| Back to Multiple platform build/check report for BioC 3.23: simplified long |
|
This page was generated on 2026-03-06 11:35 -0500 (Fri, 06 Mar 2026).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 24.04.3 LTS) | x86_64 | R Under development (unstable) (2026-01-15 r89304) -- "Unsuffered Consequences" | 4891 |
| kjohnson3 | macOS 13.7.7 Ventura | arm64 | R Under development (unstable) (2026-01-15 r89304) -- "Unsuffered Consequences" | 4593 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 1007/2357 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| HPiP 1.17.2 (landing page) Matineh Rahmatbakhsh
| nebbiolo1 | Linux (Ubuntu 24.04.3 LTS) / x86_64 | OK | OK | OK | |||||||||
| kjohnson3 | macOS 13.7.7 Ventura / arm64 | OK | OK | OK | OK | |||||||||
| See other builds for HPiP in R Universe. | ||||||||||||||
|
To the developers/maintainers of the HPiP package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/HPiP.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: HPiP |
| Version: 1.17.2 |
| Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:HPiP.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings HPiP_1.17.2.tar.gz |
| StartedAt: 2026-03-05 20:22:17 -0500 (Thu, 05 Mar 2026) |
| EndedAt: 2026-03-05 20:25:46 -0500 (Thu, 05 Mar 2026) |
| EllapsedTime: 209.7 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: HPiP.Rcheck |
| Warnings: 0 |
##############################################################################
##############################################################################
###
### Running command:
###
### /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:HPiP.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings HPiP_1.17.2.tar.gz
###
##############################################################################
##############################################################################
* using log directory ‘/Users/biocbuild/bbs-3.23-bioc/meat/HPiP.Rcheck’
* using R Under development (unstable) (2026-01-15 r89304)
* using platform: aarch64-apple-darwin20
* R was compiled by
Apple clang version 16.0.0 (clang-1600.0.26.6)
GNU Fortran (GCC) 14.2.0
* running under: macOS Sonoma 14.8.3
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘HPiP/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘HPiP’ version ‘1.17.2’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘HPiP’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... NOTE
License stub is invalid DCF.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... NOTE
checkRd: (-1) getHPI.Rd:29: Lost braces
29 | then the Kronecker product is the code{(pm × qn)} block matrix
| ^
* checking Rd metadata ... OK
* checking Rd cross-references ... INFO
Package unavailable to check Rd xrefs: ‘ftrCOOL’
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking R/sysdata.rda ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
FSmethod 19.200 0.922 20.868
corr_plot 19.056 0.865 20.345
var_imp 18.650 1.004 20.544
pred_ensembel 6.496 0.115 6.107
enrichfindP 0.206 0.037 12.042
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
Running ‘runTests.R’
OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: 2 NOTEs
See
‘/Users/biocbuild/bbs-3.23-bioc/meat/HPiP.Rcheck/00check.log’
for details.
HPiP.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL HPiP ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/4.6-arm64/Resources/library’ * installing *source* package ‘HPiP’ ... ** this is package ‘HPiP’ version ‘1.17.2’ ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (HPiP)
HPiP.Rcheck/tests/runTests.Rout
R Under development (unstable) (2026-01-15 r89304) -- "Unsuffered Consequences"
Copyright (C) 2026 The R Foundation for Statistical Computing
Platform: aarch64-apple-darwin20
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> BiocGenerics:::testPackage('HPiP')
No results to show
Please make sure that the organism is correct or set significant = FALSE
No results to show
Please make sure that the organism is correct or set significant = FALSE
No results to show
Please make sure that the organism is correct or set significant = FALSE
No results to show
Please make sure that the organism is correct or set significant = FALSE
No results to show
Please make sure that the organism is correct or set significant = FALSE
No results to show
Please make sure that the organism is correct or set significant = FALSE
No results to show
Please make sure that the organism is correct or set significant = FALSE
avNNet
Loading required package: ggplot2
Loading required package: lattice
Fitting Repeat 1
# weights: 103
initial value 103.772386
final value 94.052910
converged
Fitting Repeat 2
# weights: 103
initial value 97.670196
final value 93.528329
converged
Fitting Repeat 3
# weights: 103
initial value 100.556778
iter 10 value 87.273814
iter 20 value 86.099775
iter 30 value 86.085408
iter 40 value 86.039451
final value 86.009524
converged
Fitting Repeat 4
# weights: 103
initial value 112.614186
final value 94.052910
converged
Fitting Repeat 5
# weights: 103
initial value 96.080179
final value 94.052910
converged
Fitting Repeat 1
# weights: 305
initial value 99.323128
final value 94.052910
converged
Fitting Repeat 2
# weights: 305
initial value 110.029163
final value 93.582418
converged
Fitting Repeat 3
# weights: 305
initial value 109.499306
final value 93.582418
converged
Fitting Repeat 4
# weights: 305
initial value 102.616452
final value 94.052910
converged
Fitting Repeat 5
# weights: 305
initial value 100.170151
final value 94.052910
converged
Fitting Repeat 1
# weights: 507
initial value 97.512732
final value 94.052910
converged
Fitting Repeat 2
# weights: 507
initial value 102.599646
final value 94.052910
converged
Fitting Repeat 3
# weights: 507
initial value 95.423588
iter 10 value 93.582418
iter 10 value 93.582418
iter 10 value 93.582418
final value 93.582418
converged
Fitting Repeat 4
# weights: 507
initial value 115.034417
final value 94.052910
converged
Fitting Repeat 5
# weights: 507
initial value 98.717410
final value 93.582418
converged
Fitting Repeat 1
# weights: 103
initial value 99.843513
iter 10 value 93.961719
iter 20 value 93.656004
iter 30 value 90.594615
iter 40 value 87.170283
iter 50 value 86.992661
iter 60 value 86.479034
iter 70 value 86.120903
iter 80 value 86.094618
final value 86.093863
converged
Fitting Repeat 2
# weights: 103
initial value 98.367839
iter 10 value 94.042109
iter 20 value 89.878075
iter 30 value 87.890287
iter 40 value 86.335027
iter 50 value 84.906445
iter 60 value 84.751539
iter 70 value 84.750449
iter 70 value 84.750449
iter 70 value 84.750449
final value 84.750449
converged
Fitting Repeat 3
# weights: 103
initial value 107.377787
iter 10 value 93.595665
iter 20 value 87.945513
iter 30 value 87.401403
iter 40 value 87.222652
iter 50 value 87.072812
iter 60 value 86.999221
final value 86.997653
converged
Fitting Repeat 4
# weights: 103
initial value 97.382550
iter 10 value 94.081929
iter 20 value 94.001437
iter 30 value 92.802242
iter 40 value 87.706274
iter 50 value 87.278510
iter 60 value 86.505155
iter 70 value 86.323541
iter 80 value 86.317697
iter 90 value 86.315335
final value 86.315316
converged
Fitting Repeat 5
# weights: 103
initial value 97.258274
iter 10 value 94.047673
iter 20 value 88.713252
iter 30 value 85.748686
iter 40 value 85.367236
iter 50 value 85.034998
iter 60 value 84.709899
iter 70 value 84.707614
final value 84.707609
converged
Fitting Repeat 1
# weights: 305
initial value 108.363294
iter 10 value 93.854457
iter 20 value 90.835898
iter 30 value 89.499210
iter 40 value 87.787680
iter 50 value 87.127368
iter 60 value 85.151057
iter 70 value 84.635597
iter 80 value 84.445430
iter 90 value 84.299236
iter 100 value 84.178864
final value 84.178864
stopped after 100 iterations
Fitting Repeat 2
# weights: 305
initial value 100.732830
iter 10 value 93.676979
iter 20 value 89.704576
iter 30 value 86.808206
iter 40 value 85.752477
iter 50 value 85.460893
iter 60 value 85.280413
iter 70 value 85.020171
iter 80 value 84.843572
iter 90 value 84.806374
iter 100 value 84.616711
final value 84.616711
stopped after 100 iterations
Fitting Repeat 3
# weights: 305
initial value 105.592886
iter 10 value 94.025525
iter 20 value 93.698104
iter 30 value 93.433136
iter 40 value 88.750297
iter 50 value 86.737315
iter 60 value 86.459164
iter 70 value 85.411798
iter 80 value 84.972035
iter 90 value 84.768429
iter 100 value 84.634210
final value 84.634210
stopped after 100 iterations
Fitting Repeat 4
# weights: 305
initial value 101.644622
iter 10 value 93.953952
iter 20 value 91.398802
iter 30 value 90.893093
iter 40 value 89.290637
iter 50 value 85.327456
iter 60 value 84.727021
iter 70 value 84.531827
iter 80 value 84.487911
iter 90 value 84.390690
iter 100 value 84.006765
final value 84.006765
stopped after 100 iterations
Fitting Repeat 5
# weights: 305
initial value 99.824374
iter 10 value 93.018485
iter 20 value 91.378495
iter 30 value 90.539224
iter 40 value 86.001943
iter 50 value 85.817335
iter 60 value 85.598416
iter 70 value 85.165674
iter 80 value 84.510323
iter 90 value 84.066035
iter 100 value 83.959213
final value 83.959213
stopped after 100 iterations
Fitting Repeat 1
# weights: 507
initial value 109.137722
iter 10 value 93.761966
iter 20 value 92.914110
iter 30 value 91.280426
iter 40 value 87.364576
iter 50 value 86.910507
iter 60 value 85.969024
iter 70 value 84.813708
iter 80 value 84.512851
iter 90 value 84.193184
iter 100 value 83.755920
final value 83.755920
stopped after 100 iterations
Fitting Repeat 2
# weights: 507
initial value 105.300217
iter 10 value 94.055573
iter 20 value 92.602107
iter 30 value 91.567350
iter 40 value 89.491800
iter 50 value 88.842826
iter 60 value 88.374758
iter 70 value 87.180798
iter 80 value 85.500168
iter 90 value 84.452915
iter 100 value 84.214274
final value 84.214274
stopped after 100 iterations
Fitting Repeat 3
# weights: 507
initial value 144.906744
iter 10 value 95.556356
iter 20 value 88.822864
iter 30 value 87.364351
iter 40 value 86.289286
iter 50 value 85.523048
iter 60 value 84.950839
iter 70 value 84.681640
iter 80 value 83.910280
iter 90 value 83.816982
iter 100 value 83.788146
final value 83.788146
stopped after 100 iterations
Fitting Repeat 4
# weights: 507
initial value 130.916399
iter 10 value 93.854712
iter 20 value 93.604538
iter 30 value 92.756098
iter 40 value 91.989764
iter 50 value 91.784613
iter 60 value 89.731556
iter 70 value 88.738156
iter 80 value 87.594978
iter 90 value 86.967876
iter 100 value 86.094710
final value 86.094710
stopped after 100 iterations
Fitting Repeat 5
# weights: 507
initial value 126.437601
iter 10 value 94.904677
iter 20 value 90.047889
iter 30 value 88.265203
iter 40 value 86.510924
iter 50 value 85.007903
iter 60 value 83.965462
iter 70 value 83.889153
iter 80 value 83.861678
iter 90 value 83.817934
iter 100 value 83.758186
final value 83.758186
stopped after 100 iterations
Fitting Repeat 1
# weights: 103
initial value 110.140113
final value 94.055172
converged
Fitting Repeat 2
# weights: 103
initial value 95.435819
final value 94.054762
converged
Fitting Repeat 3
# weights: 103
initial value 95.376237
iter 10 value 94.054406
final value 94.052914
converged
Fitting Repeat 4
# weights: 103
initial value 102.300390
iter 10 value 94.054726
iter 20 value 94.054282
final value 94.052922
converged
Fitting Repeat 5
# weights: 103
initial value 94.445058
final value 94.054467
converged
Fitting Repeat 1
# weights: 305
initial value 103.219198
iter 10 value 94.057914
iter 20 value 93.879368
iter 30 value 93.583338
iter 40 value 93.582888
iter 50 value 93.582728
iter 60 value 92.708810
iter 70 value 88.413349
iter 80 value 86.735719
iter 90 value 86.624495
iter 100 value 86.358328
final value 86.358328
stopped after 100 iterations
Fitting Repeat 2
# weights: 305
initial value 99.651981
iter 10 value 91.169702
iter 20 value 86.734513
iter 30 value 86.711704
iter 40 value 86.691618
iter 50 value 86.690525
iter 60 value 86.463593
iter 70 value 86.282665
iter 80 value 86.269880
final value 86.269147
converged
Fitting Repeat 3
# weights: 305
initial value 98.401506
iter 10 value 93.294370
iter 20 value 87.981347
iter 30 value 86.544183
iter 40 value 86.539330
iter 50 value 86.539217
iter 60 value 86.539102
final value 86.538951
converged
Fitting Repeat 4
# weights: 305
initial value 97.186748
iter 10 value 93.587274
iter 20 value 93.583241
final value 93.582646
converged
Fitting Repeat 5
# weights: 305
initial value 96.392984
iter 10 value 94.057761
iter 20 value 94.052893
iter 30 value 88.625835
iter 40 value 85.030821
iter 50 value 84.639393
iter 60 value 83.830015
iter 70 value 82.593360
iter 80 value 82.524737
iter 90 value 82.489163
final value 82.487419
converged
Fitting Repeat 1
# weights: 507
initial value 100.448981
iter 10 value 93.590757
iter 20 value 93.584354
iter 30 value 93.558314
iter 40 value 92.388477
iter 50 value 88.350403
iter 60 value 85.161045
iter 70 value 84.917415
iter 80 value 84.913978
final value 84.913898
converged
Fitting Repeat 2
# weights: 507
initial value 108.042548
iter 10 value 93.725022
iter 20 value 93.587062
final value 93.583956
converged
Fitting Repeat 3
# weights: 507
initial value 101.912272
iter 10 value 93.591392
iter 20 value 93.583462
final value 93.582888
converged
Fitting Repeat 4
# weights: 507
initial value 98.454720
iter 10 value 94.061179
iter 20 value 93.916045
iter 30 value 90.485015
iter 40 value 87.627526
iter 50 value 87.296582
iter 60 value 87.181911
iter 70 value 86.721784
iter 80 value 86.662467
final value 86.661907
converged
Fitting Repeat 5
# weights: 507
initial value 97.687356
iter 10 value 93.324542
iter 20 value 92.711267
iter 30 value 92.545950
iter 40 value 92.542852
iter 50 value 91.948290
iter 60 value 90.646622
iter 70 value 90.523029
iter 80 value 90.360065
final value 90.278096
converged
Fitting Repeat 1
# weights: 103
initial value 115.507279
final value 93.701657
converged
Fitting Repeat 2
# weights: 103
initial value 95.715375
iter 10 value 85.758750
iter 20 value 84.542634
iter 30 value 84.533380
final value 84.533338
converged
Fitting Repeat 3
# weights: 103
initial value 96.925389
iter 10 value 93.773247
final value 93.772973
converged
Fitting Repeat 4
# weights: 103
initial value 100.301388
final value 94.484211
converged
Fitting Repeat 5
# weights: 103
initial value 94.328552
iter 10 value 93.772983
final value 93.772973
converged
Fitting Repeat 1
# weights: 305
initial value 121.925158
final value 93.022222
converged
Fitting Repeat 2
# weights: 305
initial value 94.680554
iter 10 value 92.906246
final value 92.904867
converged
Fitting Repeat 3
# weights: 305
initial value 109.655460
final value 94.484211
converged
Fitting Repeat 4
# weights: 305
initial value 113.552373
final value 94.484211
converged
Fitting Repeat 5
# weights: 305
initial value 101.838159
final value 94.484211
converged
Fitting Repeat 1
# weights: 507
initial value 99.588974
final value 94.484211
converged
Fitting Repeat 2
# weights: 507
initial value 91.920574
iter 10 value 84.822859
final value 84.530200
converged
Fitting Repeat 3
# weights: 507
initial value 98.575415
final value 94.484211
converged
Fitting Repeat 4
# weights: 507
initial value 111.539834
final value 94.484211
converged
Fitting Repeat 5
# weights: 507
initial value 96.799661
final value 93.772973
converged
Fitting Repeat 1
# weights: 103
initial value 97.552539
iter 10 value 94.477773
iter 20 value 86.254920
iter 30 value 85.001910
iter 40 value 82.779517
iter 50 value 82.178244
iter 60 value 81.707530
iter 70 value 81.352832
final value 81.352014
converged
Fitting Repeat 2
# weights: 103
initial value 102.078696
iter 10 value 94.699041
iter 20 value 94.416404
iter 30 value 87.679787
iter 40 value 86.347320
iter 50 value 86.181595
iter 60 value 83.430290
iter 70 value 81.589114
iter 80 value 81.180494
iter 90 value 80.933218
final value 80.928572
converged
Fitting Repeat 3
# weights: 103
initial value 99.152584
iter 10 value 94.129742
iter 20 value 84.733059
iter 30 value 82.539943
iter 40 value 81.792805
iter 50 value 81.679845
iter 60 value 81.321601
iter 70 value 81.028778
final value 81.028614
converged
Fitting Repeat 4
# weights: 103
initial value 99.375689
iter 10 value 94.480247
iter 20 value 93.627396
iter 30 value 93.395173
iter 40 value 93.173580
iter 50 value 86.299180
iter 60 value 83.373805
iter 70 value 80.758212
iter 80 value 80.472257
iter 90 value 80.451464
iter 100 value 80.450451
final value 80.450451
stopped after 100 iterations
Fitting Repeat 5
# weights: 103
initial value 103.183224
iter 10 value 94.130283
iter 20 value 93.316670
iter 30 value 89.642039
iter 40 value 83.967572
iter 50 value 83.318957
iter 60 value 82.706323
iter 70 value 81.476510
iter 80 value 81.449091
final value 81.446051
converged
Fitting Repeat 1
# weights: 305
initial value 102.158442
iter 10 value 93.875646
iter 20 value 90.518263
iter 30 value 83.378234
iter 40 value 82.500469
iter 50 value 82.248057
iter 60 value 80.807349
iter 70 value 80.437829
iter 80 value 80.138690
iter 90 value 79.420969
iter 100 value 77.793720
final value 77.793720
stopped after 100 iterations
Fitting Repeat 2
# weights: 305
initial value 125.724655
iter 10 value 94.487543
iter 20 value 88.159923
iter 30 value 85.844000
iter 40 value 82.195921
iter 50 value 81.732682
iter 60 value 80.775926
iter 70 value 80.174958
iter 80 value 78.089292
iter 90 value 77.879553
iter 100 value 77.633174
final value 77.633174
stopped after 100 iterations
Fitting Repeat 3
# weights: 305
initial value 109.533706
iter 10 value 94.417955
iter 20 value 93.268367
iter 30 value 93.175822
iter 40 value 88.810362
iter 50 value 85.752890
iter 60 value 83.387097
iter 70 value 81.965320
iter 80 value 81.616043
iter 90 value 81.146858
iter 100 value 80.961027
final value 80.961027
stopped after 100 iterations
Fitting Repeat 4
# weights: 305
initial value 125.725355
iter 10 value 95.043171
iter 20 value 83.723509
iter 30 value 82.273941
iter 40 value 81.153852
iter 50 value 81.037939
iter 60 value 80.699069
iter 70 value 80.332045
iter 80 value 80.282904
iter 90 value 80.254163
iter 100 value 79.181732
final value 79.181732
stopped after 100 iterations
Fitting Repeat 5
# weights: 305
initial value 101.163535
iter 10 value 94.178344
iter 20 value 92.771646
iter 30 value 83.487982
iter 40 value 82.281388
iter 50 value 79.886182
iter 60 value 78.046840
iter 70 value 77.607157
iter 80 value 77.169723
iter 90 value 76.682788
iter 100 value 76.474781
final value 76.474781
stopped after 100 iterations
Fitting Repeat 1
# weights: 507
initial value 108.182791
iter 10 value 94.012238
iter 20 value 86.258573
iter 30 value 85.642197
iter 40 value 84.082229
iter 50 value 81.027436
iter 60 value 79.317556
iter 70 value 78.502228
iter 80 value 77.224095
iter 90 value 76.881426
iter 100 value 76.541949
final value 76.541949
stopped after 100 iterations
Fitting Repeat 2
# weights: 507
initial value 113.394043
iter 10 value 94.356063
iter 20 value 91.487705
iter 30 value 86.267790
iter 40 value 84.206331
iter 50 value 79.818450
iter 60 value 79.452132
iter 70 value 78.976121
iter 80 value 78.542457
iter 90 value 78.400651
iter 100 value 78.296666
final value 78.296666
stopped after 100 iterations
Fitting Repeat 3
# weights: 507
initial value 112.409323
iter 10 value 94.084088
iter 20 value 93.254270
iter 30 value 93.194940
iter 40 value 93.175612
iter 50 value 86.302419
iter 60 value 78.552350
iter 70 value 78.318546
iter 80 value 77.587494
iter 90 value 76.907208
iter 100 value 76.564819
final value 76.564819
stopped after 100 iterations
Fitting Repeat 4
# weights: 507
initial value 120.562342
iter 10 value 90.216295
iter 20 value 85.160436
iter 30 value 82.487196
iter 40 value 80.515822
iter 50 value 77.799871
iter 60 value 77.076263
iter 70 value 76.724730
iter 80 value 76.546481
iter 90 value 76.289155
iter 100 value 76.176918
final value 76.176918
stopped after 100 iterations
Fitting Repeat 5
# weights: 507
initial value 111.184818
iter 10 value 93.258169
iter 20 value 86.209061
iter 30 value 83.869555
iter 40 value 81.722840
iter 50 value 80.803595
iter 60 value 79.206944
iter 70 value 77.777472
iter 80 value 77.226364
iter 90 value 77.059844
iter 100 value 77.051232
final value 77.051232
stopped after 100 iterations
Fitting Repeat 1
# weights: 103
initial value 98.276548
iter 10 value 94.485852
final value 94.484216
converged
Fitting Repeat 2
# weights: 103
initial value 97.702289
iter 10 value 94.266080
iter 20 value 93.769664
iter 30 value 93.769167
iter 40 value 93.769067
iter 50 value 93.768691
iter 60 value 93.650250
iter 70 value 93.010894
iter 80 value 93.010477
final value 93.010440
converged
Fitting Repeat 3
# weights: 103
initial value 99.982242
final value 94.485842
converged
Fitting Repeat 4
# weights: 103
initial value 99.257441
final value 94.485999
converged
Fitting Repeat 5
# weights: 103
initial value 103.330787
final value 94.485963
converged
Fitting Repeat 1
# weights: 305
initial value 126.393778
iter 10 value 93.778828
iter 20 value 93.777210
iter 30 value 93.122096
iter 40 value 89.825746
iter 50 value 84.811387
final value 84.803654
converged
Fitting Repeat 2
# weights: 305
initial value 109.219829
iter 10 value 94.489027
iter 20 value 94.484269
iter 30 value 90.001649
iter 40 value 86.518365
iter 50 value 81.992133
iter 60 value 80.584797
iter 70 value 79.850974
iter 80 value 79.240393
iter 90 value 79.176441
iter 100 value 79.172626
final value 79.172626
stopped after 100 iterations
Fitting Repeat 3
# weights: 305
initial value 115.241114
iter 10 value 93.778235
iter 20 value 93.774914
iter 30 value 93.702033
iter 40 value 93.699694
final value 93.699632
converged
Fitting Repeat 4
# weights: 305
initial value 95.971462
iter 10 value 94.489117
iter 20 value 94.468602
iter 30 value 93.038123
final value 93.022748
converged
Fitting Repeat 5
# weights: 305
initial value 113.522304
iter 10 value 94.489557
iter 20 value 94.472163
iter 30 value 86.890983
iter 40 value 83.740176
iter 50 value 83.287147
iter 60 value 83.154557
iter 70 value 83.096998
iter 80 value 83.025282
iter 90 value 83.025160
final value 83.024543
converged
Fitting Repeat 1
# weights: 507
initial value 108.431367
iter 10 value 94.492399
iter 20 value 94.484595
iter 30 value 93.313345
iter 40 value 81.434706
iter 50 value 81.140259
iter 60 value 80.008704
iter 70 value 76.170060
iter 80 value 74.738326
iter 90 value 74.637543
iter 100 value 74.635662
final value 74.635662
stopped after 100 iterations
Fitting Repeat 2
# weights: 507
initial value 104.216702
iter 10 value 94.491655
iter 20 value 93.758570
iter 30 value 90.450128
iter 40 value 83.518981
iter 50 value 80.904410
iter 60 value 80.903070
iter 70 value 80.902166
final value 80.901927
converged
Fitting Repeat 3
# weights: 507
initial value 118.081505
iter 10 value 94.492057
iter 20 value 94.266039
final value 93.702132
converged
Fitting Repeat 4
# weights: 507
initial value 95.264223
iter 10 value 93.781769
iter 20 value 93.772910
iter 30 value 93.251170
iter 40 value 92.944341
iter 50 value 92.926632
final value 92.926540
converged
Fitting Repeat 5
# weights: 507
initial value 107.585119
iter 10 value 94.571628
iter 20 value 94.557568
iter 30 value 84.598730
iter 40 value 83.605542
iter 50 value 80.780030
iter 60 value 80.644683
iter 70 value 79.657331
iter 80 value 79.622456
iter 90 value 79.615827
iter 100 value 79.515780
final value 79.515780
stopped after 100 iterations
Fitting Repeat 1
# weights: 103
initial value 103.268205
final value 94.479532
converged
Fitting Repeat 2
# weights: 103
initial value 94.556798
final value 94.484211
converged
Fitting Repeat 3
# weights: 103
initial value 96.903461
final value 94.484211
converged
Fitting Repeat 4
# weights: 103
initial value 100.422178
final value 94.484211
converged
Fitting Repeat 5
# weights: 103
initial value 95.465505
final value 94.484211
converged
Fitting Repeat 1
# weights: 305
initial value 105.037269
final value 94.484211
converged
Fitting Repeat 2
# weights: 305
initial value 102.549103
final value 94.467391
converged
Fitting Repeat 3
# weights: 305
initial value 95.685270
final value 94.484138
converged
Fitting Repeat 4
# weights: 305
initial value 101.879914
final value 94.484211
converged
Fitting Repeat 5
# weights: 305
initial value 117.368323
iter 10 value 93.506851
iter 20 value 92.979995
iter 30 value 92.638754
iter 40 value 92.630687
iter 40 value 92.630686
iter 40 value 92.630686
final value 92.630686
converged
Fitting Repeat 1
# weights: 507
initial value 94.437013
iter 10 value 91.387044
iter 20 value 90.857338
iter 30 value 90.844440
iter 40 value 90.832323
final value 90.832214
converged
Fitting Repeat 2
# weights: 507
initial value 106.405835
final value 94.484211
converged
Fitting Repeat 3
# weights: 507
initial value 107.402177
iter 10 value 94.090627
final value 94.090583
converged
Fitting Repeat 4
# weights: 507
initial value 98.263162
iter 10 value 87.837334
final value 87.316697
converged
Fitting Repeat 5
# weights: 507
initial value 97.387197
final value 94.484211
converged
Fitting Repeat 1
# weights: 103
initial value 98.862676
iter 10 value 94.449447
iter 20 value 91.084547
iter 30 value 87.246428
iter 40 value 87.055618
iter 50 value 83.223632
iter 60 value 81.284074
iter 70 value 80.864899
iter 80 value 80.551201
iter 90 value 80.216838
iter 100 value 79.945004
final value 79.945004
stopped after 100 iterations
Fitting Repeat 2
# weights: 103
initial value 102.000070
iter 10 value 94.475534
iter 20 value 93.136829
iter 30 value 92.769439
iter 40 value 89.532050
iter 50 value 89.417199
iter 60 value 85.339053
iter 70 value 82.907093
iter 80 value 81.728788
iter 90 value 80.836237
iter 100 value 80.611245
final value 80.611245
stopped after 100 iterations
Fitting Repeat 3
# weights: 103
initial value 103.311973
iter 10 value 94.458691
iter 20 value 94.190760
iter 30 value 94.085667
iter 40 value 94.072910
iter 50 value 89.634518
iter 60 value 89.060638
iter 70 value 88.551429
iter 80 value 83.256168
iter 90 value 82.496377
iter 100 value 80.913452
final value 80.913452
stopped after 100 iterations
Fitting Repeat 4
# weights: 103
initial value 96.252378
iter 10 value 94.417241
iter 20 value 92.292044
iter 30 value 92.094536
iter 40 value 88.817697
iter 50 value 83.543873
iter 60 value 82.701629
iter 70 value 82.554333
iter 80 value 81.683958
iter 90 value 81.145747
iter 100 value 80.987647
final value 80.987647
stopped after 100 iterations
Fitting Repeat 5
# weights: 103
initial value 97.943571
iter 10 value 93.982664
iter 20 value 85.442680
iter 30 value 84.454961
iter 40 value 84.210020
iter 50 value 83.123045
iter 60 value 81.992553
iter 70 value 81.771870
iter 80 value 80.375773
iter 90 value 79.936763
iter 100 value 79.929403
final value 79.929403
stopped after 100 iterations
Fitting Repeat 1
# weights: 305
initial value 129.767781
iter 10 value 95.193058
iter 20 value 94.570279
iter 30 value 94.521810
iter 40 value 93.883726
iter 50 value 88.820025
iter 60 value 81.489037
iter 70 value 80.236304
iter 80 value 79.004678
iter 90 value 78.859051
iter 100 value 78.797853
final value 78.797853
stopped after 100 iterations
Fitting Repeat 2
# weights: 305
initial value 115.233611
iter 10 value 94.390044
iter 20 value 92.893952
iter 30 value 92.414977
iter 40 value 91.976106
iter 50 value 85.962960
iter 60 value 83.492693
iter 70 value 83.077798
iter 80 value 82.521926
iter 90 value 81.790268
iter 100 value 81.371406
final value 81.371406
stopped after 100 iterations
Fitting Repeat 3
# weights: 305
initial value 102.587829
iter 10 value 94.521667
iter 20 value 86.120469
iter 30 value 83.321239
iter 40 value 79.884989
iter 50 value 78.812742
iter 60 value 78.434819
iter 70 value 78.228729
iter 80 value 78.119696
iter 90 value 78.068093
iter 100 value 77.920422
final value 77.920422
stopped after 100 iterations
Fitting Repeat 4
# weights: 305
initial value 111.655575
iter 10 value 94.380149
iter 20 value 92.847629
iter 30 value 91.986217
iter 40 value 91.351471
iter 50 value 87.199740
iter 60 value 86.274309
iter 70 value 85.702540
iter 80 value 83.928550
iter 90 value 81.919332
iter 100 value 81.188071
final value 81.188071
stopped after 100 iterations
Fitting Repeat 5
# weights: 305
initial value 109.964299
iter 10 value 94.744718
iter 20 value 92.703707
iter 30 value 81.868104
iter 40 value 81.512322
iter 50 value 81.239967
iter 60 value 80.279306
iter 70 value 79.327383
iter 80 value 78.600197
iter 90 value 78.555155
iter 100 value 78.374856
final value 78.374856
stopped after 100 iterations
Fitting Repeat 1
# weights: 507
initial value 107.809922
iter 10 value 94.502889
iter 20 value 88.093489
iter 30 value 84.438980
iter 40 value 82.183206
iter 50 value 80.424460
iter 60 value 80.025979
iter 70 value 79.132072
iter 80 value 78.865653
iter 90 value 78.559304
iter 100 value 78.302548
final value 78.302548
stopped after 100 iterations
Fitting Repeat 2
# weights: 507
initial value 111.066818
iter 10 value 94.691882
iter 20 value 84.955372
iter 30 value 83.282523
iter 40 value 82.906029
iter 50 value 81.684467
iter 60 value 79.993641
iter 70 value 79.529939
iter 80 value 78.810560
iter 90 value 78.679499
iter 100 value 78.576090
final value 78.576090
stopped after 100 iterations
Fitting Repeat 3
# weights: 507
initial value 107.975965
iter 10 value 91.882144
iter 20 value 87.007230
iter 30 value 85.013679
iter 40 value 83.780163
iter 50 value 82.321293
iter 60 value 81.978758
iter 70 value 81.698494
iter 80 value 81.523325
iter 90 value 81.371501
iter 100 value 81.224566
final value 81.224566
stopped after 100 iterations
Fitting Repeat 4
# weights: 507
initial value 105.212090
iter 10 value 95.935946
iter 20 value 86.244705
iter 30 value 82.467987
iter 40 value 81.053164
iter 50 value 80.555474
iter 60 value 79.914650
iter 70 value 79.195807
iter 80 value 78.269641
iter 90 value 77.865018
iter 100 value 77.634056
final value 77.634056
stopped after 100 iterations
Fitting Repeat 5
# weights: 507
initial value 115.967796
iter 10 value 94.466023
iter 20 value 94.114736
iter 30 value 84.795639
iter 40 value 82.166986
iter 50 value 80.635281
iter 60 value 80.378928
iter 70 value 80.057778
iter 80 value 79.805988
iter 90 value 79.728787
iter 100 value 79.630478
final value 79.630478
stopped after 100 iterations
Fitting Repeat 1
# weights: 103
initial value 100.270953
iter 10 value 94.485704
iter 20 value 94.482769
iter 30 value 88.925627
iter 40 value 83.571576
iter 50 value 83.560802
iter 60 value 83.559293
iter 70 value 82.985354
iter 80 value 82.982619
iter 90 value 82.980370
iter 100 value 82.980290
final value 82.980290
stopped after 100 iterations
Fitting Repeat 2
# weights: 103
initial value 96.460768
final value 94.485811
converged
Fitting Repeat 3
# weights: 103
initial value 97.264792
final value 94.485885
converged
Fitting Repeat 4
# weights: 103
initial value 98.315231
final value 94.485881
converged
Fitting Repeat 5
# weights: 103
initial value 99.363530
iter 10 value 94.468451
iter 20 value 94.466872
iter 30 value 94.356029
iter 40 value 92.469526
iter 50 value 91.914313
final value 91.914292
converged
Fitting Repeat 1
# weights: 305
initial value 106.013626
iter 10 value 94.132680
iter 20 value 93.698039
iter 30 value 93.635891
iter 40 value 93.619532
iter 50 value 93.618115
iter 60 value 93.616136
iter 70 value 91.608826
iter 80 value 82.940652
iter 90 value 81.999899
iter 100 value 81.984069
final value 81.984069
stopped after 100 iterations
Fitting Repeat 2
# weights: 305
initial value 100.193188
iter 10 value 94.209551
iter 20 value 94.207261
iter 30 value 87.548703
iter 40 value 86.277571
final value 86.277290
converged
Fitting Repeat 3
# weights: 305
initial value 104.301125
iter 10 value 94.488943
iter 20 value 94.484209
iter 30 value 87.037385
iter 40 value 86.014514
iter 50 value 85.515703
iter 50 value 85.515703
iter 50 value 85.515703
final value 85.515703
converged
Fitting Repeat 4
# weights: 305
initial value 95.243132
iter 10 value 94.488104
iter 20 value 94.484231
final value 94.484221
converged
Fitting Repeat 5
# weights: 305
initial value 111.768889
iter 10 value 94.489201
iter 20 value 94.410576
iter 30 value 86.943059
iter 40 value 83.475336
iter 50 value 83.474878
iter 60 value 83.334121
iter 70 value 82.872528
iter 80 value 81.703373
iter 90 value 81.675655
iter 100 value 81.675311
final value 81.675311
stopped after 100 iterations
Fitting Repeat 1
# weights: 507
initial value 98.076864
iter 10 value 94.153740
iter 20 value 92.986159
iter 30 value 92.065798
iter 40 value 86.908037
iter 50 value 82.215468
iter 60 value 82.196902
iter 70 value 79.319603
iter 80 value 78.984322
iter 90 value 78.972145
iter 100 value 78.971282
final value 78.971282
stopped after 100 iterations
Fitting Repeat 2
# weights: 507
initial value 120.999375
iter 10 value 94.493713
iter 20 value 93.777397
iter 30 value 93.726569
iter 40 value 93.677822
iter 50 value 93.594421
final value 93.593201
converged
Fitting Repeat 3
# weights: 507
initial value 101.079445
iter 10 value 94.442384
iter 20 value 94.435771
final value 94.434835
converged
Fitting Repeat 4
# weights: 507
initial value 106.469051
iter 10 value 94.492114
iter 20 value 94.398934
iter 30 value 83.919181
iter 40 value 77.632410
iter 50 value 77.453501
iter 60 value 76.872963
iter 70 value 76.768088
iter 80 value 76.763786
iter 90 value 76.750686
iter 100 value 76.725342
final value 76.725342
stopped after 100 iterations
Fitting Repeat 5
# weights: 507
initial value 96.219133
iter 10 value 93.852809
iter 20 value 92.370800
iter 30 value 92.095158
final value 92.093612
converged
Fitting Repeat 1
# weights: 103
initial value 95.441965
final value 94.052910
converged
Fitting Repeat 2
# weights: 103
initial value 95.162715
final value 94.052910
converged
Fitting Repeat 3
# weights: 103
initial value 89.114993
iter 10 value 85.618505
iter 20 value 85.101851
iter 30 value 85.065314
iter 40 value 84.660374
iter 50 value 84.649520
final value 84.649496
converged
Fitting Repeat 4
# weights: 103
initial value 101.383637
final value 94.052910
converged
Fitting Repeat 5
# weights: 103
initial value 104.366641
final value 94.052910
converged
Fitting Repeat 1
# weights: 305
initial value 99.189405
final value 94.052910
converged
Fitting Repeat 2
# weights: 305
initial value 104.222847
final value 94.052910
converged
Fitting Repeat 3
# weights: 305
initial value 114.464549
iter 10 value 93.288889
iter 10 value 93.288889
iter 10 value 93.288889
final value 93.288889
converged
Fitting Repeat 4
# weights: 305
initial value 106.597908
final value 94.052910
converged
Fitting Repeat 5
# weights: 305
initial value 119.187315
final value 94.052910
converged
Fitting Repeat 1
# weights: 507
initial value 102.930414
final value 94.052910
converged
Fitting Repeat 2
# weights: 507
initial value 105.743365
final value 93.915746
converged
Fitting Repeat 3
# weights: 507
initial value 125.067525
final value 94.052910
converged
Fitting Repeat 4
# weights: 507
initial value 103.696639
final value 93.900821
converged
Fitting Repeat 5
# weights: 507
initial value 96.089487
iter 10 value 93.324101
iter 20 value 93.288903
final value 93.288889
converged
Fitting Repeat 1
# weights: 103
initial value 104.359676
iter 10 value 94.056749
iter 20 value 93.817989
iter 30 value 90.269718
iter 40 value 88.985028
iter 50 value 85.328406
iter 60 value 84.892155
iter 70 value 83.974542
iter 80 value 83.401491
iter 90 value 83.282656
final value 83.282429
converged
Fitting Repeat 2
# weights: 103
initial value 111.044155
iter 10 value 94.081965
iter 20 value 94.056762
iter 30 value 92.566032
iter 40 value 87.138929
iter 50 value 85.704937
iter 60 value 85.466589
iter 70 value 84.999866
iter 80 value 84.598550
iter 90 value 84.444852
iter 100 value 84.342761
final value 84.342761
stopped after 100 iterations
Fitting Repeat 3
# weights: 103
initial value 98.983962
iter 10 value 94.072824
iter 20 value 94.032023
iter 30 value 92.912743
iter 40 value 89.585885
iter 50 value 88.115621
iter 60 value 86.990100
iter 70 value 84.778762
iter 80 value 84.545899
iter 90 value 84.462862
iter 100 value 83.512613
final value 83.512613
stopped after 100 iterations
Fitting Repeat 4
# weights: 103
initial value 95.983469
iter 10 value 93.652776
iter 20 value 86.644111
iter 30 value 86.196386
iter 40 value 86.020661
iter 50 value 85.886860
iter 60 value 85.825289
final value 85.817533
converged
Fitting Repeat 5
# weights: 103
initial value 100.092750
iter 10 value 94.044606
iter 20 value 93.901844
iter 30 value 90.868308
iter 40 value 85.721967
iter 50 value 85.525759
iter 60 value 85.405755
iter 70 value 85.098100
iter 80 value 85.030998
iter 90 value 83.569817
iter 100 value 83.538198
final value 83.538198
stopped after 100 iterations
Fitting Repeat 1
# weights: 305
initial value 119.141843
iter 10 value 93.888400
iter 20 value 85.831958
iter 30 value 84.074123
iter 40 value 83.001768
iter 50 value 82.585186
iter 60 value 82.325247
iter 70 value 82.176652
iter 80 value 82.137809
iter 90 value 82.121283
iter 100 value 82.039469
final value 82.039469
stopped after 100 iterations
Fitting Repeat 2
# weights: 305
initial value 136.355948
iter 10 value 94.232219
iter 20 value 93.452971
iter 30 value 91.554860
iter 40 value 86.890116
iter 50 value 85.574235
iter 60 value 84.777784
iter 70 value 84.692676
iter 80 value 83.733454
iter 90 value 83.278296
iter 100 value 83.214088
final value 83.214088
stopped after 100 iterations
Fitting Repeat 3
# weights: 305
initial value 103.822806
iter 10 value 94.138908
iter 20 value 94.004283
iter 30 value 93.555548
iter 40 value 88.786520
iter 50 value 86.412162
iter 60 value 86.030055
iter 70 value 84.954507
iter 80 value 84.681649
iter 90 value 84.540824
iter 100 value 84.438495
final value 84.438495
stopped after 100 iterations
Fitting Repeat 4
# weights: 305
initial value 101.023998
iter 10 value 93.774416
iter 20 value 87.755959
iter 30 value 85.691715
iter 40 value 84.426747
iter 50 value 83.026926
iter 60 value 82.643078
iter 70 value 82.398184
iter 80 value 82.099303
iter 90 value 81.937730
iter 100 value 81.873202
final value 81.873202
stopped after 100 iterations
Fitting Repeat 5
# weights: 305
initial value 118.211731
iter 10 value 94.065378
iter 20 value 92.253622
iter 30 value 86.201125
iter 40 value 85.038530
iter 50 value 84.522467
iter 60 value 84.162822
iter 70 value 83.943883
iter 80 value 83.704406
iter 90 value 83.632538
iter 100 value 83.542307
final value 83.542307
stopped after 100 iterations
Fitting Repeat 1
# weights: 507
initial value 126.871111
iter 10 value 93.416979
iter 20 value 86.082755
iter 30 value 85.726914
iter 40 value 84.513919
iter 50 value 83.557435
iter 60 value 83.030977
iter 70 value 82.741306
iter 80 value 82.587986
iter 90 value 82.556243
iter 100 value 82.517304
final value 82.517304
stopped after 100 iterations
Fitting Repeat 2
# weights: 507
initial value 110.294333
iter 10 value 94.733847
iter 20 value 91.027388
iter 30 value 87.180122
iter 40 value 86.369971
iter 50 value 85.650576
iter 60 value 84.370609
iter 70 value 83.186092
iter 80 value 83.030981
iter 90 value 82.543962
iter 100 value 82.332431
final value 82.332431
stopped after 100 iterations
Fitting Repeat 3
# weights: 507
initial value 123.287876
iter 10 value 93.725368
iter 20 value 88.227139
iter 30 value 85.626113
iter 40 value 85.437282
iter 50 value 84.757142
iter 60 value 83.381815
iter 70 value 82.651060
iter 80 value 82.245555
iter 90 value 81.929269
iter 100 value 81.830905
final value 81.830905
stopped after 100 iterations
Fitting Repeat 4
# weights: 507
initial value 106.263780
iter 10 value 93.857302
iter 20 value 86.855933
iter 30 value 84.508486
iter 40 value 83.272865
iter 50 value 83.009976
iter 60 value 82.836202
iter 70 value 82.606991
iter 80 value 82.365799
iter 90 value 82.299828
iter 100 value 82.150713
final value 82.150713
stopped after 100 iterations
Fitting Repeat 5
# weights: 507
initial value 114.106307
iter 10 value 93.616346
iter 20 value 85.857140
iter 30 value 85.479533
iter 40 value 84.891783
iter 50 value 84.518258
iter 60 value 83.634819
iter 70 value 82.882009
iter 80 value 82.461830
iter 90 value 82.328295
iter 100 value 82.213205
final value 82.213205
stopped after 100 iterations
Fitting Repeat 1
# weights: 103
initial value 105.644342
final value 94.054396
converged
Fitting Repeat 2
# weights: 103
initial value 97.392544
final value 94.054527
converged
Fitting Repeat 3
# weights: 103
initial value 99.420748
final value 94.054920
converged
Fitting Repeat 4
# weights: 103
initial value 98.080620
final value 94.054581
converged
Fitting Repeat 5
# weights: 103
initial value 98.618573
final value 94.054632
converged
Fitting Repeat 1
# weights: 305
initial value 95.272194
iter 10 value 94.057662
iter 20 value 92.829332
iter 30 value 92.768751
final value 92.768720
converged
Fitting Repeat 2
# weights: 305
initial value 99.248601
iter 10 value 94.037405
iter 20 value 94.034808
iter 30 value 94.032050
iter 40 value 94.022726
iter 50 value 91.919978
final value 91.919951
converged
Fitting Repeat 3
# weights: 305
initial value 97.046561
iter 10 value 93.296239
iter 20 value 93.291447
iter 30 value 91.042076
iter 40 value 91.005218
final value 91.005128
converged
Fitting Repeat 4
# weights: 305
initial value 97.867256
iter 10 value 94.058323
iter 20 value 93.922768
iter 30 value 93.916096
iter 40 value 93.915980
iter 50 value 93.915942
iter 60 value 93.915865
final value 93.915859
converged
Fitting Repeat 5
# weights: 305
initial value 95.219678
iter 10 value 94.057733
iter 20 value 93.985393
iter 30 value 86.477949
iter 40 value 85.049624
iter 50 value 82.520665
iter 60 value 81.977506
iter 70 value 81.949142
iter 80 value 81.945198
iter 90 value 81.944797
iter 100 value 81.944262
final value 81.944262
stopped after 100 iterations
Fitting Repeat 1
# weights: 507
initial value 100.837655
iter 10 value 94.061139
iter 20 value 93.184982
iter 30 value 86.319967
iter 40 value 85.230146
iter 50 value 85.179186
iter 60 value 85.027541
iter 70 value 84.837539
iter 80 value 84.627732
iter 90 value 81.858856
iter 100 value 81.753249
final value 81.753249
stopped after 100 iterations
Fitting Repeat 2
# weights: 507
initial value 111.726221
iter 10 value 92.841190
iter 20 value 92.820978
iter 30 value 88.790997
iter 40 value 88.696767
iter 50 value 88.149620
iter 60 value 87.947395
iter 70 value 87.943857
iter 80 value 84.712963
iter 90 value 84.365184
iter 100 value 84.355132
final value 84.355132
stopped after 100 iterations
Fitting Repeat 3
# weights: 507
initial value 103.341685
iter 10 value 93.874567
iter 20 value 93.869099
iter 30 value 93.867064
iter 40 value 93.866292
final value 93.866244
converged
Fitting Repeat 4
# weights: 507
initial value 105.895849
iter 10 value 94.060769
iter 20 value 93.831939
iter 30 value 85.180849
iter 40 value 85.024200
iter 50 value 85.017907
final value 85.017816
converged
Fitting Repeat 5
# weights: 507
initial value 96.240138
iter 10 value 94.059809
iter 20 value 93.497220
iter 30 value 87.445244
iter 40 value 87.398220
final value 87.398126
converged
Fitting Repeat 1
# weights: 103
initial value 98.722061
final value 94.214007
converged
Fitting Repeat 2
# weights: 103
initial value 95.219452
final value 94.484211
converged
Fitting Repeat 3
# weights: 103
initial value 98.651213
final value 94.484211
converged
Fitting Repeat 4
# weights: 103
initial value 95.616427
final value 94.484211
converged
Fitting Repeat 5
# weights: 103
initial value 108.010926
final value 94.484211
converged
Fitting Repeat 1
# weights: 305
initial value 102.041845
iter 10 value 92.877855
iter 20 value 87.199042
iter 30 value 86.659959
iter 40 value 86.658513
final value 86.658512
converged
Fitting Repeat 2
# weights: 305
initial value 114.144497
iter 10 value 85.971132
iter 20 value 85.951717
iter 20 value 85.951717
iter 20 value 85.951717
final value 85.951717
converged
Fitting Repeat 3
# weights: 305
initial value 101.164355
final value 94.484211
converged
Fitting Repeat 4
# weights: 305
initial value 104.361878
final value 94.291892
converged
Fitting Repeat 5
# weights: 305
initial value 98.682744
final value 94.484211
converged
Fitting Repeat 1
# weights: 507
initial value 103.000049
iter 10 value 91.902211
iter 20 value 83.584596
iter 30 value 83.583984
iter 40 value 83.583820
iter 40 value 83.583819
iter 40 value 83.583819
final value 83.583819
converged
Fitting Repeat 2
# weights: 507
initial value 95.447351
final value 93.809648
converged
Fitting Repeat 3
# weights: 507
initial value 111.852652
iter 10 value 93.656165
final value 93.643491
converged
Fitting Repeat 4
# weights: 507
initial value 111.974638
iter 10 value 93.796866
final value 93.795946
converged
Fitting Repeat 5
# weights: 507
initial value 110.590122
iter 10 value 92.774174
iter 20 value 86.165571
iter 30 value 85.266993
iter 40 value 84.892070
iter 50 value 84.891462
final value 84.891458
converged
Fitting Repeat 1
# weights: 103
initial value 96.931427
iter 10 value 94.451644
iter 20 value 93.768953
iter 30 value 93.069432
iter 40 value 93.020598
iter 50 value 93.013171
iter 60 value 93.012245
iter 70 value 86.620831
iter 80 value 84.510340
iter 90 value 83.585768
iter 100 value 83.518931
final value 83.518931
stopped after 100 iterations
Fitting Repeat 2
# weights: 103
initial value 102.369360
iter 10 value 94.488575
iter 20 value 88.464046
iter 30 value 87.694984
iter 40 value 86.842671
iter 50 value 85.459250
iter 60 value 85.344033
iter 70 value 85.240076
final value 85.239569
converged
Fitting Repeat 3
# weights: 103
initial value 114.265625
iter 10 value 94.385331
iter 20 value 93.045984
iter 30 value 91.839315
iter 40 value 90.981410
iter 50 value 90.891773
iter 60 value 90.874496
final value 90.874455
converged
Fitting Repeat 4
# weights: 103
initial value 107.487567
iter 10 value 94.479456
iter 20 value 93.943325
iter 30 value 93.838021
iter 40 value 93.767392
iter 50 value 93.738328
iter 60 value 84.923971
iter 70 value 82.878238
iter 80 value 80.981196
iter 90 value 80.036129
iter 100 value 79.592165
final value 79.592165
stopped after 100 iterations
Fitting Repeat 5
# weights: 103
initial value 101.457531
iter 10 value 94.353595
iter 20 value 93.841149
iter 30 value 93.644289
iter 40 value 85.224884
iter 50 value 84.779419
iter 60 value 84.752477
iter 70 value 84.621421
iter 80 value 84.562076
iter 90 value 83.836064
iter 100 value 83.574393
final value 83.574393
stopped after 100 iterations
Fitting Repeat 1
# weights: 305
initial value 126.494708
iter 10 value 95.178704
iter 20 value 89.280742
iter 30 value 87.841787
iter 40 value 87.688597
iter 50 value 87.125510
iter 60 value 86.301921
iter 70 value 82.765761
iter 80 value 81.298929
iter 90 value 79.188625
iter 100 value 78.809974
final value 78.809974
stopped after 100 iterations
Fitting Repeat 2
# weights: 305
initial value 110.580089
iter 10 value 93.526187
iter 20 value 86.228359
iter 30 value 84.626671
iter 40 value 84.223094
iter 50 value 83.943529
iter 60 value 81.058944
iter 70 value 80.222298
iter 80 value 79.694751
iter 90 value 78.889500
iter 100 value 78.442814
final value 78.442814
stopped after 100 iterations
Fitting Repeat 3
# weights: 305
initial value 102.263878
iter 10 value 94.743480
iter 20 value 94.412730
iter 30 value 91.253461
iter 40 value 90.247911
iter 50 value 86.914732
iter 60 value 84.321135
iter 70 value 84.146913
iter 80 value 84.129969
iter 90 value 83.595821
iter 100 value 79.965395
final value 79.965395
stopped after 100 iterations
Fitting Repeat 4
# weights: 305
initial value 101.471334
iter 10 value 94.454820
iter 20 value 90.070130
iter 30 value 86.511469
iter 40 value 84.233902
iter 50 value 83.998723
iter 60 value 83.349141
iter 70 value 83.178365
iter 80 value 82.898465
iter 90 value 81.158352
iter 100 value 79.456211
final value 79.456211
stopped after 100 iterations
Fitting Repeat 5
# weights: 305
initial value 103.537343
iter 10 value 93.957901
iter 20 value 86.244907
iter 30 value 85.639324
iter 40 value 83.999700
iter 50 value 83.171769
iter 60 value 82.790148
iter 70 value 81.205923
iter 80 value 80.615018
iter 90 value 79.918141
iter 100 value 79.280069
final value 79.280069
stopped after 100 iterations
Fitting Repeat 1
# weights: 507
initial value 110.495616
iter 10 value 94.642176
iter 20 value 91.619207
iter 30 value 90.321919
iter 40 value 86.500743
iter 50 value 83.124429
iter 60 value 80.969579
iter 70 value 80.441301
iter 80 value 80.056376
iter 90 value 79.992863
iter 100 value 79.896331
final value 79.896331
stopped after 100 iterations
Fitting Repeat 2
# weights: 507
initial value 103.489769
iter 10 value 94.590092
iter 20 value 89.301431
iter 30 value 86.843448
iter 40 value 85.839809
iter 50 value 83.783160
iter 60 value 83.106882
iter 70 value 81.053335
iter 80 value 79.196215
iter 90 value 78.510165
iter 100 value 78.315973
final value 78.315973
stopped after 100 iterations
Fitting Repeat 3
# weights: 507
initial value 115.636004
iter 10 value 94.356164
iter 20 value 86.086025
iter 30 value 85.649188
iter 40 value 83.049665
iter 50 value 80.948304
iter 60 value 80.366245
iter 70 value 79.609214
iter 80 value 79.239821
iter 90 value 79.195667
iter 100 value 78.956676
final value 78.956676
stopped after 100 iterations
Fitting Repeat 4
# weights: 507
initial value 107.900843
iter 10 value 97.017629
iter 20 value 92.880367
iter 30 value 85.390535
iter 40 value 84.701484
iter 50 value 80.943305
iter 60 value 80.260816
iter 70 value 79.886761
iter 80 value 79.622425
iter 90 value 79.399997
iter 100 value 79.195575
final value 79.195575
stopped after 100 iterations
Fitting Repeat 5
# weights: 507
initial value 103.577997
iter 10 value 94.556471
iter 20 value 94.089798
iter 30 value 91.214356
iter 40 value 89.501616
iter 50 value 88.215146
iter 60 value 83.545201
iter 70 value 80.736742
iter 80 value 80.334169
iter 90 value 79.996556
iter 100 value 79.663112
final value 79.663112
stopped after 100 iterations
Fitting Repeat 1
# weights: 103
initial value 98.675802
final value 94.485934
converged
Fitting Repeat 2
# weights: 103
initial value 94.992952
final value 94.485810
converged
Fitting Repeat 3
# weights: 103
initial value 101.510917
iter 10 value 91.682028
iter 20 value 91.501331
iter 30 value 85.306770
iter 40 value 85.166463
iter 50 value 85.154714
iter 60 value 84.792278
final value 84.725993
converged
Fitting Repeat 4
# weights: 103
initial value 109.554712
final value 94.485668
converged
Fitting Repeat 5
# weights: 103
initial value 114.084634
final value 94.485935
converged
Fitting Repeat 1
# weights: 305
initial value 94.800775
iter 10 value 94.483054
iter 20 value 94.221846
iter 30 value 84.675885
iter 40 value 82.715600
iter 50 value 82.583070
iter 60 value 82.550682
iter 70 value 82.405083
iter 80 value 82.403203
iter 90 value 82.402959
iter 100 value 82.402617
final value 82.402617
stopped after 100 iterations
Fitting Repeat 2
# weights: 305
initial value 105.676832
iter 10 value 94.488590
iter 20 value 94.044969
iter 30 value 92.213052
iter 40 value 92.212380
iter 50 value 92.210953
iter 60 value 92.177085
iter 70 value 92.173281
iter 80 value 92.172647
final value 92.172642
converged
Fitting Repeat 3
# weights: 305
initial value 105.888249
iter 10 value 94.488429
iter 20 value 94.484344
iter 30 value 94.307611
final value 94.292578
converged
Fitting Repeat 4
# weights: 305
initial value 105.552862
iter 10 value 94.489330
iter 20 value 94.484078
iter 30 value 94.129165
iter 40 value 86.799816
iter 50 value 86.790023
iter 60 value 85.248936
iter 70 value 84.800690
iter 80 value 83.632353
iter 90 value 83.202544
iter 100 value 83.154594
final value 83.154594
stopped after 100 iterations
Fitting Repeat 5
# weights: 305
initial value 130.284419
iter 10 value 94.488930
iter 20 value 94.369929
iter 30 value 86.201555
iter 40 value 86.082108
iter 50 value 85.822903
iter 60 value 85.185662
iter 70 value 85.178752
final value 85.178034
converged
Fitting Repeat 1
# weights: 507
initial value 108.996608
iter 10 value 94.299696
iter 20 value 94.290260
iter 30 value 94.176286
iter 40 value 93.748983
iter 50 value 93.451426
final value 93.434667
converged
Fitting Repeat 2
# weights: 507
initial value 103.273762
iter 10 value 94.492672
iter 20 value 94.484499
iter 30 value 88.984558
iter 40 value 88.914273
iter 50 value 84.683205
iter 60 value 82.916940
iter 70 value 82.909511
iter 80 value 82.907807
iter 90 value 82.877370
iter 100 value 82.818956
final value 82.818956
stopped after 100 iterations
Fitting Repeat 3
# weights: 507
initial value 107.602077
iter 10 value 94.299843
iter 20 value 94.292892
final value 94.292120
converged
Fitting Repeat 4
# weights: 507
initial value 116.411136
iter 10 value 94.492755
iter 20 value 94.484656
iter 30 value 86.546026
iter 40 value 86.500888
iter 50 value 85.352133
final value 85.307103
converged
Fitting Repeat 5
# weights: 507
initial value 105.170429
iter 10 value 94.491142
iter 20 value 94.479660
iter 30 value 93.946640
iter 40 value 93.458539
final value 93.364349
converged
Fitting Repeat 1
# weights: 507
initial value 145.531741
iter 10 value 117.850903
iter 20 value 114.260704
iter 30 value 109.564729
iter 40 value 109.166352
iter 50 value 109.156709
iter 50 value 109.156708
iter 50 value 109.156708
final value 109.156708
converged
Fitting Repeat 2
# weights: 507
initial value 154.081211
iter 10 value 117.737766
iter 20 value 116.362571
iter 30 value 105.380428
iter 40 value 105.368640
iter 50 value 105.351278
iter 60 value 105.317480
iter 70 value 103.536387
iter 80 value 102.778194
iter 90 value 102.669547
iter 100 value 102.579392
final value 102.579392
stopped after 100 iterations
Fitting Repeat 3
# weights: 507
initial value 136.104887
iter 10 value 117.766929
iter 20 value 117.653996
iter 30 value 117.511332
iter 40 value 116.884388
iter 50 value 114.642922
iter 60 value 105.635840
iter 70 value 105.354485
final value 105.354235
converged
Fitting Repeat 4
# weights: 507
initial value 125.043461
iter 10 value 117.898748
iter 20 value 117.890357
iter 30 value 114.748948
iter 40 value 108.537044
iter 50 value 108.528186
iter 60 value 105.352701
final value 105.342087
converged
Fitting Repeat 5
# weights: 507
initial value 120.245861
iter 10 value 117.767115
iter 20 value 117.678060
iter 30 value 110.857731
iter 40 value 104.682901
iter 50 value 103.034025
iter 60 value 102.624402
final value 102.623775
converged
svmRadial
ranger
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls < cases
Setting levels: control = Positive, case = Negative
Setting direction: controls < cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls < cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls < cases
Setting levels: control = Positive, case = Negative
Setting direction: controls < cases
Setting levels: control = Positive, case = Negative
Setting direction: controls < cases
Setting levels: control = Positive, case = Negative
Setting direction: controls < cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
RUNIT TEST PROTOCOL -- Thu Mar 5 20:25:41 2026
***********************************************
Number of test functions: 7
Number of errors: 0
Number of failures: 0
1 Test Suite :
HPiP RUnit Tests - 7 test functions, 0 errors, 0 failures
Number of test functions: 7
Number of errors: 0
Number of failures: 0
Warning messages:
1: `repeats` has no meaning for this resampling method.
2: executing %dopar% sequentially: no parallel backend registered
>
>
>
>
> proc.time()
user system elapsed
20.520 0.486 75.889
HPiP.Rcheck/HPiP-Ex.timings
| name | user | system | elapsed | |
| FSmethod | 19.200 | 0.922 | 20.868 | |
| FreqInteractors | 0.161 | 0.011 | 0.187 | |
| calculateAAC | 0.013 | 0.002 | 0.015 | |
| calculateAutocor | 0.133 | 0.021 | 0.159 | |
| calculateCTDC | 0.036 | 0.003 | 0.039 | |
| calculateCTDD | 0.166 | 0.007 | 0.183 | |
| calculateCTDT | 0.065 | 0.004 | 0.071 | |
| calculateCTriad | 0.170 | 0.013 | 0.200 | |
| calculateDC | 0.033 | 0.004 | 0.044 | |
| calculateF | 0.112 | 0.003 | 0.123 | |
| calculateKSAAP | 0.033 | 0.004 | 0.039 | |
| calculateQD_Sm | 0.875 | 0.067 | 0.950 | |
| calculateTC | 0.569 | 0.052 | 0.751 | |
| calculateTC_Sm | 0.132 | 0.009 | 0.234 | |
| corr_plot | 19.056 | 0.865 | 20.345 | |
| enrichfindP | 0.206 | 0.037 | 12.042 | |
| enrichfind_hp | 0.015 | 0.003 | 1.722 | |
| enrichplot | 0.175 | 0.011 | 0.190 | |
| filter_missing_values | 0.001 | 0.000 | 0.000 | |
| getFASTA | 0.030 | 0.006 | 3.503 | |
| getHPI | 0.000 | 0.001 | 0.000 | |
| get_negativePPI | 0.001 | 0.000 | 0.000 | |
| get_positivePPI | 0 | 0 | 0 | |
| impute_missing_data | 0.001 | 0.000 | 0.000 | |
| plotPPI | 0.040 | 0.001 | 0.043 | |
| pred_ensembel | 6.496 | 0.115 | 6.107 | |
| var_imp | 18.650 | 1.004 | 20.544 | |