| Back to Multiple platform build/check report for BioC 3.23: simplified long |
|
This page was generated on 2026-04-11 11:37 -0400 (Sat, 11 Apr 2026).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 24.04.4 LTS) | x86_64 | 4.6.0 alpha (2026-04-05 r89794) | 4919 |
| kjohnson3 | macOS 13.7.7 Ventura | arm64 | 4.6.0 alpha (2026-04-08 r89818) | 4631 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 1020/2390 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| HPiP 1.17.2 (landing page) Matineh Rahmatbakhsh
| nebbiolo1 | Linux (Ubuntu 24.04.4 LTS) / x86_64 | OK | OK | OK | |||||||||
| kjohnson3 | macOS 13.7.7 Ventura / arm64 | OK | OK | OK | OK | |||||||||
| See other builds for HPiP in R Universe. | ||||||||||||||
|
To the developers/maintainers of the HPiP package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/HPiP.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: HPiP |
| Version: 1.17.2 |
| Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:HPiP.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings HPiP_1.17.2.tar.gz |
| StartedAt: 2026-04-10 20:37:16 -0400 (Fri, 10 Apr 2026) |
| EndedAt: 2026-04-10 20:40:45 -0400 (Fri, 10 Apr 2026) |
| EllapsedTime: 209.6 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: HPiP.Rcheck |
| Warnings: 0 |
##############################################################################
##############################################################################
###
### Running command:
###
### /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:HPiP.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings HPiP_1.17.2.tar.gz
###
##############################################################################
##############################################################################
* using log directory ‘/Users/biocbuild/bbs-3.23-bioc/meat/HPiP.Rcheck’
* using R version 4.6.0 alpha (2026-04-08 r89818)
* using platform: aarch64-apple-darwin23
* R was compiled by
Apple clang version 17.0.0 (clang-1700.3.19.1)
GNU Fortran (GCC) 14.2.0
* running under: macOS Tahoe 26.3.1
* using session charset: UTF-8
* current time: 2026-04-11 00:37:16 UTC
* using option ‘--no-vignettes’
* checking for file ‘HPiP/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘HPiP’ version ‘1.17.2’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘HPiP’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... NOTE
License stub is invalid DCF.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... NOTE
checkRd: (-1) getHPI.Rd:29: Lost braces
29 | then the Kronecker product is the code{(pm × qn)} block matrix
| ^
* checking Rd metadata ... OK
* checking Rd cross-references ... INFO
Package unavailable to check Rd xrefs: ‘ftrCOOL’
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking R/sysdata.rda ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
var_imp 17.256 0.209 17.688
corr_plot 17.157 0.115 17.344
FSmethod 16.652 0.098 17.052
pred_ensembel 6.137 0.160 5.560
enrichfindP 0.203 0.045 15.299
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
Running ‘runTests.R’
OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: 2 NOTEs
See
‘/Users/biocbuild/bbs-3.23-bioc/meat/HPiP.Rcheck/00check.log’
for details.
HPiP.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL HPiP ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/4.6/Resources/library’ * installing *source* package ‘HPiP’ ... ** this is package ‘HPiP’ version ‘1.17.2’ ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (HPiP)
HPiP.Rcheck/tests/runTests.Rout
R version 4.6.0 alpha (2026-04-08 r89818)
Copyright (C) 2026 The R Foundation for Statistical Computing
Platform: aarch64-apple-darwin23
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> BiocGenerics:::testPackage('HPiP')
No results to show
Please make sure that the organism is correct or set significant = FALSE
No results to show
Please make sure that the organism is correct or set significant = FALSE
No results to show
Please make sure that the organism is correct or set significant = FALSE
No results to show
Please make sure that the organism is correct or set significant = FALSE
No results to show
Please make sure that the organism is correct or set significant = FALSE
No results to show
Please make sure that the organism is correct or set significant = FALSE
No results to show
Please make sure that the organism is correct or set significant = FALSE
avNNet
Loading required package: ggplot2
Loading required package: lattice
Fitting Repeat 1
# weights: 103
initial value 96.806503
final value 94.484211
converged
Fitting Repeat 2
# weights: 103
initial value 113.829836
final value 94.484211
converged
Fitting Repeat 3
# weights: 103
initial value 102.867211
final value 94.484211
converged
Fitting Repeat 4
# weights: 103
initial value 104.619101
final value 94.484211
converged
Fitting Repeat 5
# weights: 103
initial value 104.178680
final value 94.484211
converged
Fitting Repeat 1
# weights: 305
initial value 102.563527
iter 10 value 91.444230
iter 20 value 86.619464
iter 30 value 86.579886
iter 40 value 86.405595
iter 50 value 86.399664
final value 86.399659
converged
Fitting Repeat 2
# weights: 305
initial value 95.650963
iter 10 value 94.484309
final value 94.484211
converged
Fitting Repeat 3
# weights: 305
initial value 95.905535
final value 94.484211
converged
Fitting Repeat 4
# weights: 305
initial value 97.392844
iter 10 value 93.198667
iter 20 value 91.326767
final value 91.322383
converged
Fitting Repeat 5
# weights: 305
initial value 112.823833
final value 94.484211
converged
Fitting Repeat 1
# weights: 507
initial value 100.039802
final value 94.484211
converged
Fitting Repeat 2
# weights: 507
initial value 108.807119
final value 94.484211
converged
Fitting Repeat 3
# weights: 507
initial value 109.156948
iter 10 value 94.122408
iter 20 value 94.102129
final value 94.102127
converged
Fitting Repeat 4
# weights: 507
initial value 103.282233
final value 94.484211
converged
Fitting Repeat 5
# weights: 507
initial value 100.433615
final value 94.400000
converged
Fitting Repeat 1
# weights: 103
initial value 97.691807
iter 10 value 94.479585
iter 20 value 87.512230
iter 30 value 86.913346
iter 40 value 84.926707
iter 50 value 84.592689
iter 60 value 84.537681
iter 70 value 84.479597
iter 80 value 84.260510
iter 90 value 84.065893
iter 100 value 84.032113
final value 84.032113
stopped after 100 iterations
Fitting Repeat 2
# weights: 103
initial value 97.714503
iter 10 value 94.517564
iter 20 value 94.465602
iter 30 value 94.203141
iter 40 value 85.235637
iter 50 value 84.700867
iter 60 value 83.895224
iter 70 value 83.318702
iter 80 value 83.122143
iter 90 value 83.098924
final value 83.097258
converged
Fitting Repeat 3
# weights: 103
initial value 117.560659
iter 10 value 94.639490
iter 20 value 93.727819
iter 30 value 85.203593
iter 40 value 84.564582
iter 50 value 84.471342
iter 60 value 84.454520
iter 70 value 84.142501
iter 80 value 84.046805
iter 90 value 84.012257
final value 84.012240
converged
Fitting Repeat 4
# weights: 103
initial value 100.005340
iter 10 value 94.478363
iter 20 value 92.609272
iter 30 value 88.545072
iter 40 value 88.328065
iter 50 value 84.600729
iter 60 value 83.166363
iter 70 value 82.558395
iter 80 value 81.335248
iter 90 value 81.092542
iter 100 value 80.796020
final value 80.796020
stopped after 100 iterations
Fitting Repeat 5
# weights: 103
initial value 106.368427
iter 10 value 94.487497
iter 20 value 94.409795
iter 30 value 91.509791
iter 40 value 88.908310
iter 50 value 86.346586
iter 60 value 85.025003
iter 70 value 84.682132
iter 80 value 84.212650
iter 90 value 83.520389
iter 100 value 83.151919
final value 83.151919
stopped after 100 iterations
Fitting Repeat 1
# weights: 305
initial value 112.850854
iter 10 value 93.741475
iter 20 value 87.570159
iter 30 value 86.409423
iter 40 value 85.464244
iter 50 value 84.106354
iter 60 value 83.479418
iter 70 value 83.344886
iter 80 value 83.230502
iter 90 value 81.938435
iter 100 value 80.574786
final value 80.574786
stopped after 100 iterations
Fitting Repeat 2
# weights: 305
initial value 106.877750
iter 10 value 94.388547
iter 20 value 88.555822
iter 30 value 82.576990
iter 40 value 80.667723
iter 50 value 80.061577
iter 60 value 79.899151
iter 70 value 79.796226
iter 80 value 79.728580
iter 90 value 79.355141
iter 100 value 78.996360
final value 78.996360
stopped after 100 iterations
Fitting Repeat 3
# weights: 305
initial value 124.192540
iter 10 value 94.495324
iter 20 value 93.301333
iter 30 value 87.177027
iter 40 value 83.914443
iter 50 value 83.684987
iter 60 value 83.491624
iter 70 value 83.059954
iter 80 value 82.259076
iter 90 value 82.056589
iter 100 value 82.051774
final value 82.051774
stopped after 100 iterations
Fitting Repeat 4
# weights: 305
initial value 100.634450
iter 10 value 94.539285
iter 20 value 93.999321
iter 30 value 86.840239
iter 40 value 85.864832
iter 50 value 84.321863
iter 60 value 83.009374
iter 70 value 81.966094
iter 80 value 81.652960
iter 90 value 81.540653
iter 100 value 81.473924
final value 81.473924
stopped after 100 iterations
Fitting Repeat 5
# weights: 305
initial value 109.721098
iter 10 value 94.389937
iter 20 value 87.132758
iter 30 value 85.060374
iter 40 value 83.964984
iter 50 value 82.860573
iter 60 value 80.973298
iter 70 value 80.871135
iter 80 value 80.855768
iter 90 value 80.582074
iter 100 value 80.436986
final value 80.436986
stopped after 100 iterations
Fitting Repeat 1
# weights: 507
initial value 131.061790
iter 10 value 97.552279
iter 20 value 91.819699
iter 30 value 87.914960
iter 40 value 84.587049
iter 50 value 83.419968
iter 60 value 81.523679
iter 70 value 81.263655
iter 80 value 80.624178
iter 90 value 80.198182
iter 100 value 79.949819
final value 79.949819
stopped after 100 iterations
Fitting Repeat 2
# weights: 507
initial value 103.438994
iter 10 value 94.556315
iter 20 value 90.488665
iter 30 value 83.713333
iter 40 value 81.909601
iter 50 value 81.335474
iter 60 value 80.896685
iter 70 value 80.746283
iter 80 value 80.270098
iter 90 value 79.750033
iter 100 value 79.601294
final value 79.601294
stopped after 100 iterations
Fitting Repeat 3
# weights: 507
initial value 111.348255
iter 10 value 93.108902
iter 20 value 86.317664
iter 30 value 81.374498
iter 40 value 80.044130
iter 50 value 79.525745
iter 60 value 78.851275
iter 70 value 78.739689
iter 80 value 78.603908
iter 90 value 78.516124
iter 100 value 78.488620
final value 78.488620
stopped after 100 iterations
Fitting Repeat 4
# weights: 507
initial value 106.397021
iter 10 value 99.280878
iter 20 value 90.147372
iter 30 value 85.999205
iter 40 value 82.281494
iter 50 value 82.025573
iter 60 value 80.875056
iter 70 value 80.669609
iter 80 value 80.443164
iter 90 value 80.095302
iter 100 value 79.737599
final value 79.737599
stopped after 100 iterations
Fitting Repeat 5
# weights: 507
initial value 107.040666
iter 10 value 94.613768
iter 20 value 94.160516
iter 30 value 86.804670
iter 40 value 84.605939
iter 50 value 83.946888
iter 60 value 82.678152
iter 70 value 82.378478
iter 80 value 82.051479
iter 90 value 81.637169
iter 100 value 80.917013
final value 80.917013
stopped after 100 iterations
Fitting Repeat 1
# weights: 103
initial value 96.356431
final value 94.485979
converged
Fitting Repeat 2
# weights: 103
initial value 96.531291
final value 94.485588
converged
Fitting Repeat 3
# weights: 103
initial value 100.446794
iter 10 value 94.486190
iter 20 value 94.483838
iter 30 value 84.894694
iter 40 value 83.745276
iter 50 value 83.518939
iter 60 value 83.513611
iter 70 value 83.507301
iter 80 value 83.472480
iter 90 value 83.471193
final value 83.470772
converged
Fitting Repeat 4
# weights: 103
initial value 97.962467
final value 94.485578
converged
Fitting Repeat 5
# weights: 103
initial value 101.768535
iter 10 value 94.485843
iter 20 value 94.484303
iter 30 value 94.370263
iter 40 value 94.063374
final value 94.063369
converged
Fitting Repeat 1
# weights: 305
initial value 100.256993
iter 10 value 94.489251
iter 20 value 94.484258
final value 94.484241
converged
Fitting Repeat 2
# weights: 305
initial value 110.563579
iter 10 value 94.489379
iter 20 value 94.484482
iter 30 value 94.096724
iter 40 value 93.860058
iter 50 value 89.843631
iter 60 value 89.808150
iter 70 value 88.004467
iter 80 value 87.953678
iter 90 value 87.952445
iter 100 value 87.911491
final value 87.911491
stopped after 100 iterations
Fitting Repeat 3
# weights: 305
initial value 101.727101
iter 10 value 94.489107
iter 20 value 94.189208
iter 30 value 92.092917
iter 40 value 92.087527
final value 92.087513
converged
Fitting Repeat 4
# weights: 305
initial value 96.374979
iter 10 value 94.390390
iter 20 value 94.131623
iter 30 value 92.546688
iter 40 value 92.442202
iter 50 value 88.105204
iter 60 value 78.807923
iter 70 value 78.320921
iter 80 value 78.219859
iter 90 value 77.972441
iter 100 value 77.823983
final value 77.823983
stopped after 100 iterations
Fitting Repeat 5
# weights: 305
initial value 100.955066
iter 10 value 94.283085
iter 20 value 93.606405
iter 30 value 93.604487
iter 40 value 93.602764
iter 50 value 91.311695
iter 60 value 84.366742
iter 70 value 83.555868
iter 80 value 83.032387
iter 90 value 83.032261
final value 83.032221
converged
Fitting Repeat 1
# weights: 507
initial value 110.953029
iter 10 value 94.175622
iter 20 value 93.637857
iter 30 value 90.358345
iter 40 value 90.330018
iter 50 value 90.322006
iter 60 value 87.633786
iter 70 value 87.295433
iter 80 value 82.930057
iter 90 value 81.121952
iter 100 value 81.015703
final value 81.015703
stopped after 100 iterations
Fitting Repeat 2
# weights: 507
initial value 103.732102
iter 10 value 93.585649
iter 20 value 92.925942
iter 30 value 92.919825
iter 40 value 92.900060
iter 50 value 92.898971
iter 60 value 92.897821
iter 70 value 92.841597
iter 80 value 92.809988
iter 90 value 92.744059
iter 100 value 92.618345
final value 92.618345
stopped after 100 iterations
Fitting Repeat 3
# weights: 507
initial value 118.316526
iter 10 value 94.474616
iter 20 value 94.208208
iter 30 value 82.240447
iter 40 value 79.351497
iter 50 value 78.394429
iter 60 value 78.231267
iter 70 value 78.175303
iter 80 value 78.163380
iter 90 value 78.162925
final value 78.162909
converged
Fitting Repeat 4
# weights: 507
initial value 110.541254
iter 10 value 94.491927
iter 20 value 94.482934
iter 30 value 85.979645
iter 40 value 82.501688
iter 50 value 79.874361
iter 60 value 78.256360
iter 70 value 78.239561
iter 80 value 78.238654
iter 90 value 78.238045
iter 100 value 78.237540
final value 78.237540
stopped after 100 iterations
Fitting Repeat 5
# weights: 507
initial value 102.138885
iter 10 value 94.492622
iter 20 value 88.556895
iter 30 value 84.829123
final value 84.824280
converged
Fitting Repeat 1
# weights: 103
initial value 100.138995
final value 94.052910
converged
Fitting Repeat 2
# weights: 103
initial value 102.262641
final value 94.052910
converged
Fitting Repeat 3
# weights: 103
initial value 101.549823
final value 94.052910
converged
Fitting Repeat 4
# weights: 103
initial value 99.192866
final value 93.935065
converged
Fitting Repeat 5
# weights: 103
initial value 105.345145
final value 94.052910
converged
Fitting Repeat 1
# weights: 305
initial value 104.819430
final value 94.052910
converged
Fitting Repeat 2
# weights: 305
initial value 99.207323
final value 93.582418
converged
Fitting Repeat 3
# weights: 305
initial value 98.257754
final value 94.052910
converged
Fitting Repeat 4
# weights: 305
initial value 97.759371
final value 94.052910
converged
Fitting Repeat 5
# weights: 305
initial value 92.434373
iter 10 value 85.665181
iter 20 value 80.534165
final value 80.533303
converged
Fitting Repeat 1
# weights: 507
initial value 96.725298
iter 10 value 90.717155
iter 20 value 89.372542
iter 30 value 89.060709
iter 40 value 88.669663
iter 50 value 88.590902
iter 60 value 88.534068
iter 70 value 86.137834
iter 80 value 85.428222
final value 85.364013
converged
Fitting Repeat 2
# weights: 507
initial value 105.083067
final value 93.582418
converged
Fitting Repeat 3
# weights: 507
initial value 122.776755
final value 94.052910
converged
Fitting Repeat 4
# weights: 507
initial value 114.584630
final value 94.052910
converged
Fitting Repeat 5
# weights: 507
initial value 94.842900
final value 94.025289
converged
Fitting Repeat 1
# weights: 103
initial value 97.416887
iter 10 value 93.937708
iter 20 value 93.446840
iter 30 value 85.715602
iter 40 value 84.027461
iter 50 value 83.376766
iter 60 value 81.755116
iter 70 value 79.837764
iter 80 value 79.105958
iter 90 value 78.991263
iter 100 value 78.609481
final value 78.609481
stopped after 100 iterations
Fitting Repeat 2
# weights: 103
initial value 99.609395
iter 10 value 94.056681
iter 20 value 93.404544
iter 30 value 85.049762
iter 40 value 82.580424
iter 50 value 82.142629
iter 60 value 81.831613
iter 70 value 81.664200
iter 80 value 81.381456
final value 81.379342
converged
Fitting Repeat 3
# weights: 103
initial value 103.922796
iter 10 value 94.342220
iter 20 value 88.239099
iter 30 value 85.416149
iter 40 value 83.594468
iter 50 value 83.251603
iter 60 value 83.242690
iter 70 value 83.234138
iter 80 value 83.058966
iter 90 value 82.683662
iter 100 value 80.328699
final value 80.328699
stopped after 100 iterations
Fitting Repeat 4
# weights: 103
initial value 104.040145
iter 10 value 94.027981
iter 20 value 93.547761
iter 30 value 93.508810
iter 40 value 93.482746
iter 50 value 90.034036
iter 60 value 82.477846
iter 70 value 81.761179
iter 80 value 81.194470
iter 90 value 81.080961
iter 100 value 80.928357
final value 80.928357
stopped after 100 iterations
Fitting Repeat 5
# weights: 103
initial value 105.883305
iter 10 value 94.055718
iter 20 value 93.614825
iter 30 value 93.458861
iter 40 value 84.775935
iter 50 value 83.982942
iter 60 value 83.074705
iter 70 value 82.312486
iter 80 value 82.169041
iter 90 value 82.103521
iter 100 value 82.073269
final value 82.073269
stopped after 100 iterations
Fitting Repeat 1
# weights: 305
initial value 125.197123
iter 10 value 93.936960
iter 20 value 93.472099
iter 30 value 93.408565
iter 40 value 92.742277
iter 50 value 84.090635
iter 60 value 83.046889
iter 70 value 81.950920
iter 80 value 81.389645
iter 90 value 81.296536
iter 100 value 81.062707
final value 81.062707
stopped after 100 iterations
Fitting Repeat 2
# weights: 305
initial value 102.085741
iter 10 value 94.124587
iter 20 value 91.204261
iter 30 value 83.919700
iter 40 value 83.613289
iter 50 value 81.384436
iter 60 value 79.182194
iter 70 value 78.165982
iter 80 value 77.575262
iter 90 value 77.273535
iter 100 value 77.154358
final value 77.154358
stopped after 100 iterations
Fitting Repeat 3
# weights: 305
initial value 103.644655
iter 10 value 93.835587
iter 20 value 81.895330
iter 30 value 81.296948
iter 40 value 80.384730
iter 50 value 79.398657
iter 60 value 78.617213
iter 70 value 78.029836
iter 80 value 77.734454
iter 90 value 77.445186
iter 100 value 77.205113
final value 77.205113
stopped after 100 iterations
Fitting Repeat 4
# weights: 305
initial value 101.769430
iter 10 value 94.184341
iter 20 value 93.495667
iter 30 value 93.363672
iter 40 value 85.878926
iter 50 value 85.749086
iter 60 value 85.554239
iter 70 value 81.225204
iter 80 value 79.800319
iter 90 value 79.292389
iter 100 value 79.075992
final value 79.075992
stopped after 100 iterations
Fitting Repeat 5
# weights: 305
initial value 116.145823
iter 10 value 91.978656
iter 20 value 82.065416
iter 30 value 81.363521
iter 40 value 81.158660
iter 50 value 80.141241
iter 60 value 79.270403
iter 70 value 78.738326
iter 80 value 77.897850
iter 90 value 77.446024
iter 100 value 77.336260
final value 77.336260
stopped after 100 iterations
Fitting Repeat 1
# weights: 507
initial value 105.728765
iter 10 value 94.109556
iter 20 value 93.816066
iter 30 value 92.253736
iter 40 value 85.276479
iter 50 value 82.648027
iter 60 value 79.002115
iter 70 value 77.576706
iter 80 value 77.212073
iter 90 value 77.064213
iter 100 value 76.983204
final value 76.983204
stopped after 100 iterations
Fitting Repeat 2
# weights: 507
initial value 113.048222
iter 10 value 93.598195
iter 20 value 84.294731
iter 30 value 81.959006
iter 40 value 81.466718
iter 50 value 80.016960
iter 60 value 77.280248
iter 70 value 76.358015
iter 80 value 76.109816
iter 90 value 75.959128
iter 100 value 75.929877
final value 75.929877
stopped after 100 iterations
Fitting Repeat 3
# weights: 507
initial value 109.613909
iter 10 value 94.091776
iter 20 value 85.988658
iter 30 value 84.490327
iter 40 value 83.272899
iter 50 value 82.135905
iter 60 value 80.337932
iter 70 value 79.467592
iter 80 value 79.413550
iter 90 value 79.159816
iter 100 value 78.396026
final value 78.396026
stopped after 100 iterations
Fitting Repeat 4
# weights: 507
initial value 113.940036
iter 10 value 93.939004
iter 20 value 92.028370
iter 30 value 85.860324
iter 40 value 81.411803
iter 50 value 81.078255
iter 60 value 79.260983
iter 70 value 78.635953
iter 80 value 78.201027
iter 90 value 78.018596
iter 100 value 77.853372
final value 77.853372
stopped after 100 iterations
Fitting Repeat 5
# weights: 507
initial value 108.639846
iter 10 value 94.122471
iter 20 value 89.052433
iter 30 value 82.962651
iter 40 value 80.813086
iter 50 value 78.803682
iter 60 value 78.468771
iter 70 value 77.739479
iter 80 value 77.529265
iter 90 value 77.272617
iter 100 value 77.200192
final value 77.200192
stopped after 100 iterations
Fitting Repeat 1
# weights: 103
initial value 101.611363
iter 10 value 93.584174
iter 20 value 93.582711
iter 30 value 93.314118
iter 40 value 93.286520
final value 93.286491
converged
Fitting Repeat 2
# weights: 103
initial value 102.548445
final value 94.054491
converged
Fitting Repeat 3
# weights: 103
initial value 99.733094
final value 94.054893
converged
Fitting Repeat 4
# weights: 103
initial value 101.316905
final value 94.054712
converged
Fitting Repeat 5
# weights: 103
initial value 100.031088
iter 10 value 93.584182
iter 20 value 93.582682
iter 30 value 93.253991
iter 40 value 90.092262
iter 50 value 90.051255
final value 90.051135
converged
Fitting Repeat 1
# weights: 305
initial value 96.550358
iter 10 value 93.352050
iter 20 value 93.306313
iter 30 value 93.261090
iter 40 value 93.161502
final value 93.160352
converged
Fitting Repeat 2
# weights: 305
initial value 102.420788
iter 10 value 94.057399
iter 20 value 93.752781
iter 30 value 81.219470
iter 40 value 80.905938
iter 50 value 80.627038
iter 60 value 80.564089
iter 70 value 80.386471
iter 80 value 79.900053
iter 90 value 79.794927
iter 100 value 78.932759
final value 78.932759
stopped after 100 iterations
Fitting Repeat 3
# weights: 305
initial value 95.705995
iter 10 value 94.057943
iter 20 value 94.053291
iter 30 value 82.604354
iter 40 value 80.585766
final value 80.584278
converged
Fitting Repeat 4
# weights: 305
initial value 99.068362
iter 10 value 94.057413
iter 20 value 93.298588
iter 30 value 84.265923
iter 40 value 84.263810
final value 84.261830
converged
Fitting Repeat 5
# weights: 305
initial value 98.600172
iter 10 value 94.057219
iter 20 value 93.455746
final value 93.342264
converged
Fitting Repeat 1
# weights: 507
initial value 99.500315
iter 10 value 93.590871
iter 20 value 93.350622
iter 30 value 93.343402
iter 40 value 93.340874
iter 50 value 93.305810
iter 60 value 92.025380
iter 70 value 90.945691
iter 80 value 90.940735
iter 90 value 90.940439
iter 100 value 90.939878
final value 90.939878
stopped after 100 iterations
Fitting Repeat 2
# weights: 507
initial value 100.793792
iter 10 value 93.884926
iter 20 value 93.881693
iter 30 value 92.733629
iter 40 value 92.504264
iter 50 value 92.502862
iter 60 value 91.439431
final value 90.946631
converged
Fitting Repeat 3
# weights: 507
initial value 95.796769
iter 10 value 94.060136
iter 20 value 91.826281
iter 30 value 80.621126
iter 40 value 80.613960
iter 50 value 80.603817
iter 60 value 80.593627
iter 70 value 80.589764
iter 80 value 80.585413
iter 90 value 80.580735
iter 100 value 80.535606
final value 80.535606
stopped after 100 iterations
Fitting Repeat 4
# weights: 507
initial value 99.234392
iter 10 value 91.739119
iter 20 value 83.854151
iter 30 value 83.836909
iter 40 value 83.088311
iter 50 value 83.087414
iter 60 value 83.076405
iter 70 value 82.989784
iter 80 value 82.989292
iter 90 value 82.988469
iter 100 value 82.943303
final value 82.943303
stopped after 100 iterations
Fitting Repeat 5
# weights: 507
initial value 107.869429
iter 10 value 93.560330
iter 20 value 93.554013
final value 93.552937
converged
Fitting Repeat 1
# weights: 103
initial value 97.286139
final value 94.484211
converged
Fitting Repeat 2
# weights: 103
initial value 99.823052
final value 94.484211
converged
Fitting Repeat 3
# weights: 103
initial value 97.066457
final value 94.484211
converged
Fitting Repeat 4
# weights: 103
initial value 98.014046
final value 94.484211
converged
Fitting Repeat 5
# weights: 103
initial value 98.876422
final value 94.484211
converged
Fitting Repeat 1
# weights: 305
initial value 96.978411
final value 94.428839
converged
Fitting Repeat 2
# weights: 305
initial value 100.242430
final value 94.484211
converged
Fitting Repeat 3
# weights: 305
initial value 106.617680
final value 94.466823
converged
Fitting Repeat 4
# weights: 305
initial value 96.476342
final value 94.466823
converged
Fitting Repeat 5
# weights: 305
initial value 137.828235
final value 94.466823
converged
Fitting Repeat 1
# weights: 507
initial value 103.638360
iter 10 value 94.391656
iter 20 value 85.275964
final value 85.275868
converged
Fitting Repeat 2
# weights: 507
initial value 103.457129
final value 94.466823
converged
Fitting Repeat 3
# weights: 507
initial value 96.154510
final value 94.484211
converged
Fitting Repeat 4
# weights: 507
initial value 118.266028
final value 94.484211
converged
Fitting Repeat 5
# weights: 507
initial value 96.160051
iter 10 value 94.106294
iter 20 value 86.736774
iter 30 value 86.734345
final value 86.733937
converged
Fitting Repeat 1
# weights: 103
initial value 101.752756
iter 10 value 94.480581
iter 20 value 93.293420
iter 30 value 91.557615
iter 40 value 91.496478
iter 50 value 91.428570
iter 60 value 86.741137
iter 70 value 86.135397
iter 80 value 85.468048
iter 90 value 84.928203
iter 100 value 84.820958
final value 84.820958
stopped after 100 iterations
Fitting Repeat 2
# weights: 103
initial value 108.996860
iter 10 value 94.364731
iter 20 value 92.035994
iter 30 value 88.868735
iter 40 value 86.782262
iter 50 value 86.516633
iter 60 value 84.854114
iter 70 value 84.790858
final value 84.784275
converged
Fitting Repeat 3
# weights: 103
initial value 101.166421
iter 10 value 94.484989
iter 20 value 93.758807
iter 30 value 90.591878
iter 40 value 89.903700
iter 50 value 87.007299
iter 60 value 86.107760
iter 70 value 85.629597
iter 80 value 84.787453
iter 90 value 84.613834
iter 100 value 84.590472
final value 84.590472
stopped after 100 iterations
Fitting Repeat 4
# weights: 103
initial value 101.244084
iter 10 value 94.488257
iter 20 value 94.331440
iter 30 value 87.036844
iter 40 value 85.933687
iter 50 value 85.854754
iter 60 value 85.249429
iter 70 value 85.106025
iter 80 value 84.830073
iter 90 value 84.794233
iter 100 value 84.784916
final value 84.784916
stopped after 100 iterations
Fitting Repeat 5
# weights: 103
initial value 97.872302
iter 10 value 93.305165
iter 20 value 86.059223
iter 30 value 85.826740
iter 40 value 85.302467
iter 50 value 85.128249
iter 60 value 84.943105
iter 70 value 84.834772
iter 80 value 84.785287
final value 84.784275
converged
Fitting Repeat 1
# weights: 305
initial value 103.111939
iter 10 value 94.487437
iter 20 value 92.630961
iter 30 value 90.090805
iter 40 value 89.788383
iter 50 value 87.935987
iter 60 value 86.462053
iter 70 value 83.455414
iter 80 value 81.532289
iter 90 value 81.227025
iter 100 value 80.856805
final value 80.856805
stopped after 100 iterations
Fitting Repeat 2
# weights: 305
initial value 102.372010
iter 10 value 94.513874
iter 20 value 94.400965
iter 30 value 89.550889
iter 40 value 87.467233
iter 50 value 86.725990
iter 60 value 86.301303
iter 70 value 85.856742
iter 80 value 83.490221
iter 90 value 82.603601
iter 100 value 82.362381
final value 82.362381
stopped after 100 iterations
Fitting Repeat 3
# weights: 305
initial value 108.279427
iter 10 value 94.498107
iter 20 value 94.329902
iter 30 value 93.983859
iter 40 value 86.945427
iter 50 value 85.241194
iter 60 value 84.648418
iter 70 value 84.321913
iter 80 value 84.057949
iter 90 value 83.936174
iter 100 value 83.869376
final value 83.869376
stopped after 100 iterations
Fitting Repeat 4
# weights: 305
initial value 103.555656
iter 10 value 93.305862
iter 20 value 88.042374
iter 30 value 85.792300
iter 40 value 84.833178
iter 50 value 84.067019
iter 60 value 82.609703
iter 70 value 82.299457
iter 80 value 82.126455
iter 90 value 81.968481
iter 100 value 81.687658
final value 81.687658
stopped after 100 iterations
Fitting Repeat 5
# weights: 305
initial value 105.225355
iter 10 value 95.083697
iter 20 value 94.493593
iter 30 value 85.286560
iter 40 value 82.252256
iter 50 value 81.645931
iter 60 value 81.473128
iter 70 value 81.332588
iter 80 value 81.098224
iter 90 value 80.993508
iter 100 value 80.899958
final value 80.899958
stopped after 100 iterations
Fitting Repeat 1
# weights: 507
initial value 126.892791
iter 10 value 95.000688
iter 20 value 94.326338
iter 30 value 94.225148
iter 40 value 91.468811
iter 50 value 91.386646
iter 60 value 89.750889
iter 70 value 84.704527
iter 80 value 82.224331
iter 90 value 80.995853
iter 100 value 80.816389
final value 80.816389
stopped after 100 iterations
Fitting Repeat 2
# weights: 507
initial value 113.443472
iter 10 value 93.979027
iter 20 value 87.740397
iter 30 value 83.301244
iter 40 value 82.854408
iter 50 value 81.959411
iter 60 value 81.491449
iter 70 value 81.424473
iter 80 value 81.188259
iter 90 value 80.916643
iter 100 value 80.820458
final value 80.820458
stopped after 100 iterations
Fitting Repeat 3
# weights: 507
initial value 104.281081
iter 10 value 94.571820
iter 20 value 94.471731
iter 30 value 92.408751
iter 40 value 87.177976
iter 50 value 84.528326
iter 60 value 84.264892
iter 70 value 84.120094
iter 80 value 83.444948
iter 90 value 82.167958
iter 100 value 81.712313
final value 81.712313
stopped after 100 iterations
Fitting Repeat 4
# weights: 507
initial value 106.025838
iter 10 value 94.771254
iter 20 value 86.167773
iter 30 value 84.835049
iter 40 value 84.780009
iter 50 value 84.300955
iter 60 value 84.148673
iter 70 value 84.022121
iter 80 value 83.919334
iter 90 value 83.899101
iter 100 value 83.640777
final value 83.640777
stopped after 100 iterations
Fitting Repeat 5
# weights: 507
initial value 105.703716
iter 10 value 95.482327
iter 20 value 89.682707
iter 30 value 85.799343
iter 40 value 84.481450
iter 50 value 82.702454
iter 60 value 81.935160
iter 70 value 81.379256
iter 80 value 80.848620
iter 90 value 80.627681
iter 100 value 80.569160
final value 80.569160
stopped after 100 iterations
Fitting Repeat 1
# weights: 103
initial value 98.800094
final value 94.485662
converged
Fitting Repeat 2
# weights: 103
initial value 96.433426
final value 94.486171
converged
Fitting Repeat 3
# weights: 103
initial value 96.611531
iter 10 value 94.485800
iter 20 value 94.484211
iter 30 value 88.757663
iter 40 value 85.511359
iter 50 value 85.509285
iter 60 value 85.096552
iter 70 value 85.077416
final value 85.077401
converged
Fitting Repeat 4
# weights: 103
initial value 95.251233
final value 94.485918
converged
Fitting Repeat 5
# weights: 103
initial value 103.244234
final value 94.313599
converged
Fitting Repeat 1
# weights: 305
initial value 97.383487
iter 10 value 88.762465
iter 20 value 86.328984
iter 30 value 84.522986
iter 40 value 84.521938
final value 84.521839
converged
Fitting Repeat 2
# weights: 305
initial value 103.246963
iter 10 value 94.435857
iter 20 value 94.418586
iter 30 value 86.668734
iter 40 value 85.293983
iter 50 value 85.289904
iter 60 value 81.848331
iter 70 value 81.097691
iter 80 value 80.910918
iter 90 value 80.815927
iter 100 value 80.808696
final value 80.808696
stopped after 100 iterations
Fitting Repeat 3
# weights: 305
initial value 96.298928
iter 10 value 94.386951
iter 20 value 94.148953
iter 30 value 94.133502
iter 40 value 94.129339
iter 50 value 94.128928
iter 60 value 93.339027
iter 70 value 93.089402
final value 93.089396
converged
Fitting Repeat 4
# weights: 305
initial value 102.064006
iter 10 value 94.489087
iter 20 value 94.484224
final value 94.484214
converged
Fitting Repeat 5
# weights: 305
initial value 101.904509
iter 10 value 94.489131
iter 20 value 94.482786
iter 30 value 84.780112
iter 40 value 84.304174
iter 50 value 84.225089
iter 60 value 84.219834
iter 70 value 82.972585
iter 80 value 82.906696
iter 90 value 82.869954
final value 82.869746
converged
Fitting Repeat 1
# weights: 507
initial value 112.053891
iter 10 value 92.496106
iter 20 value 86.283508
iter 30 value 86.280186
iter 40 value 84.928880
iter 50 value 84.662927
iter 60 value 84.652223
final value 84.652134
converged
Fitting Repeat 2
# weights: 507
initial value 114.766375
iter 10 value 94.261350
iter 20 value 94.255339
iter 30 value 94.185843
iter 40 value 94.183803
iter 50 value 94.163277
iter 60 value 91.220414
iter 70 value 90.737341
iter 80 value 85.427925
iter 90 value 85.319948
iter 100 value 84.412231
final value 84.412231
stopped after 100 iterations
Fitting Repeat 3
# weights: 507
initial value 100.333580
iter 10 value 94.491772
iter 20 value 90.014932
iter 30 value 85.776962
iter 40 value 85.258282
iter 50 value 85.173970
iter 60 value 85.142713
iter 70 value 85.142262
iter 80 value 83.876071
iter 90 value 83.599850
iter 100 value 83.588840
final value 83.588840
stopped after 100 iterations
Fitting Repeat 4
# weights: 507
initial value 100.020523
iter 10 value 94.492744
iter 20 value 94.358803
iter 30 value 88.582219
iter 40 value 88.565115
iter 50 value 87.563536
iter 60 value 86.311877
iter 70 value 84.638402
iter 80 value 83.594226
iter 90 value 82.182923
iter 100 value 81.826563
final value 81.826563
stopped after 100 iterations
Fitting Repeat 5
# weights: 507
initial value 106.264144
iter 10 value 94.492084
iter 20 value 94.268746
iter 30 value 87.144227
iter 40 value 86.439149
iter 50 value 86.329083
iter 60 value 86.167069
iter 70 value 86.164284
iter 80 value 86.032780
iter 90 value 83.146694
iter 100 value 81.633441
final value 81.633441
stopped after 100 iterations
Fitting Repeat 1
# weights: 103
initial value 100.477637
final value 94.052910
converged
Fitting Repeat 2
# weights: 103
initial value 95.608325
final value 94.052910
converged
Fitting Repeat 3
# weights: 103
initial value 94.964685
final value 94.052910
converged
Fitting Repeat 4
# weights: 103
initial value 98.341419
final value 94.003143
converged
Fitting Repeat 5
# weights: 103
initial value 113.363818
final value 94.052910
converged
Fitting Repeat 1
# weights: 305
initial value 104.175761
final value 94.052910
converged
Fitting Repeat 2
# weights: 305
initial value 111.480178
final value 93.836066
converged
Fitting Repeat 3
# weights: 305
initial value 96.323783
final value 94.052910
converged
Fitting Repeat 4
# weights: 305
initial value 94.248789
final value 94.052910
converged
Fitting Repeat 5
# weights: 305
initial value 97.426778
final value 94.052910
converged
Fitting Repeat 1
# weights: 507
initial value 102.654407
final value 93.836066
converged
Fitting Repeat 2
# weights: 507
initial value 105.116214
final value 93.371808
converged
Fitting Repeat 3
# weights: 507
initial value 128.587747
iter 10 value 93.834086
iter 20 value 93.478370
final value 93.283335
converged
Fitting Repeat 4
# weights: 507
initial value 99.207145
final value 93.836066
converged
Fitting Repeat 5
# weights: 507
initial value 116.400148
final value 93.969040
converged
Fitting Repeat 1
# weights: 103
initial value 100.177490
iter 10 value 94.120742
iter 20 value 94.056019
iter 30 value 93.909882
iter 40 value 93.890421
iter 50 value 93.889541
iter 60 value 92.289597
iter 70 value 86.735487
iter 80 value 86.280416
iter 90 value 86.254046
iter 100 value 86.247965
final value 86.247965
stopped after 100 iterations
Fitting Repeat 2
# weights: 103
initial value 98.105518
iter 10 value 93.534919
iter 20 value 91.348891
iter 30 value 88.272203
iter 40 value 87.387209
iter 50 value 85.580856
iter 60 value 85.518256
iter 70 value 85.287140
iter 80 value 84.800266
iter 90 value 84.635049
iter 100 value 84.432641
final value 84.432641
stopped after 100 iterations
Fitting Repeat 3
# weights: 103
initial value 97.229767
iter 10 value 94.060261
iter 20 value 93.478688
iter 30 value 88.219761
iter 40 value 86.349372
iter 50 value 85.805312
iter 60 value 85.680297
iter 70 value 85.578336
iter 80 value 85.527101
iter 90 value 85.479590
iter 100 value 84.967598
final value 84.967598
stopped after 100 iterations
Fitting Repeat 4
# weights: 103
initial value 98.870205
iter 10 value 94.056179
iter 20 value 93.281239
iter 30 value 87.946226
iter 40 value 86.561770
iter 50 value 86.315603
iter 60 value 86.160123
iter 70 value 85.908046
iter 80 value 85.855791
iter 90 value 85.174834
iter 100 value 85.058203
final value 85.058203
stopped after 100 iterations
Fitting Repeat 5
# weights: 103
initial value 101.338543
iter 10 value 93.153421
iter 20 value 87.923897
iter 30 value 87.749644
iter 40 value 87.604992
iter 50 value 87.125906
iter 60 value 85.942142
iter 70 value 85.139366
iter 80 value 84.818711
iter 90 value 84.586630
iter 100 value 84.435131
final value 84.435131
stopped after 100 iterations
Fitting Repeat 1
# weights: 305
initial value 98.254377
iter 10 value 88.170368
iter 20 value 86.709482
iter 30 value 86.302722
iter 40 value 85.486695
iter 50 value 84.201984
iter 60 value 83.612464
iter 70 value 83.447577
iter 80 value 83.392869
iter 90 value 83.299970
iter 100 value 83.245719
final value 83.245719
stopped after 100 iterations
Fitting Repeat 2
# weights: 305
initial value 102.877074
iter 10 value 94.756598
iter 20 value 93.839405
iter 30 value 93.169807
iter 40 value 89.775895
iter 50 value 86.861412
iter 60 value 85.143022
iter 70 value 84.577187
iter 80 value 83.970496
iter 90 value 83.897455
iter 100 value 83.589878
final value 83.589878
stopped after 100 iterations
Fitting Repeat 3
# weights: 305
initial value 108.552065
iter 10 value 93.424092
iter 20 value 87.122490
iter 30 value 86.762149
iter 40 value 86.414428
iter 50 value 85.387937
iter 60 value 85.105333
iter 70 value 85.048302
iter 80 value 84.793913
iter 90 value 84.472047
iter 100 value 83.833525
final value 83.833525
stopped after 100 iterations
Fitting Repeat 4
# weights: 305
initial value 105.316058
iter 10 value 94.195994
iter 20 value 94.000064
iter 30 value 88.777067
iter 40 value 88.222834
iter 50 value 86.206738
iter 60 value 85.050959
iter 70 value 84.127140
iter 80 value 83.925157
iter 90 value 83.473215
iter 100 value 83.453411
final value 83.453411
stopped after 100 iterations
Fitting Repeat 5
# weights: 305
initial value 103.786342
iter 10 value 94.207554
iter 20 value 94.084854
iter 30 value 93.996792
iter 40 value 93.604266
iter 50 value 90.490969
iter 60 value 90.047326
iter 70 value 88.394263
iter 80 value 87.417826
iter 90 value 85.807946
iter 100 value 84.896657
final value 84.896657
stopped after 100 iterations
Fitting Repeat 1
# weights: 507
initial value 105.122708
iter 10 value 93.631764
iter 20 value 92.306720
iter 30 value 87.960333
iter 40 value 87.729031
iter 50 value 87.295725
iter 60 value 86.239547
iter 70 value 85.629205
iter 80 value 85.203335
iter 90 value 84.694204
iter 100 value 84.415933
final value 84.415933
stopped after 100 iterations
Fitting Repeat 2
# weights: 507
initial value 154.295790
iter 10 value 94.236826
iter 20 value 93.901576
iter 30 value 89.742757
iter 40 value 87.322159
iter 50 value 86.028769
iter 60 value 85.580794
iter 70 value 84.679091
iter 80 value 83.791536
iter 90 value 83.415315
iter 100 value 83.317261
final value 83.317261
stopped after 100 iterations
Fitting Repeat 3
# weights: 507
initial value 108.213018
iter 10 value 94.615276
iter 20 value 92.712889
iter 30 value 86.727152
iter 40 value 86.075803
iter 50 value 85.014172
iter 60 value 84.536244
iter 70 value 84.367787
iter 80 value 84.234560
iter 90 value 83.946419
iter 100 value 83.674304
final value 83.674304
stopped after 100 iterations
Fitting Repeat 4
# weights: 507
initial value 107.702356
iter 10 value 97.918758
iter 20 value 92.321540
iter 30 value 88.177175
iter 40 value 87.085456
iter 50 value 85.475874
iter 60 value 85.325281
iter 70 value 84.927561
iter 80 value 84.891230
iter 90 value 84.479940
iter 100 value 84.195888
final value 84.195888
stopped after 100 iterations
Fitting Repeat 5
# weights: 507
initial value 136.356015
iter 10 value 94.065611
iter 20 value 92.613612
iter 30 value 92.235954
iter 40 value 90.144452
iter 50 value 88.766962
iter 60 value 87.394357
iter 70 value 85.156966
iter 80 value 84.326154
iter 90 value 83.902914
iter 100 value 83.707987
final value 83.707987
stopped after 100 iterations
Fitting Repeat 1
# weights: 103
initial value 96.209490
iter 10 value 93.838035
iter 20 value 93.836871
iter 30 value 93.836264
final value 93.836255
converged
Fitting Repeat 2
# weights: 103
initial value 95.783817
final value 94.054527
converged
Fitting Repeat 3
# weights: 103
initial value 99.104299
final value 94.054631
converged
Fitting Repeat 4
# weights: 103
initial value 109.784540
final value 94.054712
converged
Fitting Repeat 5
# weights: 103
initial value 96.356745
final value 94.054316
converged
Fitting Repeat 1
# weights: 305
initial value 107.008621
iter 10 value 94.057957
iter 20 value 94.053078
iter 30 value 92.154331
iter 40 value 88.933328
iter 50 value 87.640608
iter 60 value 87.585770
iter 70 value 87.574481
iter 80 value 87.554763
iter 90 value 85.675922
iter 100 value 85.570074
final value 85.570074
stopped after 100 iterations
Fitting Repeat 2
# weights: 305
initial value 104.473106
iter 10 value 94.057573
iter 20 value 94.052927
final value 94.052921
converged
Fitting Repeat 3
# weights: 305
initial value 106.558709
iter 10 value 94.057727
iter 20 value 92.928055
iter 30 value 87.414976
iter 40 value 87.410960
final value 87.410898
converged
Fitting Repeat 4
# weights: 305
initial value 96.406801
iter 10 value 93.973920
iter 20 value 93.879166
iter 30 value 93.834399
final value 93.834382
converged
Fitting Repeat 5
# weights: 305
initial value 98.794968
iter 10 value 94.057904
iter 20 value 93.223579
iter 30 value 89.033153
iter 40 value 86.481381
iter 50 value 85.493433
iter 60 value 85.432470
iter 70 value 85.408242
iter 80 value 85.407811
iter 90 value 85.406539
iter 100 value 85.248152
final value 85.248152
stopped after 100 iterations
Fitting Repeat 1
# weights: 507
initial value 104.039897
iter 10 value 93.667471
iter 20 value 92.708936
iter 30 value 92.680753
iter 40 value 91.917821
iter 50 value 91.904223
iter 60 value 87.054284
iter 70 value 84.673205
iter 80 value 84.672901
iter 90 value 84.660456
iter 100 value 84.404943
final value 84.404943
stopped after 100 iterations
Fitting Repeat 2
# weights: 507
initial value 95.048348
iter 10 value 93.844099
iter 20 value 93.835957
iter 30 value 93.474433
iter 40 value 93.463145
iter 50 value 93.461992
iter 60 value 93.429608
iter 70 value 93.428348
iter 80 value 93.427868
final value 93.427842
converged
Fitting Repeat 3
# weights: 507
initial value 124.563668
iter 10 value 93.845482
iter 20 value 93.650808
iter 30 value 87.650013
iter 40 value 86.751933
iter 50 value 83.689361
iter 60 value 83.219466
iter 70 value 82.390318
iter 80 value 82.284922
iter 90 value 82.064786
iter 100 value 81.804309
final value 81.804309
stopped after 100 iterations
Fitting Repeat 4
# weights: 507
initial value 94.764424
iter 10 value 93.844387
iter 20 value 93.836545
iter 30 value 93.836176
iter 40 value 93.700367
iter 50 value 87.478529
iter 60 value 87.214702
iter 70 value 83.925712
iter 80 value 82.968262
iter 90 value 82.558223
iter 100 value 82.535278
final value 82.535278
stopped after 100 iterations
Fitting Repeat 5
# weights: 507
initial value 99.647726
iter 10 value 93.211628
iter 20 value 93.195569
iter 30 value 90.846435
iter 40 value 87.475069
final value 87.474415
converged
Fitting Repeat 1
# weights: 103
initial value 103.710757
final value 94.484211
converged
Fitting Repeat 2
# weights: 103
initial value 95.748778
final value 94.484211
converged
Fitting Repeat 3
# weights: 103
initial value 96.345465
final value 94.484211
converged
Fitting Repeat 4
# weights: 103
initial value 101.785022
final value 94.484211
converged
Fitting Repeat 5
# weights: 103
initial value 100.714642
final value 94.484211
converged
Fitting Repeat 1
# weights: 305
initial value 98.469060
final value 94.275362
converged
Fitting Repeat 2
# weights: 305
initial value 111.070706
iter 10 value 94.365463
iter 10 value 94.365462
iter 10 value 94.365462
final value 94.365462
converged
Fitting Repeat 3
# weights: 305
initial value 95.984313
iter 10 value 94.442936
final value 94.442934
converged
Fitting Repeat 4
# weights: 305
initial value 110.922006
final value 94.484211
converged
Fitting Repeat 5
# weights: 305
initial value 113.004928
final value 94.484211
converged
Fitting Repeat 1
# weights: 507
initial value 96.661487
iter 10 value 93.946399
final value 93.920042
converged
Fitting Repeat 2
# weights: 507
initial value 99.722356
final value 94.484211
converged
Fitting Repeat 3
# weights: 507
initial value 113.638667
final value 94.484211
converged
Fitting Repeat 4
# weights: 507
initial value 111.245255
final value 94.484211
converged
Fitting Repeat 5
# weights: 507
initial value 96.025732
final value 94.484211
converged
Fitting Repeat 1
# weights: 103
initial value 104.458669
iter 10 value 94.327788
iter 20 value 88.114932
iter 30 value 87.137984
iter 40 value 84.739658
iter 50 value 84.536579
iter 60 value 84.424727
iter 70 value 84.410079
final value 84.409375
converged
Fitting Repeat 2
# weights: 103
initial value 102.374684
iter 10 value 94.505168
iter 20 value 86.542843
iter 30 value 84.203492
iter 40 value 83.668013
iter 50 value 83.274079
iter 60 value 82.815209
iter 70 value 82.305698
iter 80 value 82.222014
iter 90 value 82.088469
final value 82.088227
converged
Fitting Repeat 3
# weights: 103
initial value 97.125857
iter 10 value 93.598900
iter 20 value 86.415985
iter 30 value 85.839715
iter 40 value 85.317978
iter 50 value 85.057731
iter 60 value 84.744103
final value 84.740626
converged
Fitting Repeat 4
# weights: 103
initial value 96.968731
iter 10 value 94.490608
iter 20 value 94.488689
iter 30 value 87.798927
iter 40 value 85.880022
iter 50 value 85.476270
iter 60 value 85.085452
iter 70 value 84.755797
final value 84.751834
converged
Fitting Repeat 5
# weights: 103
initial value 101.260534
iter 10 value 94.407952
iter 20 value 91.666371
iter 30 value 85.033871
iter 40 value 84.617971
iter 50 value 84.435572
iter 60 value 84.243314
iter 70 value 83.977026
iter 80 value 83.929257
iter 90 value 83.861889
final value 83.860904
converged
Fitting Repeat 1
# weights: 305
initial value 100.847499
iter 10 value 94.503378
iter 20 value 92.641059
iter 30 value 89.240108
iter 40 value 83.730877
iter 50 value 82.671067
iter 60 value 81.761322
iter 70 value 81.306384
iter 80 value 81.087788
iter 90 value 81.074600
iter 100 value 81.070695
final value 81.070695
stopped after 100 iterations
Fitting Repeat 2
# weights: 305
initial value 106.505600
iter 10 value 94.486372
iter 20 value 90.059704
iter 30 value 85.997047
iter 40 value 85.466463
iter 50 value 85.196972
iter 60 value 84.429923
iter 70 value 83.133386
iter 80 value 82.619918
iter 90 value 82.091102
iter 100 value 81.708988
final value 81.708988
stopped after 100 iterations
Fitting Repeat 3
# weights: 305
initial value 117.022436
iter 10 value 93.699702
iter 20 value 87.761950
iter 30 value 85.159992
iter 40 value 83.840417
iter 50 value 82.219378
iter 60 value 81.900187
iter 70 value 81.751478
iter 80 value 81.542177
iter 90 value 81.468581
iter 100 value 81.219394
final value 81.219394
stopped after 100 iterations
Fitting Repeat 4
# weights: 305
initial value 109.738448
iter 10 value 94.460495
iter 20 value 93.588791
iter 30 value 89.504496
iter 40 value 87.879080
iter 50 value 85.641970
iter 60 value 84.492102
iter 70 value 83.952193
iter 80 value 83.827170
iter 90 value 82.636432
iter 100 value 81.321406
final value 81.321406
stopped after 100 iterations
Fitting Repeat 5
# weights: 305
initial value 107.371927
iter 10 value 94.480991
iter 20 value 87.155915
iter 30 value 85.183937
iter 40 value 83.579940
iter 50 value 82.231657
iter 60 value 81.102139
iter 70 value 80.924360
iter 80 value 80.702612
iter 90 value 80.608533
iter 100 value 80.595724
final value 80.595724
stopped after 100 iterations
Fitting Repeat 1
# weights: 507
initial value 108.782609
iter 10 value 94.523208
iter 20 value 88.834028
iter 30 value 87.679073
iter 40 value 87.093877
iter 50 value 85.854582
iter 60 value 82.966548
iter 70 value 82.186161
iter 80 value 82.060856
iter 90 value 82.006873
iter 100 value 81.986993
final value 81.986993
stopped after 100 iterations
Fitting Repeat 2
# weights: 507
initial value 103.647061
iter 10 value 95.844916
iter 20 value 88.437924
iter 30 value 85.859093
iter 40 value 84.559919
iter 50 value 83.165309
iter 60 value 82.619272
iter 70 value 82.244878
iter 80 value 81.911399
iter 90 value 81.155860
iter 100 value 80.698820
final value 80.698820
stopped after 100 iterations
Fitting Repeat 3
# weights: 507
initial value 99.447751
iter 10 value 94.034524
iter 20 value 89.388753
iter 30 value 84.203143
iter 40 value 82.946828
iter 50 value 82.411655
iter 60 value 82.155284
iter 70 value 81.950557
iter 80 value 81.640063
iter 90 value 81.406568
iter 100 value 81.370244
final value 81.370244
stopped after 100 iterations
Fitting Repeat 4
# weights: 507
initial value 102.657247
iter 10 value 94.428519
iter 20 value 90.458806
iter 30 value 89.769042
iter 40 value 88.019837
iter 50 value 85.390313
iter 60 value 82.153091
iter 70 value 81.502993
iter 80 value 81.386168
iter 90 value 81.163437
iter 100 value 81.081494
final value 81.081494
stopped after 100 iterations
Fitting Repeat 5
# weights: 507
initial value 114.075302
iter 10 value 91.236670
iter 20 value 85.487276
iter 30 value 84.528163
iter 40 value 83.504248
iter 50 value 82.000880
iter 60 value 81.787199
iter 70 value 81.474497
iter 80 value 80.966322
iter 90 value 80.742984
iter 100 value 80.641425
final value 80.641425
stopped after 100 iterations
Fitting Repeat 1
# weights: 103
initial value 97.669369
final value 94.486087
converged
Fitting Repeat 2
# weights: 103
initial value 98.069727
final value 94.486261
converged
Fitting Repeat 3
# weights: 103
initial value 97.352737
iter 10 value 94.486003
iter 20 value 94.482989
iter 30 value 92.086840
iter 40 value 90.093471
iter 50 value 85.761255
iter 60 value 85.732417
iter 70 value 85.714635
iter 80 value 85.711724
iter 90 value 85.707460
iter 100 value 85.539799
final value 85.539799
stopped after 100 iterations
Fitting Repeat 4
# weights: 103
initial value 107.163885
final value 94.485640
converged
Fitting Repeat 5
# weights: 103
initial value 94.688558
final value 94.485924
converged
Fitting Repeat 1
# weights: 305
initial value 100.839469
iter 10 value 94.489130
iter 20 value 94.484329
iter 30 value 90.348254
iter 40 value 89.146239
iter 50 value 88.871824
iter 60 value 88.056825
iter 60 value 88.056825
iter 60 value 88.056825
final value 88.056825
converged
Fitting Repeat 2
# weights: 305
initial value 113.422375
iter 10 value 94.448406
iter 20 value 94.440031
iter 30 value 89.928512
iter 40 value 84.133698
iter 50 value 84.115266
iter 60 value 83.943375
iter 70 value 83.929337
iter 80 value 83.929049
iter 90 value 83.927823
final value 83.927710
converged
Fitting Repeat 3
# weights: 305
initial value 111.736619
iter 10 value 94.489100
iter 20 value 94.484485
iter 30 value 94.320285
iter 40 value 89.440083
iter 50 value 84.334596
iter 60 value 83.890315
final value 83.890255
converged
Fitting Repeat 4
# weights: 305
initial value 100.716227
iter 10 value 94.488881
iter 20 value 94.483887
iter 30 value 90.378508
iter 40 value 89.637501
iter 50 value 89.162129
iter 60 value 89.115460
iter 70 value 89.115129
final value 89.114985
converged
Fitting Repeat 5
# weights: 305
initial value 104.563867
iter 10 value 94.489118
iter 20 value 94.484273
iter 30 value 91.441502
iter 40 value 85.223131
iter 50 value 85.164932
final value 85.164828
converged
Fitting Repeat 1
# weights: 507
initial value 100.126814
iter 10 value 94.492489
iter 20 value 94.436859
iter 30 value 86.795318
iter 40 value 84.793555
iter 50 value 84.424186
iter 60 value 84.423588
final value 84.423583
converged
Fitting Repeat 2
# weights: 507
initial value 99.712986
iter 10 value 94.492891
iter 20 value 93.113656
iter 30 value 84.257676
iter 40 value 83.057270
iter 50 value 82.592920
iter 60 value 82.429682
iter 70 value 82.263171
iter 80 value 82.021045
final value 82.021044
converged
Fitting Repeat 3
# weights: 507
initial value 97.869486
iter 10 value 94.492229
final value 94.486906
converged
Fitting Repeat 4
# weights: 507
initial value 116.115755
iter 10 value 93.443276
iter 20 value 87.315920
iter 30 value 86.667919
iter 40 value 85.423253
iter 50 value 85.414185
iter 60 value 84.144799
iter 70 value 83.862361
iter 80 value 83.842480
iter 90 value 83.830324
iter 100 value 83.826115
final value 83.826115
stopped after 100 iterations
Fitting Repeat 5
# weights: 507
initial value 102.233956
iter 10 value 94.236298
iter 20 value 94.230934
iter 30 value 86.810422
iter 40 value 84.068608
iter 50 value 83.870246
iter 60 value 83.553574
iter 70 value 83.273789
final value 83.271923
converged
Fitting Repeat 1
# weights: 507
initial value 134.654595
iter 10 value 116.789344
iter 20 value 110.585471
iter 30 value 108.029894
iter 40 value 105.829778
iter 50 value 105.535548
iter 60 value 105.342921
iter 70 value 102.994635
iter 80 value 101.625406
iter 90 value 101.473829
iter 100 value 101.421998
final value 101.421998
stopped after 100 iterations
Fitting Repeat 2
# weights: 507
initial value 128.289381
iter 10 value 114.854518
iter 20 value 112.987174
iter 30 value 110.365410
iter 40 value 104.245573
iter 50 value 103.095479
iter 60 value 102.417773
iter 70 value 101.548500
iter 80 value 101.294309
iter 90 value 100.905000
iter 100 value 100.805554
final value 100.805554
stopped after 100 iterations
Fitting Repeat 3
# weights: 507
initial value 149.805368
iter 10 value 117.629466
iter 20 value 115.894166
iter 30 value 108.849816
iter 40 value 105.215968
iter 50 value 103.923370
iter 60 value 102.714397
iter 70 value 101.727458
iter 80 value 101.469531
iter 90 value 101.406536
iter 100 value 101.212037
final value 101.212037
stopped after 100 iterations
Fitting Repeat 4
# weights: 507
initial value 132.454163
iter 10 value 121.804719
iter 20 value 113.108372
iter 30 value 108.457949
iter 40 value 106.783855
iter 50 value 106.003898
iter 60 value 103.963567
iter 70 value 103.417440
iter 80 value 103.296593
iter 90 value 102.640632
iter 100 value 102.341520
final value 102.341520
stopped after 100 iterations
Fitting Repeat 5
# weights: 507
initial value 131.088410
iter 10 value 109.795592
iter 20 value 106.431934
iter 30 value 105.877796
iter 40 value 103.996119
iter 50 value 102.188582
iter 60 value 101.568294
iter 70 value 101.392701
iter 80 value 101.174310
iter 90 value 100.678370
iter 100 value 100.545867
final value 100.545867
stopped after 100 iterations
svmRadial
ranger
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls < cases
Setting levels: control = Positive, case = Negative
Setting direction: controls < cases
Setting levels: control = Positive, case = Negative
Setting direction: controls < cases
Setting levels: control = Positive, case = Negative
Setting direction: controls < cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls < cases
Setting levels: control = Positive, case = Negative
Setting direction: controls < cases
Setting levels: control = Positive, case = Negative
Setting direction: controls < cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
RUNIT TEST PROTOCOL -- Fri Apr 10 20:40:41 2026
***********************************************
Number of test functions: 7
Number of errors: 0
Number of failures: 0
1 Test Suite :
HPiP RUnit Tests - 7 test functions, 0 errors, 0 failures
Number of test functions: 7
Number of errors: 0
Number of failures: 0
Warning messages:
1: `repeats` has no meaning for this resampling method.
2: executing %dopar% sequentially: no parallel backend registered
>
>
>
>
> proc.time()
user system elapsed
21.708 0.808 85.236
HPiP.Rcheck/HPiP-Ex.timings
| name | user | system | elapsed | |
| FSmethod | 16.652 | 0.098 | 17.052 | |
| FreqInteractors | 0.168 | 0.009 | 0.180 | |
| calculateAAC | 0.013 | 0.001 | 0.015 | |
| calculateAutocor | 0.123 | 0.007 | 0.131 | |
| calculateCTDC | 0.029 | 0.001 | 0.030 | |
| calculateCTDD | 0.161 | 0.013 | 0.176 | |
| calculateCTDT | 0.057 | 0.002 | 0.059 | |
| calculateCTriad | 0.152 | 0.007 | 0.159 | |
| calculateDC | 0.031 | 0.003 | 0.033 | |
| calculateF | 0.099 | 0.001 | 0.101 | |
| calculateKSAAP | 0.038 | 0.003 | 0.042 | |
| calculateQD_Sm | 0.673 | 0.026 | 0.700 | |
| calculateTC | 0.563 | 0.049 | 0.615 | |
| calculateTC_Sm | 0.104 | 0.010 | 0.115 | |
| corr_plot | 17.157 | 0.115 | 17.344 | |
| enrichfindP | 0.203 | 0.045 | 15.299 | |
| enrichfind_hp | 0.016 | 0.003 | 1.013 | |
| enrichplot | 0.187 | 0.005 | 0.196 | |
| filter_missing_values | 0.001 | 0.000 | 0.000 | |
| getFASTA | 0.039 | 0.011 | 3.931 | |
| getHPI | 0.001 | 0.001 | 0.000 | |
| get_negativePPI | 0 | 0 | 0 | |
| get_positivePPI | 0 | 0 | 0 | |
| impute_missing_data | 0 | 0 | 0 | |
| plotPPI | 0.030 | 0.001 | 0.030 | |
| pred_ensembel | 6.137 | 0.160 | 5.560 | |
| var_imp | 17.256 | 0.209 | 17.688 | |