Kevin Rue-Albrecht
| Snapshot Date: 2018-10-15 16:45:08 -0400 (Mon, 15 Oct 2018) |
| URL: https://git.bioconductor.org/packages/GOexpress |
| Branch: RELEASE_3_7 |
| Last Commit: 713a65e |
| Last Changed Date: 2018-04-30 10:35:34 -0400 (Mon, 30 Apr 2018) |
| Back to Multiple platform build/check report for BioC 3.7 |
|
This page was generated on 2018-10-17 08:39:15 -0400 (Wed, 17 Oct 2018).
| Package 626/1561 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| GOexpress 1.14.0 Kevin Rue-Albrecht
| malbec2 | Linux (Ubuntu 16.04.1 LTS) / x86_64 | OK | OK | OK | | ||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | [ OK ] | OK | WARNINGS | OK | | ||||||
| merida2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK | |
| Package: GOexpress |
| Version: 1.14.0 |
| Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.7/bioc/src/contrib/GOexpress_1.14.0.tar.gz && rm -rf GOexpress.buildbin-libdir && mkdir GOexpress.buildbin-libdir && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=GOexpress.buildbin-libdir GOexpress_1.14.0.tar.gz && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL GOexpress_1.14.0.zip && rm GOexpress_1.14.0.tar.gz GOexpress_1.14.0.zip |
| StartedAt: 2018-10-16 19:28:11 -0400 (Tue, 16 Oct 2018) |
| EndedAt: 2018-10-16 19:29:12 -0400 (Tue, 16 Oct 2018) |
| EllapsedTime: 60.8 seconds |
| RetCode: 0 |
| Status: OK |
##############################################################################
##############################################################################
###
### Running command:
###
### C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.7/bioc/src/contrib/GOexpress_1.14.0.tar.gz && rm -rf GOexpress.buildbin-libdir && mkdir GOexpress.buildbin-libdir && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=GOexpress.buildbin-libdir GOexpress_1.14.0.tar.gz && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL GOexpress_1.14.0.zip && rm GOexpress_1.14.0.tar.gz GOexpress_1.14.0.zip
###
##############################################################################
##############################################################################
% Total % Received % Xferd Average Speed Time Time Time Current
Dload Upload Total Spent Left Speed
0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0
100 1951k 100 1951k 0 0 21.0M 0 --:--:-- --:--:-- --:--:-- 22.9M
install for i386
* installing *source* package 'GOexpress' ...
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'GOexpress'
finding HTML links ... done
AlvMac html
AlvMac_GOgenes html
AlvMac_allGO html
AlvMac_allgenes html
AlvMac_results html
AlvMac_results.pVal html
GO_analyse html
GOexpress-package html
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpmY4Jdx/R.INSTALLe00144b136e/GOexpress/man/GOexpress-package.Rd:100: file link 'Biobase' in package 'Biobase' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpmY4Jdx/R.INSTALLe00144b136e/GOexpress/man/GOexpress-package.Rd:102: file link 'RColorBrewer' in package 'RColorBrewer' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpmY4Jdx/R.INSTALLe00144b136e/GOexpress/man/GOexpress-package.Rd:103: file link 'VennDiagram' in package 'VennDiagram' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpmY4Jdx/R.INSTALLe00144b136e/GOexpress/man/GOexpress-package.Rd:109: file link 'bluered' in package 'gplots' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpmY4Jdx/R.INSTALLe00144b136e/GOexpress/man/GOexpress-package.Rd:110: file link 'greenred' in package 'gplots' does not exist and so has been treated as a topic
cluster_GO html
expression_plot html
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpmY4Jdx/R.INSTALLe00144b136e/GOexpress/man/expression_plot.Rd:140: file link 'Biobase' in package 'Biobase' does not exist and so has been treated as a topic
expression_plot_symbol html
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpmY4Jdx/R.INSTALLe00144b136e/GOexpress/man/expression_plot_symbol.Rd:152: file link 'Biobase' in package 'Biobase' does not exist and so has been treated as a topic
expression_profiles html
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpmY4Jdx/R.INSTALLe00144b136e/GOexpress/man/expression_profiles.Rd:154: file link 'Biobase' in package 'Biobase' does not exist and so has been treated as a topic
expression_profiles_symbol html
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpmY4Jdx/R.INSTALLe00144b136e/GOexpress/man/expression_profiles_symbol.Rd:161: file link 'Biobase' in package 'Biobase' does not exist and so has been treated as a topic
heatmap_GO html
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpmY4Jdx/R.INSTALLe00144b136e/GOexpress/man/heatmap_GO.Rd:139: file link 'brewer.pal.info' in package 'RColorBrewer' does not exist and so has been treated as a topic
hist_scores html
list_genes html
microarray2dataset html
pValue_GO html
plot_design html
prefix2dataset html
quantiles_scores html
rerank html
subEset html
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpmY4Jdx/R.INSTALLe00144b136e/GOexpress/man/subEset.Rd:46: file link 'ExpressionSet' in package 'Biobase' does not exist and so has been treated as a topic
subset_scores html
table_genes html
** building package indices
** installing vignettes
** testing if installed package can be loaded
In R CMD INSTALL
install for x64
* installing *source* package 'GOexpress' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'GOexpress' as GOexpress_1.14.0.zip
* DONE (GOexpress)
In R CMD INSTALL
In R CMD INSTALL
* installing to library 'C:/Users/biocbuild/bbs-3.7-bioc/R/library'
package 'GOexpress' successfully unpacked and MD5 sums checked
In R CMD INSTALL