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BUILD BIN report for LowMACA on tokay2

This page was generated on 2018-10-17 08:40:14 -0400 (Wed, 17 Oct 2018).

Package 801/1561HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
LowMACA 1.12.0
Stefano de Pretis , Giorgio Melloni
Snapshot Date: 2018-10-15 16:45:08 -0400 (Mon, 15 Oct 2018)
URL: https://git.bioconductor.org/packages/LowMACA
Branch: RELEASE_3_7
Last Commit: c9c3a67
Last Changed Date: 2018-04-30 10:35:36 -0400 (Mon, 30 Apr 2018)
malbec2 Linux (Ubuntu 16.04.1 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64  OK  OK  WARNINGS [ OK ]UNNEEDED, same version exists in internal repository
merida2 OS X 10.11.6 El Capitan / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: LowMACA
Version: 1.12.0
Command: rm -rf LowMACA.buildbin-libdir && mkdir LowMACA.buildbin-libdir && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=LowMACA.buildbin-libdir LowMACA_1.12.0.tar.gz
StartedAt: 2018-10-17 06:37:12 -0400 (Wed, 17 Oct 2018)
EndedAt: 2018-10-17 06:38:04 -0400 (Wed, 17 Oct 2018)
EllapsedTime: 52.7 seconds
RetCode: 0
Status:  OK  
PackageFile: LowMACA_1.12.0.zip
PackageFileSize: 502.9 KiB

Command output

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###
### Running command:
###
###   rm -rf LowMACA.buildbin-libdir && mkdir LowMACA.buildbin-libdir && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=LowMACA.buildbin-libdir LowMACA_1.12.0.tar.gz
###
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install for i386

* installing *source* package 'LowMACA' ...
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'LowMACA'
    finding HTML links ... done
    BLOSUM62                                html  
    LowMACA-class                           html  
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpaQqPJy/R.INSTALL23d424f64aee/LowMACA/man/LowMACA-class.Rd:62: file link 'AAMultipleAlignment' in package 'Biostrings' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpaQqPJy/R.INSTALL23d424f64aee/LowMACA/man/LowMACA-class.Rd:71: file link 'getMutationData' in package 'cgdsr' does not exist and so has been treated as a topic
    LowMACA-package                         html  
    LowMACA_AML                             html  
    alignSequences                          html  
    allPfamAnalysis                         html  
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpaQqPJy/R.INSTALL23d424f64aee/LowMACA/man/allPfamAnalysis.Rd:52: file link 'BiocParallelParam' in package 'BiocParallel' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpaQqPJy/R.INSTALL23d424f64aee/LowMACA/man/allPfamAnalysis.Rd:54: file link 'bpparam' in package 'BiocParallel' does not exist and so has been treated as a topic
    bpAll                                   html  
    entropy                                 html  
    getMutations                            html  
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpaQqPJy/R.INSTALL23d424f64aee/LowMACA/man/getMutations.Rd:20: file link 'getMutationData' in package 'cgdsr' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpaQqPJy/R.INSTALL23d424f64aee/LowMACA/man/getMutations.Rd:32: file link 'getMutationData' in package 'cgdsr' does not exist and so has been treated as a topic
    lfm                                     html  
    lfmSingleSequence                       html  
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpaQqPJy/R.INSTALL23d424f64aee/LowMACA/man/lfmSingleSequence.Rd:29: file link 'BiocParallelParam' in package 'BiocParallel' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpaQqPJy/R.INSTALL23d424f64aee/LowMACA/man/lfmSingleSequence.Rd:31: file link 'bpparam' in package 'BiocParallel' does not exist and so has been treated as a topic
    lmAlignment                             html  
    lmEntropy                               html  
    lmMutations                             html  
    lmObj                                   html  
    lmParams                                html  
    lmPlot                                  html  
    lmPlotSingleSequence                    html  
    mapMutations                            html  
    newLowMACA                              html  
    nullProfile                             html  
    parallelize                             html  
    protter                                 html  
    setup                                   html  
    showTumorType                           html  
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpaQqPJy/R.INSTALL23d424f64aee/LowMACA/man/showTumorType.Rd:19: file link 'getCancerStudies' in package 'cgdsr' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpaQqPJy/R.INSTALL23d424f64aee/LowMACA/man/showTumorType.Rd:26: file link 'getCancerStudies' in package 'cgdsr' does not exist and so has been treated as a topic
** building package indices
** installing vignettes
** testing if installed package can be loaded
Checking if clustalo is in the PATH...
Checking clustalo Version...
Checking perl installation...
Checking perl modules XML::Simple and LWP...
In R CMD INSTALL

install for x64

* installing *source* package 'LowMACA' ...
** testing if installed package can be loaded
Checking if clustalo is in the PATH...
Checking clustalo Version...
Checking perl installation...
Checking perl modules XML::Simple and LWP...
* MD5 sums
packaged installation of 'LowMACA' as LowMACA_1.12.0.zip
* DONE (LowMACA)
In R CMD INSTALL
In R CMD INSTALL