Benjamin Haibe-Kains
| Snapshot Date: 2019-10-15 17:01:26 -0400 (Tue, 15 Oct 2019) |
| URL: https://git.bioconductor.org/packages/PharmacoGx |
| Branch: RELEASE_3_9 |
| Last Commit: 195bc92 |
| Last Changed Date: 2019-10-14 13:06:01 -0400 (Mon, 14 Oct 2019) |
| Back to Multiple platform build/check report for BioC 3.9 |
|
This page was generated on 2019-10-16 12:36:33 -0400 (Wed, 16 Oct 2019).
| Package 1202/1741 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| PharmacoGx 1.14.2 Benjamin Haibe-Kains
| malbec2 | Linux (Ubuntu 18.04.2 LTS) / x86_64 | OK | OK | OK | | ||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | [ OK ] | OK | OK | OK | | ||||||
| celaya2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | TIMEOUT | OK |
| Package: PharmacoGx |
| Version: 1.14.2 |
| Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/PharmacoGx_1.14.2.tar.gz && rm -rf PharmacoGx.buildbin-libdir && mkdir PharmacoGx.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=PharmacoGx.buildbin-libdir PharmacoGx_1.14.2.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL PharmacoGx_1.14.2.zip && rm PharmacoGx_1.14.2.tar.gz PharmacoGx_1.14.2.zip |
| StartedAt: 2019-10-15 19:48:25 -0400 (Tue, 15 Oct 2019) |
| EndedAt: 2019-10-15 19:50:35 -0400 (Tue, 15 Oct 2019) |
| EllapsedTime: 130.8 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/PharmacoGx_1.14.2.tar.gz && rm -rf PharmacoGx.buildbin-libdir && mkdir PharmacoGx.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=PharmacoGx.buildbin-libdir PharmacoGx_1.14.2.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL PharmacoGx_1.14.2.zip && rm PharmacoGx_1.14.2.tar.gz PharmacoGx_1.14.2.zip
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install for i386
* installing *source* package 'PharmacoGx' ...
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'PharmacoGx'
finding HTML links ... done
CCLEsmall html
CMAPsmall html
GDSCsmall html
HDAC_genes html
LogLogisticRegression html
PharmacoSet-class html
PharmacoSet html
amcc html
availablePSets html
cellInfo-set html
cellInfo html
cellNames-set html
cellNames html
checkPSetStructure html
computeABC html
computeAUC html
computeAmax html
computeICn html
computeSlope html
connectivityScore html
cosinePerm html
dateCreated html
dim-PharmacoSet-method html
downloadPSet html
downloadPertSig html
drugDoseResponseCurve html
drugInfo-set html
drugInfo html
drugNames-set html
drugNames html
drugPerturbationSig html
drugSensitivitySig html
fNames html
featureInfo-set html
featureInfo html
filterNoisyCurves html
gwc html
intersectList html
intersectPSet html
mDataNames html
mcc html
molecularProfiles-set html
molecularProfiles html
pSetName html
pertNumber-set html
pertNumber html
phenoInfo-set html
phenoInfo html
sensNumber-set html
sensNumber html
sensitivityInfo-set html
sensitivityInfo html
sensitivityMeasures html
sensitivityProfiles-set html
sensitivityProfiles html
show-PharmacoSet-method html
show-PharmacoSig-method html
showSigAnnot html
sub-PharmacoSet-ANY-ANY-ANY-method html
subsetTo html
summarizeMolecularProfiles html
summarizeSensitivityProfiles html
symSetDiffList html
unionList html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'PharmacoGx' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'PharmacoGx' as PharmacoGx_1.14.2.zip
* DONE (PharmacoGx)
* installing to library 'C:/Users/biocbuild/bbs-3.9-bioc/R/library'
package 'PharmacoGx' successfully unpacked and MD5 sums checked