Lang Ho Lee
| Snapshot Date: 2019-04-12 17:01:30 -0400 (Fri, 12 Apr 2019) |
| URL: https://git.bioconductor.org/packages/XINA |
| Branch: RELEASE_3_8 |
| Last Commit: 5941b22 |
| Last Changed Date: 2019-01-04 13:18:28 -0400 (Fri, 04 Jan 2019) |
| Back to Multiple platform build/check report for BioC 3.8 |
|
This page was generated on 2019-04-13 11:29:38 -0400 (Sat, 13 Apr 2019).
| Package 1639/1649 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| XINA 1.0.1 Lang Ho Lee
| malbec1 | Linux (Ubuntu 16.04.6 LTS) / x86_64 | OK | ERROR | skipped | |||||||
| tokay1 | Windows Server 2012 R2 Standard / x64 | OK | OK | [ OK ] | OK | | ||||||
| merida1 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK | |
| Package: XINA |
| Version: 1.0.1 |
| Command: C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:XINA.install-out.txt --library=C:\Users\biocbuild\bbs-3.8-bioc\R\library --no-vignettes --timings XINA_1.0.1.tar.gz |
| StartedAt: 2019-04-13 06:14:09 -0400 (Sat, 13 Apr 2019) |
| EndedAt: 2019-04-13 06:20:02 -0400 (Sat, 13 Apr 2019) |
| EllapsedTime: 353.1 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: XINA.Rcheck |
| Warnings: 0 |
##############################################################################
##############################################################################
###
### Running command:
###
### C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:XINA.install-out.txt --library=C:\Users\biocbuild\bbs-3.8-bioc\R\library --no-vignettes --timings XINA_1.0.1.tar.gz
###
##############################################################################
##############################################################################
* using log directory 'C:/Users/biocbuild/bbs-3.8-bioc/meat/XINA.Rcheck'
* using R version 3.5.3 (2019-03-11)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'XINA/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'XINA' version '1.0.1'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ...Warning: unable to access index for repository https://CRAN.R-project.org/src/contrib:
cannot open URL 'https://CRAN.R-project.org/src/contrib/PACKAGES'
OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'XINA' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... NOTE
Package in Depends field not imported from: 'Biobase'
These packages need to be imported from (in the NAMESPACE file)
for when this namespace is loaded but not attached.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
Examples with CPU or elapsed time > 5s
user system elapsed
xina_clustering 54.60 0.08 54.67
plot_condition_compositions 24.73 0.02 24.75
plot_clusters 13.75 0.08 13.83
mutate_colors 9.92 0.01 9.94
get_condition_biased_comigrations 7.66 0.02 7.67
plot_clusters_all 1.14 0.03 5.72
** running examples for arch 'x64' ... OK
Examples with CPU or elapsed time > 5s
user system elapsed
xina_clustering 43.19 0.05 43.24
plot_condition_compositions 18.03 0.01 18.04
mutate_colors 10.30 0.07 10.37
plot_clusters 10.31 0.04 10.35
get_condition_biased_comigrations 5.86 0.03 5.89
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: 1 NOTE
See
'C:/Users/biocbuild/bbs-3.8-bioc/meat/XINA.Rcheck/00check.log'
for details.
XINA.Rcheck/00install.out
##############################################################################
##############################################################################
###
### Running command:
###
### C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.8/bioc/src/contrib/XINA_1.0.1.tar.gz && rm -rf XINA.buildbin-libdir && mkdir XINA.buildbin-libdir && C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=XINA.buildbin-libdir XINA_1.0.1.tar.gz && C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD INSTALL XINA_1.0.1.zip && rm XINA_1.0.1.tar.gz XINA_1.0.1.zip
###
##############################################################################
##############################################################################
% Total % Received % Xferd Average Speed Time Time Time Current
Dload Upload Total Spent Left Speed
0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0
100 636k 100 636k 0 0 12.9M 0 --:--:-- --:--:-- --:--:-- 13.8M
install for i386
* installing *source* package 'XINA' ...
** R
** data
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'XINA'
finding HTML links ... done
add_legend html
alluvial_enriched html
alluvial_enrichment_tests html
calculate_centrality_scores html
default_size html
draw_alluvial_plot html
example_clusters html
extract_data_column html
find_similar_clusters html
generate_count_table html
generate_superset html
get_color_for_nodes html
get_colors html
get_comigrations_by_name html
get_condition_biased_comigrations html
get_layout html
get_mTOR_proteins html
get_random_data html
get_stats html
get_theme_blank html
get_unknown_ppi_nodes html
gn html
gn_desc html
hprd_ppi html
length2 html
load_previous_results html
make_random_xina_data html
mutate_colors html
organize_clusters html
plot_NA html
plot_clusters html
plot_clusters_all html
plot_condition_compositions html
plot_enrichment_results html
rank_centrality html
string_example html
xina_analysis html
xina_clustering html
xina_enrichment html
xina_plot_all html
xina_plot_bycluster html
xina_plot_single html
xina_result_example html
** building package indices
** installing vignettes
** testing if installed package can be loaded
In R CMD INSTALL
install for x64
* installing *source* package 'XINA' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'XINA' as XINA_1.0.1.zip
* DONE (XINA)
In R CMD INSTALL
In R CMD INSTALL
* installing to library 'C:/Users/biocbuild/bbs-3.8-bioc/R/library'
package 'XINA' successfully unpacked and MD5 sums checked
In R CMD INSTALL
|
XINA.Rcheck/examples_i386/XINA-Ex.timings
|
XINA.Rcheck/examples_x64/XINA-Ex.timings
|