| Back to Multiple platform build/check report for BioC 3.7 |
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This page was generated on 2018-10-17 08:33:46 -0400 (Wed, 17 Oct 2018).
| Package 577/1561 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| GeneSelector 2.30.0 Martin Slawski
| malbec2 | Linux (Ubuntu 16.04.1 LTS) / x86_64 | ERROR | ERROR | skipped | |||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | [ OK ] | |||||||
| merida2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK |
| Package: GeneSelector |
| Version: 2.30.0 |
| Command: rm -rf GeneSelector.buildbin-libdir && mkdir GeneSelector.buildbin-libdir && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=GeneSelector.buildbin-libdir GeneSelector_2.30.0.tar.gz |
| StartedAt: 2018-10-17 06:22:32 -0400 (Wed, 17 Oct 2018) |
| EndedAt: 2018-10-17 06:22:52 -0400 (Wed, 17 Oct 2018) |
| EllapsedTime: 20.4 seconds |
| RetCode: 0 |
| Status: OK |
| PackageFile: GeneSelector_2.30.0.zip |
| PackageFileSize: 1.078 MiB |
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### Running command:
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### rm -rf GeneSelector.buildbin-libdir && mkdir GeneSelector.buildbin-libdir && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=GeneSelector.buildbin-libdir GeneSelector_2.30.0.tar.gz
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install for i386
* installing *source* package 'GeneSelector' ...
** libs
C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I"C:/extsoft/include" -O3 -Wall -std=gnu99 -mtune=generic -c kendall.c -o kendall.o
kendall.c: In function 'kendall':
kendall.c:6:14: warning: 'tau' may be used uninitialized in this function [-Wmaybe-uninitialized]
tau = tau + w[i] * w[j] * (((r[i] - r[j]) * (rprime[i] - rprime[j])) < 0);
^
C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I"C:/extsoft/include" -O3 -Wall -std=gnu99 -mtune=generic -c mcfour.c -o mcfour.o
C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I"C:/extsoft/include" -O3 -Wall -std=gnu99 -mtune=generic -c mct.c -o mct.o
C:/Rtools/mingw_32/bin/gcc -shared -s -static-libgcc -o GeneSelector.dll tmp.def kendall.o mcfour.o mct.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.7-bioc/meat/GeneSelector.buildbin-libdir/GeneSelector/libs/i386
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'GeneSelector'
finding HTML links ... done
AggregateMC html
AggregatePenalty html
AggregateSVD html
AggregateSimple html
AggregatedRanking-class html
BootMatrix-class html
FoldMatrix-class html
GeneRanking-class html
GeneSelector-package html
GeneSelector html
GeneSelectorOutput-class html
GenerateBootMatrix html
GenerateFoldMatrix html
GetStabilityDistance html
GetStabilityOverlap html
GetStabilityUnion html
HeatmapRankings html
MergeMethods html
RankingBaldiLong html
RankingEbam html
RankingFC html
RankingFoxDimmic html
RankingLimma html
RankingPermutation html
RankingSam html
RankingShrinkageT html
RankingSoftthresholdT html
RankingTstat html
RankingWelchT html
RankingWilcEbam html
RankingWilcoxon html
RepeatRanking html
RepeatedRanking-class html
StabilityDistance-class html
StabilityOverlap-class html
StabilityUnion-class html
dispersion,RepeatedRanking html
internals html
samplingcontrol html
toplist-methods html
toydata html
** building package indices
** installing vignettes
** testing if installed package can be loaded
In R CMD INSTALL
install for x64
* installing *source* package 'GeneSelector' ...
** libs
C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mtune=generic -c kendall.c -o kendall.o
kendall.c: In function 'kendall':
kendall.c:6:14: warning: 'tau' may be used uninitialized in this function [-Wmaybe-uninitialized]
tau = tau + w[i] * w[j] * (((r[i] - r[j]) * (rprime[i] - rprime[j])) < 0);
^
C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mtune=generic -c mcfour.c -o mcfour.o
C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mtune=generic -c mct.c -o mct.o
C:/Rtools/mingw_64/bin/gcc -shared -s -static-libgcc -o GeneSelector.dll tmp.def kendall.o mcfour.o mct.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.7-bioc/meat/GeneSelector.buildbin-libdir/GeneSelector/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'GeneSelector' as GeneSelector_2.30.0.zip
* DONE (GeneSelector)
In R CMD INSTALL
In R CMD INSTALL