Stefano de Pretis
| Snapshot Date: 2018-10-15 16:45:08 -0400 (Mon, 15 Oct 2018) |
| URL: https://git.bioconductor.org/packages/LowMACA |
| Branch: RELEASE_3_7 |
| Last Commit: c9c3a67 |
| Last Changed Date: 2018-04-30 10:35:36 -0400 (Mon, 30 Apr 2018) |
| Back to Multiple platform build/check report for BioC 3.7 |
|
This page was generated on 2018-10-17 08:54:30 -0400 (Wed, 17 Oct 2018).
| Package 801/1561 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| LowMACA 1.12.0 Stefano de Pretis
| malbec2 | Linux (Ubuntu 16.04.1 LTS) / x86_64 | OK | OK | OK | | ||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | WARNINGS | OK | | ||||||
| merida2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | [ OK ] | OK | |
| Package: LowMACA |
| Version: 1.12.0 |
| Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --install=check:LowMACA.install-out.txt --library=/Library/Frameworks/R.framework/Versions/Current/Resources/library --no-vignettes --timings LowMACA_1.12.0.tar.gz |
| StartedAt: 2018-10-16 22:17:32 -0400 (Tue, 16 Oct 2018) |
| EndedAt: 2018-10-16 22:32:44 -0400 (Tue, 16 Oct 2018) |
| EllapsedTime: 911.7 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: LowMACA.Rcheck |
| Warnings: 0 |
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### Running command:
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### /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --install=check:LowMACA.install-out.txt --library=/Library/Frameworks/R.framework/Versions/Current/Resources/library --no-vignettes --timings LowMACA_1.12.0.tar.gz
###
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* using log directory ‘/Users/biocbuild/bbs-3.7-bioc/meat/LowMACA.Rcheck’
* using R version 3.5.1 Patched (2018-07-12 r74967)
* using platform: x86_64-apple-darwin15.6.0 (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘LowMACA/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘LowMACA’ version ‘1.12.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘LowMACA’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU or elapsed time > 5s
user system elapsed
allPfamAnalysis 169.957 4.976 176.566
lfmSingleSequence 90.775 2.160 93.763
setup 25.116 44.231 187.208
alignSequences 17.750 45.305 48.084
LowMACA-class 12.944 1.824 84.709
LowMACA-package 10.201 1.113 49.612
lmPlotSingleSequence 5.905 0.916 7.082
getMutations 1.529 0.109 20.305
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: OK
LowMACA.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD INSTALL LowMACA ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/3.5/Resources/library’ * installing *source* package ‘LowMACA’ ... ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded Checking if clustalo is in the PATH... Checking clustalo Version... Checking perl installation... Checking perl modules XML::Simple and LWP... * DONE (LowMACA)
LowMACA.Rcheck/LowMACA-Ex.timings
| name | user | system | elapsed | |
| BLOSUM62 | 0.012 | 0.003 | 0.016 | |
| LowMACA-class | 12.944 | 1.824 | 84.709 | |
| LowMACA-package | 10.201 | 1.113 | 49.612 | |
| LowMACA_AML | 0.038 | 0.008 | 0.046 | |
| alignSequences | 17.750 | 45.305 | 48.084 | |
| allPfamAnalysis | 169.957 | 4.976 | 176.566 | |
| bpAll | 1.291 | 0.045 | 1.364 | |
| entropy | 1.357 | 0.057 | 1.430 | |
| getMutations | 1.529 | 0.109 | 20.305 | |
| lfm | 1.836 | 0.070 | 1.915 | |
| lfmSingleSequence | 90.775 | 2.160 | 93.763 | |
| lmAlignment | 0.158 | 0.014 | 0.173 | |
| lmEntropy | 1.168 | 0.040 | 1.220 | |
| lmMutations | 0.041 | 0.005 | 0.047 | |
| lmObj | 0.110 | 0.008 | 0.119 | |
| lmParams | 0.715 | 0.043 | 0.765 | |
| lmPlot | 1.691 | 0.043 | 1.753 | |
| lmPlotSingleSequence | 5.905 | 0.916 | 7.082 | |
| mapMutations | 0.624 | 0.009 | 0.637 | |
| newLowMACA | 3.360 | 0.079 | 3.469 | |
| nullProfile | 1.223 | 0.037 | 1.272 | |
| parallelize | 0.654 | 0.022 | 0.682 | |
| protter | 1.232 | 0.045 | 3.750 | |
| setup | 25.116 | 44.231 | 187.208 | |
| showTumorType | 0.068 | 0.018 | 0.688 | |