Multiple platform build/check report for BioC 3.22 - BUILD results for sesame on nebbiolo2

Hostname	OS	Arch (*)	R version	Installed pkgs
nebbiolo2	Linux (Ubuntu 24.04.3 LTS)	x86_64	4.5.1 Patched (2025-08-23 r88802) -- "Great Square Root"	4903
taishan	Linux (openEuler 24.03 LTS)	aarch64	4.5.0 (2025-04-11) -- "How About a Twenty-Six"	4668
Click on any hostname to see more info about the system (e.g. compilers) () as reported by 'uname -p', except on Windows and Mac OS X*

BUILD results for sesame on nebbiolo2

To the developers/maintainers of the sesame package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/sesame.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results

Summary

Package: sesame

Version: 1.28.0

Command: /home/biocbuild/bbs-3.22-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data --md5 sesame

StartedAt: 2025-11-14 20:11:39 -0500 (Fri, 14 Nov 2025)

EndedAt: 2025-11-14 20:14:58 -0500 (Fri, 14 Nov 2025)

EllapsedTime: 199.2 seconds

RetCode: 1

Status: ERROR

PackageFile: None

PackageFileSize: NA

Command output

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### Running command:
###
###   /home/biocbuild/bbs-3.22-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data --md5 sesame
###
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* checking for file ‘sesame/DESCRIPTION’ ... OK
* preparing ‘sesame’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘QC.Rmd’ using rmarkdown
--- finished re-building ‘QC.Rmd’

--- re-building ‘inferences.Rmd’ using rmarkdown
--- finished re-building ‘inferences.Rmd’

--- re-building ‘modeling.Rmd’ using rmarkdown
--- finished re-building ‘modeling.Rmd’

--- re-building ‘nonhuman.Rmd’ using rmarkdown
--- finished re-building ‘nonhuman.Rmd’

--- re-building ‘sesame.Rmd’ using rmarkdown

Quitting from sesame.Rmd:223-232 [unnamed-chunk-6]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `stopAndCache()`:
! 
| File MSA.address either not found or needs to be cached to be
| used in sesame.
| Please make sure you have updated ExperimentHub and try
| > sesameDataCache("MSA.address")
| or download all data
| > sesameDataCache()
| to retrieve and cache needed sesame data.
---
Backtrace:
    ▆
 1. └─sesameData::sesameData_getManifestGRanges("MSA")
 2.   └─sesameData::sesameDataGet(sprintf("%s.address", platform))
 3.     ├─base::suppressMessages(log <- capture.output(obj <- .sesameDataGet(title)))
 4.     │ └─base::withCallingHandlers(...)
 5.     ├─utils::capture.output(obj <- .sesameDataGet(title))
 6.     │ └─base::withVisible(...elt(i))
 7.     └─sesameData:::.sesameDataGet(title)
 8.       └─sesameData:::stopAndCache(title)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'sesame.Rmd' failed with diagnostics:

| File MSA.address either not found or needs to be cached to be
| used in sesame.
| Please make sure you have updated ExperimentHub and try
| > sesameDataCache("MSA.address")
| or download all data
| > sesameDataCache()
| to retrieve and cache needed sesame data.
--- failed re-building ‘sesame.Rmd’

SUMMARY: processing the following file failed:
  ‘sesame.Rmd’

Error: Vignette re-building failed.
Execution halted