Alexis Delabriere
| Snapshot Date: 2018-04-11 16:45:18 -0400 (Wed, 11 Apr 2018) |
| URL: https://git.bioconductor.org/packages/proFIA |
| Branch: RELEASE_3_6 |
| Last Commit: a8ba1be |
| Last Changed Date: 2017-10-30 12:41:23 -0400 (Mon, 30 Oct 2017) |
| Back to Multiple platform build/check report for BioC 3.6 |
|
This page was generated on 2018-04-12 13:29:01 -0400 (Thu, 12 Apr 2018).
| Package 1069/1472 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| proFIA 1.4.0 Alexis Delabriere
| malbec1 | Linux (Ubuntu 16.04.1 LTS) / x86_64 | OK | OK | WARNINGS | | ||||||
| tokay1 | Windows Server 2012 R2 Standard / x64 | [ OK ] | OK | WARNINGS | OK | | ||||||
| veracruz1 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | WARNINGS | OK | |
| Package: proFIA |
| Version: 1.4.0 |
| Command: rm -rf proFIA.buildbin-libdir && mkdir proFIA.buildbin-libdir && C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.6/bioc/src/contrib/proFIA_1.4.0.tar.gz && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL --build --library=proFIA.buildbin-libdir --merge-multiarch proFIA_1.4.0.tar.gz && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL proFIA_1.4.0.zip && rm proFIA_1.4.0.tar.gz proFIA_1.4.0.zip |
| StartedAt: 2018-04-11 18:59:45 -0400 (Wed, 11 Apr 2018) |
| EndedAt: 2018-04-11 19:00:15 -0400 (Wed, 11 Apr 2018) |
| EllapsedTime: 29.5 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### rm -rf proFIA.buildbin-libdir && mkdir proFIA.buildbin-libdir && C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.6/bioc/src/contrib/proFIA_1.4.0.tar.gz && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL --build --library=proFIA.buildbin-libdir --merge-multiarch proFIA_1.4.0.tar.gz && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL proFIA_1.4.0.zip && rm proFIA_1.4.0.tar.gz proFIA_1.4.0.zip
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install for i386
* installing *source* package 'proFIA' ...
** libs
C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/include" -DNDEBUG -I"C:/local323/include" -O3 -Wall -std=gnu99 -mtune=generic -c FIABandsExtractionCentroid.c -o FIABandsExtractionCentroid.o
C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/include" -DNDEBUG -I"C:/local323/include" -O3 -Wall -std=gnu99 -mtune=generic -c UtilFunc.c -o UtilFunc.o
C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/include" -DNDEBUG -I"C:/local323/include" -O3 -Wall -std=gnu99 -mtune=generic -c fastMatchPpm.c -o fastMatchPpm.o
C:/Rtools/mingw_32/bin/g++ -shared -s -static-libgcc -o proFIA.dll tmp.def FIABandsExtractionCentroid.o UtilFunc.o fastMatchPpm.o -LC:/local323/lib/i386 -LC:/local323/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.6-bioc/meat/proFIA.buildbin-libdir/proFIA/libs/i386
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
converting help for package 'proFIA'
finding HTML links ... done
acquisitionDirectory html
analyzeAcquisitionFIA html
determiningInjectionZone html
determiningSizePeak.Geom html
estimateNoiseMS html
exportDataMatrix-proFIAset-method html
exportExpressionSet-proFIAset-method html
exportPeakTable-proFIAset-method html
exportSampleMetadata-proFIAset-method html
exportVariableMetadata-proFIAset-method
html
findBandsFIA html
findFIAsignal html
findMzGroup-proFIAset-method html
getInjectionPeak html
group.FIA-proFIAset-method html
impute.FIA-proFIAset-method html
impute.KNN_TN-proFIAset-method html
impute.randomForest-proFIAset-method html
makeDataMatrix-proFIAset-method html
noiseEstimation-class html
peaksGroup-proFIAset-method html
plot html
plotFlowgrams-proFIAset-method html
plotNoise html
plotRaw-proFIAset-method html
plotSamplePeaks-proFIAset-method html
proFIA-package html
proFIAset-class html
proFIAset html
** building package indices
** installing vignettes
** testing if installed package can be loaded
In R CMD INSTALL
install for x64
* installing *source* package 'proFIA' ...
** libs
C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/include" -DNDEBUG -I"C:/local323/include" -O2 -Wall -std=gnu99 -mtune=generic -c FIABandsExtractionCentroid.c -o FIABandsExtractionCentroid.o
C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/include" -DNDEBUG -I"C:/local323/include" -O2 -Wall -std=gnu99 -mtune=generic -c UtilFunc.c -o UtilFunc.o
C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/include" -DNDEBUG -I"C:/local323/include" -O2 -Wall -std=gnu99 -mtune=generic -c fastMatchPpm.c -o fastMatchPpm.o
C:/Rtools/mingw_64/bin/g++ -shared -s -static-libgcc -o proFIA.dll tmp.def FIABandsExtractionCentroid.o UtilFunc.o fastMatchPpm.o -LC:/local323/lib/x64 -LC:/local323/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.6-bioc/meat/proFIA.buildbin-libdir/proFIA/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'proFIA' as proFIA_1.4.0.zip
* DONE (proFIA)
In R CMD INSTALL
In R CMD INSTALL
* installing to library 'C:/Users/biocbuild/bbs-3.6-bioc/R/library'
package 'proFIA' successfully unpacked and MD5 sums checked
In R CMD INSTALL