Kevin Rue-Albrecht
| Snapshot Date: 2019-04-12 17:01:30 -0400 (Fri, 12 Apr 2019) |
| URL: https://git.bioconductor.org/packages/GOexpress |
| Branch: RELEASE_3_8 |
| Last Commit: a9b01a7 |
| Last Changed Date: 2019-01-04 13:05:38 -0400 (Fri, 04 Jan 2019) |
| Back to Multiple platform build/check report for BioC 3.8 |
|
This page was generated on 2019-04-13 11:24:20 -0400 (Sat, 13 Apr 2019).
| Package 659/1649 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| GOexpress 1.16.1 Kevin Rue-Albrecht
| malbec1 | Linux (Ubuntu 16.04.6 LTS) / x86_64 | OK | OK | OK | | ||||||
| tokay1 | Windows Server 2012 R2 Standard / x64 | [ OK ] | OK | WARNINGS | OK | | ||||||
| merida1 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK | |
| Package: GOexpress |
| Version: 1.16.1 |
| Command: C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.8/bioc/src/contrib/GOexpress_1.16.1.tar.gz && rm -rf GOexpress.buildbin-libdir && mkdir GOexpress.buildbin-libdir && C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=GOexpress.buildbin-libdir GOexpress_1.16.1.tar.gz && C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD INSTALL GOexpress_1.16.1.zip && rm GOexpress_1.16.1.tar.gz GOexpress_1.16.1.zip |
| StartedAt: 2019-04-12 19:27:46 -0400 (Fri, 12 Apr 2019) |
| EndedAt: 2019-04-12 19:28:54 -0400 (Fri, 12 Apr 2019) |
| EllapsedTime: 68.2 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.8/bioc/src/contrib/GOexpress_1.16.1.tar.gz && rm -rf GOexpress.buildbin-libdir && mkdir GOexpress.buildbin-libdir && C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=GOexpress.buildbin-libdir GOexpress_1.16.1.tar.gz && C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD INSTALL GOexpress_1.16.1.zip && rm GOexpress_1.16.1.tar.gz GOexpress_1.16.1.zip
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install for i386
* installing *source* package 'GOexpress' ...
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'GOexpress'
finding HTML links ... done
AlvMac html
AlvMac_GOgenes html
AlvMac_allGO html
AlvMac_allgenes html
AlvMac_results html
AlvMac_results.pVal html
GO_analyse html
GOexpress-package html
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/RtmpeC46od/R.INSTALL91c2f92ce6/GOexpress/man/GOexpress-package.Rd:100: file link 'Biobase' in package 'Biobase' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/RtmpeC46od/R.INSTALL91c2f92ce6/GOexpress/man/GOexpress-package.Rd:102: file link 'RColorBrewer' in package 'RColorBrewer' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/RtmpeC46od/R.INSTALL91c2f92ce6/GOexpress/man/GOexpress-package.Rd:103: file link 'VennDiagram' in package 'VennDiagram' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/RtmpeC46od/R.INSTALL91c2f92ce6/GOexpress/man/GOexpress-package.Rd:109: file link 'bluered' in package 'gplots' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/RtmpeC46od/R.INSTALL91c2f92ce6/GOexpress/man/GOexpress-package.Rd:110: file link 'greenred' in package 'gplots' does not exist and so has been treated as a topic
cluster_GO html
expression_plot html
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/RtmpeC46od/R.INSTALL91c2f92ce6/GOexpress/man/expression_plot.Rd:140: file link 'Biobase' in package 'Biobase' does not exist and so has been treated as a topic
expression_plot_symbol html
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/RtmpeC46od/R.INSTALL91c2f92ce6/GOexpress/man/expression_plot_symbol.Rd:152: file link 'Biobase' in package 'Biobase' does not exist and so has been treated as a topic
expression_profiles html
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/RtmpeC46od/R.INSTALL91c2f92ce6/GOexpress/man/expression_profiles.Rd:154: file link 'Biobase' in package 'Biobase' does not exist and so has been treated as a topic
expression_profiles_symbol html
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/RtmpeC46od/R.INSTALL91c2f92ce6/GOexpress/man/expression_profiles_symbol.Rd:161: file link 'Biobase' in package 'Biobase' does not exist and so has been treated as a topic
heatmap_GO html
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/RtmpeC46od/R.INSTALL91c2f92ce6/GOexpress/man/heatmap_GO.Rd:139: file link 'brewer.pal.info' in package 'RColorBrewer' does not exist and so has been treated as a topic
hist_scores html
list_genes html
microarray2dataset html
pValue_GO html
plot_design html
prefix2dataset html
quantiles_scores html
rerank html
subEset html
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/RtmpeC46od/R.INSTALL91c2f92ce6/GOexpress/man/subEset.Rd:46: file link 'ExpressionSet' in package 'Biobase' does not exist and so has been treated as a topic
subset_scores html
table_genes html
** building package indices
** installing vignettes
** testing if installed package can be loaded
In R CMD INSTALL
install for x64
* installing *source* package 'GOexpress' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'GOexpress' as GOexpress_1.16.1.zip
* DONE (GOexpress)
In R CMD INSTALL
In R CMD INSTALL
* installing to library 'C:/Users/biocbuild/bbs-3.8-bioc/R/library'
package 'GOexpress' successfully unpacked and MD5 sums checked
In R CMD INSTALL