shared -s -static-libgcc -o general_Exp_4sse.dll tmp.def general_Exp_4sse.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.9-B/R/bin/x64 -lR
[1] 0
installing to C:/Users/biocbuild/bbs-3.9-bioc/meat/RNAdecay.buildbin-libdir/RNAdecay/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'RNAdecay' as RNAdecay_1.4.0.zip
* DONE (RNAdecay)
* installing to library 'C:/Users/biocbuild/bbs-3.9-bioc/R/library'
package 'RNAdecay' successfully unpacked and MD5 sums checked