Joseph R Boyd
| Snapshot Date: 2018-10-15 16:45:08 -0400 (Mon, 15 Oct 2018) |
| URL: https://git.bioconductor.org/packages/seqsetvis |
| Branch: RELEASE_3_7 |
| Last Commit: 30638fd |
| Last Changed Date: 2018-05-25 14:53:05 -0400 (Fri, 25 May 2018) |
| Back to Multiple platform build/check report for BioC 3.7 |
|
This page was generated on 2018-10-17 08:31:28 -0400 (Wed, 17 Oct 2018).
| Package 1352/1561 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| seqsetvis 1.0.2 Joseph R Boyd
| malbec2 | Linux (Ubuntu 16.04.1 LTS) / x86_64 | OK | OK | [ OK ] | | ||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | | ||||||
| merida2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK | |
| Package: seqsetvis |
| Version: 1.0.2 |
| Command: /home/biocbuild/bbs-3.7-bioc/R/bin/R CMD check --install=check:seqsetvis.install-out.txt --library=/home/biocbuild/bbs-3.7-bioc/R/library --no-vignettes --timings seqsetvis_1.0.2.tar.gz |
| StartedAt: 2018-10-16 03:42:16 -0400 (Tue, 16 Oct 2018) |
| EndedAt: 2018-10-16 03:46:32 -0400 (Tue, 16 Oct 2018) |
| EllapsedTime: 256.5 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: seqsetvis.Rcheck |
| Warnings: 0 |
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### Running command:
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### /home/biocbuild/bbs-3.7-bioc/R/bin/R CMD check --install=check:seqsetvis.install-out.txt --library=/home/biocbuild/bbs-3.7-bioc/R/library --no-vignettes --timings seqsetvis_1.0.2.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.7-bioc/meat/seqsetvis.Rcheck’
* using R version 3.5.1 Patched (2018-07-12 r74967)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘seqsetvis/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘seqsetvis’ version ‘1.0.2’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘seqsetvis’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU or elapsed time > 5s
user system elapsed
ssvFetchBam 6.564 0.004 6.571
ssvSignalBandedQuantiles 6.160 0.016 6.187
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
Running ‘testthat.R’
OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: OK
seqsetvis.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.7-bioc/R/bin/R CMD INSTALL seqsetvis ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.7-bioc/R/library’ * installing *source* package ‘seqsetvis’ ... ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded * DONE (seqsetvis)
seqsetvis.Rcheck/tests/testthat.Rout
R version 3.5.1 Patched (2018-07-12 r74967) -- "Feather Spray" Copyright (C) 2018 The R Foundation for Statistical Computing Platform: x86_64-pc-linux-gnu (64-bit) R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details. R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications. Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R. > > ## load dependencies > library(testthat) > library(seqsetvis) Loading required package: ggplot2 > library(data.table) > > ## test package > test_check(package = "seqsetvis") ══ testthat results ═══════════════════════════════════════════════════════════ OK: 831 SKIPPED: 0 FAILED: 0 > > proc.time() user system elapsed 75.988 0.348 76.410
seqsetvis.Rcheck/seqsetvis-Ex.timings
| name | user | system | elapsed | |
| applySpline | 0.732 | 0.004 | 0.734 | |
| centerAtMax | 0.284 | 0.004 | 0.289 | |
| centerFixedSizeGRanges | 0.124 | 0.000 | 0.125 | |
| clusteringKmeans | 0.024 | 0.000 | 0.023 | |
| clusteringKmeansNestedHclust | 0.580 | 0.000 | 0.579 | |
| col2hex | 0.000 | 0.000 | 0.002 | |
| easyLoad_bed | 0.052 | 0.000 | 0.072 | |
| easyLoad_broadPeak | 0.116 | 0.000 | 0.127 | |
| easyLoad_narrowPeak | 0.028 | 0.000 | 0.031 | |
| fetchBam | 1.04 | 0.02 | 1.06 | |
| fragLen_calcStranded | 1.744 | 0.076 | 1.823 | |
| fragLen_fromMacs2Xls | 0.004 | 0.000 | 0.003 | |
| ggellipse | 0.992 | 0.000 | 0.995 | |
| prepare_fetch_GRanges | 0.02 | 0.00 | 0.02 | |
| quantileGRangesWidth | 0.000 | 0.000 | 0.002 | |
| safeBrew | 0.020 | 0.000 | 0.018 | |
| ssvFactorizeMembTable | 0.016 | 0.000 | 0.016 | |
| ssvFeatureBars | 0.692 | 0.000 | 0.692 | |
| ssvFeatureBinaryHeatmap | 0.492 | 0.000 | 0.491 | |
| ssvFeatureEuler | 0.596 | 0.000 | 0.596 | |
| ssvFeaturePie | 0.644 | 0.004 | 0.646 | |
| ssvFeatureVenn | 0.608 | 0.000 | 0.607 | |
| ssvFetchBam | 6.564 | 0.004 | 6.571 | |
| ssvFetchBam.single | 1.992 | 0.044 | 2.034 | |
| ssvFetchBigwig | 0.932 | 0.016 | 0.966 | |
| ssvFetchBigwig.single | 0.320 | 0.004 | 0.323 | |
| ssvFetchSignal | 1.988 | 0.012 | 2.001 | |
| ssvMakeMembTable-methods | 0.468 | 0.000 | 0.469 | |
| ssvOverlapIntervalSets | 0.224 | 0.000 | 0.224 | |
| ssvSignalBandedQuantiles | 6.160 | 0.016 | 6.187 | |
| ssvSignalClustering | 1.872 | 0.000 | 1.875 | |
| ssvSignalHeatmap | 0.984 | 0.000 | 0.987 | |
| ssvSignalLineplot | 2.868 | 0.000 | 2.872 | |
| ssvSignalLineplotAgg | 1.188 | 0.000 | 1.190 | |
| ssvSignalScatterplot | 0.844 | 0.004 | 0.848 | |
| viewGRangesWinSample_dt | 1.116 | 0.004 | 1.134 | |
| viewGRangesWinSummary_dt | 1.132 | 0.000 | 1.136 | |