| Back to Multiple platform build/check report for BioC 3.23: simplified long |
|
This page was generated on 2026-03-04 11:35 -0500 (Wed, 04 Mar 2026).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 24.04.3 LTS) | x86_64 | R Under development (unstable) (2026-01-15 r89304) -- "Unsuffered Consequences" | 4882 |
| kjohnson3 | macOS 13.7.7 Ventura | arm64 | R Under development (unstable) (2026-01-15 r89304) -- "Unsuffered Consequences" | 4574 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 1007/2357 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| HPiP 1.17.2 (landing page) Matineh Rahmatbakhsh
| nebbiolo1 | Linux (Ubuntu 24.04.3 LTS) / x86_64 | OK | OK | OK | |||||||||
| kjohnson3 | macOS 13.7.7 Ventura / arm64 | OK | OK | OK | OK | |||||||||
| See other builds for HPiP in R Universe. | ||||||||||||||
|
To the developers/maintainers of the HPiP package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/HPiP.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: HPiP |
| Version: 1.17.2 |
| Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:HPiP.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings HPiP_1.17.2.tar.gz |
| StartedAt: 2026-03-03 20:20:12 -0500 (Tue, 03 Mar 2026) |
| EndedAt: 2026-03-03 20:23:41 -0500 (Tue, 03 Mar 2026) |
| EllapsedTime: 208.8 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: HPiP.Rcheck |
| Warnings: 0 |
##############################################################################
##############################################################################
###
### Running command:
###
### /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:HPiP.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings HPiP_1.17.2.tar.gz
###
##############################################################################
##############################################################################
* using log directory ‘/Users/biocbuild/bbs-3.23-bioc/meat/HPiP.Rcheck’
* using R Under development (unstable) (2026-01-15 r89304)
* using platform: aarch64-apple-darwin20
* R was compiled by
Apple clang version 16.0.0 (clang-1600.0.26.6)
GNU Fortran (GCC) 14.2.0
* running under: macOS Sonoma 14.8.3
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘HPiP/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘HPiP’ version ‘1.17.2’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘HPiP’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... NOTE
License stub is invalid DCF.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... NOTE
checkRd: (-1) getHPI.Rd:29: Lost braces
29 | then the Kronecker product is the code{(pm × qn)} block matrix
| ^
* checking Rd metadata ... OK
* checking Rd cross-references ... INFO
Package unavailable to check Rd xrefs: ‘ftrCOOL’
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking R/sysdata.rda ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
FSmethod 19.185 0.938 21.217
corr_plot 18.974 0.941 20.695
var_imp 18.602 1.037 20.791
pred_ensembel 6.570 0.119 6.280
enrichfindP 0.204 0.039 12.503
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
Running ‘runTests.R’
OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: 2 NOTEs
See
‘/Users/biocbuild/bbs-3.23-bioc/meat/HPiP.Rcheck/00check.log’
for details.
HPiP.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL HPiP ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/4.6-arm64/Resources/library’ * installing *source* package ‘HPiP’ ... ** this is package ‘HPiP’ version ‘1.17.2’ ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (HPiP)
HPiP.Rcheck/tests/runTests.Rout
R Under development (unstable) (2026-01-15 r89304) -- "Unsuffered Consequences"
Copyright (C) 2026 The R Foundation for Statistical Computing
Platform: aarch64-apple-darwin20
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> BiocGenerics:::testPackage('HPiP')
No results to show
Please make sure that the organism is correct or set significant = FALSE
No results to show
Please make sure that the organism is correct or set significant = FALSE
No results to show
Please make sure that the organism is correct or set significant = FALSE
No results to show
Please make sure that the organism is correct or set significant = FALSE
No results to show
Please make sure that the organism is correct or set significant = FALSE
No results to show
Please make sure that the organism is correct or set significant = FALSE
No results to show
Please make sure that the organism is correct or set significant = FALSE
avNNet
Loading required package: ggplot2
Loading required package: lattice
Fitting Repeat 1
# weights: 103
initial value 95.613701
final value 94.052910
converged
Fitting Repeat 2
# weights: 103
initial value 106.891737
final value 94.052910
converged
Fitting Repeat 3
# weights: 103
initial value 101.281044
iter 10 value 93.946239
final value 93.946237
converged
Fitting Repeat 4
# weights: 103
initial value 101.285316
final value 94.052910
converged
Fitting Repeat 5
# weights: 103
initial value 98.319254
final value 94.052910
converged
Fitting Repeat 1
# weights: 305
initial value 94.617735
final value 94.052910
converged
Fitting Repeat 2
# weights: 305
initial value 105.635918
final value 94.052910
converged
Fitting Repeat 3
# weights: 305
initial value 109.235618
iter 10 value 93.946241
final value 93.946237
converged
Fitting Repeat 4
# weights: 305
initial value 99.560114
final value 94.052911
converged
Fitting Repeat 5
# weights: 305
initial value 99.404930
iter 10 value 93.946247
final value 93.946237
converged
Fitting Repeat 1
# weights: 507
initial value 105.957907
final value 91.824176
converged
Fitting Repeat 2
# weights: 507
initial value 101.993015
iter 10 value 93.983250
final value 93.946237
converged
Fitting Repeat 3
# weights: 507
initial value 95.005099
final value 94.052910
converged
Fitting Repeat 4
# weights: 507
initial value 110.308326
iter 10 value 93.946264
final value 93.946237
converged
Fitting Repeat 5
# weights: 507
initial value 100.370123
final value 94.052910
converged
Fitting Repeat 1
# weights: 103
initial value 96.374796
iter 10 value 94.055687
iter 20 value 93.178521
iter 30 value 86.065650
iter 40 value 84.744730
iter 50 value 83.886072
iter 60 value 83.337499
iter 70 value 83.254805
final value 83.254766
converged
Fitting Repeat 2
# weights: 103
initial value 104.700012
iter 10 value 94.027211
iter 20 value 92.723806
iter 30 value 92.364213
iter 40 value 90.118800
iter 50 value 89.758367
iter 60 value 89.696850
iter 70 value 84.438714
iter 80 value 82.467630
iter 90 value 81.999054
iter 100 value 81.886402
final value 81.886402
stopped after 100 iterations
Fitting Repeat 3
# weights: 103
initial value 98.425449
iter 10 value 93.802394
iter 20 value 86.446143
iter 30 value 84.915022
iter 40 value 84.736684
iter 50 value 84.429468
iter 60 value 83.510180
iter 70 value 83.109059
iter 80 value 82.940831
final value 82.940817
converged
Fitting Repeat 4
# weights: 103
initial value 95.967305
iter 10 value 94.040247
iter 20 value 91.108680
iter 30 value 84.590720
iter 40 value 83.888238
iter 50 value 83.868517
iter 60 value 83.730995
iter 70 value 83.461055
iter 80 value 83.448555
iter 90 value 83.447953
final value 83.447914
converged
Fitting Repeat 5
# weights: 103
initial value 97.342479
iter 10 value 93.954131
iter 20 value 86.825150
iter 30 value 85.866083
iter 40 value 84.899413
iter 50 value 84.713663
iter 60 value 84.558849
iter 70 value 83.619399
iter 80 value 82.951024
iter 90 value 82.940933
final value 82.940824
converged
Fitting Repeat 1
# weights: 305
initial value 145.986896
iter 10 value 93.922759
iter 20 value 91.508888
iter 30 value 85.946274
iter 40 value 84.774108
iter 50 value 84.460841
iter 60 value 83.951022
iter 70 value 83.308722
iter 80 value 82.357304
iter 90 value 81.440060
iter 100 value 80.677174
final value 80.677174
stopped after 100 iterations
Fitting Repeat 2
# weights: 305
initial value 103.034151
iter 10 value 94.075344
iter 20 value 94.035052
iter 30 value 89.098177
iter 40 value 84.915281
iter 50 value 84.324063
iter 60 value 84.038535
iter 70 value 83.758124
iter 80 value 83.545108
iter 90 value 82.928557
iter 100 value 81.017577
final value 81.017577
stopped after 100 iterations
Fitting Repeat 3
# weights: 305
initial value 107.322360
iter 10 value 94.075634
iter 20 value 90.646015
iter 30 value 84.910658
iter 40 value 84.796601
iter 50 value 84.593630
iter 60 value 83.634676
iter 70 value 82.706021
iter 80 value 80.836738
iter 90 value 80.386898
iter 100 value 80.348303
final value 80.348303
stopped after 100 iterations
Fitting Repeat 4
# weights: 305
initial value 110.761848
iter 10 value 93.296156
iter 20 value 88.741188
iter 30 value 85.781636
iter 40 value 83.509873
iter 50 value 82.469632
iter 60 value 81.016025
iter 70 value 80.477611
iter 80 value 80.281124
iter 90 value 80.242347
iter 100 value 80.219842
final value 80.219842
stopped after 100 iterations
Fitting Repeat 5
# weights: 305
initial value 111.809782
iter 10 value 94.072530
iter 20 value 87.321948
iter 30 value 86.873332
iter 40 value 86.199021
iter 50 value 84.352091
iter 60 value 83.853477
iter 70 value 82.581434
iter 80 value 81.260597
iter 90 value 80.904148
iter 100 value 80.511262
final value 80.511262
stopped after 100 iterations
Fitting Repeat 1
# weights: 507
initial value 111.938221
iter 10 value 98.624662
iter 20 value 95.849222
iter 30 value 92.894853
iter 40 value 86.189377
iter 50 value 82.954063
iter 60 value 81.868104
iter 70 value 81.522848
iter 80 value 81.478286
iter 90 value 81.445826
iter 100 value 81.391430
final value 81.391430
stopped after 100 iterations
Fitting Repeat 2
# weights: 507
initial value 114.074945
iter 10 value 93.975030
iter 20 value 90.241167
iter 30 value 86.113265
iter 40 value 83.732299
iter 50 value 82.232469
iter 60 value 81.911357
iter 70 value 81.160292
iter 80 value 80.361189
iter 90 value 80.114014
iter 100 value 79.965523
final value 79.965523
stopped after 100 iterations
Fitting Repeat 3
# weights: 507
initial value 112.716954
iter 10 value 94.159971
iter 20 value 93.861402
iter 30 value 86.487235
iter 40 value 85.712228
iter 50 value 84.345638
iter 60 value 82.384851
iter 70 value 81.878521
iter 80 value 81.644163
iter 90 value 81.011827
iter 100 value 80.748991
final value 80.748991
stopped after 100 iterations
Fitting Repeat 4
# weights: 507
initial value 108.994329
iter 10 value 94.812921
iter 20 value 86.063735
iter 30 value 83.695775
iter 40 value 81.445590
iter 50 value 80.554635
iter 60 value 80.244093
iter 70 value 80.093565
iter 80 value 80.008999
iter 90 value 79.875649
iter 100 value 79.773885
final value 79.773885
stopped after 100 iterations
Fitting Repeat 5
# weights: 507
initial value 109.590183
iter 10 value 91.819602
iter 20 value 84.124258
iter 30 value 82.343241
iter 40 value 81.684823
iter 50 value 81.347287
iter 60 value 80.519007
iter 70 value 80.197978
iter 80 value 80.140304
iter 90 value 80.060811
iter 100 value 80.007781
final value 80.007781
stopped after 100 iterations
Fitting Repeat 1
# weights: 103
initial value 97.801463
final value 94.054278
converged
Fitting Repeat 2
# weights: 103
initial value 95.081840
final value 94.054390
converged
Fitting Repeat 3
# weights: 103
initial value 97.342918
iter 10 value 94.054712
iter 20 value 94.052939
final value 94.052920
converged
Fitting Repeat 4
# weights: 103
initial value 97.616065
final value 94.054666
converged
Fitting Repeat 5
# weights: 103
initial value 105.624195
iter 10 value 93.947883
iter 20 value 93.947192
final value 93.946426
converged
Fitting Repeat 1
# weights: 305
initial value 99.284942
iter 10 value 92.820582
iter 20 value 92.815261
iter 30 value 85.452717
iter 40 value 85.217801
iter 50 value 85.197082
iter 60 value 84.582015
iter 70 value 83.553878
final value 83.433390
converged
Fitting Repeat 2
# weights: 305
initial value 99.977943
iter 10 value 94.057929
iter 20 value 93.958055
final value 93.915836
converged
Fitting Repeat 3
# weights: 305
initial value 96.316586
iter 10 value 93.951198
iter 20 value 93.946814
iter 30 value 85.498379
iter 40 value 81.757187
iter 50 value 81.558982
iter 60 value 81.522751
iter 70 value 81.407262
iter 80 value 80.928014
iter 90 value 80.418526
iter 100 value 79.938103
final value 79.938103
stopped after 100 iterations
Fitting Repeat 4
# weights: 305
initial value 94.224424
iter 10 value 94.055400
iter 20 value 93.651562
iter 30 value 87.082620
iter 40 value 83.586280
iter 50 value 83.553531
iter 60 value 83.504888
iter 70 value 83.451498
iter 80 value 83.417748
iter 90 value 83.224269
iter 100 value 82.809130
final value 82.809130
stopped after 100 iterations
Fitting Repeat 5
# weights: 305
initial value 107.809348
iter 10 value 94.056536
iter 20 value 93.973407
iter 30 value 91.878810
iter 40 value 88.876587
iter 50 value 88.758897
iter 60 value 88.734986
iter 70 value 88.734316
iter 80 value 88.733544
iter 90 value 88.732928
iter 100 value 88.731630
final value 88.731630
stopped after 100 iterations
Fitting Repeat 1
# weights: 507
initial value 103.916078
iter 10 value 93.954291
iter 20 value 93.951937
iter 30 value 93.906341
iter 40 value 91.826194
final value 91.826179
converged
Fitting Repeat 2
# weights: 507
initial value 96.112380
iter 10 value 93.399319
iter 20 value 93.267278
iter 30 value 93.260279
iter 40 value 93.224016
iter 50 value 93.221742
iter 60 value 92.841212
iter 70 value 89.731461
iter 80 value 89.454896
iter 90 value 89.071228
iter 100 value 89.020185
final value 89.020185
stopped after 100 iterations
Fitting Repeat 3
# weights: 507
initial value 98.139065
iter 10 value 94.061168
iter 20 value 93.764821
iter 30 value 91.826684
iter 40 value 91.825841
iter 50 value 91.379238
iter 60 value 90.322198
final value 90.240886
converged
Fitting Repeat 4
# weights: 507
initial value 102.877959
iter 10 value 94.061783
iter 20 value 94.051011
iter 30 value 85.547565
iter 40 value 84.768338
iter 50 value 84.692001
iter 60 value 84.687689
iter 70 value 84.653512
iter 80 value 84.611453
iter 90 value 84.027107
iter 100 value 80.792251
final value 80.792251
stopped after 100 iterations
Fitting Repeat 5
# weights: 507
initial value 110.772960
iter 10 value 94.060925
iter 20 value 94.031153
iter 30 value 87.055650
iter 40 value 86.988342
iter 50 value 86.244806
iter 60 value 84.749855
iter 70 value 84.514954
iter 80 value 84.489362
iter 90 value 84.482529
iter 90 value 84.482528
final value 84.481936
converged
Fitting Repeat 1
# weights: 103
initial value 101.997161
final value 94.480519
converged
Fitting Repeat 2
# weights: 103
initial value 99.419393
final value 94.484211
converged
Fitting Repeat 3
# weights: 103
initial value 110.294702
final value 94.484211
converged
Fitting Repeat 4
# weights: 103
initial value 95.725916
final value 94.484211
converged
Fitting Repeat 5
# weights: 103
initial value 97.701738
final value 94.484211
converged
Fitting Repeat 1
# weights: 305
initial value 103.750059
final value 94.484211
converged
Fitting Repeat 2
# weights: 305
initial value 103.406238
iter 10 value 93.637386
iter 10 value 93.637385
final value 93.637381
converged
Fitting Repeat 3
# weights: 305
initial value 103.805889
iter 10 value 94.497478
iter 20 value 93.046565
iter 30 value 90.471661
iter 40 value 87.081990
iter 50 value 87.061997
final value 87.061743
converged
Fitting Repeat 4
# weights: 305
initial value 100.914460
final value 94.484211
converged
Fitting Repeat 5
# weights: 305
initial value 95.317305
iter 10 value 94.484221
final value 94.484211
converged
Fitting Repeat 1
# weights: 507
initial value 113.814612
final value 93.637379
converged
Fitting Repeat 2
# weights: 507
initial value 114.681438
final value 94.466823
converged
Fitting Repeat 3
# weights: 507
initial value 95.238544
iter 10 value 93.628520
iter 20 value 93.626826
final value 93.626795
converged
Fitting Repeat 4
# weights: 507
initial value 133.117294
iter 10 value 94.484293
final value 94.484211
converged
Fitting Repeat 5
# weights: 507
initial value 97.084308
final value 94.484211
converged
Fitting Repeat 1
# weights: 103
initial value 96.341480
iter 10 value 94.488552
iter 20 value 93.983346
iter 30 value 93.893003
iter 40 value 93.652167
iter 50 value 93.620532
iter 60 value 90.804896
iter 70 value 88.585350
iter 80 value 85.784729
iter 90 value 84.484530
iter 100 value 84.057142
final value 84.057142
stopped after 100 iterations
Fitting Repeat 2
# weights: 103
initial value 102.813612
iter 10 value 94.301342
iter 20 value 89.788327
iter 30 value 87.878448
iter 40 value 84.477760
iter 50 value 84.454879
iter 60 value 83.872898
iter 70 value 82.196977
iter 80 value 81.815998
iter 90 value 81.704132
final value 81.704131
converged
Fitting Repeat 3
# weights: 103
initial value 96.152786
iter 10 value 94.576562
iter 20 value 94.486014
iter 30 value 93.784096
iter 40 value 86.919391
iter 50 value 84.793213
iter 60 value 84.630724
iter 70 value 84.412820
iter 80 value 84.339252
iter 90 value 84.284040
final value 84.284032
converged
Fitting Repeat 4
# weights: 103
initial value 96.715975
iter 10 value 94.493941
iter 20 value 93.871347
iter 30 value 89.243475
iter 40 value 84.396572
iter 50 value 83.718658
iter 60 value 82.634977
iter 70 value 81.733549
iter 80 value 81.704218
final value 81.704131
converged
Fitting Repeat 5
# weights: 103
initial value 101.758495
iter 10 value 94.487948
iter 20 value 93.517464
iter 30 value 93.355246
iter 40 value 89.520180
iter 50 value 86.120060
iter 60 value 85.565305
iter 70 value 85.006135
iter 80 value 84.674304
final value 84.658791
converged
Fitting Repeat 1
# weights: 305
initial value 126.461762
iter 10 value 91.529474
iter 20 value 85.908268
iter 30 value 85.536581
iter 40 value 85.363953
iter 50 value 85.231053
iter 60 value 85.085256
iter 70 value 81.489414
iter 80 value 80.533041
iter 90 value 80.459346
iter 100 value 80.429183
final value 80.429183
stopped after 100 iterations
Fitting Repeat 2
# weights: 305
initial value 102.475499
iter 10 value 95.373638
iter 20 value 88.688905
iter 30 value 87.150963
iter 40 value 86.144935
iter 50 value 85.520777
iter 60 value 84.634625
iter 70 value 84.441651
iter 80 value 83.866704
iter 90 value 81.922074
iter 100 value 81.841768
final value 81.841768
stopped after 100 iterations
Fitting Repeat 3
# weights: 305
initial value 106.060947
iter 10 value 94.494623
iter 20 value 86.473251
iter 30 value 84.463735
iter 40 value 84.018828
iter 50 value 82.844111
iter 60 value 81.967305
iter 70 value 81.856733
iter 80 value 81.678509
iter 90 value 81.130616
iter 100 value 80.657365
final value 80.657365
stopped after 100 iterations
Fitting Repeat 4
# weights: 305
initial value 101.072124
iter 10 value 94.036231
iter 20 value 86.916313
iter 30 value 84.737521
iter 40 value 84.572335
iter 50 value 84.527923
iter 60 value 84.335063
iter 70 value 84.212780
iter 80 value 84.080296
iter 90 value 83.729128
iter 100 value 80.729736
final value 80.729736
stopped after 100 iterations
Fitting Repeat 5
# weights: 305
initial value 100.428154
iter 10 value 94.549169
iter 20 value 90.720006
iter 30 value 87.088195
iter 40 value 84.988553
iter 50 value 84.262987
iter 60 value 84.094998
iter 70 value 83.874975
iter 80 value 82.586171
iter 90 value 81.059561
iter 100 value 80.434010
final value 80.434010
stopped after 100 iterations
Fitting Repeat 1
# weights: 507
initial value 119.873231
iter 10 value 94.497408
iter 20 value 89.162966
iter 30 value 85.633518
iter 40 value 85.354440
iter 50 value 85.018733
iter 60 value 85.004376
iter 70 value 84.711894
iter 80 value 83.172056
iter 90 value 81.834464
iter 100 value 80.909758
final value 80.909758
stopped after 100 iterations
Fitting Repeat 2
# weights: 507
initial value 106.196882
iter 10 value 94.409040
iter 20 value 87.718055
iter 30 value 85.163651
iter 40 value 84.193473
iter 50 value 83.942901
iter 60 value 83.132034
iter 70 value 81.616433
iter 80 value 80.832295
iter 90 value 80.762218
iter 100 value 80.738178
final value 80.738178
stopped after 100 iterations
Fitting Repeat 3
# weights: 507
initial value 115.192417
iter 10 value 94.006740
iter 20 value 88.434291
iter 30 value 84.294604
iter 40 value 83.501125
iter 50 value 82.500203
iter 60 value 80.750239
iter 70 value 80.212315
iter 80 value 80.093411
iter 90 value 80.032805
iter 100 value 79.907258
final value 79.907258
stopped after 100 iterations
Fitting Repeat 4
# weights: 507
initial value 106.818355
iter 10 value 94.958586
iter 20 value 94.081326
iter 30 value 91.805016
iter 40 value 87.502273
iter 50 value 85.654019
iter 60 value 84.219165
iter 70 value 83.064546
iter 80 value 81.108664
iter 90 value 80.613185
iter 100 value 80.360979
final value 80.360979
stopped after 100 iterations
Fitting Repeat 5
# weights: 507
initial value 125.722517
iter 10 value 94.604432
iter 20 value 94.288290
iter 30 value 91.396488
iter 40 value 88.036210
iter 50 value 84.529863
iter 60 value 83.953596
iter 70 value 83.790825
iter 80 value 82.819759
iter 90 value 82.194591
iter 100 value 81.731274
final value 81.731274
stopped after 100 iterations
Fitting Repeat 1
# weights: 103
initial value 102.741263
final value 94.485780
converged
Fitting Repeat 2
# weights: 103
initial value 98.199916
iter 10 value 94.468238
iter 20 value 94.466930
final value 94.466863
converged
Fitting Repeat 3
# weights: 103
initial value 98.096688
final value 94.485705
converged
Fitting Repeat 4
# weights: 103
initial value 95.640529
final value 94.485670
converged
Fitting Repeat 5
# weights: 103
initial value 102.067569
iter 10 value 94.485856
iter 20 value 94.484225
final value 94.484214
converged
Fitting Repeat 1
# weights: 305
initial value 103.557534
iter 10 value 94.488683
iter 20 value 94.396204
iter 30 value 93.617648
iter 40 value 86.879158
iter 50 value 83.869713
iter 60 value 81.736282
iter 70 value 79.647266
iter 80 value 79.542095
iter 90 value 79.541390
final value 79.541122
converged
Fitting Repeat 2
# weights: 305
initial value 98.243674
iter 10 value 94.090839
iter 20 value 94.085203
iter 30 value 94.084363
iter 40 value 93.670264
iter 50 value 86.915624
iter 60 value 86.705706
iter 70 value 86.681132
iter 80 value 83.675897
iter 90 value 81.987284
iter 100 value 81.679948
final value 81.679948
stopped after 100 iterations
Fitting Repeat 3
# weights: 305
initial value 97.430388
iter 10 value 94.414807
iter 20 value 94.248601
iter 30 value 94.091011
iter 40 value 94.089254
iter 50 value 94.017069
iter 60 value 90.310203
iter 70 value 85.193630
iter 80 value 85.005508
final value 85.002559
converged
Fitting Repeat 4
# weights: 305
initial value 110.756801
iter 10 value 94.485231
iter 20 value 94.290619
iter 30 value 93.861133
iter 40 value 92.871386
iter 50 value 92.404799
final value 92.379186
converged
Fitting Repeat 5
# weights: 305
initial value 99.747565
iter 10 value 94.486927
iter 20 value 93.901588
iter 30 value 93.636109
iter 40 value 93.635815
iter 50 value 93.621723
iter 60 value 87.816540
iter 70 value 87.021927
iter 80 value 82.827316
iter 90 value 82.821850
iter 100 value 82.650172
final value 82.650172
stopped after 100 iterations
Fitting Repeat 1
# weights: 507
initial value 122.102716
iter 10 value 94.475379
iter 20 value 94.186962
iter 30 value 93.461812
iter 40 value 93.119880
iter 50 value 92.515275
iter 60 value 83.757131
iter 70 value 81.860940
iter 80 value 81.414267
iter 90 value 81.413989
iter 100 value 81.363425
final value 81.363425
stopped after 100 iterations
Fitting Repeat 2
# weights: 507
initial value 106.185720
iter 10 value 92.954467
iter 20 value 87.705453
iter 30 value 86.654868
iter 40 value 86.650479
iter 50 value 86.638278
iter 60 value 86.634068
iter 70 value 86.484869
final value 86.484377
converged
Fitting Repeat 3
# weights: 507
initial value 102.064089
iter 10 value 94.492247
iter 20 value 94.484348
iter 30 value 93.458646
iter 40 value 89.995393
iter 50 value 83.066688
iter 60 value 82.849444
iter 70 value 82.848264
iter 80 value 82.841643
iter 90 value 82.372792
iter 100 value 81.125821
final value 81.125821
stopped after 100 iterations
Fitting Repeat 4
# weights: 507
initial value 101.223909
iter 10 value 94.474814
iter 20 value 93.008417
iter 30 value 90.342790
iter 40 value 89.156933
iter 50 value 88.360768
iter 60 value 83.181776
iter 70 value 81.769833
iter 80 value 81.730956
iter 90 value 81.728131
final value 81.726941
converged
Fitting Repeat 5
# weights: 507
initial value 104.760505
iter 10 value 94.475131
iter 20 value 94.461117
iter 30 value 84.950937
iter 40 value 83.743544
iter 50 value 83.642212
iter 60 value 83.486561
iter 70 value 83.238043
iter 80 value 83.185696
iter 90 value 83.184295
iter 100 value 83.119688
final value 83.119688
stopped after 100 iterations
Fitting Repeat 1
# weights: 103
initial value 99.844073
final value 94.052910
converged
Fitting Repeat 2
# weights: 103
initial value 95.176419
final value 94.052910
converged
Fitting Repeat 3
# weights: 103
initial value 96.464945
final value 94.052910
converged
Fitting Repeat 4
# weights: 103
initial value 94.227141
final value 94.052910
converged
Fitting Repeat 5
# weights: 103
initial value 103.518899
final value 94.052910
converged
Fitting Repeat 1
# weights: 305
initial value 104.425715
final value 94.052910
converged
Fitting Repeat 2
# weights: 305
initial value 97.271139
final value 94.052910
converged
Fitting Repeat 3
# weights: 305
initial value 107.881174
final value 94.052910
converged
Fitting Repeat 4
# weights: 305
initial value 101.790847
final value 94.052910
converged
Fitting Repeat 5
# weights: 305
initial value 95.816084
final value 94.052910
converged
Fitting Repeat 1
# weights: 507
initial value 96.855366
iter 10 value 89.803503
final value 89.767560
converged
Fitting Repeat 2
# weights: 507
initial value 114.331010
iter 10 value 93.486777
iter 20 value 93.420265
final value 93.420115
converged
Fitting Repeat 3
# weights: 507
initial value 112.298165
final value 94.032967
converged
Fitting Repeat 4
# weights: 507
initial value 102.055091
iter 10 value 93.881872
iter 20 value 93.869772
final value 93.869756
converged
Fitting Repeat 5
# weights: 507
initial value 105.709723
iter 10 value 94.070337
iter 20 value 94.021237
final value 94.020799
converged
Fitting Repeat 1
# weights: 103
initial value 97.224132
iter 10 value 94.047053
iter 20 value 93.119556
iter 30 value 91.599714
iter 40 value 91.109595
iter 50 value 87.069077
iter 60 value 84.862966
iter 70 value 84.434900
iter 80 value 84.298528
iter 90 value 83.970330
iter 100 value 82.417677
final value 82.417677
stopped after 100 iterations
Fitting Repeat 2
# weights: 103
initial value 103.765398
iter 10 value 93.844212
iter 20 value 93.693920
iter 30 value 93.690675
iter 40 value 91.466097
iter 50 value 85.921412
iter 60 value 85.562203
iter 70 value 83.940095
iter 80 value 83.664603
iter 90 value 83.435048
iter 100 value 83.364849
final value 83.364849
stopped after 100 iterations
Fitting Repeat 3
# weights: 103
initial value 97.178314
iter 10 value 94.121394
iter 20 value 94.050604
iter 30 value 84.704408
iter 40 value 83.744833
iter 50 value 83.603977
iter 60 value 83.561490
iter 70 value 83.400412
iter 80 value 83.335446
iter 90 value 83.125160
iter 100 value 82.864564
final value 82.864564
stopped after 100 iterations
Fitting Repeat 4
# weights: 103
initial value 102.608888
iter 10 value 93.888592
iter 20 value 85.109549
iter 30 value 83.576173
iter 40 value 83.371570
iter 50 value 83.325630
iter 60 value 83.197584
iter 70 value 83.102650
iter 80 value 82.596426
iter 90 value 82.443423
iter 100 value 82.436974
final value 82.436974
stopped after 100 iterations
Fitting Repeat 5
# weights: 103
initial value 100.876804
iter 10 value 96.992187
iter 20 value 94.009647
iter 30 value 93.697386
iter 40 value 84.434141
iter 50 value 83.239873
iter 60 value 82.942217
iter 70 value 82.899798
iter 80 value 82.882104
iter 90 value 82.845271
iter 100 value 82.839902
final value 82.839902
stopped after 100 iterations
Fitting Repeat 1
# weights: 305
initial value 111.685711
iter 10 value 94.074980
iter 20 value 92.679078
iter 30 value 86.850765
iter 40 value 85.369335
iter 50 value 84.719185
iter 60 value 82.551942
iter 70 value 82.172995
iter 80 value 81.578928
iter 90 value 81.431026
iter 100 value 81.272146
final value 81.272146
stopped after 100 iterations
Fitting Repeat 2
# weights: 305
initial value 104.177398
iter 10 value 94.675022
iter 20 value 92.353787
iter 30 value 84.485143
iter 40 value 83.967549
iter 50 value 83.442812
iter 60 value 82.972175
iter 70 value 82.821597
iter 80 value 82.643916
iter 90 value 82.589349
iter 100 value 82.439655
final value 82.439655
stopped after 100 iterations
Fitting Repeat 3
# weights: 305
initial value 112.017664
iter 10 value 94.066477
iter 20 value 85.902020
iter 30 value 84.229037
iter 40 value 83.673991
iter 50 value 82.967279
iter 60 value 81.749676
iter 70 value 81.285574
iter 80 value 81.072804
iter 90 value 81.026310
iter 100 value 80.981451
final value 80.981451
stopped after 100 iterations
Fitting Repeat 4
# weights: 305
initial value 104.780403
iter 10 value 94.359724
iter 20 value 91.687862
iter 30 value 86.895879
iter 40 value 83.795523
iter 50 value 83.158625
iter 60 value 83.081041
iter 70 value 82.815877
iter 80 value 82.644096
iter 90 value 82.542414
iter 100 value 82.156316
final value 82.156316
stopped after 100 iterations
Fitting Repeat 5
# weights: 305
initial value 103.501695
iter 10 value 94.081800
iter 20 value 90.363989
iter 30 value 85.545235
iter 40 value 84.353291
iter 50 value 82.896832
iter 60 value 82.618447
iter 70 value 82.600612
iter 80 value 82.549026
iter 90 value 82.535718
iter 100 value 82.522684
final value 82.522684
stopped after 100 iterations
Fitting Repeat 1
# weights: 507
initial value 103.051996
iter 10 value 96.625052
iter 20 value 93.925696
iter 30 value 86.103873
iter 40 value 85.261084
iter 50 value 84.311257
iter 60 value 82.759390
iter 70 value 81.999401
iter 80 value 81.313429
iter 90 value 80.990724
iter 100 value 80.764461
final value 80.764461
stopped after 100 iterations
Fitting Repeat 2
# weights: 507
initial value 107.340335
iter 10 value 93.655697
iter 20 value 91.098075
iter 30 value 89.266314
iter 40 value 86.853985
iter 50 value 84.128483
iter 60 value 82.454835
iter 70 value 81.977999
iter 80 value 81.586030
iter 90 value 81.136979
iter 100 value 80.870188
final value 80.870188
stopped after 100 iterations
Fitting Repeat 3
# weights: 507
initial value 130.974913
iter 10 value 94.413675
iter 20 value 83.558332
iter 30 value 82.484625
iter 40 value 82.352093
iter 50 value 81.867785
iter 60 value 81.518966
iter 70 value 81.377379
iter 80 value 81.153978
iter 90 value 80.901324
iter 100 value 80.872982
final value 80.872982
stopped after 100 iterations
Fitting Repeat 4
# weights: 507
initial value 115.407878
iter 10 value 93.888488
iter 20 value 93.277659
iter 30 value 88.698418
iter 40 value 85.681099
iter 50 value 84.852356
iter 60 value 83.778256
iter 70 value 82.775259
iter 80 value 82.175138
iter 90 value 81.509806
iter 100 value 81.317978
final value 81.317978
stopped after 100 iterations
Fitting Repeat 5
# weights: 507
initial value 126.641509
iter 10 value 92.616635
iter 20 value 88.660510
iter 30 value 87.159668
iter 40 value 84.546467
iter 50 value 83.366849
iter 60 value 82.706599
iter 70 value 82.173386
iter 80 value 81.988137
iter 90 value 81.808865
iter 100 value 81.268619
final value 81.268619
stopped after 100 iterations
Fitting Repeat 1
# weights: 103
initial value 97.338221
final value 94.054461
converged
Fitting Repeat 2
# weights: 103
initial value 95.974027
final value 94.054584
converged
Fitting Repeat 3
# weights: 103
initial value 100.357579
final value 94.054616
converged
Fitting Repeat 4
# weights: 103
initial value 96.944758
final value 94.054460
converged
Fitting Repeat 5
# weights: 103
initial value 103.428929
final value 94.054417
converged
Fitting Repeat 1
# weights: 305
initial value 100.780326
iter 10 value 94.037563
iter 20 value 84.847067
iter 30 value 82.465836
iter 40 value 82.465361
final value 82.464844
converged
Fitting Repeat 2
# weights: 305
initial value 98.362288
iter 10 value 94.057168
iter 20 value 94.039197
iter 30 value 85.067299
iter 40 value 80.687415
iter 50 value 80.624918
iter 60 value 80.622095
iter 70 value 80.619403
iter 80 value 80.333731
iter 90 value 80.211778
iter 100 value 80.204731
final value 80.204731
stopped after 100 iterations
Fitting Repeat 3
# weights: 305
initial value 112.422272
iter 10 value 91.966212
iter 20 value 84.144097
iter 30 value 82.642699
iter 40 value 82.639593
iter 50 value 82.423728
iter 60 value 82.268608
iter 70 value 82.227151
iter 80 value 82.224742
final value 82.222462
converged
Fitting Repeat 4
# weights: 305
initial value 95.053760
iter 10 value 94.058148
iter 20 value 93.924865
iter 30 value 93.658537
iter 40 value 93.658159
iter 50 value 93.657837
iter 60 value 93.653232
iter 70 value 89.230910
iter 80 value 84.068177
iter 90 value 83.397087
iter 100 value 83.392278
final value 83.392278
stopped after 100 iterations
Fitting Repeat 5
# weights: 305
initial value 98.378494
iter 10 value 94.037919
iter 20 value 93.583665
iter 30 value 85.629850
iter 40 value 85.587987
iter 50 value 85.082040
iter 60 value 83.724508
iter 70 value 83.636593
iter 80 value 83.632321
iter 90 value 83.396814
iter 100 value 82.980225
final value 82.980225
stopped after 100 iterations
Fitting Repeat 1
# weights: 507
initial value 101.893800
iter 10 value 94.060238
iter 20 value 93.781781
iter 30 value 86.881934
iter 40 value 84.348458
iter 50 value 82.579173
iter 60 value 82.463193
iter 70 value 82.321102
iter 80 value 82.320531
iter 80 value 82.320531
final value 82.320531
converged
Fitting Repeat 2
# weights: 507
initial value 94.043676
iter 10 value 92.071899
iter 20 value 90.635497
iter 30 value 90.539578
iter 40 value 90.403747
iter 50 value 90.169224
iter 60 value 90.166468
iter 70 value 90.166266
iter 80 value 90.164666
iter 90 value 90.135362
iter 100 value 89.821895
final value 89.821895
stopped after 100 iterations
Fitting Repeat 3
# weights: 507
initial value 93.884574
iter 10 value 93.628495
iter 20 value 93.620693
iter 30 value 83.256395
iter 40 value 82.993557
iter 50 value 82.924193
iter 60 value 81.500047
iter 70 value 81.338987
iter 80 value 81.331307
iter 90 value 81.330442
iter 100 value 81.326700
final value 81.326700
stopped after 100 iterations
Fitting Repeat 4
# weights: 507
initial value 112.962124
iter 10 value 90.750553
iter 20 value 89.995387
iter 30 value 89.993974
iter 40 value 89.781544
iter 50 value 89.772883
iter 60 value 89.695591
iter 70 value 89.638180
iter 80 value 89.638108
final value 89.638095
converged
Fitting Repeat 5
# weights: 507
initial value 94.874906
iter 10 value 94.030022
iter 20 value 89.932929
final value 89.932387
converged
Fitting Repeat 1
# weights: 103
initial value 95.454182
final value 94.484211
converged
Fitting Repeat 2
# weights: 103
initial value 103.626299
final value 94.484211
converged
Fitting Repeat 3
# weights: 103
initial value 96.202794
final value 94.484211
converged
Fitting Repeat 4
# weights: 103
initial value 97.797408
final value 94.354396
converged
Fitting Repeat 5
# weights: 103
initial value 110.190912
final value 94.484211
converged
Fitting Repeat 1
# weights: 305
initial value 100.034235
final value 94.423530
converged
Fitting Repeat 2
# weights: 305
initial value 94.891750
final value 94.354396
converged
Fitting Repeat 3
# weights: 305
initial value 97.067339
final value 94.484211
converged
Fitting Repeat 4
# weights: 305
initial value 97.887238
final value 94.354396
converged
Fitting Repeat 5
# weights: 305
initial value 95.333391
final value 94.354396
converged
Fitting Repeat 1
# weights: 507
initial value 117.428626
final value 94.484211
converged
Fitting Repeat 2
# weights: 507
initial value 108.089166
final value 94.354396
converged
Fitting Repeat 3
# weights: 507
initial value 101.807944
final value 94.350744
converged
Fitting Repeat 4
# weights: 507
initial value 125.589507
iter 10 value 92.043326
iter 20 value 91.855510
final value 91.854060
converged
Fitting Repeat 5
# weights: 507
initial value 118.375319
final value 94.484211
converged
Fitting Repeat 1
# weights: 103
initial value 98.031144
iter 10 value 94.198296
iter 20 value 87.656361
iter 30 value 86.669994
iter 40 value 86.464932
iter 50 value 86.281843
iter 60 value 85.464855
iter 70 value 85.364541
iter 80 value 85.348010
iter 80 value 85.348009
iter 80 value 85.348009
final value 85.348009
converged
Fitting Repeat 2
# weights: 103
initial value 98.036242
iter 10 value 94.487131
iter 20 value 94.354491
iter 30 value 94.186635
iter 40 value 93.719944
iter 50 value 88.764941
iter 60 value 87.697156
iter 70 value 87.052002
iter 80 value 84.709220
iter 90 value 83.492549
iter 100 value 83.273444
final value 83.273444
stopped after 100 iterations
Fitting Repeat 3
# weights: 103
initial value 96.640107
iter 10 value 94.430019
iter 20 value 90.095539
iter 30 value 88.897799
iter 40 value 88.414098
iter 50 value 85.726529
iter 60 value 85.357684
iter 70 value 85.348502
final value 85.348009
converged
Fitting Repeat 4
# weights: 103
initial value 101.241382
iter 10 value 94.523528
iter 20 value 94.247334
iter 30 value 88.930176
iter 40 value 87.444022
iter 50 value 85.144679
iter 60 value 85.011920
iter 70 value 84.975199
iter 80 value 84.973255
final value 84.973251
converged
Fitting Repeat 5
# weights: 103
initial value 100.230388
iter 10 value 94.454301
iter 20 value 89.473665
iter 30 value 88.764731
iter 40 value 86.497854
iter 50 value 86.081027
iter 60 value 85.496159
iter 70 value 85.368033
iter 80 value 85.348011
final value 85.348009
converged
Fitting Repeat 1
# weights: 305
initial value 100.548637
iter 10 value 94.612714
iter 20 value 94.486377
iter 30 value 94.287212
iter 40 value 93.150900
iter 50 value 87.366262
iter 60 value 85.343394
iter 70 value 83.466306
iter 80 value 82.334507
iter 90 value 81.776030
iter 100 value 81.516585
final value 81.516585
stopped after 100 iterations
Fitting Repeat 2
# weights: 305
initial value 103.826540
iter 10 value 94.442240
iter 20 value 89.980007
iter 30 value 88.582986
iter 40 value 85.538522
iter 50 value 84.191688
iter 60 value 83.651175
iter 70 value 83.285955
iter 80 value 82.736302
iter 90 value 82.425271
iter 100 value 82.356079
final value 82.356079
stopped after 100 iterations
Fitting Repeat 3
# weights: 305
initial value 116.448679
iter 10 value 94.522048
iter 20 value 93.003569
iter 30 value 88.353754
iter 40 value 86.353211
iter 50 value 85.257917
iter 60 value 84.694420
iter 70 value 84.224515
iter 80 value 83.977004
iter 90 value 83.108447
iter 100 value 82.800483
final value 82.800483
stopped after 100 iterations
Fitting Repeat 4
# weights: 305
initial value 98.623419
iter 10 value 88.569846
iter 20 value 88.141051
iter 30 value 87.984862
iter 40 value 86.331690
iter 50 value 85.982084
iter 60 value 85.291328
iter 70 value 83.621669
iter 80 value 82.386947
iter 90 value 81.874799
iter 100 value 81.628035
final value 81.628035
stopped after 100 iterations
Fitting Repeat 5
# weights: 305
initial value 109.690522
iter 10 value 94.354990
iter 20 value 86.817920
iter 30 value 86.129134
iter 40 value 85.474016
iter 50 value 84.509394
iter 60 value 83.982774
iter 70 value 83.843292
iter 80 value 83.505031
iter 90 value 82.615859
iter 100 value 82.223242
final value 82.223242
stopped after 100 iterations
Fitting Repeat 1
# weights: 507
initial value 106.420399
iter 10 value 94.774204
iter 20 value 93.948398
iter 30 value 89.293362
iter 40 value 85.121706
iter 50 value 83.851202
iter 60 value 82.833753
iter 70 value 82.436258
iter 80 value 81.843549
iter 90 value 81.632838
iter 100 value 81.569460
final value 81.569460
stopped after 100 iterations
Fitting Repeat 2
# weights: 507
initial value 119.418176
iter 10 value 94.664361
iter 20 value 94.232255
iter 30 value 87.626712
iter 40 value 85.445892
iter 50 value 85.217353
iter 60 value 85.138632
iter 70 value 85.063999
iter 80 value 84.935991
iter 90 value 83.563964
iter 100 value 82.628230
final value 82.628230
stopped after 100 iterations
Fitting Repeat 3
# weights: 507
initial value 109.876034
iter 10 value 94.438386
iter 20 value 94.201202
iter 30 value 94.146380
iter 40 value 89.469868
iter 50 value 86.298205
iter 60 value 86.145248
iter 70 value 84.811467
iter 80 value 82.979470
iter 90 value 82.260044
iter 100 value 81.880849
final value 81.880849
stopped after 100 iterations
Fitting Repeat 4
# weights: 507
initial value 119.675039
iter 10 value 94.891664
iter 20 value 90.520993
iter 30 value 86.633782
iter 40 value 85.838458
iter 50 value 84.474534
iter 60 value 84.058268
iter 70 value 83.343711
iter 80 value 82.277766
iter 90 value 81.802690
iter 100 value 81.729401
final value 81.729401
stopped after 100 iterations
Fitting Repeat 5
# weights: 507
initial value 106.174107
iter 10 value 94.476799
iter 20 value 93.719655
iter 30 value 90.744657
iter 40 value 87.161375
iter 50 value 85.455773
iter 60 value 84.727418
iter 70 value 84.102409
iter 80 value 83.576600
iter 90 value 83.390726
iter 100 value 83.136381
final value 83.136381
stopped after 100 iterations
Fitting Repeat 1
# weights: 103
initial value 109.206193
iter 10 value 94.485897
iter 20 value 94.484228
iter 30 value 92.977025
iter 40 value 92.902399
iter 50 value 92.503482
final value 92.305646
converged
Fitting Repeat 2
# weights: 103
initial value 103.748914
final value 94.485772
converged
Fitting Repeat 3
# weights: 103
initial value 99.427873
final value 94.485805
converged
Fitting Repeat 4
# weights: 103
initial value 97.222861
final value 94.485789
converged
Fitting Repeat 5
# weights: 103
initial value 99.349616
final value 94.486022
converged
Fitting Repeat 1
# weights: 305
initial value 104.652627
iter 10 value 94.212053
iter 20 value 94.149642
iter 30 value 94.146155
iter 40 value 94.142574
iter 50 value 88.555470
iter 60 value 88.373930
final value 88.373855
converged
Fitting Repeat 2
# weights: 305
initial value 102.977121
iter 10 value 94.489126
iter 20 value 94.484396
iter 30 value 94.166288
final value 94.144573
converged
Fitting Repeat 3
# weights: 305
initial value 105.515563
iter 10 value 94.359310
iter 20 value 94.153869
iter 30 value 87.895593
iter 40 value 85.582238
iter 50 value 85.089089
final value 85.089086
converged
Fitting Repeat 4
# weights: 305
initial value 99.842178
iter 10 value 94.487681
iter 20 value 93.733984
iter 30 value 88.682191
iter 40 value 86.179697
iter 50 value 84.872354
iter 60 value 84.245700
iter 70 value 84.149764
iter 80 value 84.148459
iter 90 value 84.147876
iter 100 value 83.190698
final value 83.190698
stopped after 100 iterations
Fitting Repeat 5
# weights: 305
initial value 96.822396
iter 10 value 94.489077
iter 20 value 94.358302
final value 94.354616
converged
Fitting Repeat 1
# weights: 507
initial value 134.165524
iter 10 value 89.329207
iter 20 value 87.292716
iter 30 value 87.282433
iter 40 value 87.277997
iter 50 value 87.271674
iter 60 value 86.904949
iter 70 value 85.251788
iter 80 value 81.021827
iter 90 value 80.613812
iter 100 value 80.600252
final value 80.600252
stopped after 100 iterations
Fitting Repeat 2
# weights: 507
initial value 106.523835
iter 10 value 93.484293
iter 20 value 90.960495
iter 30 value 90.850954
iter 40 value 90.766106
iter 50 value 90.759724
iter 60 value 90.759223
iter 70 value 89.618758
iter 80 value 84.454269
iter 90 value 84.446374
iter 100 value 83.226080
final value 83.226080
stopped after 100 iterations
Fitting Repeat 3
# weights: 507
initial value 105.299551
iter 10 value 94.361656
iter 20 value 94.358591
iter 30 value 94.353789
iter 40 value 94.328595
iter 50 value 93.454998
iter 60 value 89.905496
iter 60 value 89.905496
iter 60 value 89.905496
final value 89.905496
converged
Fitting Repeat 4
# weights: 507
initial value 97.336175
iter 10 value 94.489212
iter 20 value 94.484244
final value 94.484224
converged
Fitting Repeat 5
# weights: 507
initial value 100.155633
iter 10 value 94.492184
iter 20 value 94.430864
iter 30 value 94.142125
final value 94.133069
converged
Fitting Repeat 1
# weights: 103
initial value 99.907290
final value 94.484211
converged
Fitting Repeat 2
# weights: 103
initial value 95.502997
final value 94.484211
converged
Fitting Repeat 3
# weights: 103
initial value 102.884197
final value 94.484211
converged
Fitting Repeat 4
# weights: 103
initial value 100.103423
final value 94.484211
converged
Fitting Repeat 5
# weights: 103
initial value 113.339557
final value 94.484211
converged
Fitting Repeat 1
# weights: 305
initial value 95.877438
final value 94.484211
converged
Fitting Repeat 2
# weights: 305
initial value 103.434843
iter 10 value 93.917688
iter 20 value 93.911782
final value 93.911765
converged
Fitting Repeat 3
# weights: 305
initial value 96.867617
final value 94.312038
converged
Fitting Repeat 4
# weights: 305
initial value 98.149334
iter 10 value 94.467760
iter 20 value 93.906970
iter 30 value 90.341151
iter 40 value 90.340673
final value 90.340649
converged
Fitting Repeat 5
# weights: 305
initial value 97.587454
final value 94.484211
converged
Fitting Repeat 1
# weights: 507
initial value 94.229535
iter 10 value 91.257889
iter 20 value 89.059516
iter 30 value 89.033705
iter 40 value 89.029679
final value 89.029651
converged
Fitting Repeat 2
# weights: 507
initial value 106.688034
iter 10 value 93.791105
final value 93.790476
converged
Fitting Repeat 3
# weights: 507
initial value 101.524169
final value 93.624286
converged
Fitting Repeat 4
# weights: 507
initial value 103.497507
final value 94.484211
converged
Fitting Repeat 5
# weights: 507
initial value 102.090070
final value 94.342058
converged
Fitting Repeat 1
# weights: 103
initial value 99.319406
iter 10 value 94.371359
iter 20 value 93.368475
iter 30 value 93.302700
iter 40 value 92.855519
iter 50 value 88.347171
iter 60 value 87.339897
iter 70 value 82.254488
iter 80 value 81.307663
iter 90 value 81.264856
iter 100 value 81.238300
final value 81.238300
stopped after 100 iterations
Fitting Repeat 2
# weights: 103
initial value 100.455965
iter 10 value 94.424587
iter 20 value 88.679273
iter 30 value 86.907445
iter 40 value 86.452022
iter 50 value 85.158735
iter 60 value 85.120079
iter 70 value 82.553524
iter 80 value 82.297055
iter 90 value 82.275162
iter 90 value 82.275162
iter 90 value 82.275162
final value 82.275162
converged
Fitting Repeat 3
# weights: 103
initial value 97.883548
iter 10 value 94.488495
iter 20 value 94.416173
iter 30 value 93.973511
iter 40 value 92.776363
iter 50 value 83.720252
iter 60 value 82.087635
iter 70 value 81.951061
iter 80 value 81.775708
iter 90 value 80.849660
iter 100 value 79.895026
final value 79.895026
stopped after 100 iterations
Fitting Repeat 4
# weights: 103
initial value 106.624553
iter 10 value 94.492440
iter 20 value 94.441754
iter 30 value 89.162200
iter 40 value 79.197456
iter 50 value 78.629866
iter 60 value 78.293773
iter 70 value 77.463164
iter 80 value 76.872286
iter 90 value 76.380455
iter 100 value 76.164180
final value 76.164180
stopped after 100 iterations
Fitting Repeat 5
# weights: 103
initial value 111.724821
iter 10 value 93.968716
iter 20 value 87.082672
iter 30 value 84.474141
iter 40 value 83.763142
iter 50 value 83.239798
iter 60 value 82.283952
iter 70 value 82.007439
iter 80 value 81.767045
iter 90 value 81.756263
final value 81.756180
converged
Fitting Repeat 1
# weights: 305
initial value 110.840517
iter 10 value 94.483873
iter 20 value 88.614012
iter 30 value 82.058293
iter 40 value 78.612573
iter 50 value 78.022394
iter 60 value 77.728471
iter 70 value 76.821493
iter 80 value 75.672364
iter 90 value 74.972544
iter 100 value 74.658353
final value 74.658353
stopped after 100 iterations
Fitting Repeat 2
# weights: 305
initial value 99.857841
iter 10 value 94.483652
iter 20 value 93.919136
iter 30 value 88.803557
iter 40 value 87.616100
iter 50 value 84.856772
iter 60 value 83.324064
iter 70 value 82.306690
iter 80 value 78.752125
iter 90 value 77.946153
iter 100 value 77.152971
final value 77.152971
stopped after 100 iterations
Fitting Repeat 3
# weights: 305
initial value 106.044156
iter 10 value 94.534803
iter 20 value 94.193509
iter 30 value 93.957618
iter 40 value 93.906910
iter 50 value 88.499748
iter 60 value 84.104268
iter 70 value 83.157721
iter 80 value 80.043759
iter 90 value 78.498619
iter 100 value 77.337941
final value 77.337941
stopped after 100 iterations
Fitting Repeat 4
# weights: 305
initial value 117.806927
iter 10 value 94.460369
iter 20 value 92.598162
iter 30 value 90.736952
iter 40 value 90.017632
iter 50 value 82.218422
iter 60 value 79.701830
iter 70 value 77.401579
iter 80 value 76.155755
iter 90 value 75.786771
iter 100 value 75.365394
final value 75.365394
stopped after 100 iterations
Fitting Repeat 5
# weights: 305
initial value 100.875153
iter 10 value 94.245168
iter 20 value 90.025111
iter 30 value 82.276057
iter 40 value 79.304329
iter 50 value 78.175266
iter 60 value 77.642493
iter 70 value 76.144408
iter 80 value 75.658430
iter 90 value 75.281683
iter 100 value 75.165341
final value 75.165341
stopped after 100 iterations
Fitting Repeat 1
# weights: 507
initial value 145.628100
iter 10 value 95.699666
iter 20 value 95.027625
iter 30 value 86.061766
iter 40 value 82.432002
iter 50 value 81.127621
iter 60 value 80.809908
iter 70 value 78.735336
iter 80 value 77.230717
iter 90 value 75.821718
iter 100 value 75.428453
final value 75.428453
stopped after 100 iterations
Fitting Repeat 2
# weights: 507
initial value 112.414410
iter 10 value 96.468552
iter 20 value 93.973819
iter 30 value 93.794168
iter 40 value 87.006956
iter 50 value 84.662787
iter 60 value 80.299008
iter 70 value 79.365838
iter 80 value 76.943233
iter 90 value 76.361474
iter 100 value 75.347581
final value 75.347581
stopped after 100 iterations
Fitting Repeat 3
# weights: 507
initial value 105.270672
iter 10 value 94.509563
iter 20 value 87.215237
iter 30 value 85.026115
iter 40 value 84.625297
iter 50 value 84.108538
iter 60 value 80.740245
iter 70 value 79.341362
iter 80 value 76.612715
iter 90 value 75.830378
iter 100 value 75.517448
final value 75.517448
stopped after 100 iterations
Fitting Repeat 4
# weights: 507
initial value 103.060218
iter 10 value 95.186290
iter 20 value 92.679946
iter 30 value 84.886333
iter 40 value 82.951639
iter 50 value 80.608216
iter 60 value 78.868958
iter 70 value 77.142199
iter 80 value 76.618283
iter 90 value 75.657598
iter 100 value 75.039735
final value 75.039735
stopped after 100 iterations
Fitting Repeat 5
# weights: 507
initial value 115.050360
iter 10 value 94.102484
iter 20 value 88.299190
iter 30 value 87.215864
iter 40 value 84.981600
iter 50 value 84.582227
iter 60 value 84.445026
iter 70 value 81.295226
iter 80 value 80.198714
iter 90 value 77.936901
iter 100 value 77.196299
final value 77.196299
stopped after 100 iterations
Fitting Repeat 1
# weights: 103
initial value 102.151202
final value 94.485854
converged
Fitting Repeat 2
# weights: 103
initial value 102.007860
final value 94.485718
converged
Fitting Repeat 3
# weights: 103
initial value 101.013281
iter 10 value 94.484888
final value 94.484214
converged
Fitting Repeat 4
# weights: 103
initial value 106.134264
final value 94.485890
converged
Fitting Repeat 5
# weights: 103
initial value 95.068453
final value 94.485840
converged
Fitting Repeat 1
# weights: 305
initial value 101.667857
iter 10 value 94.489174
iter 20 value 94.368425
iter 30 value 84.677665
iter 40 value 84.669593
iter 50 value 84.626772
iter 60 value 81.826802
iter 70 value 81.806790
iter 80 value 81.798155
iter 90 value 81.797223
iter 100 value 78.014667
final value 78.014667
stopped after 100 iterations
Fitting Repeat 2
# weights: 305
initial value 96.684422
iter 10 value 94.488214
iter 20 value 93.840206
iter 30 value 93.823066
iter 30 value 93.823066
iter 30 value 93.823066
final value 93.823066
converged
Fitting Repeat 3
# weights: 305
initial value 94.724664
iter 10 value 92.460282
iter 20 value 83.525552
iter 30 value 83.508762
iter 40 value 83.508253
iter 50 value 82.186196
iter 60 value 81.353516
iter 70 value 81.339031
iter 80 value 81.320058
iter 90 value 81.319179
iter 100 value 81.318762
final value 81.318762
stopped after 100 iterations
Fitting Repeat 4
# weights: 305
initial value 118.054669
iter 10 value 94.489260
iter 20 value 94.293547
iter 30 value 91.654657
iter 40 value 90.278357
iter 50 value 90.162713
iter 60 value 87.730911
iter 70 value 84.579920
iter 80 value 84.279321
iter 90 value 83.824818
iter 100 value 83.737286
final value 83.737286
stopped after 100 iterations
Fitting Repeat 5
# weights: 305
initial value 95.324345
iter 10 value 94.489421
iter 20 value 94.478776
iter 30 value 88.517871
iter 40 value 87.340007
iter 50 value 87.323591
final value 87.319671
converged
Fitting Repeat 1
# weights: 507
initial value 98.528905
iter 10 value 94.492805
iter 20 value 94.429004
iter 30 value 93.083587
iter 40 value 86.548634
iter 50 value 86.509610
iter 60 value 86.506680
iter 70 value 86.504707
iter 80 value 86.501096
iter 90 value 86.497227
iter 100 value 79.611355
final value 79.611355
stopped after 100 iterations
Fitting Repeat 2
# weights: 507
initial value 110.271423
iter 10 value 90.847060
iter 20 value 82.048936
iter 30 value 81.277991
iter 40 value 80.192225
iter 50 value 78.801951
iter 60 value 78.796979
iter 70 value 78.787200
iter 80 value 77.403885
iter 90 value 75.855992
iter 100 value 75.650226
final value 75.650226
stopped after 100 iterations
Fitting Repeat 3
# weights: 507
initial value 103.927833
iter 10 value 94.035612
iter 20 value 94.028466
iter 30 value 93.997277
iter 40 value 90.844009
iter 50 value 90.087609
final value 90.080798
converged
Fitting Repeat 4
# weights: 507
initial value 102.688652
iter 10 value 94.055072
iter 20 value 86.017449
iter 30 value 85.027885
iter 40 value 85.006553
final value 85.005015
converged
Fitting Repeat 5
# weights: 507
initial value 103.954880
iter 10 value 94.035610
iter 20 value 94.027658
iter 30 value 94.026992
final value 94.026989
converged
Fitting Repeat 1
# weights: 507
initial value 120.823944
iter 10 value 117.898463
iter 20 value 117.466426
iter 30 value 105.449851
iter 40 value 102.438753
iter 50 value 102.349401
iter 60 value 102.344044
iter 70 value 102.343376
final value 102.343176
converged
Fitting Repeat 2
# weights: 507
initial value 118.050122
iter 10 value 117.892175
iter 20 value 111.798228
iter 30 value 110.170212
iter 40 value 109.935513
iter 50 value 108.274092
iter 60 value 107.188515
iter 70 value 107.166942
iter 80 value 106.898719
iter 90 value 104.611860
iter 100 value 101.458546
final value 101.458546
stopped after 100 iterations
Fitting Repeat 3
# weights: 507
initial value 150.306428
iter 10 value 117.602601
iter 20 value 117.596386
iter 30 value 117.591197
iter 40 value 117.523690
iter 50 value 117.511522
final value 117.511509
converged
Fitting Repeat 4
# weights: 507
initial value 122.550301
iter 10 value 117.897382
iter 20 value 117.808812
iter 30 value 117.507326
iter 40 value 116.881363
iter 50 value 112.988816
iter 60 value 111.349137
iter 70 value 111.295864
iter 80 value 106.229898
iter 90 value 104.849332
iter 100 value 104.798713
final value 104.798713
stopped after 100 iterations
Fitting Repeat 5
# weights: 507
initial value 132.042300
iter 10 value 117.897950
iter 20 value 117.882512
iter 30 value 117.133701
iter 40 value 116.845035
final value 116.844264
converged
svmRadial
ranger
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls < cases
Setting levels: control = Positive, case = Negative
Setting direction: controls < cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls < cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls < cases
Setting levels: control = Positive, case = Negative
Setting direction: controls < cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
RUNIT TEST PROTOCOL -- Tue Mar 3 20:23:35 2026
***********************************************
Number of test functions: 7
Number of errors: 0
Number of failures: 0
1 Test Suite :
HPiP RUnit Tests - 7 test functions, 0 errors, 0 failures
Number of test functions: 7
Number of errors: 0
Number of failures: 0
Warning messages:
1: `repeats` has no meaning for this resampling method.
2: executing %dopar% sequentially: no parallel backend registered
>
>
>
>
> proc.time()
user system elapsed
20.179 0.512 72.989
HPiP.Rcheck/HPiP-Ex.timings
| name | user | system | elapsed | |
| FSmethod | 19.185 | 0.938 | 21.217 | |
| FreqInteractors | 0.154 | 0.012 | 0.170 | |
| calculateAAC | 0.012 | 0.001 | 0.014 | |
| calculateAutocor | 0.126 | 0.022 | 0.173 | |
| calculateCTDC | 0.036 | 0.003 | 0.046 | |
| calculateCTDD | 0.170 | 0.009 | 0.199 | |
| calculateCTDT | 0.064 | 0.007 | 0.072 | |
| calculateCTriad | 0.168 | 0.018 | 0.186 | |
| calculateDC | 0.034 | 0.005 | 0.040 | |
| calculateF | 0.107 | 0.004 | 0.112 | |
| calculateKSAAP | 0.034 | 0.003 | 0.036 | |
| calculateQD_Sm | 0.907 | 0.093 | 1.011 | |
| calculateTC | 0.571 | 0.059 | 0.640 | |
| calculateTC_Sm | 0.131 | 0.010 | 0.147 | |
| corr_plot | 18.974 | 0.941 | 20.695 | |
| enrichfindP | 0.204 | 0.039 | 12.503 | |
| enrichfind_hp | 0.015 | 0.005 | 0.961 | |
| enrichplot | 0.174 | 0.009 | 0.186 | |
| filter_missing_values | 0.000 | 0.000 | 0.001 | |
| getFASTA | 0.031 | 0.007 | 3.213 | |
| getHPI | 0 | 0 | 0 | |
| get_negativePPI | 0.001 | 0.000 | 0.001 | |
| get_positivePPI | 0 | 0 | 0 | |
| impute_missing_data | 0.000 | 0.000 | 0.001 | |
| plotPPI | 0.039 | 0.002 | 0.042 | |
| pred_ensembel | 6.570 | 0.119 | 6.280 | |
| var_imp | 18.602 | 1.037 | 20.791 | |