Package: KEGGprofile

Version: 1.20.0

Command: rm -rf KEGGprofile.buildbin-libdir KEGGprofile.Rcheck && mkdir KEGGprofile.buildbin-libdir KEGGprofile.Rcheck && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=KEGGprofile.buildbin-libdir KEGGprofile_1.20.0.tar.gz >KEGGprofile.Rcheck\00install.out 2>&1 && cp KEGGprofile.Rcheck\00install.out KEGGprofile-install.out && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD check --library=KEGGprofile.buildbin-libdir --install="check:KEGGprofile-install.out" --force-multiarch --no-vignettes --timings KEGGprofile_1.20.0.tar.gz

StartedAt: 2018-04-12 00:59:16 -0400 (Thu, 12 Apr 2018)

EndedAt: 2018-04-12 01:02:05 -0400 (Thu, 12 Apr 2018)

EllapsedTime: 169.0 seconds

RetCode: 0

Status:  OK

CheckDir: KEGGprofile.Rcheck

Warnings: 0

##############################################################################
##############################################################################
###
### Running command:
###
###   rm -rf KEGGprofile.buildbin-libdir KEGGprofile.Rcheck && mkdir KEGGprofile.buildbin-libdir KEGGprofile.Rcheck && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=KEGGprofile.buildbin-libdir KEGGprofile_1.20.0.tar.gz >KEGGprofile.Rcheck\00install.out 2>&1 && cp KEGGprofile.Rcheck\00install.out KEGGprofile-install.out  &&  C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD check --library=KEGGprofile.buildbin-libdir --install="check:KEGGprofile-install.out" --force-multiarch --no-vignettes --timings KEGGprofile_1.20.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory 'C:/Users/biocbuild/bbs-3.6-bioc/meat/KEGGprofile.Rcheck'
* using R version 3.4.4 (2018-03-15)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'KEGGprofile/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'KEGGprofile' version '1.20.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'KEGGprofile' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
Examples with CPU or elapsed time > 5s
             user system elapsed
plot_pathway 6.42   0.56    7.02
** running examples for arch 'x64' ... OK
Examples with CPU or elapsed time > 5s
             user system elapsed
plot_pathway 6.93   0.64    7.58
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK

install for i386

* installing *source* package 'KEGGprofile' ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
  converting help for package 'KEGGprofile'
    finding HTML links ... done
    col_by_value                            html  
    convertId                               html  
    download_KEGGfile                       html  
    download_latest_pathway                 html  
    find_enriched_pathway                   html  
    newIdMatrix                             html  
    parse_XMLfile                           html  
    pho_sites_count                         html  
    plot_pathway                            html  
    plot_pathway_cor                        html  
    plot_profile                            html  
    pro_pho_expr                            html  
** building package indices
** installing vignettes
** testing if installed package can be loaded
In R CMD INSTALL

install for x64

* installing *source* package 'KEGGprofile' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'KEGGprofile' as KEGGprofile_1.20.0.zip
* DONE (KEGGprofile)
In R CMD INSTALL
In R CMD INSTALL