Wessel N. van Wieringen
| Snapshot Date: 2018-10-15 16:45:08 -0400 (Mon, 15 Oct 2018) |
| URL: https://git.bioconductor.org/packages/sigaR |
| Branch: RELEASE_3_7 |
| Last Commit: ef06691 |
| Last Changed Date: 2018-04-30 10:35:22 -0400 (Mon, 30 Apr 2018) |
| Back to Multiple platform build/check report for BioC 3.7 |
|
This page was generated on 2018-10-17 08:24:04 -0400 (Wed, 17 Oct 2018).
| Package 1364/1561 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| sigaR 1.28.0 Wessel N. van Wieringen
| malbec2 | Linux (Ubuntu 16.04.1 LTS) / x86_64 | OK | OK | [ OK ] | | ||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | | ||||||
| merida2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK | |
| Package: sigaR |
| Version: 1.28.0 |
| Command: /home/biocbuild/bbs-3.7-bioc/R/bin/R CMD check --install=check:sigaR.install-out.txt --library=/home/biocbuild/bbs-3.7-bioc/R/library --no-vignettes --timings sigaR_1.28.0.tar.gz |
| StartedAt: 2018-10-16 03:45:22 -0400 (Tue, 16 Oct 2018) |
| EndedAt: 2018-10-16 03:47:45 -0400 (Tue, 16 Oct 2018) |
| EllapsedTime: 143.5 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: sigaR.Rcheck |
| Warnings: 0 |
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### Running command:
###
### /home/biocbuild/bbs-3.7-bioc/R/bin/R CMD check --install=check:sigaR.install-out.txt --library=/home/biocbuild/bbs-3.7-bioc/R/library --no-vignettes --timings sigaR_1.28.0.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.7-bioc/meat/sigaR.Rcheck’
* using R version 3.5.1 Patched (2018-07-12 r74967)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘sigaR/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘sigaR’ version ‘1.28.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘sigaR’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... NOTE
There are ::: calls to the package's namespace in its code. A package
almost never needs to use ::: for its own objects:
‘.alphabivariate’ ‘.alphaest’ ‘.pretest’
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU or elapsed time > 5s
user system elapsed
mutInfTest 58.032 1.12 59.195
cisEffectTune 9.152 0.00 9.158
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: 1 NOTE
See
‘/home/biocbuild/bbs-3.7-bioc/meat/sigaR.Rcheck/00check.log’
for details.
sigaR.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.7-bioc/R/bin/R CMD INSTALL sigaR ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.7-bioc/R/library’ * installing *source* package ‘sigaR’ ... ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded * DONE (sigaR)
sigaR.Rcheck/sigaR-Ex.timings
| name | user | system | elapsed | |
| CNGEheatmaps | 0.816 | 0.040 | 0.855 | |
| ExpressionSet2order | 0.008 | 0.000 | 0.010 | |
| ExpressionSet2subset | 0.012 | 0.000 | 0.011 | |
| ExpressionSet2weightedSubset | 0.24 | 0.00 | 0.24 | |
| RCMestimation | 0.556 | 0.000 | 0.555 | |
| RCMrandom | 0.560 | 0.000 | 0.562 | |
| RCMtest | 2.268 | 0.000 | 2.271 | |
| cghCall2cghSeg | 0.056 | 0.000 | 0.056 | |
| cghCall2maximumSubset | 0.320 | 0.000 | 0.319 | |
| cghCall2order | 0.016 | 0.000 | 0.013 | |
| cghCall2subset | 0.036 | 0.000 | 0.036 | |
| cghCall2weightedSubset | 0.260 | 0.000 | 0.259 | |
| cghSeg2order | 0.028 | 0.000 | 0.029 | |
| cghSeg2subset | 0.044 | 0.000 | 0.047 | |
| cghSeg2weightedSubset | 0.264 | 0.000 | 0.266 | |
| cisEffectPlot | 0.052 | 0.000 | 0.051 | |
| cisEffectTable | 1.148 | 0.004 | 1.153 | |
| cisEffectTest | 1.136 | 0.012 | 1.147 | |
| cisEffectTune | 9.152 | 0.000 | 9.158 | |
| cisTest-class | 0.000 | 0.000 | 0.001 | |
| entTest-class | 0.004 | 0.000 | 0.001 | |
| entropyTest | 0.196 | 0.000 | 0.199 | |
| expandMatching2singleIDs | 0.020 | 0.000 | 0.021 | |
| getSegFeatures | 0.008 | 0.000 | 0.006 | |
| hdEntropy | 0.008 | 0.000 | 0.006 | |
| hdMI | 0.568 | 0.000 | 0.568 | |
| matchAnn2Ann | 0.012 | 0.004 | 0.017 | |
| matchCGHcall2ExpressionSet | 0.028 | 0.000 | 0.028 | |
| merge2ExpressionSets | 0.032 | 0.000 | 0.033 | |
| merge2cghCalls | 0.044 | 0.000 | 0.042 | |
| miTest-class | 0 | 0 | 0 | |
| mutInfTest | 58.032 | 1.120 | 59.195 | |
| nBreakpoints | 0.104 | 0.000 | 0.103 | |
| pathway1sample | 0.064 | 0.004 | 0.067 | |
| pathway2sample | 2.284 | 0.184 | 2.470 | |
| pathwayFit-class | 0.000 | 0.000 | 0.001 | |
| pathwayPlot | 0.052 | 0.000 | 0.053 | |
| pollackCN16 | 0.004 | 0.000 | 0.004 | |
| pollackGE16 | 0.000 | 0.004 | 0.002 | |
| profilesPlot | 0.068 | 0.000 | 0.067 | |
| rcmFit-class | 0.000 | 0.000 | 0.001 | |
| rcmTest-class | 0.000 | 0.000 | 0.001 | |
| splitMatchingAtBreakpoints | 0.108 | 0.000 | 0.107 | |
| uniqGenomicInfo | 0.004 | 0.000 | 0.006 | |