Guangchuang Yu
| Snapshot Date: 2018-04-11 16:45:18 -0400 (Wed, 11 Apr 2018) |
| URL: https://git.bioconductor.org/packages/DOSE |
| Branch: RELEASE_3_6 |
| Last Commit: dabb70d |
| Last Changed Date: 2017-10-30 12:39:34 -0400 (Mon, 30 Oct 2017) |
| Back to Multiple platform build/check report for BioC 3.6 |
|
This page was generated on 2018-04-12 13:20:55 -0400 (Thu, 12 Apr 2018).
| Package 386/1472 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| DOSE 3.4.0 Guangchuang Yu
| malbec1 | Linux (Ubuntu 16.04.1 LTS) / x86_64 | OK | OK | OK | | ||||||
| tokay1 | Windows Server 2012 R2 Standard / x64 | OK | OK | [ OK ] | OK | | ||||||
| veracruz1 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK | |
| Package: DOSE |
| Version: 3.4.0 |
| Command: rm -rf DOSE.buildbin-libdir DOSE.Rcheck && mkdir DOSE.buildbin-libdir DOSE.Rcheck && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=DOSE.buildbin-libdir DOSE_3.4.0.tar.gz >DOSE.Rcheck\00install.out 2>&1 && cp DOSE.Rcheck\00install.out DOSE-install.out && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD check --library=DOSE.buildbin-libdir --install="check:DOSE-install.out" --force-multiarch --no-vignettes --timings DOSE_3.4.0.tar.gz |
| StartedAt: 2018-04-11 23:37:16 -0400 (Wed, 11 Apr 2018) |
| EndedAt: 2018-04-11 23:40:04 -0400 (Wed, 11 Apr 2018) |
| EllapsedTime: 167.5 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: DOSE.Rcheck |
| Warnings: 0 |
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###
### Running command:
###
### rm -rf DOSE.buildbin-libdir DOSE.Rcheck && mkdir DOSE.buildbin-libdir DOSE.Rcheck && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=DOSE.buildbin-libdir DOSE_3.4.0.tar.gz >DOSE.Rcheck\00install.out 2>&1 && cp DOSE.Rcheck\00install.out DOSE-install.out && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD check --library=DOSE.buildbin-libdir --install="check:DOSE-install.out" --force-multiarch --no-vignettes --timings DOSE_3.4.0.tar.gz
###
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* using log directory 'C:/Users/biocbuild/bbs-3.6-bioc/meat/DOSE.Rcheck'
* using R version 3.4.4 (2018-03-15)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'DOSE/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'DOSE' version '3.4.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'DOSE' can be installed ... OK
* checking installed package size ... NOTE
installed size is 8.4Mb
sub-directories of 1Mb or more:
data 3.0Mb
doc 4.7Mb
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
** running examples for arch 'x64' ... OK
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
** running tests for arch 'i386' ...
Running 'testthat.R'
OK
** running tests for arch 'x64' ...
Running 'testthat.R'
OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: 1 NOTE
See
'C:/Users/biocbuild/bbs-3.6-bioc/meat/DOSE.Rcheck/00check.log'
for details.
DOSE.Rcheck/00install.out
install for i386
* installing *source* package 'DOSE' ...
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'DOSE'
finding HTML links ... done
DOSE-package html
DataSet html
EXTID2NAME html
GSEA_internal html
barplot.enrichResult html
clusterSim html
cnetplot-methods html
cnetplot_internal html
computeIC html
doSim html
dotplot-methods html
enrichDGN html
enrichDGNv html
enrichDO html
enrichMap html
enrichNCG html
enrichResult-class html
enricher_internal html
fortify.enrichResult html
gene2DO html
geneID html
geneInCategory html
geneSim html
gsInfo html
gseDGN html
gseDO html
gseNCG html
gseaResult-class html
gseaplot html
gsfilter html
list2graph html
mclusterSim html
netplot html
plot-methods html
rebuildAnnoData html
reexports html
ridgeplot html
scaleNodeColor html
setReadable html
setting.graph.attributes html
show-methods html
simplot html
summary-methods html
theme_dose html
upsetplot-methods html
** building package indices
** installing vignettes
** testing if installed package can be loaded
In R CMD INSTALL
install for x64
* installing *source* package 'DOSE' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'DOSE' as DOSE_3.4.0.zip
* DONE (DOSE)
In R CMD INSTALL
In R CMD INSTALL
|
DOSE.Rcheck/tests_i386/testthat.Rout
R version 3.4.4 (2018-03-15) -- "Someone to Lean On"
Copyright (C) 2018 The R Foundation for Statistical Computing
Platform: i386-w64-mingw32/i386 (32-bit)
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> library(testthat)
> library(DOSE)
DOSE v3.4.0 For help: https://guangchuangyu.github.io/DOSE
If you use DOSE in published research, please cite:
Guangchuang Yu, Li-Gen Wang, Guang-Rong Yan, Qing-Yu He. DOSE: an R/Bioconductor package for Disease Ontology Semantic and Enrichment analysis. Bioinformatics 2015, 31(4):608-609
>
> test_check("DOSE")
== testthat results ===========================================================
OK: 3 SKIPPED: 0 FAILED: 0
>
>
> proc.time()
user system elapsed
6.62 0.37 7.12
|
DOSE.Rcheck/tests_x64/testthat.Rout
R version 3.4.4 (2018-03-15) -- "Someone to Lean On"
Copyright (C) 2018 The R Foundation for Statistical Computing
Platform: x86_64-w64-mingw32/x64 (64-bit)
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> library(testthat)
> library(DOSE)
DOSE v3.4.0 For help: https://guangchuangyu.github.io/DOSE
If you use DOSE in published research, please cite:
Guangchuang Yu, Li-Gen Wang, Guang-Rong Yan, Qing-Yu He. DOSE: an R/Bioconductor package for Disease Ontology Semantic and Enrichment analysis. Bioinformatics 2015, 31(4):608-609
>
> test_check("DOSE")
== testthat results ===========================================================
OK: 3 SKIPPED: 0 FAILED: 0
>
>
> proc.time()
user system elapsed
5.35 0.17 5.51
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DOSE.Rcheck/examples_i386/DOSE-Ex.timings
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DOSE.Rcheck/examples_x64/DOSE-Ex.timings
|