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This page was generated on 2025-11-13 11:32 -0500 (Thu, 13 Nov 2025).

HostnameOSArch (*)R versionInstalled pkgs
kjohnson3macOS 13.7.7 Venturaarm64R Under development (unstable) (2025-11-04 r88984) -- "Unsuffered Consequences" 4013
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 165/2325HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
benchdamic 1.17.0  (landing page)
Matteo Calgaro
Snapshot Date: 2025-11-12 13:40 -0500 (Wed, 12 Nov 2025)
git_url: https://git.bioconductor.org/packages/benchdamic
git_branch: devel
git_last_commit: 316209e
git_last_commit_date: 2025-10-29 11:13:17 -0500 (Wed, 29 Oct 2025)
kjohnson3macOS 13.7.7 Ventura / arm64  ERROR    ERROR  skippedskipped

BUILD results for benchdamic on kjohnson3

To the developers/maintainers of the benchdamic package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/benchdamic.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: benchdamic
Version: 1.17.0
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data benchdamic
StartedAt: 2025-11-12 15:51:34 -0500 (Wed, 12 Nov 2025)
EndedAt: 2025-11-12 15:51:35 -0500 (Wed, 12 Nov 2025)
EllapsedTime: 1.0 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

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### Running command:
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###   /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data benchdamic
###
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* checking for file ‘benchdamic/DESCRIPTION’ ... OK
* preparing ‘benchdamic’:
* checking DESCRIPTION meta-information ... OK
* installing the package (it is needed to build vignettes)
      -----------------------------------
ERROR: dependencies ‘phyloseq’, ‘zinbwave’, ‘edgeR’, ‘microbiome’, ‘Maaslin2’ are not available for package ‘benchdamic’
Perhaps try a variation of:
install.packages(c('phyloseq', 'zinbwave', 'edgeR', 'microbiome', 'Maaslin2'))
* removing ‘/private/var/folders/r0/l4fjk6cj5xj0j3brt4bplpl40000gt/T/RtmptRCCa5/Rinst119492c426d5d/benchdamic’
      -----------------------------------
ERROR: package installation failed