| Back to Multiple platform build/check report for BioC 3.23: simplified long |
|
This page was generated on 2026-03-05 11:35 -0500 (Thu, 05 Mar 2026).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 24.04.3 LTS) | x86_64 | R Under development (unstable) (2026-01-15 r89304) -- "Unsuffered Consequences" | 4891 |
| kjohnson3 | macOS 13.7.7 Ventura | arm64 | R Under development (unstable) (2026-01-15 r89304) -- "Unsuffered Consequences" | 4583 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 1007/2357 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| HPiP 1.17.2 (landing page) Matineh Rahmatbakhsh
| nebbiolo1 | Linux (Ubuntu 24.04.3 LTS) / x86_64 | OK | OK | OK | |||||||||
| kjohnson3 | macOS 13.7.7 Ventura / arm64 | OK | OK | OK | OK | |||||||||
| See other builds for HPiP in R Universe. | ||||||||||||||
|
To the developers/maintainers of the HPiP package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/HPiP.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: HPiP |
| Version: 1.17.2 |
| Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:HPiP.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings HPiP_1.17.2.tar.gz |
| StartedAt: 2026-03-04 20:20:54 -0500 (Wed, 04 Mar 2026) |
| EndedAt: 2026-03-04 20:24:18 -0500 (Wed, 04 Mar 2026) |
| EllapsedTime: 203.8 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: HPiP.Rcheck |
| Warnings: 0 |
##############################################################################
##############################################################################
###
### Running command:
###
### /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:HPiP.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings HPiP_1.17.2.tar.gz
###
##############################################################################
##############################################################################
* using log directory ‘/Users/biocbuild/bbs-3.23-bioc/meat/HPiP.Rcheck’
* using R Under development (unstable) (2026-01-15 r89304)
* using platform: aarch64-apple-darwin20
* R was compiled by
Apple clang version 16.0.0 (clang-1600.0.26.6)
GNU Fortran (GCC) 14.2.0
* running under: macOS Sonoma 14.8.3
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘HPiP/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘HPiP’ version ‘1.17.2’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘HPiP’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... NOTE
License stub is invalid DCF.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... NOTE
checkRd: (-1) getHPI.Rd:29: Lost braces
29 | then the Kronecker product is the code{(pm × qn)} block matrix
| ^
* checking Rd metadata ... OK
* checking Rd cross-references ... INFO
Package unavailable to check Rd xrefs: ‘ftrCOOL’
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking R/sysdata.rda ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
FSmethod 19.130 0.955 20.902
corr_plot 19.023 0.924 20.673
var_imp 18.445 1.012 20.586
pred_ensembel 6.531 0.141 6.255
enrichfindP 0.205 0.043 11.471
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
Running ‘runTests.R’
OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: 2 NOTEs
See
‘/Users/biocbuild/bbs-3.23-bioc/meat/HPiP.Rcheck/00check.log’
for details.
HPiP.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL HPiP ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/4.6-arm64/Resources/library’ * installing *source* package ‘HPiP’ ... ** this is package ‘HPiP’ version ‘1.17.2’ ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (HPiP)
HPiP.Rcheck/tests/runTests.Rout
R Under development (unstable) (2026-01-15 r89304) -- "Unsuffered Consequences"
Copyright (C) 2026 The R Foundation for Statistical Computing
Platform: aarch64-apple-darwin20
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> BiocGenerics:::testPackage('HPiP')
No results to show
Please make sure that the organism is correct or set significant = FALSE
No results to show
Please make sure that the organism is correct or set significant = FALSE
No results to show
Please make sure that the organism is correct or set significant = FALSE
No results to show
Please make sure that the organism is correct or set significant = FALSE
No results to show
Please make sure that the organism is correct or set significant = FALSE
No results to show
Please make sure that the organism is correct or set significant = FALSE
No results to show
Please make sure that the organism is correct or set significant = FALSE
avNNet
Loading required package: ggplot2
Loading required package: lattice
Fitting Repeat 1
# weights: 103
initial value 102.544684
final value 94.052910
converged
Fitting Repeat 2
# weights: 103
initial value 102.908490
final value 93.671508
converged
Fitting Repeat 3
# weights: 103
initial value 98.826972
final value 94.052910
converged
Fitting Repeat 4
# weights: 103
initial value 96.910276
final value 94.052910
converged
Fitting Repeat 5
# weights: 103
initial value 111.234455
final value 94.052910
converged
Fitting Repeat 1
# weights: 305
initial value 105.918155
final value 94.043243
converged
Fitting Repeat 2
# weights: 305
initial value 106.657888
final value 94.052910
converged
Fitting Repeat 3
# weights: 305
initial value 106.839144
final value 94.052910
converged
Fitting Repeat 4
# weights: 305
initial value 100.775911
final value 94.052910
converged
Fitting Repeat 5
# weights: 305
initial value 97.079857
final value 94.052910
converged
Fitting Repeat 1
# weights: 507
initial value 99.714936
iter 10 value 92.374989
iter 20 value 92.322825
iter 30 value 92.322677
iter 30 value 92.322677
iter 30 value 92.322677
final value 92.322677
converged
Fitting Repeat 2
# weights: 507
initial value 104.446494
final value 94.043243
converged
Fitting Repeat 3
# weights: 507
initial value 122.158061
final value 94.043243
converged
Fitting Repeat 4
# weights: 507
initial value 112.607235
iter 10 value 91.038674
iter 20 value 83.011059
iter 30 value 82.934341
final value 82.934232
converged
Fitting Repeat 5
# weights: 507
initial value 105.188941
final value 94.052910
converged
Fitting Repeat 1
# weights: 103
initial value 98.649003
iter 10 value 94.056933
iter 20 value 93.204179
iter 30 value 86.068704
iter 40 value 85.699133
iter 50 value 84.033548
iter 60 value 81.520041
iter 70 value 81.310646
iter 80 value 80.918241
iter 90 value 80.363529
iter 100 value 80.356120
final value 80.356120
stopped after 100 iterations
Fitting Repeat 2
# weights: 103
initial value 95.498579
iter 10 value 91.676530
iter 20 value 82.229116
iter 30 value 81.970991
iter 40 value 81.913540
iter 50 value 81.277677
iter 60 value 81.034059
iter 70 value 81.032808
iter 80 value 81.029818
iter 90 value 81.027260
iter 100 value 80.906267
final value 80.906267
stopped after 100 iterations
Fitting Repeat 3
# weights: 103
initial value 101.268542
iter 10 value 93.960055
iter 20 value 91.824426
iter 30 value 89.801958
iter 40 value 82.597571
iter 50 value 81.188726
iter 60 value 81.012667
iter 70 value 80.941721
iter 80 value 80.896674
iter 90 value 80.875433
iter 100 value 80.865778
final value 80.865778
stopped after 100 iterations
Fitting Repeat 4
# weights: 103
initial value 97.009581
iter 10 value 94.059964
iter 20 value 93.428054
iter 30 value 85.643038
iter 40 value 81.450965
iter 50 value 80.515918
iter 60 value 79.180017
iter 70 value 78.914047
iter 80 value 78.679970
iter 90 value 78.087122
iter 100 value 78.032019
final value 78.032019
stopped after 100 iterations
Fitting Repeat 5
# weights: 103
initial value 96.123588
iter 10 value 93.851917
iter 20 value 83.978364
iter 30 value 82.347010
iter 40 value 81.233173
iter 50 value 81.059001
iter 60 value 80.911198
iter 70 value 80.874694
final value 80.864923
converged
Fitting Repeat 1
# weights: 305
initial value 115.688308
iter 10 value 94.062133
iter 20 value 90.110591
iter 30 value 82.866132
iter 40 value 82.101423
iter 50 value 80.940827
iter 60 value 79.632898
iter 70 value 78.269857
iter 80 value 77.850476
iter 90 value 77.284818
iter 100 value 76.494891
final value 76.494891
stopped after 100 iterations
Fitting Repeat 2
# weights: 305
initial value 102.719896
iter 10 value 93.963406
iter 20 value 87.141451
iter 30 value 83.507782
iter 40 value 81.086792
iter 50 value 78.090509
iter 60 value 77.138938
iter 70 value 76.978935
iter 80 value 76.666223
iter 90 value 76.346734
iter 100 value 76.117392
final value 76.117392
stopped after 100 iterations
Fitting Repeat 3
# weights: 305
initial value 120.908503
iter 10 value 94.035974
iter 20 value 86.720824
iter 30 value 82.241268
iter 40 value 81.114087
iter 50 value 80.924762
iter 60 value 80.823412
iter 70 value 80.634119
iter 80 value 80.585064
iter 90 value 80.428337
iter 100 value 79.851064
final value 79.851064
stopped after 100 iterations
Fitting Repeat 4
# weights: 305
initial value 106.938057
iter 10 value 94.333372
iter 20 value 94.056884
iter 30 value 93.968186
iter 40 value 93.242066
iter 50 value 85.929735
iter 60 value 83.688656
iter 70 value 80.081162
iter 80 value 78.923520
iter 90 value 78.820616
iter 100 value 78.761591
final value 78.761591
stopped after 100 iterations
Fitting Repeat 5
# weights: 305
initial value 99.362379
iter 10 value 88.624953
iter 20 value 85.218109
iter 30 value 82.989362
iter 40 value 80.306154
iter 50 value 79.294939
iter 60 value 78.464901
iter 70 value 78.252034
iter 80 value 78.087817
iter 90 value 77.937782
iter 100 value 77.819010
final value 77.819010
stopped after 100 iterations
Fitting Repeat 1
# weights: 507
initial value 129.047261
iter 10 value 94.038558
iter 20 value 92.071529
iter 30 value 88.671315
iter 40 value 85.684675
iter 50 value 81.607232
iter 60 value 78.658416
iter 70 value 77.494944
iter 80 value 76.670409
iter 90 value 76.587742
iter 100 value 76.455074
final value 76.455074
stopped after 100 iterations
Fitting Repeat 2
# weights: 507
initial value 107.074276
iter 10 value 94.138376
iter 20 value 91.745745
iter 30 value 81.552684
iter 40 value 81.030258
iter 50 value 80.326989
iter 60 value 78.693429
iter 70 value 78.127007
iter 80 value 77.947599
iter 90 value 77.741266
iter 100 value 77.638099
final value 77.638099
stopped after 100 iterations
Fitting Repeat 3
# weights: 507
initial value 105.350865
iter 10 value 93.930269
iter 20 value 83.757448
iter 30 value 83.396795
iter 40 value 83.044160
iter 50 value 82.880603
iter 60 value 81.378545
iter 70 value 79.757264
iter 80 value 78.886256
iter 90 value 77.672704
iter 100 value 77.339214
final value 77.339214
stopped after 100 iterations
Fitting Repeat 4
# weights: 507
initial value 114.673530
iter 10 value 90.493312
iter 20 value 83.902558
iter 30 value 81.470797
iter 40 value 80.684128
iter 50 value 80.225273
iter 60 value 79.227769
iter 70 value 79.121205
iter 80 value 78.407710
iter 90 value 77.659659
iter 100 value 77.209343
final value 77.209343
stopped after 100 iterations
Fitting Repeat 5
# weights: 507
initial value 111.041979
iter 10 value 89.931758
iter 20 value 89.209610
iter 30 value 86.390864
iter 40 value 79.442150
iter 50 value 78.659230
iter 60 value 78.109883
iter 70 value 77.316230
iter 80 value 76.591818
iter 90 value 76.319146
iter 100 value 76.273463
final value 76.273463
stopped after 100 iterations
Fitting Repeat 1
# weights: 103
initial value 94.824306
final value 94.054407
converged
Fitting Repeat 2
# weights: 103
initial value 95.418737
iter 10 value 94.054264
iter 20 value 93.953547
iter 30 value 89.893131
iter 40 value 89.863046
final value 89.863025
converged
Fitting Repeat 3
# weights: 103
initial value 105.051628
final value 94.054543
converged
Fitting Repeat 4
# weights: 103
initial value 100.317364
final value 94.054569
converged
Fitting Repeat 5
# weights: 103
initial value 98.640414
iter 10 value 94.054655
iter 20 value 94.050351
iter 30 value 93.968163
iter 40 value 85.887551
iter 50 value 85.833329
iter 60 value 85.595858
iter 70 value 85.286007
iter 80 value 85.252660
iter 90 value 85.170740
iter 100 value 85.101102
final value 85.101102
stopped after 100 iterations
Fitting Repeat 1
# weights: 305
initial value 100.707191
iter 10 value 94.058220
iter 20 value 94.053094
iter 30 value 93.308954
iter 40 value 80.889660
iter 50 value 80.808908
iter 60 value 80.205043
iter 70 value 79.462975
iter 80 value 78.971247
iter 90 value 78.789183
iter 100 value 78.788106
final value 78.788106
stopped after 100 iterations
Fitting Repeat 2
# weights: 305
initial value 102.091510
iter 10 value 94.048229
iter 20 value 94.045403
iter 30 value 94.043328
final value 94.043318
converged
Fitting Repeat 3
# weights: 305
initial value 106.574295
iter 10 value 94.058353
iter 20 value 94.053491
iter 30 value 85.600693
iter 40 value 85.406866
final value 85.406842
converged
Fitting Repeat 4
# weights: 305
initial value 107.854783
iter 10 value 94.059777
iter 20 value 93.902652
iter 30 value 85.981451
iter 40 value 85.978924
iter 50 value 80.790415
iter 60 value 80.636875
iter 70 value 80.636514
iter 80 value 80.636409
final value 80.636369
converged
Fitting Repeat 5
# weights: 305
initial value 106.438039
iter 10 value 94.081764
iter 20 value 94.033415
iter 30 value 91.969724
iter 40 value 91.910958
iter 50 value 90.328096
iter 60 value 90.049352
iter 70 value 88.781588
iter 80 value 88.740102
iter 90 value 88.736818
iter 100 value 88.389326
final value 88.389326
stopped after 100 iterations
Fitting Repeat 1
# weights: 507
initial value 102.416532
iter 10 value 93.824573
iter 20 value 93.819291
iter 30 value 92.981914
iter 40 value 92.519165
iter 50 value 92.518005
iter 60 value 90.796594
iter 70 value 90.656769
iter 80 value 90.640676
iter 90 value 90.638368
iter 100 value 90.637349
final value 90.637349
stopped after 100 iterations
Fitting Repeat 2
# weights: 507
initial value 100.886952
iter 10 value 94.050818
iter 20 value 85.839117
iter 30 value 82.369697
iter 40 value 82.256091
iter 50 value 81.874897
iter 60 value 81.166872
iter 70 value 76.976933
iter 80 value 76.659781
iter 90 value 76.427608
iter 100 value 76.269257
final value 76.269257
stopped after 100 iterations
Fitting Repeat 3
# weights: 507
initial value 104.483081
iter 10 value 90.039585
iter 20 value 87.345797
iter 30 value 84.763793
iter 40 value 84.701709
iter 50 value 84.671056
iter 60 value 84.669541
final value 84.668326
converged
Fitting Repeat 4
# weights: 507
initial value 117.634570
iter 10 value 94.061204
iter 20 value 94.049620
iter 30 value 91.492991
iter 40 value 88.744021
iter 50 value 88.704652
iter 60 value 88.675035
iter 70 value 88.673647
iter 80 value 88.629314
iter 90 value 88.439867
iter 100 value 86.567411
final value 86.567411
stopped after 100 iterations
Fitting Repeat 5
# weights: 507
initial value 116.675533
iter 10 value 92.166746
iter 20 value 92.162974
iter 30 value 90.421170
iter 40 value 88.893818
iter 50 value 88.890128
final value 88.889938
converged
Fitting Repeat 1
# weights: 103
initial value 104.703208
final value 94.484211
converged
Fitting Repeat 2
# weights: 103
initial value 97.819261
final value 94.484211
converged
Fitting Repeat 3
# weights: 103
initial value 96.692472
final value 94.484211
converged
Fitting Repeat 4
# weights: 103
initial value 95.496273
final value 94.484211
converged
Fitting Repeat 5
# weights: 103
initial value 101.921455
final value 94.484211
converged
Fitting Repeat 1
# weights: 305
initial value 118.573699
final value 94.484211
converged
Fitting Repeat 2
# weights: 305
initial value 94.790835
final value 94.484211
converged
Fitting Repeat 3
# weights: 305
initial value 118.394311
final value 94.484211
converged
Fitting Repeat 4
# weights: 305
initial value 95.085565
final value 94.484211
converged
Fitting Repeat 5
# weights: 305
initial value 104.918245
iter 10 value 94.453678
final value 94.453333
converged
Fitting Repeat 1
# weights: 507
initial value 95.233277
final value 94.484211
converged
Fitting Repeat 2
# weights: 507
initial value 100.823506
iter 10 value 94.440765
iter 20 value 94.358725
iter 30 value 94.356343
final value 94.356334
converged
Fitting Repeat 3
# weights: 507
initial value 102.801797
final value 94.484211
converged
Fitting Repeat 4
# weights: 507
initial value 102.434593
final value 94.466823
converged
Fitting Repeat 5
# weights: 507
initial value 101.834550
iter 10 value 93.592908
final value 93.567525
converged
Fitting Repeat 1
# weights: 103
initial value 99.882313
iter 10 value 94.432445
iter 20 value 93.395981
iter 30 value 88.100304
iter 40 value 87.721120
iter 50 value 87.044355
iter 60 value 85.862593
iter 70 value 85.180981
iter 80 value 84.651849
iter 90 value 84.427756
final value 84.426207
converged
Fitting Repeat 2
# weights: 103
initial value 101.615335
iter 10 value 93.893131
iter 20 value 93.772370
iter 30 value 93.751648
iter 40 value 83.787304
iter 50 value 83.360797
iter 60 value 83.038523
iter 70 value 82.697517
iter 80 value 82.614616
iter 90 value 82.575839
iter 100 value 82.551153
final value 82.551153
stopped after 100 iterations
Fitting Repeat 3
# weights: 103
initial value 98.840318
iter 10 value 94.483602
iter 20 value 88.805166
iter 30 value 85.605670
iter 40 value 83.992673
iter 50 value 83.043309
iter 60 value 83.031248
iter 70 value 83.028492
final value 83.028297
converged
Fitting Repeat 4
# weights: 103
initial value 126.199903
iter 10 value 94.004964
iter 20 value 86.515758
iter 30 value 83.467010
iter 40 value 83.264073
iter 50 value 83.073854
iter 60 value 83.038214
iter 70 value 82.934828
final value 82.933889
converged
Fitting Repeat 5
# weights: 103
initial value 98.296210
iter 10 value 94.355789
iter 20 value 87.291969
iter 30 value 87.020466
iter 40 value 84.669683
iter 50 value 83.115093
iter 60 value 83.028342
final value 83.028297
converged
Fitting Repeat 1
# weights: 305
initial value 115.039816
iter 10 value 94.616263
iter 20 value 86.418604
iter 30 value 85.871396
iter 40 value 83.390133
iter 50 value 82.976841
iter 60 value 82.645299
iter 70 value 82.595778
iter 80 value 82.542783
iter 90 value 82.342944
iter 100 value 82.158300
final value 82.158300
stopped after 100 iterations
Fitting Repeat 2
# weights: 305
initial value 106.312333
iter 10 value 94.370867
iter 20 value 84.582007
iter 30 value 83.747830
iter 40 value 83.105760
iter 50 value 82.799616
iter 60 value 82.735021
iter 70 value 82.731734
iter 80 value 82.471741
iter 90 value 81.592455
iter 100 value 81.360477
final value 81.360477
stopped after 100 iterations
Fitting Repeat 3
# weights: 305
initial value 101.811592
iter 10 value 88.773393
iter 20 value 86.134037
iter 30 value 85.642322
iter 40 value 82.884964
iter 50 value 82.394827
iter 60 value 81.761593
iter 70 value 81.134932
iter 80 value 80.885039
iter 90 value 80.687694
iter 100 value 80.627029
final value 80.627029
stopped after 100 iterations
Fitting Repeat 4
# weights: 305
initial value 113.317217
iter 10 value 94.466229
iter 20 value 88.382794
iter 30 value 84.228237
iter 40 value 83.154919
iter 50 value 82.627935
iter 60 value 82.463601
iter 70 value 82.054772
iter 80 value 81.626465
iter 90 value 81.014276
iter 100 value 80.826498
final value 80.826498
stopped after 100 iterations
Fitting Repeat 5
# weights: 305
initial value 105.352824
iter 10 value 95.083495
iter 20 value 87.612734
iter 30 value 86.946158
iter 40 value 86.634264
iter 50 value 85.704504
iter 60 value 82.867983
iter 70 value 82.581335
iter 80 value 82.056952
iter 90 value 81.436916
iter 100 value 81.267649
final value 81.267649
stopped after 100 iterations
Fitting Repeat 1
# weights: 507
initial value 103.899332
iter 10 value 91.927320
iter 20 value 83.659228
iter 30 value 82.166631
iter 40 value 81.548679
iter 50 value 81.066442
iter 60 value 80.840560
iter 70 value 80.778486
iter 80 value 80.729002
iter 90 value 80.656387
iter 100 value 80.647400
final value 80.647400
stopped after 100 iterations
Fitting Repeat 2
# weights: 507
initial value 104.813903
iter 10 value 94.784267
iter 20 value 84.406505
iter 30 value 83.739419
iter 40 value 83.167836
iter 50 value 82.925731
iter 60 value 82.416860
iter 70 value 81.203242
iter 80 value 80.768669
iter 90 value 80.666584
iter 100 value 80.623878
final value 80.623878
stopped after 100 iterations
Fitting Repeat 3
# weights: 507
initial value 109.759636
iter 10 value 94.521787
iter 20 value 93.206081
iter 30 value 91.478713
iter 40 value 88.469976
iter 50 value 86.849064
iter 60 value 84.110940
iter 70 value 82.977930
iter 80 value 82.808563
iter 90 value 81.479527
iter 100 value 81.169599
final value 81.169599
stopped after 100 iterations
Fitting Repeat 4
# weights: 507
initial value 103.171056
iter 10 value 94.623997
iter 20 value 93.504375
iter 30 value 89.190219
iter 40 value 82.858689
iter 50 value 81.740572
iter 60 value 81.270071
iter 70 value 80.753503
iter 80 value 80.685432
iter 90 value 80.519900
iter 100 value 80.371883
final value 80.371883
stopped after 100 iterations
Fitting Repeat 5
# weights: 507
initial value 102.794061
iter 10 value 97.538376
iter 20 value 94.911909
iter 30 value 90.790322
iter 40 value 88.717829
iter 50 value 86.273678
iter 60 value 84.643936
iter 70 value 83.101546
iter 80 value 81.837464
iter 90 value 81.274118
iter 100 value 81.057892
final value 81.057892
stopped after 100 iterations
Fitting Repeat 1
# weights: 103
initial value 117.459582
final value 94.485700
converged
Fitting Repeat 2
# weights: 103
initial value 96.842622
final value 94.485829
converged
Fitting Repeat 3
# weights: 103
initial value 96.294890
final value 94.485895
converged
Fitting Repeat 4
# weights: 103
initial value 99.656117
final value 94.486056
converged
Fitting Repeat 5
# weights: 103
initial value 94.318255
iter 10 value 87.820867
iter 20 value 85.955477
iter 30 value 85.954677
iter 40 value 84.658372
iter 50 value 84.658154
iter 60 value 84.657363
final value 84.657180
converged
Fitting Repeat 1
# weights: 305
initial value 96.680685
iter 10 value 94.488859
iter 20 value 94.396739
iter 30 value 86.009833
iter 40 value 85.965144
iter 50 value 85.960755
iter 60 value 85.324928
iter 70 value 85.268244
iter 80 value 85.237330
iter 90 value 85.113389
iter 100 value 85.112914
final value 85.112914
stopped after 100 iterations
Fitting Repeat 2
# weights: 305
initial value 106.356787
iter 10 value 94.472067
iter 20 value 94.376824
iter 30 value 93.152475
iter 40 value 92.162574
iter 50 value 92.151776
iter 60 value 92.129563
final value 92.129530
converged
Fitting Repeat 3
# weights: 305
initial value 96.681686
iter 10 value 94.472014
iter 20 value 94.469707
iter 30 value 94.441124
iter 40 value 85.169968
iter 40 value 85.169968
final value 85.169963
converged
Fitting Repeat 4
# weights: 305
initial value 104.590277
iter 10 value 93.546032
iter 20 value 91.648476
iter 30 value 83.847313
iter 40 value 82.632019
iter 50 value 82.629131
iter 60 value 82.515313
iter 70 value 82.504622
iter 80 value 82.503151
iter 80 value 82.503151
final value 82.503151
converged
Fitting Repeat 5
# weights: 305
initial value 94.499257
final value 94.488885
converged
Fitting Repeat 1
# weights: 507
initial value 95.217112
iter 10 value 86.804159
iter 20 value 85.194523
iter 30 value 85.174509
iter 40 value 84.691501
iter 50 value 82.394685
iter 60 value 81.054570
iter 70 value 80.891621
iter 80 value 80.864626
iter 90 value 80.630323
iter 100 value 80.577662
final value 80.577662
stopped after 100 iterations
Fitting Repeat 2
# weights: 507
initial value 104.825970
iter 10 value 94.492379
iter 20 value 94.096914
iter 30 value 89.955401
iter 40 value 89.635566
iter 50 value 89.272373
iter 60 value 89.050608
iter 70 value 88.947833
iter 80 value 88.946239
iter 90 value 84.819146
iter 100 value 84.567076
final value 84.567076
stopped after 100 iterations
Fitting Repeat 3
# weights: 507
initial value 100.649278
iter 10 value 93.575423
iter 20 value 86.683767
iter 30 value 85.167901
iter 40 value 82.018928
iter 50 value 81.968044
iter 60 value 81.967354
iter 70 value 81.967128
iter 80 value 81.946203
iter 90 value 81.822516
iter 100 value 81.214159
final value 81.214159
stopped after 100 iterations
Fitting Repeat 4
# weights: 507
initial value 118.897509
iter 10 value 94.491619
iter 20 value 94.435908
iter 30 value 87.291500
iter 40 value 82.700691
final value 82.626991
converged
Fitting Repeat 5
# weights: 507
initial value 103.632337
iter 10 value 94.491275
iter 20 value 94.475257
iter 30 value 94.470774
iter 40 value 84.516906
iter 50 value 82.079438
iter 60 value 81.961897
final value 81.961895
converged
Fitting Repeat 1
# weights: 103
initial value 100.468055
iter 10 value 89.998104
iter 20 value 89.517508
final value 89.514642
converged
Fitting Repeat 2
# weights: 103
initial value 98.176632
final value 94.484211
converged
Fitting Repeat 3
# weights: 103
initial value 107.524703
final value 94.484211
converged
Fitting Repeat 4
# weights: 103
initial value 97.533542
final value 94.484211
converged
Fitting Repeat 5
# weights: 103
initial value 112.368223
final value 94.484211
converged
Fitting Repeat 1
# weights: 305
initial value 109.610638
final value 94.484211
converged
Fitting Repeat 2
# weights: 305
initial value 100.707189
final value 94.484211
converged
Fitting Repeat 3
# weights: 305
initial value 105.389841
iter 10 value 94.026542
iter 10 value 94.026542
iter 10 value 94.026542
final value 94.026542
converged
Fitting Repeat 4
# weights: 305
initial value 99.387909
final value 94.484211
converged
Fitting Repeat 5
# weights: 305
initial value 116.180072
final value 94.026542
converged
Fitting Repeat 1
# weights: 507
initial value 107.823993
final value 94.484211
converged
Fitting Repeat 2
# weights: 507
initial value 97.518497
final value 94.026542
converged
Fitting Repeat 3
# weights: 507
initial value 98.687735
iter 10 value 94.338744
iter 10 value 94.338744
iter 10 value 94.338744
final value 94.338744
converged
Fitting Repeat 4
# weights: 507
initial value 115.803869
final value 94.484211
converged
Fitting Repeat 5
# weights: 507
initial value 99.993135
iter 10 value 94.025798
iter 20 value 94.015484
final value 94.015335
converged
Fitting Repeat 1
# weights: 103
initial value 113.129972
iter 10 value 94.479505
iter 20 value 91.810642
iter 30 value 90.385613
iter 40 value 90.193376
iter 50 value 89.888528
iter 60 value 88.852791
iter 70 value 86.265343
iter 80 value 85.694024
iter 90 value 83.868798
iter 100 value 83.559071
final value 83.559071
stopped after 100 iterations
Fitting Repeat 2
# weights: 103
initial value 106.160613
iter 10 value 94.490003
iter 20 value 94.252569
iter 30 value 94.222076
iter 40 value 94.168232
iter 50 value 91.673940
iter 60 value 91.103008
iter 70 value 91.004881
iter 80 value 88.227724
iter 90 value 86.733569
iter 100 value 86.197076
final value 86.197076
stopped after 100 iterations
Fitting Repeat 3
# weights: 103
initial value 96.430495
iter 10 value 93.519938
iter 20 value 88.214196
iter 30 value 88.078130
iter 40 value 87.474052
iter 50 value 87.156474
iter 60 value 86.340920
iter 70 value 85.448461
iter 80 value 85.392941
final value 85.392287
converged
Fitting Repeat 4
# weights: 103
initial value 99.200178
iter 10 value 94.110020
iter 20 value 87.651484
iter 30 value 86.394456
iter 40 value 86.205870
iter 50 value 85.993152
iter 60 value 85.977005
final value 85.977003
converged
Fitting Repeat 5
# weights: 103
initial value 101.169508
iter 10 value 94.487012
iter 20 value 89.228502
iter 30 value 87.584026
iter 40 value 85.863399
iter 50 value 85.602629
iter 60 value 85.549660
final value 85.548024
converged
Fitting Repeat 1
# weights: 305
initial value 112.428607
iter 10 value 94.184485
iter 20 value 87.639571
iter 30 value 87.322396
iter 40 value 86.961483
iter 50 value 85.409779
iter 60 value 84.275708
iter 70 value 83.698393
iter 80 value 83.492939
iter 90 value 83.278547
iter 100 value 82.651503
final value 82.651503
stopped after 100 iterations
Fitting Repeat 2
# weights: 305
initial value 102.503906
iter 10 value 94.006777
iter 20 value 86.952720
iter 30 value 86.177180
iter 40 value 84.809524
iter 50 value 84.022706
iter 60 value 83.583267
iter 70 value 82.973907
iter 80 value 82.942450
iter 90 value 82.702109
iter 100 value 82.552733
final value 82.552733
stopped after 100 iterations
Fitting Repeat 3
# weights: 305
initial value 122.975541
iter 10 value 94.479498
iter 20 value 94.190577
iter 30 value 87.894289
iter 40 value 87.642503
iter 50 value 87.578127
iter 60 value 85.924878
iter 70 value 85.595836
iter 80 value 85.526835
iter 90 value 85.487732
iter 100 value 84.843712
final value 84.843712
stopped after 100 iterations
Fitting Repeat 4
# weights: 305
initial value 109.347417
iter 10 value 94.470501
iter 20 value 94.183216
iter 30 value 93.742346
iter 40 value 86.889365
iter 50 value 86.317820
iter 60 value 85.951981
iter 70 value 85.517852
iter 80 value 83.756444
iter 90 value 83.523611
iter 100 value 83.370017
final value 83.370017
stopped after 100 iterations
Fitting Repeat 5
# weights: 305
initial value 101.509981
iter 10 value 94.569133
iter 20 value 87.881125
iter 30 value 85.501326
iter 40 value 83.820112
iter 50 value 83.748799
iter 60 value 83.683465
iter 70 value 83.416458
iter 80 value 83.012563
iter 90 value 82.600676
iter 100 value 82.413564
final value 82.413564
stopped after 100 iterations
Fitting Repeat 1
# weights: 507
initial value 110.115164
iter 10 value 93.953954
iter 20 value 90.054211
iter 30 value 87.881651
iter 40 value 86.121192
iter 50 value 84.931707
iter 60 value 84.119838
iter 70 value 83.792835
iter 80 value 83.346692
iter 90 value 82.834962
iter 100 value 82.283500
final value 82.283500
stopped after 100 iterations
Fitting Repeat 2
# weights: 507
initial value 104.470889
iter 10 value 94.847237
iter 20 value 91.149115
iter 30 value 87.297036
iter 40 value 86.423074
iter 50 value 85.873985
iter 60 value 85.671015
iter 70 value 85.622660
iter 80 value 84.948409
iter 90 value 83.892363
iter 100 value 83.430493
final value 83.430493
stopped after 100 iterations
Fitting Repeat 3
# weights: 507
initial value 123.033757
iter 10 value 93.686971
iter 20 value 90.745826
iter 30 value 87.175118
iter 40 value 86.033183
iter 50 value 85.103381
iter 60 value 84.518341
iter 70 value 83.958500
iter 80 value 83.473338
iter 90 value 82.648453
iter 100 value 82.470231
final value 82.470231
stopped after 100 iterations
Fitting Repeat 4
# weights: 507
initial value 144.733708
iter 10 value 94.705462
iter 20 value 88.183497
iter 30 value 86.902820
iter 40 value 85.784980
iter 50 value 84.769611
iter 60 value 84.054494
iter 70 value 83.357582
iter 80 value 83.113001
iter 90 value 82.878973
iter 100 value 82.698097
final value 82.698097
stopped after 100 iterations
Fitting Repeat 5
# weights: 507
initial value 116.590757
iter 10 value 94.268531
iter 20 value 90.712792
iter 30 value 86.426342
iter 40 value 84.684849
iter 50 value 84.046875
iter 60 value 83.340838
iter 70 value 82.579901
iter 80 value 81.819020
iter 90 value 81.571699
iter 100 value 81.454434
final value 81.454434
stopped after 100 iterations
Fitting Repeat 1
# weights: 103
initial value 94.533171
final value 94.486034
converged
Fitting Repeat 2
# weights: 103
initial value 102.148584
final value 94.485877
converged
Fitting Repeat 3
# weights: 103
initial value 108.710743
final value 94.486010
converged
Fitting Repeat 4
# weights: 103
initial value 102.056843
final value 94.485814
converged
Fitting Repeat 5
# weights: 103
initial value 101.895659
final value 94.485751
converged
Fitting Repeat 1
# weights: 305
initial value 96.281910
iter 10 value 93.997943
iter 20 value 93.981182
iter 30 value 93.976715
iter 40 value 92.843836
iter 50 value 89.611271
iter 60 value 86.432668
iter 70 value 86.426416
iter 80 value 86.426206
iter 90 value 86.372355
iter 100 value 85.076311
final value 85.076311
stopped after 100 iterations
Fitting Repeat 2
# weights: 305
initial value 96.223582
iter 10 value 94.489071
iter 20 value 94.432865
iter 30 value 89.268250
iter 40 value 89.252002
iter 50 value 89.249178
iter 60 value 89.017165
iter 70 value 87.541782
iter 80 value 87.440319
iter 90 value 87.022448
iter 100 value 86.959732
final value 86.959732
stopped after 100 iterations
Fitting Repeat 3
# weights: 305
initial value 100.492431
iter 10 value 94.488788
iter 20 value 94.393735
iter 30 value 93.813178
iter 40 value 93.297308
iter 50 value 93.295431
iter 60 value 93.294814
iter 70 value 90.505766
iter 80 value 86.574735
iter 90 value 86.397977
iter 100 value 86.397437
final value 86.397437
stopped after 100 iterations
Fitting Repeat 4
# weights: 305
initial value 111.510425
iter 10 value 94.036148
iter 20 value 94.030817
iter 30 value 94.023938
iter 40 value 93.977339
iter 50 value 93.976518
iter 60 value 93.833065
iter 70 value 93.590465
iter 80 value 89.243515
iter 90 value 85.084657
iter 100 value 84.823228
final value 84.823228
stopped after 100 iterations
Fitting Repeat 5
# weights: 305
initial value 104.463756
iter 10 value 94.489591
iter 20 value 94.484765
iter 30 value 94.044397
iter 40 value 90.993027
iter 50 value 87.366365
iter 60 value 87.136372
iter 70 value 87.041249
final value 87.041207
converged
Fitting Repeat 1
# weights: 507
initial value 120.058574
iter 10 value 94.475669
iter 20 value 94.467790
final value 94.467739
converged
Fitting Repeat 2
# weights: 507
initial value 106.421192
iter 10 value 94.492284
iter 20 value 93.627687
iter 30 value 87.100791
iter 40 value 87.074149
iter 50 value 87.073752
final value 87.073548
converged
Fitting Repeat 3
# weights: 507
initial value 124.426724
iter 10 value 94.034754
iter 20 value 94.020832
iter 30 value 92.435667
iter 40 value 88.569910
iter 50 value 85.794651
iter 60 value 85.530017
final value 85.526953
converged
Fitting Repeat 4
# weights: 507
initial value 106.369197
iter 10 value 94.492110
iter 20 value 94.443122
iter 30 value 93.228997
iter 40 value 93.080462
iter 50 value 85.852453
iter 60 value 84.679332
final value 84.679330
converged
Fitting Repeat 5
# weights: 507
initial value 102.983774
iter 10 value 94.491672
iter 20 value 94.150977
iter 30 value 90.680683
iter 40 value 90.679195
iter 50 value 90.678971
iter 60 value 87.328278
iter 70 value 87.327871
iter 80 value 87.327292
iter 90 value 86.142097
iter 100 value 85.766353
final value 85.766353
stopped after 100 iterations
Fitting Repeat 1
# weights: 103
initial value 96.095012
final value 94.052910
converged
Fitting Repeat 2
# weights: 103
initial value 100.226913
final value 94.052910
converged
Fitting Repeat 3
# weights: 103
initial value 95.284064
final value 94.052910
converged
Fitting Repeat 4
# weights: 103
initial value 95.216663
final value 94.052910
converged
Fitting Repeat 5
# weights: 103
initial value 107.977038
final value 94.052910
converged
Fitting Repeat 1
# weights: 305
initial value 95.961911
final value 94.052910
converged
Fitting Repeat 2
# weights: 305
initial value 111.165362
final value 94.052910
converged
Fitting Repeat 3
# weights: 305
initial value 102.892532
iter 10 value 93.191653
iter 20 value 85.791909
iter 30 value 85.785812
final value 85.785715
converged
Fitting Repeat 4
# weights: 305
initial value 103.221404
iter 10 value 93.937873
final value 93.937870
converged
Fitting Repeat 5
# weights: 305
initial value 99.835248
iter 10 value 92.182859
iter 10 value 92.182859
iter 10 value 92.182859
final value 92.182859
converged
Fitting Repeat 1
# weights: 507
initial value 122.512514
iter 10 value 94.052910
iter 10 value 94.052910
iter 10 value 94.052910
final value 94.052910
converged
Fitting Repeat 2
# weights: 507
initial value 102.054778
final value 94.052910
converged
Fitting Repeat 3
# weights: 507
initial value 94.560593
iter 10 value 92.013790
iter 20 value 90.779618
iter 30 value 89.828045
iter 40 value 89.044759
iter 50 value 89.043879
final value 89.043872
converged
Fitting Repeat 4
# weights: 507
initial value 101.273285
final value 94.032967
converged
Fitting Repeat 5
# weights: 507
initial value 111.364921
final value 94.052910
converged
Fitting Repeat 1
# weights: 103
initial value 101.995103
iter 10 value 94.051511
iter 20 value 93.871564
iter 30 value 93.841187
iter 40 value 91.669794
iter 50 value 87.794480
iter 60 value 87.461528
iter 70 value 85.061127
iter 80 value 82.882110
iter 90 value 82.086473
iter 100 value 81.876591
final value 81.876591
stopped after 100 iterations
Fitting Repeat 2
# weights: 103
initial value 99.682409
iter 10 value 94.315709
iter 20 value 94.006925
iter 30 value 93.714968
iter 40 value 93.684528
iter 50 value 93.655637
iter 60 value 87.074364
iter 70 value 82.561661
iter 80 value 82.520809
iter 90 value 82.003870
iter 100 value 81.943940
final value 81.943940
stopped after 100 iterations
Fitting Repeat 3
# weights: 103
initial value 100.067738
iter 10 value 94.051827
iter 20 value 93.092622
iter 30 value 89.840185
iter 40 value 85.381461
iter 50 value 85.090902
iter 60 value 84.934649
iter 70 value 82.573450
iter 80 value 82.278973
iter 90 value 82.254381
final value 82.251774
converged
Fitting Repeat 4
# weights: 103
initial value 100.297752
iter 10 value 94.047906
iter 20 value 85.980411
iter 30 value 83.145109
iter 40 value 82.393928
iter 50 value 82.344621
iter 60 value 82.026418
iter 70 value 81.853525
iter 80 value 81.851525
final value 81.851522
converged
Fitting Repeat 5
# weights: 103
initial value 97.980124
iter 10 value 93.987069
iter 20 value 83.355118
iter 30 value 82.449662
iter 40 value 82.042489
iter 50 value 81.866192
iter 60 value 81.851539
final value 81.851522
converged
Fitting Repeat 1
# weights: 305
initial value 101.307105
iter 10 value 94.025622
iter 20 value 89.437193
iter 30 value 80.401590
iter 40 value 80.043614
iter 50 value 79.401972
iter 60 value 78.823964
iter 70 value 78.722164
iter 80 value 78.516179
iter 90 value 77.895424
iter 100 value 77.382084
final value 77.382084
stopped after 100 iterations
Fitting Repeat 2
# weights: 305
initial value 101.621525
iter 10 value 93.908689
iter 20 value 85.756791
iter 30 value 84.777174
iter 40 value 83.225879
iter 50 value 81.044905
iter 60 value 79.794664
iter 70 value 79.411807
iter 80 value 78.704044
iter 90 value 78.378158
iter 100 value 77.945831
final value 77.945831
stopped after 100 iterations
Fitting Repeat 3
# weights: 305
initial value 113.191843
iter 10 value 94.127854
iter 20 value 91.988338
iter 30 value 87.454783
iter 40 value 86.592281
iter 50 value 82.206647
iter 60 value 80.460833
iter 70 value 79.699163
iter 80 value 79.662687
iter 90 value 79.634259
iter 100 value 79.523165
final value 79.523165
stopped after 100 iterations
Fitting Repeat 4
# weights: 305
initial value 105.153138
iter 10 value 93.976727
iter 20 value 85.537688
iter 30 value 82.891115
iter 40 value 82.571914
iter 50 value 82.515984
iter 60 value 82.326991
iter 70 value 82.100206
iter 80 value 81.822692
iter 90 value 81.071544
iter 100 value 80.364513
final value 80.364513
stopped after 100 iterations
Fitting Repeat 5
# weights: 305
initial value 100.246927
iter 10 value 94.065396
iter 20 value 92.634921
iter 30 value 85.009525
iter 40 value 84.639855
iter 50 value 83.294420
iter 60 value 80.594171
iter 70 value 79.198973
iter 80 value 77.923268
iter 90 value 77.650402
iter 100 value 77.629940
final value 77.629940
stopped after 100 iterations
Fitting Repeat 1
# weights: 507
initial value 129.979561
iter 10 value 94.038835
iter 20 value 92.502895
iter 30 value 86.625512
iter 40 value 82.286732
iter 50 value 82.112457
iter 60 value 81.965481
iter 70 value 81.257118
iter 80 value 80.045516
iter 90 value 79.085073
iter 100 value 78.098908
final value 78.098908
stopped after 100 iterations
Fitting Repeat 2
# weights: 507
initial value 103.534519
iter 10 value 94.017118
iter 20 value 88.418216
iter 30 value 85.388484
iter 40 value 84.665563
iter 50 value 83.851134
iter 60 value 80.641585
iter 70 value 77.970960
iter 80 value 77.662033
iter 90 value 77.383009
iter 100 value 77.199068
final value 77.199068
stopped after 100 iterations
Fitting Repeat 3
# weights: 507
initial value 114.128203
iter 10 value 89.413732
iter 20 value 84.068679
iter 30 value 82.452236
iter 40 value 81.074245
iter 50 value 80.008857
iter 60 value 79.261815
iter 70 value 79.055499
iter 80 value 78.850769
iter 90 value 78.802262
iter 100 value 78.737663
final value 78.737663
stopped after 100 iterations
Fitting Repeat 4
# weights: 507
initial value 102.693296
iter 10 value 89.925691
iter 20 value 82.161292
iter 30 value 80.583486
iter 40 value 79.553761
iter 50 value 79.129812
iter 60 value 78.900591
iter 70 value 78.764855
iter 80 value 78.075482
iter 90 value 77.815957
iter 100 value 77.662773
final value 77.662773
stopped after 100 iterations
Fitting Repeat 5
# weights: 507
initial value 118.265106
iter 10 value 94.179388
iter 20 value 87.292994
iter 30 value 83.090308
iter 40 value 82.884258
iter 50 value 82.792930
iter 60 value 81.622457
iter 70 value 81.051623
iter 80 value 80.742915
iter 90 value 80.444564
iter 100 value 79.559156
final value 79.559156
stopped after 100 iterations
Fitting Repeat 1
# weights: 103
initial value 99.922116
final value 94.054480
converged
Fitting Repeat 2
# weights: 103
initial value 95.146980
final value 94.054771
converged
Fitting Repeat 3
# weights: 103
initial value 94.447318
final value 94.054757
converged
Fitting Repeat 4
# weights: 103
initial value 98.724386
final value 94.034683
converged
Fitting Repeat 5
# weights: 103
initial value 95.100450
iter 10 value 94.054517
iter 20 value 94.009614
iter 30 value 87.404270
iter 40 value 86.993856
iter 50 value 86.643105
iter 60 value 86.631257
iter 70 value 86.622689
final value 86.621885
converged
Fitting Repeat 1
# weights: 305
initial value 96.749595
iter 10 value 94.037764
iter 20 value 93.996488
iter 30 value 92.679471
iter 40 value 87.010497
iter 50 value 83.700476
iter 60 value 83.540227
iter 70 value 83.538732
iter 80 value 83.481132
iter 90 value 83.137549
iter 100 value 82.774383
final value 82.774383
stopped after 100 iterations
Fitting Repeat 2
# weights: 305
initial value 98.651509
iter 10 value 94.038174
iter 20 value 94.033825
iter 30 value 90.329491
final value 90.176055
converged
Fitting Repeat 3
# weights: 305
initial value 95.512625
iter 10 value 94.057385
iter 20 value 94.053062
final value 94.033113
converged
Fitting Repeat 4
# weights: 305
initial value 95.102252
iter 10 value 94.056390
final value 94.052906
converged
Fitting Repeat 5
# weights: 305
initial value 94.340106
iter 10 value 94.053859
final value 94.052923
converged
Fitting Repeat 1
# weights: 507
initial value 97.006161
iter 10 value 94.060618
iter 20 value 93.638095
iter 30 value 84.626106
iter 40 value 81.557372
iter 50 value 81.231697
iter 60 value 81.125358
iter 70 value 80.506553
iter 80 value 80.433413
iter 90 value 80.428363
iter 100 value 80.427693
final value 80.427693
stopped after 100 iterations
Fitting Repeat 2
# weights: 507
initial value 93.119504
iter 10 value 83.753442
iter 20 value 83.590605
iter 30 value 83.584467
iter 40 value 83.354042
iter 50 value 82.850483
iter 60 value 80.517737
iter 70 value 80.353864
final value 80.353168
converged
Fitting Repeat 3
# weights: 507
initial value 105.350018
iter 10 value 93.900006
iter 20 value 93.771463
iter 30 value 93.763887
iter 40 value 92.112816
iter 50 value 86.784800
iter 60 value 85.416008
iter 70 value 85.412816
iter 80 value 84.696524
iter 90 value 80.812193
iter 100 value 78.094926
final value 78.094926
stopped after 100 iterations
Fitting Repeat 4
# weights: 507
initial value 105.091572
iter 10 value 94.040941
iter 20 value 94.034554
iter 30 value 82.444455
iter 40 value 82.348989
iter 50 value 82.327459
final value 82.327394
converged
Fitting Repeat 5
# weights: 507
initial value 117.414308
iter 10 value 94.041672
iter 20 value 94.021205
iter 30 value 93.942144
iter 40 value 93.758407
iter 50 value 85.200069
iter 60 value 81.448773
iter 70 value 81.059674
iter 80 value 80.970071
iter 90 value 80.231076
iter 100 value 77.871235
final value 77.871235
stopped after 100 iterations
Fitting Repeat 1
# weights: 103
initial value 102.504644
final value 94.484211
converged
Fitting Repeat 2
# weights: 103
initial value 102.143743
final value 94.484211
converged
Fitting Repeat 3
# weights: 103
initial value 95.581875
final value 94.484211
converged
Fitting Repeat 4
# weights: 103
initial value 110.658378
final value 94.484211
converged
Fitting Repeat 5
# weights: 103
initial value 96.222300
final value 94.484211
converged
Fitting Repeat 1
# weights: 305
initial value 96.186584
final value 94.484211
converged
Fitting Repeat 2
# weights: 305
initial value 107.525495
final value 94.484211
converged
Fitting Repeat 3
# weights: 305
initial value 105.119902
final value 94.484211
converged
Fitting Repeat 4
# weights: 305
initial value 106.523576
final value 94.484211
converged
Fitting Repeat 5
# weights: 305
initial value 107.818636
final value 94.484211
converged
Fitting Repeat 1
# weights: 507
initial value 122.021465
final value 94.484211
converged
Fitting Repeat 2
# weights: 507
initial value 116.242826
final value 94.484211
converged
Fitting Repeat 3
# weights: 507
initial value 96.964177
final value 94.484211
converged
Fitting Repeat 4
# weights: 507
initial value 100.265345
final value 94.484211
converged
Fitting Repeat 5
# weights: 507
initial value 110.520541
iter 10 value 94.033646
iter 20 value 94.024582
final value 94.024564
converged
Fitting Repeat 1
# weights: 103
initial value 101.492757
iter 10 value 94.092266
iter 20 value 93.275249
iter 30 value 90.438186
iter 40 value 89.421123
iter 50 value 88.695209
iter 60 value 83.645611
iter 70 value 83.096596
iter 80 value 82.768000
iter 90 value 82.652143
iter 100 value 82.596526
final value 82.596526
stopped after 100 iterations
Fitting Repeat 2
# weights: 103
initial value 97.942416
iter 10 value 94.268721
iter 20 value 92.755714
iter 30 value 90.151606
iter 40 value 88.816761
iter 50 value 86.395002
iter 60 value 85.852541
iter 70 value 85.789036
iter 80 value 85.756817
final value 85.751111
converged
Fitting Repeat 3
# weights: 103
initial value 105.195043
iter 10 value 94.471800
iter 20 value 93.997913
iter 30 value 93.921590
iter 40 value 88.378053
iter 50 value 88.059684
iter 60 value 86.262795
iter 70 value 85.956056
iter 80 value 85.812670
iter 90 value 85.756690
final value 85.751110
converged
Fitting Repeat 4
# weights: 103
initial value 99.450976
iter 10 value 93.821042
iter 20 value 86.289171
iter 30 value 84.297485
iter 40 value 83.798776
iter 50 value 82.780415
iter 60 value 82.699353
iter 70 value 82.594059
final value 82.592470
converged
Fitting Repeat 5
# weights: 103
initial value 101.779183
iter 10 value 93.625511
iter 20 value 87.802153
iter 30 value 86.418523
iter 40 value 86.252765
iter 50 value 86.245984
iter 60 value 86.237413
iter 70 value 85.959179
iter 80 value 85.919637
iter 90 value 85.797194
iter 100 value 85.751183
final value 85.751183
stopped after 100 iterations
Fitting Repeat 1
# weights: 305
initial value 105.303630
iter 10 value 93.877128
iter 20 value 87.414558
iter 30 value 84.907328
iter 40 value 83.076222
iter 50 value 82.360078
iter 60 value 81.958574
iter 70 value 81.694898
iter 80 value 81.648246
iter 90 value 81.613772
iter 100 value 81.549217
final value 81.549217
stopped after 100 iterations
Fitting Repeat 2
# weights: 305
initial value 117.387978
iter 10 value 93.340284
iter 20 value 90.901366
iter 30 value 86.302309
iter 40 value 85.628620
iter 50 value 84.246999
iter 60 value 83.973544
iter 70 value 83.845351
iter 80 value 82.778794
iter 90 value 82.121438
iter 100 value 81.656483
final value 81.656483
stopped after 100 iterations
Fitting Repeat 3
# weights: 305
initial value 101.956130
iter 10 value 94.387168
iter 20 value 94.127641
iter 30 value 90.768646
iter 40 value 86.693038
iter 50 value 85.377216
iter 60 value 82.818787
iter 70 value 82.633190
iter 80 value 82.275999
iter 90 value 81.990110
iter 100 value 81.548630
final value 81.548630
stopped after 100 iterations
Fitting Repeat 4
# weights: 305
initial value 112.638169
iter 10 value 94.127658
iter 20 value 88.696747
iter 30 value 87.572529
iter 40 value 85.728051
iter 50 value 84.341321
iter 60 value 82.969253
iter 70 value 82.269743
iter 80 value 81.748952
iter 90 value 81.676924
iter 100 value 81.671971
final value 81.671971
stopped after 100 iterations
Fitting Repeat 5
# weights: 305
initial value 100.229944
iter 10 value 94.049704
iter 20 value 87.911101
iter 30 value 85.270457
iter 40 value 84.558469
iter 50 value 81.913336
iter 60 value 81.584916
iter 70 value 81.525256
iter 80 value 81.483935
iter 90 value 81.460699
iter 100 value 81.419311
final value 81.419311
stopped after 100 iterations
Fitting Repeat 1
# weights: 507
initial value 124.893665
iter 10 value 94.241752
iter 20 value 89.082405
iter 30 value 86.505347
iter 40 value 85.839430
iter 50 value 83.622473
iter 60 value 82.674482
iter 70 value 82.455802
iter 80 value 82.404548
iter 90 value 82.263150
iter 100 value 82.051466
final value 82.051466
stopped after 100 iterations
Fitting Repeat 2
# weights: 507
initial value 105.476414
iter 10 value 94.561026
iter 20 value 94.134532
iter 30 value 92.336142
iter 40 value 85.953824
iter 50 value 82.894944
iter 60 value 81.958693
iter 70 value 81.740199
iter 80 value 81.702755
iter 90 value 81.623726
iter 100 value 81.489845
final value 81.489845
stopped after 100 iterations
Fitting Repeat 3
# weights: 507
initial value 122.260372
iter 10 value 94.540400
iter 20 value 93.394367
iter 30 value 92.918155
iter 40 value 90.419139
iter 50 value 90.295128
iter 60 value 89.841885
iter 70 value 86.873110
iter 80 value 85.055102
iter 90 value 84.303388
iter 100 value 83.016502
final value 83.016502
stopped after 100 iterations
Fitting Repeat 4
# weights: 507
initial value 119.033915
iter 10 value 95.515799
iter 20 value 94.540992
iter 30 value 93.468351
iter 40 value 90.472225
iter 50 value 87.377193
iter 60 value 83.577663
iter 70 value 82.220200
iter 80 value 81.762382
iter 90 value 81.518194
iter 100 value 81.309365
final value 81.309365
stopped after 100 iterations
Fitting Repeat 5
# weights: 507
initial value 112.058153
iter 10 value 94.267274
iter 20 value 91.479856
iter 30 value 88.953690
iter 40 value 86.396834
iter 50 value 84.240066
iter 60 value 83.441397
iter 70 value 82.604644
iter 80 value 81.863273
iter 90 value 81.508610
iter 100 value 81.229092
final value 81.229092
stopped after 100 iterations
Fitting Repeat 1
# weights: 103
initial value 95.486458
final value 94.485870
converged
Fitting Repeat 2
# weights: 103
initial value 104.150356
iter 10 value 94.028377
iter 20 value 94.026916
final value 94.026897
converged
Fitting Repeat 3
# weights: 103
initial value 104.633690
iter 10 value 94.486024
iter 20 value 94.477915
iter 30 value 92.985800
iter 40 value 92.977497
iter 50 value 92.895823
final value 92.895502
converged
Fitting Repeat 4
# weights: 103
initial value 101.769769
final value 94.486044
converged
Fitting Repeat 5
# weights: 103
initial value 96.258926
final value 94.486049
converged
Fitting Repeat 1
# weights: 305
initial value 102.448970
iter 10 value 94.031417
iter 20 value 94.027746
iter 30 value 93.225670
iter 40 value 93.016840
iter 50 value 84.945722
iter 60 value 83.830333
iter 70 value 83.600546
iter 80 value 83.598137
final value 83.598070
converged
Fitting Repeat 2
# weights: 305
initial value 107.050140
iter 10 value 94.031850
iter 20 value 94.027159
iter 30 value 93.923531
iter 40 value 93.782562
iter 50 value 87.661682
iter 60 value 87.602381
iter 70 value 87.413447
iter 80 value 87.326283
iter 90 value 87.319890
iter 100 value 87.292064
final value 87.292064
stopped after 100 iterations
Fitting Repeat 3
# weights: 305
initial value 102.920434
final value 94.489415
converged
Fitting Repeat 4
# weights: 305
initial value 99.265193
iter 10 value 94.488499
iter 20 value 88.196016
iter 30 value 86.894833
iter 40 value 86.863766
iter 50 value 86.858787
iter 60 value 86.282309
iter 70 value 84.863960
iter 80 value 81.210158
iter 90 value 80.720268
iter 100 value 80.326796
final value 80.326796
stopped after 100 iterations
Fitting Repeat 5
# weights: 305
initial value 98.190748
iter 10 value 94.031973
iter 20 value 94.029865
iter 30 value 93.368581
iter 40 value 90.418520
iter 50 value 83.468506
iter 60 value 82.935136
iter 70 value 82.636033
iter 80 value 82.537827
iter 90 value 82.536106
iter 100 value 82.508100
final value 82.508100
stopped after 100 iterations
Fitting Repeat 1
# weights: 507
initial value 117.778766
iter 10 value 94.492758
iter 20 value 94.463384
iter 30 value 93.021772
iter 40 value 92.867558
iter 50 value 92.684389
iter 60 value 92.679059
iter 70 value 92.677460
iter 80 value 90.368154
iter 90 value 85.735709
iter 100 value 84.884948
final value 84.884948
stopped after 100 iterations
Fitting Repeat 2
# weights: 507
initial value 103.672610
iter 10 value 93.031825
iter 20 value 91.571406
iter 30 value 86.214076
iter 40 value 84.166714
iter 50 value 84.060103
iter 60 value 83.968639
final value 83.863313
converged
Fitting Repeat 3
# weights: 507
initial value 104.287996
iter 10 value 94.492195
iter 20 value 93.825601
iter 30 value 88.763674
iter 40 value 88.428752
iter 50 value 88.428676
iter 60 value 87.533651
iter 70 value 86.831908
iter 80 value 86.796916
iter 90 value 85.362731
iter 100 value 82.657414
final value 82.657414
stopped after 100 iterations
Fitting Repeat 4
# weights: 507
initial value 127.758010
iter 10 value 94.330957
iter 20 value 94.312233
iter 30 value 93.037874
iter 40 value 87.038552
iter 50 value 84.985536
iter 60 value 84.896815
iter 70 value 84.612362
iter 80 value 84.606273
iter 90 value 84.604523
final value 84.603621
converged
Fitting Repeat 5
# weights: 507
initial value 110.634375
iter 10 value 94.034575
iter 20 value 89.833656
iter 30 value 87.090441
iter 40 value 86.356771
iter 50 value 85.579600
iter 60 value 85.155242
iter 70 value 83.553551
iter 80 value 83.546511
iter 90 value 83.109530
iter 100 value 82.841184
final value 82.841184
stopped after 100 iterations
Fitting Repeat 1
# weights: 305
initial value 130.129182
iter 10 value 117.102596
iter 20 value 116.995146
iter 30 value 107.095581
iter 40 value 104.938654
iter 50 value 104.698745
iter 60 value 104.670939
final value 104.670932
converged
Fitting Repeat 2
# weights: 305
initial value 127.291994
iter 10 value 116.410974
iter 20 value 105.163633
iter 30 value 104.098159
iter 40 value 104.085965
iter 50 value 103.753368
iter 60 value 103.752891
final value 103.750244
converged
Fitting Repeat 3
# weights: 305
initial value 133.257473
iter 10 value 117.895077
iter 20 value 117.890605
final value 117.890584
converged
Fitting Repeat 4
# weights: 305
initial value 122.806710
iter 10 value 117.763031
iter 20 value 117.758690
iter 30 value 111.980920
iter 40 value 108.508206
iter 50 value 108.486481
iter 60 value 108.486211
iter 70 value 108.472493
iter 80 value 108.157720
iter 90 value 106.848287
iter 100 value 104.951922
final value 104.951922
stopped after 100 iterations
Fitting Repeat 5
# weights: 305
initial value 127.060562
iter 10 value 117.894820
iter 20 value 117.890253
iter 30 value 117.572116
iter 40 value 117.511395
iter 50 value 107.257024
final value 107.222975
converged
svmRadial
ranger
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls < cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls < cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls < cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls < cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
RUNIT TEST PROTOCOL -- Wed Mar 4 20:24:13 2026
***********************************************
Number of test functions: 7
Number of errors: 0
Number of failures: 0
1 Test Suite :
HPiP RUnit Tests - 7 test functions, 0 errors, 0 failures
Number of test functions: 7
Number of errors: 0
Number of failures: 0
Warning messages:
1: `repeats` has no meaning for this resampling method.
2: executing %dopar% sequentially: no parallel backend registered
>
>
>
>
> proc.time()
user system elapsed
20.833 0.521 70.198
HPiP.Rcheck/HPiP-Ex.timings
| name | user | system | elapsed | |
| FSmethod | 19.130 | 0.955 | 20.902 | |
| FreqInteractors | 0.159 | 0.011 | 0.170 | |
| calculateAAC | 0.015 | 0.002 | 0.019 | |
| calculateAutocor | 0.121 | 0.017 | 0.148 | |
| calculateCTDC | 0.036 | 0.003 | 0.040 | |
| calculateCTDD | 0.165 | 0.013 | 0.186 | |
| calculateCTDT | 0.065 | 0.009 | 0.081 | |
| calculateCTriad | 0.176 | 0.016 | 0.194 | |
| calculateDC | 0.032 | 0.004 | 0.039 | |
| calculateF | 0.105 | 0.002 | 0.112 | |
| calculateKSAAP | 0.033 | 0.003 | 0.036 | |
| calculateQD_Sm | 0.885 | 0.072 | 0.992 | |
| calculateTC | 0.583 | 0.068 | 0.667 | |
| calculateTC_Sm | 0.128 | 0.012 | 0.153 | |
| corr_plot | 19.023 | 0.924 | 20.673 | |
| enrichfindP | 0.205 | 0.043 | 11.471 | |
| enrichfind_hp | 0.016 | 0.003 | 0.919 | |
| enrichplot | 0.175 | 0.014 | 0.197 | |
| filter_missing_values | 0 | 0 | 0 | |
| getFASTA | 0.031 | 0.008 | 3.725 | |
| getHPI | 0.001 | 0.000 | 0.000 | |
| get_negativePPI | 0.000 | 0.000 | 0.001 | |
| get_positivePPI | 0.000 | 0.001 | 0.000 | |
| impute_missing_data | 0.000 | 0.000 | 0.001 | |
| plotPPI | 0.041 | 0.001 | 0.044 | |
| pred_ensembel | 6.531 | 0.141 | 6.255 | |
| var_imp | 18.445 | 1.012 | 20.586 | |