| Back to Multiple platform build/check report for BioC 3.22: simplified long | 
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This page was generated on 2025-10-21 12:07 -0400 (Tue, 21 Oct 2025).
| Hostname | OS | Arch (*) | R version | Installed pkgs | 
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 24.04.3 LTS) | x86_64 | 4.5.1 Patched (2025-08-23 r88802) -- "Great Square Root" | 4887 | 
| lconway | macOS 12.7.6 Monterey | x86_64 | 4.5.1 Patched (2025-09-10 r88807) -- "Great Square Root" | 4677 | 
| kjohnson3 | macOS 13.7.7 Ventura | arm64 | 4.5.1 Patched (2025-09-10 r88807) -- "Great Square Root" | 4622 | 
| taishan | Linux (openEuler 24.03 LTS) | aarch64 | 4.5.0 (2025-04-11) -- "How About a Twenty-Six" | 4642 | 
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 1335/2353 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| mobileRNA 1.5.1  (landing page) Katie Jeynes-Cupper 
 | nebbiolo2 | Linux (Ubuntu 24.04.3 LTS) / x86_64 | OK | OK | OK |  | ||||||||
| lconway | macOS 12.7.6 Monterey / x86_64 | OK | OK | OK | OK |  | ||||||||
| kjohnson3 | macOS 13.7.7 Ventura / arm64 | OK | OK | OK | OK |  | ||||||||
| taishan | Linux (openEuler 24.03 LTS) / aarch64 | OK | OK | OK | ||||||||||
| To the developers/maintainers of the mobileRNA package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/mobileRNA.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. - See Martin Grigorov's blog post for how to debug Linux ARM64 related issues on a x86_64 host. | 
| Package: mobileRNA | 
| Version: 1.5.1 | 
| Command: /home/biocbuild/R/R/bin/R CMD check --install=check:mobileRNA.install-out.txt --library=/home/biocbuild/R/R/site-library --no-vignettes --timings mobileRNA_1.5.1.tar.gz | 
| StartedAt: 2025-10-17 11:12:22 -0000 (Fri, 17 Oct 2025) | 
| EndedAt: 2025-10-17 11:18:58 -0000 (Fri, 17 Oct 2025) | 
| EllapsedTime: 396.4 seconds | 
| RetCode: 0 | 
| Status: OK | 
| CheckDir: mobileRNA.Rcheck | 
| Warnings: 0 | 
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### Running command:
###
###   /home/biocbuild/R/R/bin/R CMD check --install=check:mobileRNA.install-out.txt --library=/home/biocbuild/R/R/site-library --no-vignettes --timings mobileRNA_1.5.1.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.22-bioc/meat/mobileRNA.Rcheck’
* using R version 4.5.0 (2025-04-11)
* using platform: aarch64-unknown-linux-gnu
* R was compiled by
    aarch64-unknown-linux-gnu-gcc (GCC) 14.2.0
    GNU Fortran (GCC) 14.2.0
* running under: openEuler 24.03 (LTS)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘mobileRNA/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘mobileRNA’ version ‘1.5.1’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... INFO
Imports includes 24 non-default packages.
Importing from so many packages makes the package vulnerable to any of
them becoming unavailable.  Move as many as possible to Suggests and
use conditionally.
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘mobileRNA’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
                          user system elapsed
RNAdistribution         22.656  0.175  22.901
RNAdicercall            17.151  0.486  17.690
RNAsubset               17.066  0.115  17.232
RNAdifferentialAnalysis  9.817  0.232  10.078
RNAsummary               8.016  0.140   8.173
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: OK
mobileRNA.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/R/R/bin/R CMD INSTALL mobileRNA ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/R/R-4.5.0/site-library’ * installing *source* package ‘mobileRNA’ ... ** this is package ‘mobileRNA’ version ‘1.5.1’ ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (mobileRNA)
mobileRNA.Rcheck/mobileRNA-Ex.timings
| name | user | system | elapsed | |
| RNAattributes | 1.328 | 0.072 | 1.404 | |
| RNAdf2se | 0.292 | 0.008 | 0.301 | |
| RNAdicercall | 17.151 | 0.486 | 17.690 | |
| RNAdifferentialAnalysis | 9.817 | 0.232 | 10.078 | |
| RNAdistribution | 22.656 | 0.175 | 22.901 | |
| RNAfeatures | 1.770 | 0.028 | 1.803 | |
| RNAimport | 0 | 0 | 0 | |
| RNAmergeAnnotations | 0.459 | 0.012 | 0.473 | |
| RNAmergeGenomes | 0.066 | 0.000 | 0.067 | |
| RNAmobile | 0.957 | 0.020 | 0.979 | |
| RNApopulation | 3.408 | 0.040 | 3.458 | |
| RNAreorder | 0.169 | 0.004 | 0.174 | |
| RNAsequences | 2.186 | 0.012 | 2.203 | |
| RNAsubset | 17.066 | 0.115 | 17.232 | |
| RNAsummary | 8.016 | 0.140 | 8.173 | |
| mRNA_data | 0.029 | 0.008 | 0.037 | |
| mapRNA | 0 | 0 | 0 | |
| plotHeatmap | 0.984 | 0.012 | 0.999 | |
| plotRNAfeatures | 1.573 | 0.012 | 1.590 | |
| plotSampleDistance | 3.034 | 0.016 | 3.057 | |
| plotSamplePCA | 3.820 | 0.032 | 3.861 | |
| sRNA_data | 0.145 | 0.004 | 0.149 | |