Alvaro Cuadros-Inostroza
| Snapshot Date: 2018-10-15 16:45:08 -0400 (Mon, 15 Oct 2018) |
| URL: https://git.bioconductor.org/packages/TargetSearch |
| Branch: RELEASE_3_7 |
| Last Commit: 17add3a |
| Last Changed Date: 2018-05-03 04:54:46 -0400 (Thu, 03 May 2018) |
| Back to Multiple platform build/check report for BioC 3.7 |
|
This page was generated on 2018-10-17 08:48:09 -0400 (Wed, 17 Oct 2018).
| Package 1464/1561 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| TargetSearch 1.36.1 Alvaro Cuadros-Inostroza
| malbec2 | Linux (Ubuntu 16.04.1 LTS) / x86_64 | OK | OK | OK | | ||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | | ||||||
| merida2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | [ OK ] | OK | |
| Package: TargetSearch |
| Version: 1.36.1 |
| Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --install=check:TargetSearch.install-out.txt --library=/Library/Frameworks/R.framework/Versions/Current/Resources/library --no-vignettes --timings TargetSearch_1.36.1.tar.gz |
| StartedAt: 2018-10-17 00:22:17 -0400 (Wed, 17 Oct 2018) |
| EndedAt: 2018-10-17 00:23:40 -0400 (Wed, 17 Oct 2018) |
| EllapsedTime: 83.7 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: TargetSearch.Rcheck |
| Warnings: 0 |
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### Running command:
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### /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --install=check:TargetSearch.install-out.txt --library=/Library/Frameworks/R.framework/Versions/Current/Resources/library --no-vignettes --timings TargetSearch_1.36.1.tar.gz
###
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* using log directory ‘/Users/biocbuild/bbs-3.7-bioc/meat/TargetSearch.Rcheck’
* using R version 3.5.1 Patched (2018-07-12 r74967)
* using platform: x86_64-apple-darwin15.6.0 (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘TargetSearch/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘TargetSearch’ version ‘1.36.1’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘TargetSearch’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking compiled code ... NOTE
Note: information on .o files is not available
* checking sizes of PDF files under ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU or elapsed time > 5s
user system elapsed
RIcorrect 15.510 0.632 16.353
TSExample 5.181 0.244 5.467
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: 1 NOTE
See
‘/Users/biocbuild/bbs-3.7-bioc/meat/TargetSearch.Rcheck/00check.log’
for details.
TargetSearch.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD INSTALL TargetSearch ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/3.5/Resources/library’ * installing *source* package ‘TargetSearch’ ... ** libs clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -Wall -g -O2 -c Rinit.c -o Rinit.o clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -Wall -g -O2 -c file.c -o file.o clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -Wall -g -O2 -c find_peaks.c -o find_peaks.o clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -Wall -g -O2 -c getLine.c -o getLine.o clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -Wall -g -O2 -c hpf.c -o hpf.o clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -Wall -g -O2 -c ncdf.c -o ncdf.o clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -Wall -g -O2 -c netcdf_peak_finding.c -o netcdf_peak_finding.o clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -Wall -g -O2 -c ppc.c -o ppc.o clang -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o TargetSearch.so Rinit.o file.o find_peaks.o getLine.o hpf.o ncdf.o netcdf_peak_finding.o ppc.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation installing to /Library/Frameworks/R.framework/Versions/3.5/Resources/library/TargetSearch/libs ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded * DONE (TargetSearch)
TargetSearch.Rcheck/TargetSearch-Ex.timings
| name | user | system | elapsed | |
| FAMEoutliers | 0.062 | 0.009 | 0.072 | |
| FindAllPeaks | 1.087 | 0.043 | 1.151 | |
| FindPeaks | 0.365 | 0.010 | 0.380 | |
| ImportFameSettings | 0.015 | 0.001 | 0.016 | |
| ImportLibrary | 0.033 | 0.002 | 0.035 | |
| ImportSamples | 0.007 | 0.000 | 0.008 | |
| NetCDFPeakFinding | 0.413 | 0.040 | 0.480 | |
| Profile | 1.656 | 0.061 | 1.721 | |
| ProfileCleanUp | 1.418 | 0.049 | 1.476 | |
| RIcorrect | 15.510 | 0.632 | 16.353 | |
| TSExample | 5.181 | 0.244 | 5.467 | |
| fixRI | 1.467 | 0.065 | 1.538 | |
| medianRILib | 0.788 | 0.029 | 0.823 | |
| peakFind | 0.437 | 0.022 | 0.461 | |
| plotFAME | 0.018 | 0.004 | 0.022 | |
| plotPeak | 0.421 | 0.029 | 0.455 | |
| plotPeakRI | 1.090 | 0.045 | 1.148 | |
| plotPeakSimple | 0.513 | 0.036 | 0.553 | |
| plotRIdev | 0.618 | 0.038 | 0.659 | |
| plotSpectra | 0.414 | 0.013 | 0.430 | |
| quantMatrix | 1.338 | 0.047 | 1.393 | |
| ri2rt | 0.008 | 0.000 | 0.009 | |
| riMatrix | 1.313 | 0.048 | 1.369 | |
| rt2ri | 0.008 | 0.000 | 0.008 | |
| sampleRI | 0.790 | 0.023 | 0.817 | |
| tsLib-class | 0.031 | 0.003 | 0.038 | |
| tsMSdata-class | 0.002 | 0.000 | 0.002 | |
| tsProfile-class | 0.003 | 0.001 | 0.003 | |
| tsRim-class | 0.005 | 0.000 | 0.006 | |
| tsSample-class | 0.021 | 0.002 | 0.024 | |
| writeLibText | 0.060 | 0.005 | 0.065 | |