Back to Multiple platform build/check report for BioC 3.22:   simplified   long
ABCDEF[G]HIJKLMNOPQRSTUVWXYZ

This page was generated on 2025-11-15 11:58 -0500 (Sat, 15 Nov 2025).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 24.04.3 LTS)x86_644.5.1 Patched (2025-08-23 r88802) -- "Great Square Root" 4903
taishanLinux (openEuler 24.03 LTS)aarch644.5.0 (2025-04-11) -- "How About a Twenty-Six" 4668
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 804/2361HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
gDRimport 1.8.0  (landing page)
Arkadiusz Gladki
Snapshot Date: 2025-11-14 13:45 -0500 (Fri, 14 Nov 2025)
git_url: https://git.bioconductor.org/packages/gDRimport
git_branch: RELEASE_3_22
git_last_commit: 45e2207
git_last_commit_date: 2025-10-29 11:23:40 -0500 (Wed, 29 Oct 2025)
nebbiolo2Linux (Ubuntu 24.04.3 LTS) / x86_64  OK    ERROR  skipped
taishanLinux (openEuler 24.03 LTS) / aarch64  OK    OK    OK  

BUILD results for gDRimport on nebbiolo2

To the developers/maintainers of the gDRimport package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/gDRimport.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: gDRimport
Version: 1.8.0
Command: /home/biocbuild/bbs-3.22-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data --md5 gDRimport
StartedAt: 2025-11-14 17:47:57 -0500 (Fri, 14 Nov 2025)
EndedAt: 2025-11-14 17:48:41 -0500 (Fri, 14 Nov 2025)
EllapsedTime: 44.0 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/bbs-3.22-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data --md5 gDRimport
###
##############################################################################
##############################################################################


* checking for file ‘gDRimport/DESCRIPTION’ ... OK
* preparing ‘gDRimport’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘ConvertingMAEtoPharmacoSet.Rmd’ using rmarkdown
--- finished re-building ‘ConvertingMAEtoPharmacoSet.Rmd’

--- re-building ‘ConvertingPharmacoSetToGDR.Rmd’ using rmarkdown

Quitting from ConvertingPharmacoSetToGDR.Rmd:46-59 [unnamed-chunk-3]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
NULL
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'ConvertingPharmacoSetToGDR.Rmd' failed with diagnostics:
`with_mock()` was deprecated in testthat 3.2.0 and is now defunct.
ℹ Please use `with_mocked_bindings()` instead.
--- failed re-building ‘ConvertingPharmacoSetToGDR.Rmd’

--- re-building ‘gDRimport.Rmd’ using rmarkdown
--- finished re-building ‘gDRimport.Rmd’

SUMMARY: processing the following file failed:
  ‘ConvertingPharmacoSetToGDR.Rmd’

Error: Vignette re-building failed.
Execution halted