| Back to Multiple platform build/check report for BioC 3.23: simplified long |
|
This page was generated on 2026-05-07 11:36 -0400 (Thu, 07 May 2026).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 24.04.4 LTS) | x86_64 | 4.6.0 RC (2026-04-17 r89917) -- "Because it was There" | 4990 |
| kjohnson3 | macOS 13.7.7 Ventura | arm64 | 4.6.0 Patched (2026-04-24 r89963) -- "Because it was There" | 4723 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 1030/2418 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| HPiP 1.18.0 (landing page) Matineh Rahmatbakhsh
| nebbiolo1 | Linux (Ubuntu 24.04.4 LTS) / x86_64 | OK | OK | OK | |||||||||
| kjohnson3 | macOS 13.7.7 Ventura / arm64 | OK | OK | OK | OK | |||||||||
| See other builds for HPiP in R Universe. | ||||||||||||||
|
To the developers/maintainers of the HPiP package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/HPiP.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: HPiP |
| Version: 1.18.0 |
| Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:HPiP.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings HPiP_1.18.0.tar.gz |
| StartedAt: 2026-05-06 20:42:54 -0400 (Wed, 06 May 2026) |
| EndedAt: 2026-05-06 20:46:00 -0400 (Wed, 06 May 2026) |
| EllapsedTime: 186.2 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: HPiP.Rcheck |
| Warnings: 0 |
##############################################################################
##############################################################################
###
### Running command:
###
### /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:HPiP.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings HPiP_1.18.0.tar.gz
###
##############################################################################
##############################################################################
* using log directory ‘/Users/biocbuild/bbs-3.23-bioc/meat/HPiP.Rcheck’
* using R version 4.6.0 Patched (2026-04-24 r89963)
* using platform: aarch64-apple-darwin23
* R was compiled by
Apple clang version 17.0.0 (clang-1700.3.19.1)
GNU Fortran (GCC) 14.2.0
* running under: macOS Tahoe 26.3.1
* using session charset: UTF-8
* current time: 2026-05-07 00:42:54 UTC
* using option ‘--no-vignettes’
* checking for file ‘HPiP/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘HPiP’ version ‘1.18.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘HPiP’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... NOTE
License stub is invalid DCF.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... NOTE
checkRd: (-1) getHPI.Rd:29: Lost braces
29 | then the Kronecker product is the code{(pm × qn)} block matrix
| ^
* checking Rd metadata ... OK
* checking Rd cross-references ... INFO
Package unavailable to check Rd xrefs: ‘ftrCOOL’
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking R/sysdata.rda ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
corr_plot 17.011 0.092 17.156
var_imp 16.945 0.086 17.064
FSmethod 16.940 0.064 17.251
pred_ensembel 6.115 0.153 5.505
enrichfindP 0.203 0.042 10.977
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
Running ‘runTests.R’
OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: 2 NOTEs
See
‘/Users/biocbuild/bbs-3.23-bioc/meat/HPiP.Rcheck/00check.log’
for details.
HPiP.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL HPiP ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/4.6/Resources/library’ * installing *source* package ‘HPiP’ ... ** this is package ‘HPiP’ version ‘1.18.0’ ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (HPiP)
HPiP.Rcheck/tests/runTests.Rout
R version 4.6.0 Patched (2026-04-24 r89963) -- "Because it was There"
Copyright (C) 2026 The R Foundation for Statistical Computing
Platform: aarch64-apple-darwin23
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> BiocGenerics:::testPackage('HPiP')
No results to show
Please make sure that the organism is correct or set significant = FALSE
No results to show
Please make sure that the organism is correct or set significant = FALSE
No results to show
Please make sure that the organism is correct or set significant = FALSE
No results to show
Please make sure that the organism is correct or set significant = FALSE
No results to show
Please make sure that the organism is correct or set significant = FALSE
No results to show
Please make sure that the organism is correct or set significant = FALSE
No results to show
Please make sure that the organism is correct or set significant = FALSE
No results to show
Please make sure that the organism is correct or set significant = FALSE
avNNet
Loading required package: ggplot2
Loading required package: lattice
Fitting Repeat 1
# weights: 103
initial value 96.385354
final value 94.484211
converged
Fitting Repeat 2
# weights: 103
initial value 106.647374
final value 94.484211
converged
Fitting Repeat 3
# weights: 103
initial value 110.328057
final value 94.484211
converged
Fitting Repeat 4
# weights: 103
initial value 101.012932
final value 94.484211
converged
Fitting Repeat 5
# weights: 103
initial value 96.261750
final value 94.484211
converged
Fitting Repeat 1
# weights: 305
initial value 98.601220
final value 94.484211
converged
Fitting Repeat 2
# weights: 305
initial value 103.189401
final value 94.484211
converged
Fitting Repeat 3
# weights: 305
initial value 103.933572
final value 93.811828
converged
Fitting Repeat 4
# weights: 305
initial value 98.030020
iter 10 value 93.811847
final value 93.811828
converged
Fitting Repeat 5
# weights: 305
initial value 98.370233
iter 10 value 93.811831
final value 93.811828
converged
Fitting Repeat 1
# weights: 507
initial value 97.835413
iter 10 value 93.811829
iter 10 value 93.811828
iter 10 value 93.811828
final value 93.811828
converged
Fitting Repeat 2
# weights: 507
initial value 128.578658
iter 10 value 93.827811
iter 20 value 93.634312
iter 30 value 93.628065
final value 93.628061
converged
Fitting Repeat 3
# weights: 507
initial value 100.071001
iter 10 value 93.811828
iter 10 value 93.811828
iter 10 value 93.811828
final value 93.811828
converged
Fitting Repeat 4
# weights: 507
initial value 111.794369
iter 10 value 93.811830
final value 93.811828
converged
Fitting Repeat 5
# weights: 507
initial value 120.123395
final value 94.484211
converged
Fitting Repeat 1
# weights: 103
initial value 105.480024
iter 10 value 94.392006
iter 20 value 92.319916
iter 30 value 88.844586
iter 40 value 86.454831
iter 50 value 84.136799
iter 60 value 82.886033
iter 70 value 82.290620
iter 80 value 82.114747
iter 90 value 82.108649
final value 82.106631
converged
Fitting Repeat 2
# weights: 103
initial value 108.677019
iter 10 value 94.412610
iter 20 value 92.448419
iter 30 value 89.884135
iter 40 value 87.020193
iter 50 value 86.138606
iter 60 value 83.410846
iter 70 value 82.806699
iter 80 value 80.701519
iter 90 value 79.849172
iter 100 value 79.495858
final value 79.495858
stopped after 100 iterations
Fitting Repeat 3
# weights: 103
initial value 99.415431
iter 10 value 94.488484
iter 20 value 93.236530
iter 30 value 84.720453
iter 40 value 81.955749
iter 50 value 81.187507
iter 60 value 80.541396
iter 70 value 80.462983
final value 80.457530
converged
Fitting Repeat 4
# weights: 103
initial value 100.995902
iter 10 value 94.463080
iter 20 value 94.025719
iter 30 value 93.965882
iter 40 value 91.788314
iter 50 value 86.521835
iter 60 value 85.922977
iter 70 value 85.830786
iter 80 value 85.784368
iter 90 value 82.815469
iter 100 value 82.173672
final value 82.173672
stopped after 100 iterations
Fitting Repeat 5
# weights: 103
initial value 97.612782
iter 10 value 94.462931
iter 20 value 91.152133
iter 30 value 85.335850
iter 40 value 84.848140
iter 50 value 82.501160
iter 60 value 80.480169
iter 70 value 79.553067
iter 80 value 79.536822
iter 90 value 79.528990
final value 79.525788
converged
Fitting Repeat 1
# weights: 305
initial value 104.741622
iter 10 value 96.478115
iter 20 value 94.460247
iter 30 value 89.574145
iter 40 value 87.135661
iter 50 value 83.791145
iter 60 value 83.569589
iter 70 value 82.766315
iter 80 value 82.083456
iter 90 value 80.305331
iter 100 value 78.784745
final value 78.784745
stopped after 100 iterations
Fitting Repeat 2
# weights: 305
initial value 108.166744
iter 10 value 94.552191
iter 20 value 93.825324
iter 30 value 91.779299
iter 40 value 90.382273
iter 50 value 85.544239
iter 60 value 84.382002
iter 70 value 83.664104
iter 80 value 82.302893
iter 90 value 79.975968
iter 100 value 79.582934
final value 79.582934
stopped after 100 iterations
Fitting Repeat 3
# weights: 305
initial value 100.038684
iter 10 value 94.709587
iter 20 value 94.112415
iter 30 value 85.454344
iter 40 value 83.563817
iter 50 value 82.910216
iter 60 value 82.745288
iter 70 value 82.302765
iter 80 value 81.003401
iter 90 value 80.238223
iter 100 value 79.657844
final value 79.657844
stopped after 100 iterations
Fitting Repeat 4
# weights: 305
initial value 108.537684
iter 10 value 94.407008
iter 20 value 88.896237
iter 30 value 83.996055
iter 40 value 80.809660
iter 50 value 78.742472
iter 60 value 78.565089
iter 70 value 78.368141
iter 80 value 78.209976
iter 90 value 78.113568
iter 100 value 77.987555
final value 77.987555
stopped after 100 iterations
Fitting Repeat 5
# weights: 305
initial value 121.623129
iter 10 value 94.579917
iter 20 value 92.642142
iter 30 value 92.498424
iter 40 value 91.717754
iter 50 value 86.528219
iter 60 value 85.869845
iter 70 value 82.263313
iter 80 value 80.304678
iter 90 value 79.803158
iter 100 value 79.755108
final value 79.755108
stopped after 100 iterations
Fitting Repeat 1
# weights: 507
initial value 114.464775
iter 10 value 94.636884
iter 20 value 91.696782
iter 30 value 90.556434
iter 40 value 85.890780
iter 50 value 84.151793
iter 60 value 83.940802
iter 70 value 83.165019
iter 80 value 81.847994
iter 90 value 81.471601
iter 100 value 80.559943
final value 80.559943
stopped after 100 iterations
Fitting Repeat 2
# weights: 507
initial value 114.116023
iter 10 value 94.458972
iter 20 value 90.398717
iter 30 value 84.365702
iter 40 value 82.260127
iter 50 value 81.377012
iter 60 value 81.215382
iter 70 value 80.945548
iter 80 value 80.749084
iter 90 value 80.113377
iter 100 value 79.142998
final value 79.142998
stopped after 100 iterations
Fitting Repeat 3
# weights: 507
initial value 126.892913
iter 10 value 94.207259
iter 20 value 85.832771
iter 30 value 83.609584
iter 40 value 83.165367
iter 50 value 80.496994
iter 60 value 78.328226
iter 70 value 78.116168
iter 80 value 77.955137
iter 90 value 77.780962
iter 100 value 77.729591
final value 77.729591
stopped after 100 iterations
Fitting Repeat 4
# weights: 507
initial value 109.150205
iter 10 value 94.842281
iter 20 value 94.097609
iter 30 value 86.413321
iter 40 value 83.309761
iter 50 value 82.792167
iter 60 value 79.639979
iter 70 value 78.464786
iter 80 value 78.345879
iter 90 value 78.269020
iter 100 value 78.228929
final value 78.228929
stopped after 100 iterations
Fitting Repeat 5
# weights: 507
initial value 126.954758
iter 10 value 95.871424
iter 20 value 88.108102
iter 30 value 83.779307
iter 40 value 80.702342
iter 50 value 79.347214
iter 60 value 79.089233
iter 70 value 78.855859
iter 80 value 78.716005
iter 90 value 78.261313
iter 100 value 78.077579
final value 78.077579
stopped after 100 iterations
Fitting Repeat 1
# weights: 103
initial value 104.403242
final value 94.485754
converged
Fitting Repeat 2
# weights: 103
initial value 103.905710
final value 94.485896
converged
Fitting Repeat 3
# weights: 103
initial value 95.483124
final value 94.485649
converged
Fitting Repeat 4
# weights: 103
initial value 95.993239
final value 94.486068
converged
Fitting Repeat 5
# weights: 103
initial value 98.090164
iter 10 value 94.485846
iter 20 value 94.474062
iter 30 value 93.838520
iter 40 value 85.700788
iter 50 value 85.692393
iter 50 value 85.692392
iter 60 value 85.093108
iter 70 value 85.057484
final value 85.057449
converged
Fitting Repeat 1
# weights: 305
initial value 99.115349
iter 10 value 94.488939
iter 20 value 93.973840
final value 93.812757
converged
Fitting Repeat 2
# weights: 305
initial value 101.473036
iter 10 value 94.489752
iter 20 value 94.484483
iter 30 value 92.330618
iter 40 value 91.927151
final value 91.927109
converged
Fitting Repeat 3
# weights: 305
initial value 96.726674
iter 10 value 93.779440
iter 20 value 93.778772
iter 30 value 93.776565
iter 40 value 93.775217
iter 50 value 93.774814
iter 60 value 93.773380
iter 60 value 93.773379
final value 93.773379
converged
Fitting Repeat 4
# weights: 305
initial value 94.850660
iter 10 value 94.488953
iter 20 value 94.484219
iter 30 value 90.892450
iter 40 value 85.962686
iter 50 value 83.479466
iter 60 value 83.478149
iter 70 value 83.311985
final value 83.311904
converged
Fitting Repeat 5
# weights: 305
initial value 94.713759
iter 10 value 94.486205
iter 20 value 86.903114
iter 30 value 82.515264
iter 40 value 82.508482
final value 82.508414
converged
Fitting Repeat 1
# weights: 507
initial value 115.992875
iter 10 value 94.492616
iter 20 value 94.361996
iter 30 value 91.684792
iter 40 value 91.345382
final value 91.276475
converged
Fitting Repeat 2
# weights: 507
initial value 95.905902
iter 10 value 94.066705
iter 20 value 91.304030
iter 30 value 91.300588
iter 40 value 91.015332
iter 50 value 90.993552
iter 60 value 90.992175
iter 70 value 90.990603
iter 80 value 90.987235
final value 90.985568
converged
Fitting Repeat 3
# weights: 507
initial value 147.923124
iter 10 value 93.820829
iter 20 value 93.819122
iter 30 value 93.319555
iter 40 value 92.497443
iter 50 value 85.631862
iter 60 value 85.206508
iter 70 value 85.197536
iter 80 value 83.655977
iter 90 value 80.028503
iter 100 value 79.463106
final value 79.463106
stopped after 100 iterations
Fitting Repeat 4
# weights: 507
initial value 102.600588
iter 10 value 94.495317
iter 20 value 94.453070
iter 30 value 93.882899
iter 40 value 91.700122
iter 50 value 91.691010
iter 60 value 91.689536
iter 70 value 91.686448
iter 80 value 91.673333
iter 90 value 91.669841
iter 100 value 86.443895
final value 86.443895
stopped after 100 iterations
Fitting Repeat 5
# weights: 507
initial value 116.141370
iter 10 value 93.820205
iter 20 value 93.818121
iter 30 value 93.682929
iter 40 value 93.629140
iter 50 value 93.628939
iter 60 value 93.628887
final value 93.628873
converged
Fitting Repeat 1
# weights: 103
initial value 98.683485
final value 94.052910
converged
Fitting Repeat 2
# weights: 103
initial value 97.882930
iter 10 value 92.247458
iter 20 value 92.222391
iter 30 value 92.222324
iter 40 value 92.222271
iter 50 value 92.222224
final value 92.222222
converged
Fitting Repeat 3
# weights: 103
initial value 95.983366
final value 94.052910
converged
Fitting Repeat 4
# weights: 103
initial value 98.935477
final value 94.052910
converged
Fitting Repeat 5
# weights: 103
initial value 104.505543
final value 94.052910
converged
Fitting Repeat 1
# weights: 305
initial value 107.550609
final value 94.052910
converged
Fitting Repeat 2
# weights: 305
initial value 95.132546
final value 94.052910
converged
Fitting Repeat 3
# weights: 305
initial value 106.776701
final value 94.052910
converged
Fitting Repeat 4
# weights: 305
initial value 95.949981
iter 10 value 92.230004
iter 20 value 92.222266
final value 92.222223
converged
Fitting Repeat 5
# weights: 305
initial value 116.573038
final value 94.052910
converged
Fitting Repeat 1
# weights: 507
initial value 100.260768
iter 10 value 92.297334
iter 20 value 92.281096
final value 92.281082
converged
Fitting Repeat 2
# weights: 507
initial value 115.006040
iter 10 value 92.287033
iter 20 value 92.281087
final value 92.281082
converged
Fitting Repeat 3
# weights: 507
initial value 96.892013
final value 94.052911
converged
Fitting Repeat 4
# weights: 507
initial value 96.999303
iter 10 value 93.694474
iter 20 value 93.668596
iter 20 value 93.668596
iter 20 value 93.668596
final value 93.668596
converged
Fitting Repeat 5
# weights: 507
initial value 127.817848
iter 10 value 92.617671
iter 20 value 92.281448
final value 92.281082
converged
Fitting Repeat 1
# weights: 103
initial value 101.265434
iter 10 value 95.927126
iter 20 value 94.056445
iter 30 value 93.408578
iter 40 value 93.163429
iter 50 value 92.821204
iter 60 value 92.738118
iter 70 value 86.359112
iter 80 value 85.860432
iter 90 value 85.616738
iter 100 value 84.405836
final value 84.405836
stopped after 100 iterations
Fitting Repeat 2
# weights: 103
initial value 101.886440
iter 10 value 93.779294
iter 20 value 89.832110
iter 30 value 84.125702
iter 40 value 83.442224
iter 50 value 81.805655
iter 60 value 81.570606
iter 70 value 80.969059
iter 80 value 80.831875
iter 90 value 80.461059
iter 100 value 80.279691
final value 80.279691
stopped after 100 iterations
Fitting Repeat 3
# weights: 103
initial value 98.295697
iter 10 value 92.038176
iter 20 value 86.036755
iter 30 value 83.848490
iter 40 value 83.123241
iter 50 value 82.497018
iter 60 value 82.399158
iter 70 value 82.365304
final value 82.365278
converged
Fitting Repeat 4
# weights: 103
initial value 97.389665
iter 10 value 94.048442
iter 20 value 86.825604
iter 30 value 84.719036
iter 40 value 84.230408
iter 50 value 83.737072
iter 60 value 83.366250
iter 70 value 81.285671
iter 80 value 80.579766
iter 90 value 80.281925
final value 80.279436
converged
Fitting Repeat 5
# weights: 103
initial value 100.173216
iter 10 value 93.434464
iter 20 value 87.003329
iter 30 value 86.672690
iter 40 value 85.448503
iter 50 value 83.532781
iter 60 value 83.090702
iter 70 value 81.397344
iter 80 value 80.445653
iter 90 value 80.280427
final value 80.279435
converged
Fitting Repeat 1
# weights: 305
initial value 108.250278
iter 10 value 87.970108
iter 20 value 87.032142
iter 30 value 83.673026
iter 40 value 82.868318
iter 50 value 81.018452
iter 60 value 79.924335
iter 70 value 79.732770
iter 80 value 79.720938
iter 90 value 79.685292
iter 100 value 79.654192
final value 79.654192
stopped after 100 iterations
Fitting Repeat 2
# weights: 305
initial value 105.067515
iter 10 value 93.280242
iter 20 value 92.856124
iter 30 value 87.228544
iter 40 value 85.705623
iter 50 value 85.190159
iter 60 value 84.707793
iter 70 value 83.786070
iter 80 value 81.454213
iter 90 value 79.850726
iter 100 value 79.228348
final value 79.228348
stopped after 100 iterations
Fitting Repeat 3
# weights: 305
initial value 119.872074
iter 10 value 91.551650
iter 20 value 86.895317
iter 30 value 85.473989
iter 40 value 82.074671
iter 50 value 80.989112
iter 60 value 80.715300
iter 70 value 80.630443
iter 80 value 79.849297
iter 90 value 79.266744
iter 100 value 78.846310
final value 78.846310
stopped after 100 iterations
Fitting Repeat 4
# weights: 305
initial value 109.653958
iter 10 value 93.953753
iter 20 value 92.869666
iter 30 value 88.129287
iter 40 value 86.540778
iter 50 value 83.689006
iter 60 value 80.628881
iter 70 value 80.329833
iter 80 value 80.186307
iter 90 value 79.840530
iter 100 value 79.163795
final value 79.163795
stopped after 100 iterations
Fitting Repeat 5
# weights: 305
initial value 98.001689
iter 10 value 88.451666
iter 20 value 83.174902
iter 30 value 82.054312
iter 40 value 79.745478
iter 50 value 78.460340
iter 60 value 78.414433
iter 70 value 78.326754
iter 80 value 78.103926
iter 90 value 77.934652
iter 100 value 77.903123
final value 77.903123
stopped after 100 iterations
Fitting Repeat 1
# weights: 507
initial value 110.748483
iter 10 value 94.057145
iter 20 value 92.962680
iter 30 value 91.379351
iter 40 value 84.721768
iter 50 value 83.589103
iter 60 value 81.138116
iter 70 value 79.547455
iter 80 value 78.689919
iter 90 value 78.509410
iter 100 value 78.368207
final value 78.368207
stopped after 100 iterations
Fitting Repeat 2
# weights: 507
initial value 119.901420
iter 10 value 93.476742
iter 20 value 91.435836
iter 30 value 87.658221
iter 40 value 86.450253
iter 50 value 83.544189
iter 60 value 82.368850
iter 70 value 79.916150
iter 80 value 79.298943
iter 90 value 78.965234
iter 100 value 78.904024
final value 78.904024
stopped after 100 iterations
Fitting Repeat 3
# weights: 507
initial value 106.842216
iter 10 value 93.233483
iter 20 value 86.526659
iter 30 value 82.161686
iter 40 value 81.720779
iter 50 value 81.073762
iter 60 value 80.175057
iter 70 value 78.759207
iter 80 value 78.579666
iter 90 value 78.385015
iter 100 value 78.270980
final value 78.270980
stopped after 100 iterations
Fitting Repeat 4
# weights: 507
initial value 109.851991
iter 10 value 94.159490
iter 20 value 93.435127
iter 30 value 93.094425
iter 40 value 92.560096
iter 50 value 86.788569
iter 60 value 85.201394
iter 70 value 83.650237
iter 80 value 82.652774
iter 90 value 82.452468
iter 100 value 80.729553
final value 80.729553
stopped after 100 iterations
Fitting Repeat 5
# weights: 507
initial value 113.240676
iter 10 value 94.040656
iter 20 value 91.084850
iter 30 value 84.618657
iter 40 value 80.967117
iter 50 value 79.916485
iter 60 value 79.195512
iter 70 value 78.605855
iter 80 value 78.331495
iter 90 value 78.002011
iter 100 value 77.861563
final value 77.861563
stopped after 100 iterations
Fitting Repeat 1
# weights: 103
initial value 97.577489
final value 94.054804
converged
Fitting Repeat 2
# weights: 103
initial value 96.729792
final value 94.054538
converged
Fitting Repeat 3
# weights: 103
initial value 103.020568
final value 94.054711
converged
Fitting Repeat 4
# weights: 103
initial value 103.698901
iter 10 value 94.054408
iter 20 value 94.052912
iter 20 value 94.052912
iter 20 value 94.052912
final value 94.052912
converged
Fitting Repeat 5
# weights: 103
initial value 99.353651
final value 94.054600
converged
Fitting Repeat 1
# weights: 305
initial value 107.131343
iter 10 value 93.379088
iter 20 value 87.022275
iter 30 value 85.926080
iter 40 value 85.601628
iter 50 value 85.591619
iter 60 value 85.591123
final value 85.590854
converged
Fitting Repeat 2
# weights: 305
initial value 112.021680
iter 10 value 94.058184
iter 20 value 94.053263
final value 94.053235
converged
Fitting Repeat 3
# weights: 305
initial value 101.027516
iter 10 value 94.057649
iter 20 value 94.052930
iter 30 value 93.353956
iter 40 value 92.287672
final value 92.286188
converged
Fitting Repeat 4
# weights: 305
initial value 101.854514
iter 10 value 92.233987
iter 20 value 92.226773
iter 30 value 92.224256
iter 40 value 92.223832
final value 92.223160
converged
Fitting Repeat 5
# weights: 305
initial value 102.047885
iter 10 value 94.057812
iter 20 value 89.175073
iter 30 value 86.908139
iter 40 value 86.907255
final value 86.906781
converged
Fitting Repeat 1
# weights: 507
initial value 99.846331
iter 10 value 93.536092
iter 20 value 92.301753
iter 30 value 92.296803
iter 40 value 91.159761
iter 50 value 84.874103
iter 60 value 84.502895
final value 84.497652
converged
Fitting Repeat 2
# weights: 507
initial value 113.624648
iter 10 value 94.061099
iter 20 value 94.006456
iter 30 value 92.310178
iter 40 value 92.305030
iter 50 value 92.292256
iter 60 value 84.557986
iter 70 value 84.118675
iter 80 value 84.116698
iter 90 value 84.076844
iter 100 value 84.025000
final value 84.025000
stopped after 100 iterations
Fitting Repeat 3
# weights: 507
initial value 94.335353
iter 10 value 85.851470
iter 20 value 81.736229
iter 30 value 81.706393
iter 40 value 81.704834
iter 50 value 81.698300
iter 60 value 81.113797
iter 70 value 81.018965
iter 80 value 79.963215
iter 90 value 79.824618
iter 100 value 79.803934
final value 79.803934
stopped after 100 iterations
Fitting Repeat 4
# weights: 507
initial value 95.611989
iter 10 value 94.061538
iter 20 value 91.354517
iter 30 value 88.072554
iter 40 value 88.066933
iter 50 value 85.456030
iter 60 value 85.432538
iter 70 value 85.092604
iter 80 value 84.359185
iter 90 value 84.356856
iter 100 value 84.355824
final value 84.355824
stopped after 100 iterations
Fitting Repeat 5
# weights: 507
initial value 113.902958
iter 10 value 94.060052
iter 20 value 93.623482
iter 30 value 86.050410
iter 40 value 84.631227
iter 50 value 84.609282
iter 60 value 83.650099
iter 70 value 83.362207
iter 80 value 83.356678
iter 90 value 83.320558
iter 100 value 83.215119
final value 83.215119
stopped after 100 iterations
Fitting Repeat 1
# weights: 103
initial value 106.462224
final value 94.484211
converged
Fitting Repeat 2
# weights: 103
initial value 96.896464
final value 94.484211
converged
Fitting Repeat 3
# weights: 103
initial value 124.936212
final value 94.484211
converged
Fitting Repeat 4
# weights: 103
initial value 98.805631
final value 94.484211
converged
Fitting Repeat 5
# weights: 103
initial value 94.836441
final value 94.484211
converged
Fitting Repeat 1
# weights: 305
initial value 102.211813
final value 94.354396
converged
Fitting Repeat 2
# weights: 305
initial value 110.531904
final value 94.354396
converged
Fitting Repeat 3
# weights: 305
initial value 114.671564
final value 94.484211
converged
Fitting Repeat 4
# weights: 305
initial value 99.372326
final value 94.484211
converged
Fitting Repeat 5
# weights: 305
initial value 108.455814
final value 94.484211
converged
Fitting Repeat 1
# weights: 507
initial value 99.416512
iter 10 value 94.334011
iter 10 value 94.334011
iter 10 value 94.334011
final value 94.334011
converged
Fitting Repeat 2
# weights: 507
initial value 107.860393
iter 10 value 94.334038
final value 94.334011
converged
Fitting Repeat 3
# weights: 507
initial value 102.216316
iter 10 value 89.628492
iter 20 value 88.943841
iter 30 value 88.915591
iter 40 value 88.915431
iter 40 value 88.915431
iter 40 value 88.915431
final value 88.915431
converged
Fitting Repeat 4
# weights: 507
initial value 117.211718
iter 10 value 94.338754
final value 94.338745
converged
Fitting Repeat 5
# weights: 507
initial value 101.226155
final value 94.354396
converged
Fitting Repeat 1
# weights: 103
initial value 96.674446
iter 10 value 94.482477
iter 20 value 86.487441
iter 30 value 84.165978
iter 40 value 83.694046
iter 50 value 83.468756
iter 60 value 83.335018
iter 70 value 83.248994
iter 80 value 83.191444
final value 83.190030
converged
Fitting Repeat 2
# weights: 103
initial value 102.531849
iter 10 value 93.678619
iter 20 value 91.256292
iter 30 value 87.791366
iter 40 value 84.573767
iter 50 value 83.210140
iter 60 value 82.356639
iter 70 value 81.987020
iter 80 value 81.954428
final value 81.954423
converged
Fitting Repeat 3
# weights: 103
initial value 122.585859
iter 10 value 94.288469
iter 20 value 89.720453
iter 30 value 88.543513
iter 40 value 86.775482
iter 50 value 85.690296
iter 60 value 85.420543
iter 70 value 84.947001
iter 80 value 82.722435
iter 90 value 82.328038
iter 100 value 81.546791
final value 81.546791
stopped after 100 iterations
Fitting Repeat 4
# weights: 103
initial value 101.009548
iter 10 value 94.488793
iter 20 value 94.369057
iter 30 value 88.917599
iter 40 value 87.288196
iter 50 value 85.608805
iter 60 value 84.333263
iter 70 value 84.132546
iter 80 value 83.953567
iter 90 value 83.810317
iter 100 value 83.754200
final value 83.754200
stopped after 100 iterations
Fitting Repeat 5
# weights: 103
initial value 113.779962
iter 10 value 94.494773
iter 20 value 94.301143
iter 30 value 93.547423
iter 40 value 87.404814
iter 50 value 83.550122
iter 60 value 82.964773
iter 70 value 82.434481
iter 80 value 82.093786
iter 90 value 82.025025
iter 100 value 81.981178
final value 81.981178
stopped after 100 iterations
Fitting Repeat 1
# weights: 305
initial value 102.952424
iter 10 value 94.754747
iter 20 value 94.497996
iter 30 value 88.645155
iter 40 value 86.572603
iter 50 value 83.960485
iter 60 value 82.358590
iter 70 value 81.972424
iter 80 value 81.495157
iter 90 value 81.217730
iter 100 value 81.151483
final value 81.151483
stopped after 100 iterations
Fitting Repeat 2
# weights: 305
initial value 101.910589
iter 10 value 94.237537
iter 20 value 88.333506
iter 30 value 85.791234
iter 40 value 83.846698
iter 50 value 82.719280
iter 60 value 82.395003
iter 70 value 82.165830
iter 80 value 81.987267
iter 90 value 81.828874
iter 100 value 81.803057
final value 81.803057
stopped after 100 iterations
Fitting Repeat 3
# weights: 305
initial value 104.719961
iter 10 value 96.606363
iter 20 value 94.724064
iter 30 value 94.092894
iter 40 value 86.477142
iter 50 value 84.405804
iter 60 value 83.954275
iter 70 value 83.760372
iter 80 value 83.672476
iter 90 value 83.611632
iter 100 value 82.803861
final value 82.803861
stopped after 100 iterations
Fitting Repeat 4
# weights: 305
initial value 101.708928
iter 10 value 94.391132
iter 20 value 88.201625
iter 30 value 84.527853
iter 40 value 83.889095
iter 50 value 83.443545
iter 60 value 83.343848
iter 70 value 83.251984
iter 80 value 81.988515
iter 90 value 81.186533
iter 100 value 80.928202
final value 80.928202
stopped after 100 iterations
Fitting Repeat 5
# weights: 305
initial value 104.737937
iter 10 value 94.488199
iter 20 value 87.104145
iter 30 value 85.983750
iter 40 value 84.000994
iter 50 value 83.585925
iter 60 value 83.297945
iter 70 value 81.787882
iter 80 value 81.046161
iter 90 value 80.495682
iter 100 value 80.321291
final value 80.321291
stopped after 100 iterations
Fitting Repeat 1
# weights: 507
initial value 109.523587
iter 10 value 91.575819
iter 20 value 86.283278
iter 30 value 85.346728
iter 40 value 84.294517
iter 50 value 83.149400
iter 60 value 82.436954
iter 70 value 81.813540
iter 80 value 81.500310
iter 90 value 81.145028
iter 100 value 80.610881
final value 80.610881
stopped after 100 iterations
Fitting Repeat 2
# weights: 507
initial value 113.160146
iter 10 value 94.270648
iter 20 value 91.314246
iter 30 value 90.275150
iter 40 value 89.907922
iter 50 value 89.843665
iter 60 value 89.787850
iter 70 value 88.617833
iter 80 value 83.018094
iter 90 value 81.786772
iter 100 value 81.321048
final value 81.321048
stopped after 100 iterations
Fitting Repeat 3
# weights: 507
initial value 111.717355
iter 10 value 94.469336
iter 20 value 93.927715
iter 30 value 88.628379
iter 40 value 86.365439
iter 50 value 84.513260
iter 60 value 83.963076
iter 70 value 83.085519
iter 80 value 81.413595
iter 90 value 80.871956
iter 100 value 80.800314
final value 80.800314
stopped after 100 iterations
Fitting Repeat 4
# weights: 507
initial value 108.364041
iter 10 value 94.494858
iter 20 value 92.976574
iter 30 value 89.452754
iter 40 value 83.175753
iter 50 value 82.422225
iter 60 value 81.945600
iter 70 value 81.797058
iter 80 value 81.625593
iter 90 value 81.112346
iter 100 value 80.956805
final value 80.956805
stopped after 100 iterations
Fitting Repeat 5
# weights: 507
initial value 114.650037
iter 10 value 94.518477
iter 20 value 94.214153
iter 30 value 89.159554
iter 40 value 88.686109
iter 50 value 86.212538
iter 60 value 82.981385
iter 70 value 82.188227
iter 80 value 80.895853
iter 90 value 80.335978
iter 100 value 79.985949
final value 79.985949
stopped after 100 iterations
Fitting Repeat 1
# weights: 103
initial value 96.107192
final value 94.485769
converged
Fitting Repeat 2
# weights: 103
initial value 100.041637
final value 94.485835
converged
Fitting Repeat 3
# weights: 103
initial value 98.862277
final value 94.486053
converged
Fitting Repeat 4
# weights: 103
initial value 100.224009
final value 94.485744
converged
Fitting Repeat 5
# weights: 103
initial value 101.327657
final value 94.485934
converged
Fitting Repeat 1
# weights: 305
initial value 97.982451
iter 10 value 94.359301
iter 20 value 94.354725
iter 30 value 94.313050
iter 40 value 88.874570
iter 50 value 88.837155
iter 60 value 87.843584
iter 70 value 87.823485
iter 80 value 87.823361
final value 87.823315
converged
Fitting Repeat 2
# weights: 305
initial value 98.691250
iter 10 value 94.392025
iter 20 value 94.390688
iter 30 value 94.365210
iter 40 value 93.981701
iter 50 value 83.335519
final value 83.335503
converged
Fitting Repeat 3
# weights: 305
initial value 110.373945
iter 10 value 94.453251
iter 20 value 94.449753
iter 30 value 86.543360
final value 85.512642
converged
Fitting Repeat 4
# weights: 305
initial value 104.568351
iter 10 value 94.488321
iter 20 value 86.673995
iter 30 value 85.280390
iter 40 value 85.193268
iter 50 value 85.193157
iter 50 value 85.193156
iter 50 value 85.193156
final value 85.193156
converged
Fitting Repeat 5
# weights: 305
initial value 98.827004
iter 10 value 94.488419
iter 20 value 85.710830
final value 85.513005
converged
Fitting Repeat 1
# weights: 507
initial value 96.042964
iter 10 value 94.362915
iter 20 value 94.355592
iter 30 value 93.848852
iter 40 value 87.135183
iter 50 value 86.817431
iter 60 value 86.413590
iter 70 value 86.403746
iter 80 value 86.397339
iter 90 value 86.350233
iter 100 value 86.025723
final value 86.025723
stopped after 100 iterations
Fitting Repeat 2
# weights: 507
initial value 100.006407
iter 10 value 91.736374
iter 20 value 87.694017
iter 30 value 87.433362
iter 40 value 83.940887
iter 50 value 83.572900
iter 60 value 83.541061
iter 70 value 83.486183
iter 80 value 82.175168
iter 90 value 81.696722
iter 100 value 81.243651
final value 81.243651
stopped after 100 iterations
Fitting Repeat 3
# weights: 507
initial value 105.568266
iter 10 value 94.490390
iter 20 value 94.301869
iter 30 value 85.522216
iter 40 value 85.314527
iter 50 value 84.155553
iter 60 value 83.825028
iter 70 value 83.610470
iter 80 value 83.608757
iter 90 value 83.607066
iter 100 value 83.599553
final value 83.599553
stopped after 100 iterations
Fitting Repeat 4
# weights: 507
initial value 104.729762
iter 10 value 94.491997
iter 20 value 94.479272
iter 30 value 90.280137
iter 40 value 90.247311
iter 50 value 90.116113
iter 60 value 90.109538
iter 70 value 90.093136
iter 80 value 89.843683
iter 90 value 89.839076
iter 90 value 89.839076
iter 90 value 89.839076
final value 89.839076
converged
Fitting Repeat 5
# weights: 507
initial value 107.969191
iter 10 value 94.355574
iter 20 value 94.352323
iter 30 value 94.321300
iter 40 value 94.317592
iter 50 value 94.317454
iter 60 value 88.828920
iter 70 value 86.773749
iter 80 value 86.760376
final value 86.760346
converged
Fitting Repeat 1
# weights: 103
initial value 98.392285
final value 94.484211
converged
Fitting Repeat 2
# weights: 103
initial value 103.402729
final value 94.484211
converged
Fitting Repeat 3
# weights: 103
initial value 99.455099
final value 94.484211
converged
Fitting Repeat 4
# weights: 103
initial value 119.923330
final value 94.484211
converged
Fitting Repeat 5
# weights: 103
initial value 96.658853
final value 94.484211
converged
Fitting Repeat 1
# weights: 305
initial value 105.049390
final value 94.484211
converged
Fitting Repeat 2
# weights: 305
initial value 101.762997
final value 94.484211
converged
Fitting Repeat 3
# weights: 305
initial value 97.280488
final value 94.484211
converged
Fitting Repeat 4
# weights: 305
initial value 98.684642
final value 94.354396
converged
Fitting Repeat 5
# weights: 305
initial value 103.420052
final value 94.385583
converged
Fitting Repeat 1
# weights: 507
initial value 108.071692
final value 94.484211
converged
Fitting Repeat 2
# weights: 507
initial value 100.688071
iter 10 value 91.958177
iter 20 value 87.531629
iter 30 value 83.296644
iter 40 value 83.227672
iter 50 value 83.192943
iter 60 value 83.192550
iter 60 value 83.192549
iter 60 value 83.192549
final value 83.192549
converged
Fitting Repeat 3
# weights: 507
initial value 96.592878
final value 94.484211
converged
Fitting Repeat 4
# weights: 507
initial value 115.844875
final value 94.484211
converged
Fitting Repeat 5
# weights: 507
initial value 104.184257
final value 94.354396
converged
Fitting Repeat 1
# weights: 103
initial value 99.990058
iter 10 value 94.492235
iter 20 value 90.363748
iter 30 value 89.255330
iter 40 value 84.657815
iter 50 value 83.555994
iter 60 value 83.212646
iter 70 value 82.945683
iter 80 value 82.788405
iter 90 value 82.697620
final value 82.696472
converged
Fitting Repeat 2
# weights: 103
initial value 99.307679
iter 10 value 94.441110
iter 20 value 89.038477
iter 30 value 87.315507
iter 40 value 86.122892
iter 50 value 84.471745
iter 60 value 84.326036
final value 84.279778
converged
Fitting Repeat 3
# weights: 103
initial value 104.160694
iter 10 value 94.489523
iter 20 value 85.407362
iter 30 value 84.358501
iter 40 value 84.138145
iter 50 value 84.065002
iter 60 value 83.994764
iter 70 value 83.436128
iter 80 value 83.356892
iter 90 value 83.316321
iter 100 value 83.307899
final value 83.307899
stopped after 100 iterations
Fitting Repeat 4
# weights: 103
initial value 96.249800
iter 10 value 93.710446
iter 20 value 90.062831
iter 30 value 86.714362
iter 40 value 84.528096
iter 50 value 84.027305
iter 60 value 83.592991
final value 83.587515
converged
Fitting Repeat 5
# weights: 103
initial value 108.576125
iter 10 value 94.491778
iter 20 value 94.316044
iter 30 value 91.398099
iter 40 value 89.638719
iter 50 value 88.724117
iter 60 value 85.673122
iter 70 value 84.569713
iter 80 value 84.519925
iter 90 value 84.139550
iter 100 value 83.618925
final value 83.618925
stopped after 100 iterations
Fitting Repeat 1
# weights: 305
initial value 122.119063
iter 10 value 94.866941
iter 20 value 94.469747
iter 30 value 92.863765
iter 40 value 85.136647
iter 50 value 82.865885
iter 60 value 81.264088
iter 70 value 80.770978
iter 80 value 80.406189
iter 90 value 80.324459
iter 100 value 80.269312
final value 80.269312
stopped after 100 iterations
Fitting Repeat 2
# weights: 305
initial value 101.753202
iter 10 value 94.465314
iter 20 value 90.938637
iter 30 value 86.826591
iter 40 value 83.166665
iter 50 value 81.673853
iter 60 value 81.064019
iter 70 value 80.778487
iter 80 value 80.694986
iter 90 value 80.467349
iter 100 value 80.205506
final value 80.205506
stopped after 100 iterations
Fitting Repeat 3
# weights: 305
initial value 110.444056
iter 10 value 93.055847
iter 20 value 91.673432
iter 30 value 89.008911
iter 40 value 86.251224
iter 50 value 85.801137
iter 60 value 85.372512
iter 70 value 83.183511
iter 80 value 80.632569
iter 90 value 80.177320
iter 100 value 80.011061
final value 80.011061
stopped after 100 iterations
Fitting Repeat 4
# weights: 305
initial value 116.705682
iter 10 value 94.663206
iter 20 value 94.251781
iter 30 value 93.150492
iter 40 value 88.158968
iter 50 value 82.842689
iter 60 value 80.745553
iter 70 value 80.192221
iter 80 value 80.109089
iter 90 value 79.934909
iter 100 value 79.604763
final value 79.604763
stopped after 100 iterations
Fitting Repeat 5
# weights: 305
initial value 100.171249
iter 10 value 95.564298
iter 20 value 84.269889
iter 30 value 83.495583
iter 40 value 83.378758
iter 50 value 82.744457
iter 60 value 81.431525
iter 70 value 80.600107
iter 80 value 79.674296
iter 90 value 79.596747
iter 100 value 79.558829
final value 79.558829
stopped after 100 iterations
Fitting Repeat 1
# weights: 507
initial value 106.683129
iter 10 value 94.605234
iter 20 value 93.776013
iter 30 value 84.884795
iter 40 value 83.640138
iter 50 value 83.280404
iter 60 value 83.226052
iter 70 value 83.179701
iter 80 value 83.014885
iter 90 value 82.947038
iter 100 value 82.856217
final value 82.856217
stopped after 100 iterations
Fitting Repeat 2
# weights: 507
initial value 112.081307
iter 10 value 95.762356
iter 20 value 95.293670
iter 30 value 94.393571
iter 40 value 86.404907
iter 50 value 83.730808
iter 60 value 83.479048
iter 70 value 83.346300
iter 80 value 83.254601
iter 90 value 82.325015
iter 100 value 81.963290
final value 81.963290
stopped after 100 iterations
Fitting Repeat 3
# weights: 507
initial value 109.253626
iter 10 value 94.471014
iter 20 value 91.879783
iter 30 value 88.600069
iter 40 value 84.787311
iter 50 value 82.226767
iter 60 value 80.726444
iter 70 value 80.125862
iter 80 value 80.041414
iter 90 value 79.926326
iter 100 value 79.881794
final value 79.881794
stopped after 100 iterations
Fitting Repeat 4
# weights: 507
initial value 108.038226
iter 10 value 94.462381
iter 20 value 93.212091
iter 30 value 87.792774
iter 40 value 85.220390
iter 50 value 84.700476
iter 60 value 82.931400
iter 70 value 82.058417
iter 80 value 81.268403
iter 90 value 81.066058
iter 100 value 80.219210
final value 80.219210
stopped after 100 iterations
Fitting Repeat 5
# weights: 507
initial value 129.917387
iter 10 value 92.626226
iter 20 value 86.443001
iter 30 value 84.065978
iter 40 value 83.817519
iter 50 value 83.623945
iter 60 value 83.243217
iter 70 value 82.436536
iter 80 value 81.676547
iter 90 value 81.061960
iter 100 value 80.420875
final value 80.420875
stopped after 100 iterations
Fitting Repeat 1
# weights: 103
initial value 101.912005
final value 94.485836
converged
Fitting Repeat 2
# weights: 103
initial value 96.728399
final value 94.485744
converged
Fitting Repeat 3
# weights: 103
initial value 105.269305
iter 10 value 94.355948
iter 20 value 94.131697
iter 30 value 83.353541
iter 40 value 83.265543
iter 50 value 83.232528
iter 60 value 83.230483
iter 70 value 83.228864
iter 80 value 83.228748
iter 80 value 83.228748
iter 80 value 83.228748
final value 83.228748
converged
Fitting Repeat 4
# weights: 103
initial value 104.539005
iter 10 value 94.054213
final value 94.054193
converged
Fitting Repeat 5
# weights: 103
initial value 107.328974
final value 94.485943
converged
Fitting Repeat 1
# weights: 305
initial value 99.303841
iter 10 value 94.489155
iter 20 value 94.484228
final value 94.484212
converged
Fitting Repeat 2
# weights: 305
initial value 96.289639
iter 10 value 94.359118
iter 20 value 94.354753
iter 30 value 94.043096
final value 94.038295
converged
Fitting Repeat 3
# weights: 305
initial value 96.707966
iter 10 value 94.358923
iter 20 value 94.347060
iter 30 value 93.255727
iter 40 value 90.897322
iter 50 value 89.565186
iter 60 value 89.564926
final value 89.564882
converged
Fitting Repeat 4
# weights: 305
initial value 111.549927
iter 10 value 92.618913
iter 20 value 92.614987
iter 30 value 85.930670
iter 40 value 85.691819
final value 85.593372
converged
Fitting Repeat 5
# weights: 305
initial value 109.894694
iter 10 value 92.292179
iter 20 value 92.282857
iter 30 value 85.054213
iter 40 value 82.694436
final value 82.694377
converged
Fitting Repeat 1
# weights: 507
initial value 97.087944
iter 10 value 94.150003
iter 20 value 89.819157
iter 30 value 86.829515
iter 40 value 86.688140
iter 50 value 86.592988
iter 60 value 86.343710
final value 86.342802
converged
Fitting Repeat 2
# weights: 507
initial value 107.016716
iter 10 value 94.362486
iter 20 value 94.357154
final value 94.356209
converged
Fitting Repeat 3
# weights: 507
initial value 113.344355
iter 10 value 87.411933
iter 20 value 86.142882
iter 30 value 83.258072
iter 40 value 83.058842
iter 50 value 83.057021
iter 60 value 83.052090
iter 70 value 83.045736
iter 80 value 83.045209
iter 90 value 82.873439
iter 100 value 82.569710
final value 82.569710
stopped after 100 iterations
Fitting Repeat 4
# weights: 507
initial value 103.472992
iter 10 value 94.491947
iter 20 value 94.403239
iter 30 value 93.969897
final value 93.969560
converged
Fitting Repeat 5
# weights: 507
initial value 101.438538
iter 10 value 94.339787
iter 20 value 94.060467
iter 30 value 94.052017
final value 94.038489
converged
Fitting Repeat 1
# weights: 103
initial value 95.935804
final value 94.052910
converged
Fitting Repeat 2
# weights: 103
initial value 109.217854
final value 94.052910
converged
Fitting Repeat 3
# weights: 103
initial value 94.348222
final value 94.052910
converged
Fitting Repeat 4
# weights: 103
initial value 104.686034
final value 94.052910
converged
Fitting Repeat 5
# weights: 103
initial value 97.339591
final value 94.052910
converged
Fitting Repeat 1
# weights: 305
initial value 100.171309
iter 10 value 85.361220
iter 20 value 84.751310
iter 30 value 84.654770
final value 84.654717
converged
Fitting Repeat 2
# weights: 305
initial value 102.578774
final value 94.052910
converged
Fitting Repeat 3
# weights: 305
initial value 115.764855
final value 94.011429
converged
Fitting Repeat 4
# weights: 305
initial value 98.291935
final value 94.052910
converged
Fitting Repeat 5
# weights: 305
initial value 110.812045
final value 93.915746
converged
Fitting Repeat 1
# weights: 507
initial value 106.002883
iter 10 value 89.272487
iter 20 value 88.593946
iter 30 value 88.580083
iter 40 value 87.944442
iter 50 value 87.784772
iter 60 value 87.784310
final value 87.784309
converged
Fitting Repeat 2
# weights: 507
initial value 97.461216
iter 10 value 93.836066
iter 10 value 93.836066
iter 10 value 93.836066
final value 93.836066
converged
Fitting Repeat 3
# weights: 507
initial value 106.433900
final value 93.915746
converged
Fitting Repeat 4
# weights: 507
initial value 95.322986
iter 10 value 93.836072
final value 93.836070
converged
Fitting Repeat 5
# weights: 507
initial value 98.558648
final value 94.052910
converged
Fitting Repeat 1
# weights: 103
initial value 105.633255
iter 10 value 93.806018
iter 20 value 89.213718
iter 30 value 89.115865
iter 40 value 88.242984
iter 50 value 87.790593
iter 60 value 86.192764
iter 70 value 86.053900
iter 80 value 86.029154
final value 86.029132
converged
Fitting Repeat 2
# weights: 103
initial value 103.704498
iter 10 value 93.934041
iter 20 value 88.148386
iter 30 value 87.337855
iter 40 value 86.258244
iter 50 value 84.237122
iter 60 value 83.808060
iter 70 value 83.766206
iter 80 value 83.678416
final value 83.674642
converged
Fitting Repeat 3
# weights: 103
initial value 106.722538
iter 10 value 95.019101
iter 20 value 94.061543
iter 30 value 93.995163
iter 40 value 93.695357
iter 50 value 93.680204
iter 60 value 92.333081
iter 70 value 88.999915
iter 80 value 87.448396
iter 90 value 87.363690
iter 100 value 86.713744
final value 86.713744
stopped after 100 iterations
Fitting Repeat 4
# weights: 103
initial value 97.428690
iter 10 value 94.047495
iter 20 value 88.626277
iter 30 value 87.771921
iter 40 value 85.268501
iter 50 value 84.694939
iter 60 value 84.260817
iter 70 value 84.047436
iter 80 value 83.801548
iter 90 value 83.761166
iter 100 value 83.712253
final value 83.712253
stopped after 100 iterations
Fitting Repeat 5
# weights: 103
initial value 99.413378
iter 10 value 93.896961
iter 20 value 90.927954
iter 30 value 88.862150
iter 40 value 85.079056
iter 50 value 84.512216
iter 60 value 84.024127
iter 70 value 83.805160
iter 80 value 83.674827
final value 83.674642
converged
Fitting Repeat 1
# weights: 305
initial value 112.072459
iter 10 value 94.109781
iter 20 value 90.454416
iter 30 value 88.572899
iter 40 value 88.085900
iter 50 value 87.841669
iter 60 value 87.696865
iter 70 value 87.468910
iter 80 value 85.065544
iter 90 value 84.336812
iter 100 value 84.137799
final value 84.137799
stopped after 100 iterations
Fitting Repeat 2
# weights: 305
initial value 105.134176
iter 10 value 95.547494
iter 20 value 92.940072
iter 30 value 89.903236
iter 40 value 86.303746
iter 50 value 85.065776
iter 60 value 84.030482
iter 70 value 83.942944
iter 80 value 83.807053
iter 90 value 83.791334
iter 100 value 83.782367
final value 83.782367
stopped after 100 iterations
Fitting Repeat 3
# weights: 305
initial value 105.134143
iter 10 value 94.096939
iter 20 value 93.970794
iter 30 value 93.649101
iter 40 value 89.076770
iter 50 value 87.714806
iter 60 value 86.823912
iter 70 value 85.501090
iter 80 value 84.788475
iter 90 value 84.392359
iter 100 value 83.103835
final value 83.103835
stopped after 100 iterations
Fitting Repeat 4
# weights: 305
initial value 101.861244
iter 10 value 94.005084
iter 20 value 88.416473
iter 30 value 87.804993
iter 40 value 87.609314
iter 50 value 84.832465
iter 60 value 83.894242
iter 70 value 83.525204
iter 80 value 83.486893
iter 90 value 83.343229
iter 100 value 83.033316
final value 83.033316
stopped after 100 iterations
Fitting Repeat 5
# weights: 305
initial value 111.209190
iter 10 value 93.958910
iter 20 value 89.195709
iter 30 value 85.736637
iter 40 value 85.481082
iter 50 value 85.395187
iter 60 value 84.130682
iter 70 value 83.468237
iter 80 value 83.341642
iter 90 value 83.324043
iter 100 value 83.318330
final value 83.318330
stopped after 100 iterations
Fitting Repeat 1
# weights: 507
initial value 109.182619
iter 10 value 94.230076
iter 20 value 88.464654
iter 30 value 87.739637
iter 40 value 86.237930
iter 50 value 83.750655
iter 60 value 83.424544
iter 70 value 83.230266
iter 80 value 82.833467
iter 90 value 82.681688
iter 100 value 82.661114
final value 82.661114
stopped after 100 iterations
Fitting Repeat 2
# weights: 507
initial value 119.582612
iter 10 value 94.073875
iter 20 value 91.875039
iter 30 value 89.828005
iter 40 value 87.989159
iter 50 value 86.936199
iter 60 value 83.950935
iter 70 value 83.202809
iter 80 value 82.814711
iter 90 value 82.661283
iter 100 value 82.518809
final value 82.518809
stopped after 100 iterations
Fitting Repeat 3
# weights: 507
initial value 114.989717
iter 10 value 94.153612
iter 20 value 86.189073
iter 30 value 84.753308
iter 40 value 83.282334
iter 50 value 82.770347
iter 60 value 82.531704
iter 70 value 82.270771
iter 80 value 82.165565
iter 90 value 82.153065
iter 100 value 82.085848
final value 82.085848
stopped after 100 iterations
Fitting Repeat 4
# weights: 507
initial value 103.071379
iter 10 value 94.026949
iter 20 value 87.339541
iter 30 value 86.148944
iter 40 value 85.551525
iter 50 value 84.200578
iter 60 value 83.917800
iter 70 value 83.877224
iter 80 value 83.852889
iter 90 value 83.812492
iter 100 value 83.178453
final value 83.178453
stopped after 100 iterations
Fitting Repeat 5
# weights: 507
initial value 106.224554
iter 10 value 94.113496
iter 20 value 90.389511
iter 30 value 88.432778
iter 40 value 85.873961
iter 50 value 85.167212
iter 60 value 83.933383
iter 70 value 83.519947
iter 80 value 83.071291
iter 90 value 82.774932
iter 100 value 82.694025
final value 82.694025
stopped after 100 iterations
Fitting Repeat 1
# weights: 103
initial value 96.100176
final value 94.054510
converged
Fitting Repeat 2
# weights: 103
initial value 94.294019
final value 94.054309
converged
Fitting Repeat 3
# weights: 103
initial value 101.179000
iter 10 value 94.054412
iter 20 value 94.052966
final value 94.052918
converged
Fitting Repeat 4
# weights: 103
initial value 95.873289
final value 94.054582
converged
Fitting Repeat 5
# weights: 103
initial value 99.353651
final value 94.054600
converged
Fitting Repeat 1
# weights: 305
initial value 127.139570
iter 10 value 94.057538
iter 20 value 93.953828
iter 30 value 90.366960
iter 40 value 89.832988
iter 50 value 89.776372
iter 60 value 85.866678
iter 70 value 85.241889
iter 80 value 85.227396
iter 90 value 85.208455
iter 100 value 84.581551
final value 84.581551
stopped after 100 iterations
Fitting Repeat 2
# weights: 305
initial value 94.917510
iter 10 value 93.921127
iter 20 value 93.333591
iter 30 value 87.155530
iter 40 value 87.069645
final value 87.069476
converged
Fitting Repeat 3
# weights: 305
initial value 95.101470
iter 10 value 93.920479
iter 20 value 93.223371
iter 30 value 91.372110
iter 40 value 86.820946
iter 50 value 83.441220
iter 60 value 83.076983
iter 70 value 82.784519
iter 80 value 82.340927
iter 90 value 82.336199
iter 100 value 82.336125
final value 82.336125
stopped after 100 iterations
Fitting Repeat 4
# weights: 305
initial value 96.515723
iter 10 value 94.057435
iter 20 value 94.052951
final value 94.052932
converged
Fitting Repeat 5
# weights: 305
initial value 109.481864
iter 10 value 94.057303
iter 20 value 94.052940
iter 30 value 94.039654
iter 40 value 93.697958
iter 50 value 93.153767
iter 60 value 86.620083
iter 70 value 84.168391
iter 80 value 83.851195
iter 90 value 83.824785
iter 100 value 83.822123
final value 83.822123
stopped after 100 iterations
Fitting Repeat 1
# weights: 507
initial value 101.412331
iter 10 value 94.001549
iter 20 value 93.963053
iter 30 value 92.045959
iter 40 value 90.849024
iter 50 value 84.995909
iter 60 value 84.978710
iter 70 value 84.801878
iter 80 value 84.606356
iter 90 value 84.590605
iter 100 value 84.590518
final value 84.590518
stopped after 100 iterations
Fitting Repeat 2
# weights: 507
initial value 109.414802
iter 10 value 94.049934
iter 20 value 93.682062
iter 30 value 93.634123
iter 40 value 93.634036
final value 93.634033
converged
Fitting Repeat 3
# weights: 507
initial value 97.790838
iter 10 value 93.923451
iter 20 value 93.910542
iter 30 value 92.529343
iter 40 value 86.000687
iter 50 value 84.832266
iter 60 value 84.813201
iter 70 value 84.757784
iter 80 value 84.670053
iter 90 value 83.996604
iter 100 value 82.810755
final value 82.810755
stopped after 100 iterations
Fitting Repeat 4
# weights: 507
initial value 107.356161
iter 10 value 93.924882
iter 20 value 93.917361
iter 30 value 93.739927
iter 40 value 90.839362
iter 50 value 90.838811
iter 60 value 90.794346
iter 70 value 85.771219
iter 80 value 85.760634
iter 90 value 85.595773
iter 100 value 85.539828
final value 85.539828
stopped after 100 iterations
Fitting Repeat 5
# weights: 507
initial value 105.121657
iter 10 value 93.923829
iter 20 value 93.231852
iter 30 value 86.708749
iter 40 value 86.706648
iter 50 value 86.706514
iter 60 value 86.683644
iter 70 value 86.665437
final value 86.665357
converged
Fitting Repeat 1
# weights: 305
initial value 124.331413
iter 10 value 117.939041
iter 20 value 117.624019
iter 30 value 107.012576
iter 40 value 105.779957
iter 50 value 104.801519
iter 60 value 104.145849
iter 70 value 103.642431
iter 80 value 103.166905
iter 90 value 102.838478
iter 100 value 102.630513
final value 102.630513
stopped after 100 iterations
Fitting Repeat 2
# weights: 305
initial value 145.147697
iter 10 value 118.092386
iter 20 value 117.885246
iter 30 value 111.511415
iter 40 value 108.775443
iter 50 value 107.650649
iter 60 value 106.865087
iter 70 value 106.295210
iter 80 value 104.944879
iter 90 value 104.132206
iter 100 value 103.160878
final value 103.160878
stopped after 100 iterations
Fitting Repeat 3
# weights: 305
initial value 125.810111
iter 10 value 117.819786
iter 20 value 108.931729
iter 30 value 106.826109
iter 40 value 106.034934
iter 50 value 105.815977
iter 60 value 105.667904
iter 70 value 105.031738
iter 80 value 104.786283
iter 90 value 104.554735
iter 100 value 103.150191
final value 103.150191
stopped after 100 iterations
Fitting Repeat 4
# weights: 305
initial value 126.696570
iter 10 value 117.547497
iter 20 value 108.790096
iter 30 value 107.916823
iter 40 value 104.065932
iter 50 value 103.005604
iter 60 value 102.629833
iter 70 value 101.947278
iter 80 value 101.712392
iter 90 value 101.088655
iter 100 value 100.799912
final value 100.799912
stopped after 100 iterations
Fitting Repeat 5
# weights: 305
initial value 139.164430
iter 10 value 117.788140
iter 20 value 113.923897
iter 30 value 106.427988
iter 40 value 105.944161
iter 50 value 103.951694
iter 60 value 103.541821
iter 70 value 103.328367
iter 80 value 103.042353
iter 90 value 102.290997
iter 100 value 101.718081
final value 101.718081
stopped after 100 iterations
svmRadial
ranger
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls < cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls < cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls < cases
Setting levels: control = Positive, case = Negative
Setting direction: controls < cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls < cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
RUNIT TEST PROTOCOL -- Wed May 6 20:45:56 2026
***********************************************
Number of test functions: 7
Number of errors: 0
Number of failures: 0
1 Test Suite :
HPiP RUnit Tests - 7 test functions, 0 errors, 0 failures
Number of test functions: 7
Number of errors: 0
Number of failures: 0
Warning messages:
1: `repeats` has no meaning for this resampling method.
2: executing %dopar% sequentially: no parallel backend registered
>
>
>
>
> proc.time()
user system elapsed
19.213 0.569 68.769
HPiP.Rcheck/HPiP-Ex.timings
| name | user | system | elapsed | |
| FSmethod | 16.940 | 0.064 | 17.251 | |
| FreqInteractors | 0.158 | 0.007 | 0.165 | |
| calculateAAC | 0.013 | 0.001 | 0.014 | |
| calculateAutocor | 0.114 | 0.006 | 0.121 | |
| calculateCTDC | 0.026 | 0.001 | 0.027 | |
| calculateCTDD | 0.163 | 0.011 | 0.174 | |
| calculateCTDT | 0.051 | 0.002 | 0.054 | |
| calculateCTriad | 0.154 | 0.006 | 0.160 | |
| calculateDC | 0.030 | 0.002 | 0.033 | |
| calculateF | 0.096 | 0.001 | 0.097 | |
| calculateKSAAP | 0.032 | 0.002 | 0.034 | |
| calculateQD_Sm | 0.647 | 0.027 | 0.674 | |
| calculateTC | 0.572 | 0.053 | 0.625 | |
| calculateTC_Sm | 0.102 | 0.005 | 0.107 | |
| corr_plot | 17.011 | 0.092 | 17.156 | |
| enrichfindP | 0.203 | 0.042 | 10.977 | |
| enrichfind_hp | 0.016 | 0.002 | 1.058 | |
| enrichplot | 0.174 | 0.004 | 0.186 | |
| filter_missing_values | 0.000 | 0.000 | 0.001 | |
| getFASTA | 0.031 | 0.008 | 3.594 | |
| getHPI | 0.000 | 0.000 | 0.001 | |
| get_negativePPI | 0.001 | 0.001 | 0.000 | |
| get_positivePPI | 0 | 0 | 0 | |
| impute_missing_data | 0.000 | 0.000 | 0.001 | |
| plotPPI | 0.029 | 0.001 | 0.030 | |
| pred_ensembel | 6.115 | 0.153 | 5.505 | |
| var_imp | 16.945 | 0.086 | 17.064 | |