Michael Skinnider
| Snapshot Date: 2019-10-15 17:01:26 -0400 (Tue, 15 Oct 2019) |
| URL: https://git.bioconductor.org/packages/PrInCE |
| Branch: RELEASE_3_9 |
| Last Commit: ddebb2e |
| Last Changed Date: 2019-09-27 18:13:29 -0400 (Fri, 27 Sep 2019) |
| Back to Multiple platform build/check report for BioC 3.9 |
|
This page was generated on 2019-10-16 12:17:35 -0400 (Wed, 16 Oct 2019).
| Package 1248/1741 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| PrInCE 1.0.1 Michael Skinnider
| malbec2 | Linux (Ubuntu 18.04.2 LTS) / x86_64 | OK | OK | [ OK ] | | ||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | | ||||||
| celaya2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK | |
| Package: PrInCE |
| Version: 1.0.1 |
| Command: /home/biocbuild/bbs-3.9-bioc/R/bin/R CMD check --install=check:PrInCE.install-out.txt --library=/home/biocbuild/bbs-3.9-bioc/R/library --no-vignettes --timings PrInCE_1.0.1.tar.gz |
| StartedAt: 2019-10-16 04:03:56 -0400 (Wed, 16 Oct 2019) |
| EndedAt: 2019-10-16 04:07:21 -0400 (Wed, 16 Oct 2019) |
| EllapsedTime: 205.0 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: PrInCE.Rcheck |
| Warnings: 0 |
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### Running command:
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### /home/biocbuild/bbs-3.9-bioc/R/bin/R CMD check --install=check:PrInCE.install-out.txt --library=/home/biocbuild/bbs-3.9-bioc/R/library --no-vignettes --timings PrInCE_1.0.1.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.9-bioc/meat/PrInCE.Rcheck’
* using R version 3.6.1 (2019-07-05)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘PrInCE/DESCRIPTION’ ... OK
* this is package ‘PrInCE’ version ‘1.0.1’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘PrInCE’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU or elapsed time > 5s
user system elapsed
predict_interactions 7.170 0.045 7.214
predict_ensemble 6.853 0.075 6.929
calculate_precision 6.438 0.107 6.552
PrInCE 5.959 0.048 6.007
threshold_precision 5.690 0.052 5.742
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: OK
PrInCE.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.9-bioc/R/bin/R CMD INSTALL PrInCE ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.9-bioc/R/library’ * installing *source* package ‘PrInCE’ ... ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help Loading required namespace: PrInCE Registered S3 method overwritten by 'xts': method from as.zoo.xts zoo Registered S3 method overwritten by 'quantmod': method from as.zoo.data.frame zoo Registered S3 methods overwritten by 'forecast': method from fitted.fracdiff fracdiff residuals.fracdiff fracdiff *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (PrInCE)
PrInCE.Rcheck/PrInCE-Ex.timings
| name | user | system | elapsed | |
| PrInCE | 5.959 | 0.048 | 6.007 | |
| adjacency_matrix_from_data_frame | 0.002 | 0.000 | 0.002 | |
| adjacency_matrix_from_list | 1.042 | 0.020 | 1.062 | |
| build_gaussians | 0.545 | 0.004 | 0.549 | |
| calculate_precision | 6.438 | 0.107 | 6.552 | |
| check_gaussians | 0.211 | 0.064 | 0.275 | |
| choose_gaussians | 0.194 | 0.000 | 0.193 | |
| clean_profile | 0.046 | 0.004 | 0.050 | |
| clean_profiles | 0.050 | 0.000 | 0.049 | |
| co_apex | 0.179 | 0.040 | 0.219 | |
| detect_complexes | 0.161 | 0.011 | 0.172 | |
| filter_profiles | 0.476 | 0.000 | 0.476 | |
| fit_curve | 0.252 | 0.000 | 0.252 | |
| fit_gaussians | 0.232 | 0.000 | 0.233 | |
| impute_neighbors | 0.041 | 0.004 | 0.046 | |
| is_unweighted | 1.171 | 0.008 | 1.180 | |
| is_weighted | 1.275 | 0.008 | 1.283 | |
| make_initial_conditions | 0.061 | 0.004 | 0.066 | |
| make_labels | 1.694 | 0.013 | 1.707 | |
| match_matrix_dimensions | 2.939 | 0.008 | 2.947 | |
| predict_ensemble | 6.853 | 0.075 | 6.929 | |
| predict_interactions | 7.170 | 0.045 | 7.214 | |
| threshold_precision | 5.690 | 0.052 | 5.742 | |