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This page was generated on 2026-03-19 11:34 -0400 (Thu, 19 Mar 2026).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 24.04.3 LTS)x86_64R Under development (unstable) (2026-03-05 r89546) -- "Unsuffered Consequences" 4858
kjohnson3macOS 13.7.7 Venturaarm64R Under development (unstable) (2026-03-01 r89506) -- "Unsuffered Consequences" 4060
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 1004/2368HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
HiSpaR 0.99.5  (landing page)
Yingcheng Luo
Snapshot Date: 2026-03-18 13:40 -0400 (Wed, 18 Mar 2026)
git_url: https://git.bioconductor.org/packages/HiSpaR
git_branch: devel
git_last_commit: 11f59c8
git_last_commit_date: 2026-03-15 12:30:18 -0400 (Sun, 15 Mar 2026)
nebbiolo1Linux (Ubuntu 24.04.3 LTS) / x86_64  OK    OK    ERROR  
kjohnson3macOS 13.7.7 Ventura / arm64  ERROR    ERROR  skippedskipped
See other builds for HiSpaR in R Universe.

BUILD results for HiSpaR on kjohnson3

To the developers/maintainers of the HiSpaR package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/HiSpaR.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: HiSpaR
Version: 0.99.5
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data HiSpaR
StartedAt: 2026-03-18 16:15:55 -0400 (Wed, 18 Mar 2026)
EndedAt: 2026-03-18 16:16:00 -0400 (Wed, 18 Mar 2026)
EllapsedTime: 5.1 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

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### Running command:
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###   /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data HiSpaR
###
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* checking for file ‘HiSpaR/DESCRIPTION’ ... OK
* preparing ‘HiSpaR’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* running ‘cleanup’
* installing the package (it is needed to build vignettes)
      -----------------------------------
* installing *source* package ‘HiSpaR’ ...
** this is package ‘HiSpaR’ version ‘0.99.5’
** using staged installation
Configuring HiSpaR for platform: Darwin
  Detected macOS
  Homebrew prefix: /opt/homebrew
  WARNING: libomp not found. Install with: brew install libomp
  WARNING: Armadillo not found. Install with: brew install armadillo
Checking for OpenMP support...
  OpenMP support: NO
  WARNING: OpenMP is required for HiSpaR. Package may not function correctly.
Writing src/Makevars
Configuration complete
** libs
specified C++17
using C++ compiler: ‘Apple clang version 16.0.0 (clang-1600.0.26.6)’
using C++17
using SDK: ‘MacOSX14.5.sdk’
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I../inst/include -I'/Library/Frameworks/R.framework/Versions/4.6/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.6/Resources/library/RcppArmadillo/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c RcppExports.cpp -o RcppExports.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I../inst/include -I'/Library/Frameworks/R.framework/Versions/4.6/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.6/Resources/library/RcppArmadillo/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c chromosome.cpp -o chromosome.o
In file included from chromosome.cpp:4:
../inst/include/chromosome.h:18:10: fatal error: 'omp.h' file not found
   18 | #include <omp.h> // For OpenMP
      |          ^~~~~~~
1 error generated.
make: *** [chromosome.o] Error 1
ERROR: compilation failed for package ‘HiSpaR’
* removing ‘/private/var/folders/r0/l4fjk6cj5xj0j3brt4bplpl40000gt/T/RtmpBNWtnM/Rinst52d574e39fe2/HiSpaR’
      -----------------------------------
ERROR: package installation failed