Jonathon Hill
| Snapshot Date: 2018-04-11 16:45:18 -0400 (Wed, 11 Apr 2018) |
| URL: https://git.bioconductor.org/packages/sangerseqR |
| Branch: RELEASE_3_6 |
| Last Commit: 8b87bbc |
| Last Changed Date: 2017-10-30 12:40:12 -0400 (Mon, 30 Oct 2017) |
| Back to Multiple platform build/check report for BioC 3.6 |
|
This page was generated on 2018-04-12 13:23:50 -0400 (Thu, 12 Apr 2018).
| Package 1245/1472 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| sangerseqR 1.14.0 Jonathon Hill
| malbec1 | Linux (Ubuntu 16.04.1 LTS) / x86_64 | OK | OK | OK | | ||||||
| tokay1 | Windows Server 2012 R2 Standard / x64 | [ OK ] | OK | WARNINGS | OK | | ||||||
| veracruz1 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK | |
| Package: sangerseqR |
| Version: 1.14.0 |
| Command: rm -rf sangerseqR.buildbin-libdir && mkdir sangerseqR.buildbin-libdir && C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.6/bioc/src/contrib/sangerseqR_1.14.0.tar.gz && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL --build --library=sangerseqR.buildbin-libdir --merge-multiarch sangerseqR_1.14.0.tar.gz && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL sangerseqR_1.14.0.zip && rm sangerseqR_1.14.0.tar.gz sangerseqR_1.14.0.zip |
| StartedAt: 2018-04-11 18:34:27 -0400 (Wed, 11 Apr 2018) |
| EndedAt: 2018-04-11 18:35:30 -0400 (Wed, 11 Apr 2018) |
| EllapsedTime: 63.3 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### rm -rf sangerseqR.buildbin-libdir && mkdir sangerseqR.buildbin-libdir && C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.6/bioc/src/contrib/sangerseqR_1.14.0.tar.gz && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL --build --library=sangerseqR.buildbin-libdir --merge-multiarch sangerseqR_1.14.0.tar.gz && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL sangerseqR_1.14.0.zip && rm sangerseqR_1.14.0.tar.gz sangerseqR_1.14.0.zip
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install for i386
* installing *source* package 'sangerseqR' ...
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
converting help for package 'sangerseqR'
finding HTML links ... done
PolyPeakParser html
abif-class html
chromatogram html
makeBaseCalls html
read.abif html
read.scf html
readsangerseq html
sangerseq-class html
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpEx9KPn/R.INSTALL16f4484a1d/sangerseqR/man/sangerseq-class.Rd:36: missing file link 'DNAString'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpEx9KPn/R.INSTALL16f4484a1d/sangerseqR/man/sangerseq-class.Rd:39: missing file link 'DNAString'
sangerseqAccessors html
finding level-2 HTML links ... done
sangerseqR-package html
scf-class html
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpEx9KPn/R.INSTALL16f4484a1d/sangerseqR/man/scf-class.Rd:28: missing file link 'DNAString'
setAllelePhase html
** building package indices
** installing vignettes
** testing if installed package can be loaded
In R CMD INSTALL
install for x64
* installing *source* package 'sangerseqR' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'sangerseqR' as sangerseqR_1.14.0.zip
* DONE (sangerseqR)
In R CMD INSTALL
In R CMD INSTALL
* installing to library 'C:/Users/biocbuild/bbs-3.6-bioc/R/library'
package 'sangerseqR' successfully unpacked and MD5 sums checked
In R CMD INSTALL