| Back to Multiple platform build/check report for BioC 3.23: simplified long |
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This page was generated on 2026-03-19 11:34 -0400 (Thu, 19 Mar 2026).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 24.04.3 LTS) | x86_64 | R Under development (unstable) (2026-03-05 r89546) -- "Unsuffered Consequences" | 4858 |
| kjohnson3 | macOS 13.7.7 Ventura | arm64 | R Under development (unstable) (2026-03-01 r89506) -- "Unsuffered Consequences" | 4060 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 1004/2368 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| HiSpaR 0.99.5 (landing page) Yingcheng Luo
| nebbiolo1 | Linux (Ubuntu 24.04.3 LTS) / x86_64 | OK | OK | ERROR | |||||||||
| kjohnson3 | macOS 13.7.7 Ventura / arm64 | ERROR | ERROR | skipped | skipped | |||||||||
| See other builds for HiSpaR in R Universe. | ||||||||||||||
|
To the developers/maintainers of the HiSpaR package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/HiSpaR.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: HiSpaR |
| Version: 0.99.5 |
| Command: /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL HiSpaR |
| StartedAt: 2026-03-18 15:15:09 -0400 (Wed, 18 Mar 2026) |
| EndedAt: 2026-03-18 15:15:13 -0400 (Wed, 18 Mar 2026) |
| EllapsedTime: 3.8 seconds |
| RetCode: 1 |
| Status: ERROR |
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### Running command:
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### /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL HiSpaR
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* installing to library ‘/Library/Frameworks/R.framework/Versions/4.6/Resources/library’
* installing *source* package ‘HiSpaR’ ...
** this is package ‘HiSpaR’ version ‘0.99.5’
** using staged installation
Configuring HiSpaR for platform: Darwin
Detected macOS
Homebrew prefix: /opt/homebrew
WARNING: libomp not found. Install with: brew install libomp
WARNING: Armadillo not found. Install with: brew install armadillo
Checking for OpenMP support...
OpenMP support: NO
WARNING: OpenMP is required for HiSpaR. Package may not function correctly.
Writing src/Makevars
Configuration complete
** libs
specified C++17
using C++ compiler: ‘Apple clang version 16.0.0 (clang-1600.0.26.6)’
using C++17
using SDK: ‘MacOSX14.5.sdk’
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I../inst/include -I'/Library/Frameworks/R.framework/Versions/4.6/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.6/Resources/library/RcppArmadillo/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c RcppExports.cpp -o RcppExports.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I../inst/include -I'/Library/Frameworks/R.framework/Versions/4.6/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.6/Resources/library/RcppArmadillo/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c chromosome.cpp -o chromosome.o
In file included from chromosome.cpp:4:
../inst/include/chromosome.h:18:10: fatal error: 'omp.h' file not found
18 | #include <omp.h> // For OpenMP
| ^~~~~~~
1 error generated.
make: *** [chromosome.o] Error 1
ERROR: compilation failed for package ‘HiSpaR’
* removing ‘/Library/Frameworks/R.framework/Versions/4.6/Resources/library/HiSpaR’