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INSTALL report for IVAS on tokay1

This page was generated on 2018-04-12 13:25:40 -0400 (Thu, 12 Apr 2018).

Package 724/1472HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
IVAS 1.98.0
Seonggyun Han
Snapshot Date: 2018-04-11 16:45:18 -0400 (Wed, 11 Apr 2018)
URL: https://git.bioconductor.org/packages/IVAS
Branch: RELEASE_3_6
Last Commit: 91f8348
Last Changed Date: 2017-10-30 12:40:48 -0400 (Mon, 30 Oct 2017)
malbec1 Linux (Ubuntu 16.04.1 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay1 Windows Server 2012 R2 Standard / x64 [ OK ] OK  WARNINGS  OK UNNEEDED, same version exists in internal repository
veracruz1 OS X 10.11.6 El Capitan / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: IVAS
Version: 1.98.0
Command: rm -rf IVAS.buildbin-libdir && mkdir IVAS.buildbin-libdir && C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.6/bioc/src/contrib/IVAS_1.98.0.tar.gz && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL --build --library=IVAS.buildbin-libdir --merge-multiarch IVAS_1.98.0.tar.gz && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL IVAS_1.98.0.zip && rm IVAS_1.98.0.tar.gz IVAS_1.98.0.zip
StartedAt: 2018-04-11 18:49:15 -0400 (Wed, 11 Apr 2018)
EndedAt: 2018-04-11 18:50:06 -0400 (Wed, 11 Apr 2018)
EllapsedTime: 51.3 seconds
RetCode: 0
Status:  OK  

Command output

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###
### Running command:
###
###   rm -rf IVAS.buildbin-libdir && mkdir IVAS.buildbin-libdir  && C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.6/bioc/src/contrib/IVAS_1.98.0.tar.gz && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL --build --library=IVAS.buildbin-libdir --merge-multiarch IVAS_1.98.0.tar.gz && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL IVAS_1.98.0.zip  && rm IVAS_1.98.0.tar.gz IVAS_1.98.0.zip
###
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install for i386

* installing *source* package 'IVAS' ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
  converting help for package 'IVAS'
    finding HTML links ... done
    ASdb-class                              html  
    CalSigSNP                               html  
    IVAS-deprecated                         html  
    IVAS-package                            html  
    MsqtlFinder                             html  
    RatioFromFPKM                           html  
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/Rtmpi0f2sq/R.INSTALL11644f572a5/IVAS/man/RatioFromFPKM.Rd:46: missing file link 'isActiveSeq'
    Splicingfinder                          html  
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/Rtmpi0f2sq/R.INSTALL11644f572a5/IVAS/man/Splicingfinder.Rd:41: missing file link 'isActiveSeq'
    calSignificant                          html  
    chrseparate                             html  
    finding level-2 HTML links ... done

Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/Rtmpi0f2sq/R.INSTALL11644f572a5/IVAS/man/chrseparate.Rd:31: missing file link 'isActiveSeq'
    findAlternative                         html  
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/Rtmpi0f2sq/R.INSTALL11644f572a5/IVAS/man/findAlternative.Rd:44: missing file link 'GRanges'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/Rtmpi0f2sq/R.INSTALL11644f572a5/IVAS/man/findAlternative.Rd:45: missing file link 'IRanges'
    findOversnp                             html  
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/Rtmpi0f2sq/R.INSTALL11644f572a5/IVAS/man/findOversnp.Rd:29: missing file link 'findOverlaps'
    sQTLsFinder                             html  
    sampleexp                               html  
    samplesnp                               html  
    samplesnplocus                          html  
    saveBplot                               html  
    sqtlfinder                              html  
** building package indices
** installing vignettes
** testing if installed package can be loaded
In R CMD INSTALL

install for x64

* installing *source* package 'IVAS' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'IVAS' as IVAS_1.98.0.zip
* DONE (IVAS)
In R CMD INSTALL
In R CMD INSTALL
* installing to library 'C:/Users/biocbuild/bbs-3.6-bioc/R/library'
package 'IVAS' successfully unpacked and MD5 sums checked
In R CMD INSTALL