Multiple platform build/check report for BioC 3.22 - BUILD results for goatea on kjohnson3

Hostname	OS	Arch (*)	R version	Installed pkgs
nebbiolo2	Linux (Ubuntu 24.04.3 LTS)	x86_64	4.5.1 Patched (2025-08-23 r88802) -- "Great Square Root"	4898
lconway	macOS 12.7.6 Monterey	x86_64	4.5.1 Patched (2025-09-10 r88807) -- "Great Square Root"	4688
kjohnson3	macOS 13.7.7 Ventura	arm64	4.5.1 Patched (2025-09-10 r88807) -- "Great Square Root"	4634
taishan	Linux (openEuler 24.03 LTS)	aarch64	4.5.0 (2025-04-11) -- "How About a Twenty-Six"	4658
Click on any hostname to see more info about the system (e.g. compilers) () as reported by 'uname -p', except on Windows and Mac OS X*

BUILD results for goatea on kjohnson3

To the developers/maintainers of the goatea package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/goatea.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results

Summary

Package: goatea

Version: 0.99.9

Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data goatea

StartedAt: 2025-10-23 16:36:41 -0400 (Thu, 23 Oct 2025)

EndedAt: 2025-10-23 16:37:35 -0400 (Thu, 23 Oct 2025)

EllapsedTime: 53.6 seconds

RetCode: 1

Status: ERROR

PackageFile: None

PackageFileSize: NA

Command output

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### Running command:
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###   /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data goatea
###
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* checking for file ‘goatea/DESCRIPTION’ ... OK
* preparing ‘goatea’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘goatea.Rmd’ using rmarkdown
trying URL 'https://github.com/ftwkoopmans/goat/raw/main/analyses/goat_manuscript_datasets.rda'
Content type 'application/octet-stream' length 1074180 bytes (1.0 MB)
==================================================
downloaded 1.0 MB

2025-10-23 16:37:28.099 R[68052:531428692] XType: Using static font registry.
Warning: ggrepel: 2228 unlabeled data points (too many overlaps). Consider increasing max.overlaps

Quitting from goatea.Rmd:321-331 [tree plot]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
NULL
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'goatea.Rmd' failed with diagnostics:
Can't convert a call to a string.
--- failed re-building ‘goatea.Rmd’

SUMMARY: processing the following file failed:
  ‘goatea.Rmd’

Error: Vignette re-building failed.
Execution halted