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INSTALL report for QDNAseq on tokay1

This page was generated on 2018-04-12 13:23:58 -0400 (Thu, 12 Apr 2018).

Package 1095/1472HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
QDNAseq 1.14.0
Daoud Sie
Snapshot Date: 2018-04-11 16:45:18 -0400 (Wed, 11 Apr 2018)
URL: https://git.bioconductor.org/packages/QDNAseq
Branch: RELEASE_3_6
Last Commit: fb0f343
Last Changed Date: 2017-10-30 12:40:12 -0400 (Mon, 30 Oct 2017)
malbec1 Linux (Ubuntu 16.04.1 LTS) / x86_64  OK  OK  WARNINGS UNNEEDED, same version exists in internal repository
tokay1 Windows Server 2012 R2 Standard / x64 [ OK ] OK  WARNINGS  OK UNNEEDED, same version exists in internal repository
veracruz1 OS X 10.11.6 El Capitan / x86_64  OK  OK  WARNINGS  OK UNNEEDED, same version exists in internal repository

Summary

Package: QDNAseq
Version: 1.14.0
Command: rm -rf QDNAseq.buildbin-libdir && mkdir QDNAseq.buildbin-libdir && C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.6/bioc/src/contrib/QDNAseq_1.14.0.tar.gz && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL --build --library=QDNAseq.buildbin-libdir --merge-multiarch QDNAseq_1.14.0.tar.gz && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL QDNAseq_1.14.0.zip && rm QDNAseq_1.14.0.tar.gz QDNAseq_1.14.0.zip
StartedAt: 2018-04-11 18:43:19 -0400 (Wed, 11 Apr 2018)
EndedAt: 2018-04-11 18:44:39 -0400 (Wed, 11 Apr 2018)
EllapsedTime: 80.3 seconds
RetCode: 0
Status:  OK  

Command output

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###
### Running command:
###
###   rm -rf QDNAseq.buildbin-libdir && mkdir QDNAseq.buildbin-libdir  && C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.6/bioc/src/contrib/QDNAseq_1.14.0.tar.gz && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL --build --library=QDNAseq.buildbin-libdir --merge-multiarch QDNAseq_1.14.0.tar.gz && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL QDNAseq_1.14.0.zip  && rm QDNAseq_1.14.0.tar.gz QDNAseq_1.14.0.zip
###
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install for i386

* installing *source* package 'QDNAseq' ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
  converting help for package 'QDNAseq'
    finding HTML links ... done
    LGG150                                  html  
    QDNAseq-defunct                         html  
    QDNAseq-package                         html  
    QDNAseqCopyNumbers                      html  
    QDNAseqReadCounts                       html  
    QDNAseqSignals                          html  
    addPhenodata                            html  
    applyFilters                            html  
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpsrS422/R.INSTALL11007bbb3d5d/QDNAseq/man/applyFilters.Rd:31: missing file link 'madDiff'
    binReadCounts                           html  
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpsrS422/R.INSTALL11007bbb3d5d/QDNAseq/man/binReadCounts.Rd:28: missing file link 'AnnotatedDataFrame'
    callBins                                html  
    compareToReference                      html  
    correctBins                             html  
    createBins                              html  
    estimateCorrection                      html  
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpsrS422/R.INSTALL11007bbb3d5d/QDNAseq/man/estimateCorrection.Rd:43: missing file link 'madDiff'
    exportBins                              html  
    finding level-2 HTML links ... done

    frequencyPlot                           html  
    getBinAnnotations                       html  
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpsrS422/R.INSTALL11007bbb3d5d/QDNAseq/man/getBinAnnotations.Rd:43: missing file link 'AnnotatedDataFrame'
    highlightFilters                        html  
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpsrS422/R.INSTALL11007bbb3d5d/QDNAseq/man/highlightFilters.Rd:32: missing file link 'madDiff'
    isobarPlot                              html  
    makeCgh                                 html  
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpsrS422/R.INSTALL11007bbb3d5d/QDNAseq/man/makeCgh.Rd:37: missing file link 'cghRaw'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpsrS422/R.INSTALL11007bbb3d5d/QDNAseq/man/makeCgh.Rd:38: missing file link 'cghSeg'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpsrS422/R.INSTALL11007bbb3d5d/QDNAseq/man/makeCgh.Rd:39: missing file link 'cghCall'
    noisePlot                               html  
    normalizeBins                           html  
    normalizeSegmentedBins                  html  
    plot                                    html  
    poolRuns                                html  
    segmentBins                             html  
    smoothOutlierBins                       html  
** building package indices
** installing vignettes
** testing if installed package can be loaded
In R CMD INSTALL

install for x64

* installing *source* package 'QDNAseq' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'QDNAseq' as QDNAseq_1.14.0.zip
* DONE (QDNAseq)
In R CMD INSTALL
In R CMD INSTALL
* installing to library 'C:/Users/biocbuild/bbs-3.6-bioc/R/library'
package 'QDNAseq' successfully unpacked and MD5 sums checked
In R CMD INSTALL