| Back to Multiple platform build/check report for BioC 3.22: simplified long |
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This page was generated on 2025-10-24 12:06 -0400 (Fri, 24 Oct 2025).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 24.04.3 LTS) | x86_64 | 4.5.1 Patched (2025-08-23 r88802) -- "Great Square Root" | 4898 |
| lconway | macOS 12.7.6 Monterey | x86_64 | 4.5.1 Patched (2025-09-10 r88807) -- "Great Square Root" | 4688 |
| kjohnson3 | macOS 13.7.7 Ventura | arm64 | 4.5.1 Patched (2025-09-10 r88807) -- "Great Square Root" | 4634 |
| taishan | Linux (openEuler 24.03 LTS) | aarch64 | 4.5.0 (2025-04-11) -- "How About a Twenty-Six" | 4658 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 1481/2359 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| nullranges 1.15.1 (landing page) Michael Love
| nebbiolo2 | Linux (Ubuntu 24.04.3 LTS) / x86_64 | OK | OK | OK | |||||||||
| lconway | macOS 12.7.6 Monterey / x86_64 | OK | OK | OK | OK | |||||||||
| kjohnson3 | macOS 13.7.7 Ventura / arm64 | OK | OK | OK | OK | |||||||||
| taishan | Linux (openEuler 24.03 LTS) / aarch64 | OK | OK | NA | ||||||||||
|
To the developers/maintainers of the nullranges package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/nullranges.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: nullranges |
| Version: 1.15.1 |
| Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:nullranges.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings nullranges_1.15.1.tar.gz |
| StartedAt: 2025-10-23 21:13:26 -0400 (Thu, 23 Oct 2025) |
| EndedAt: 2025-10-23 21:15:23 -0400 (Thu, 23 Oct 2025) |
| EllapsedTime: 117.6 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: nullranges.Rcheck |
| Warnings: 0 |
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### Running command:
###
### /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:nullranges.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings nullranges_1.15.1.tar.gz
###
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* using log directory ‘/Users/biocbuild/bbs-3.22-bioc/meat/nullranges.Rcheck’
* using R version 4.5.1 Patched (2025-09-10 r88807)
* using platform: aarch64-apple-darwin20
* R was compiled by
Apple clang version 16.0.0 (clang-1600.0.26.6)
GNU Fortran (GCC) 14.2.0
* running under: macOS Ventura 13.7.7
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘nullranges/DESCRIPTION’ ... OK
* this is package ‘nullranges’ version ‘1.15.1’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘nullranges’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
Running ‘testthat.R’
OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: OK
nullranges.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL nullranges ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library’ * installing *source* package ‘nullranges’ ... ** this is package ‘nullranges’ version ‘1.15.1’ ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (nullranges)
nullranges.Rcheck/tests/testthat.Rout
R version 4.5.1 Patched (2025-09-10 r88807) -- "Great Square Root"
Copyright (C) 2025 The R Foundation for Statistical Computing
Platform: aarch64-apple-darwin20
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> library(testthat)
> library(nullranges)
>
> test_check("nullranges")
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 69 ]
>
> proc.time()
user system elapsed
8.528 0.340 8.936
nullranges.Rcheck/nullranges-Ex.timings
| name | user | system | elapsed | |
| MatchedDataFrame | 1.138 | 0.035 | 1.177 | |
| MatchedGInteractions | 0.163 | 0.013 | 0.176 | |
| MatchedGRanges | 0.147 | 0.011 | 0.158 | |
| bootRanges | 0.098 | 0.004 | 0.102 | |
| combnCov | 0.001 | 0.000 | 0.001 | |
| covariates | 0.049 | 0.005 | 0.055 | |
| focal | 0.434 | 0.010 | 0.444 | |
| indices | 0.04 | 0.01 | 0.05 | |
| makeExampleMatchedDataSet | 0.185 | 0.032 | 0.216 | |
| matchRanges | 0.412 | 0.055 | 0.487 | |
| matched | 0.038 | 0.005 | 0.043 | |
| matchedClass | 0.044 | 0.010 | 0.055 | |
| matchedData | 0.038 | 0.007 | 0.044 | |
| matchitToMatched | 0 | 0 | 0 | |
| method | 0.038 | 0.005 | 0.046 | |
| oneRegionSegment | 0.156 | 0.016 | 0.171 | |
| overview | 0.044 | 0.007 | 0.052 | |
| plotCovariate | 1.329 | 0.053 | 1.400 | |
| plotPropensity | 0.690 | 0.023 | 0.713 | |
| plotSegment | 0.742 | 0.026 | 0.775 | |
| pool | 0.078 | 0.006 | 0.092 | |
| reduceSegment | 0.076 | 0.003 | 0.079 | |
| segmentDensity | 0.142 | 0.003 | 0.146 | |
| unmatched | 0.542 | 0.016 | 0.557 | |
| withReplacement | 0.035 | 0.004 | 0.040 | |