| Back to Multiple platform build/check report for BioC 3.22: simplified long |
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This page was generated on 2025-10-24 12:06 -0400 (Fri, 24 Oct 2025).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 24.04.3 LTS) | x86_64 | 4.5.1 Patched (2025-08-23 r88802) -- "Great Square Root" | 4898 |
| lconway | macOS 12.7.6 Monterey | x86_64 | 4.5.1 Patched (2025-09-10 r88807) -- "Great Square Root" | 4688 |
| kjohnson3 | macOS 13.7.7 Ventura | arm64 | 4.5.1 Patched (2025-09-10 r88807) -- "Great Square Root" | 4634 |
| taishan | Linux (openEuler 24.03 LTS) | aarch64 | 4.5.0 (2025-04-11) -- "How About a Twenty-Six" | 4658 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 498/2359 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| cyanoFilter 1.17.0 (landing page) Oluwafemi Olusoji
| nebbiolo2 | Linux (Ubuntu 24.04.3 LTS) / x86_64 | OK | OK | OK | |||||||||
| lconway | macOS 12.7.6 Monterey / x86_64 | OK | OK | OK | OK | |||||||||
| kjohnson3 | macOS 13.7.7 Ventura / arm64 | OK | OK | OK | OK | |||||||||
| taishan | Linux (openEuler 24.03 LTS) / aarch64 | OK | OK | OK | ||||||||||
|
To the developers/maintainers of the cyanoFilter package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/cyanoFilter.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: cyanoFilter |
| Version: 1.17.0 |
| Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:cyanoFilter.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings cyanoFilter_1.17.0.tar.gz |
| StartedAt: 2025-10-23 19:20:59 -0400 (Thu, 23 Oct 2025) |
| EndedAt: 2025-10-23 19:21:39 -0400 (Thu, 23 Oct 2025) |
| EllapsedTime: 40.5 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: cyanoFilter.Rcheck |
| Warnings: 0 |
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### Running command:
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### /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:cyanoFilter.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings cyanoFilter_1.17.0.tar.gz
###
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* using log directory ‘/Users/biocbuild/bbs-3.22-bioc/meat/cyanoFilter.Rcheck’
* using R version 4.5.1 Patched (2025-09-10 r88807)
* using platform: aarch64-apple-darwin20
* R was compiled by
Apple clang version 16.0.0 (clang-1600.0.26.6)
GNU Fortran (GCC) 14.2.0
* running under: macOS Ventura 13.7.7
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘cyanoFilter/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘cyanoFilter’ version ‘1.17.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘cyanoFilter’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: OK
cyanoFilter.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL cyanoFilter ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library’ * installing *source* package ‘cyanoFilter’ ... ** this is package ‘cyanoFilter’ version ‘1.17.0’ ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (cyanoFilter)
cyanoFilter.Rcheck/cyanoFilter-Ex.timings
| name | user | system | elapsed | |
| MarginEvents | 0.275 | 0.020 | 0.296 | |
| PhytoFilter | 0.198 | 0.014 | 0.218 | |
| PhytopFilter | 0.223 | 0.016 | 0.239 | |
| accTest | 0.125 | 0.009 | 0.135 | |
| accuracy | 0.121 | 0.007 | 0.128 | |
| cellmargin | 0.108 | 0.007 | 0.116 | |
| clusterExtract | 0.260 | 0.010 | 0.271 | |
| clusterExtractp | 0.345 | 0.018 | 0.364 | |
| debrisNc | 0.108 | 0.013 | 0.123 | |
| fullFlowframe-MarginEvents-method | 0.100 | 0.006 | 0.107 | |
| fullFlowframe-PhytopFilter-method | 0.187 | 0.011 | 0.198 | |
| fullFlowframe | 0.106 | 0.018 | 0.122 | |
| gateFunc | 3.848 | 0.215 | 3.247 | |
| ggpairsDens | 1.670 | 0.057 | 1.734 | |
| ggplotDens | 0.251 | 0.014 | 0.267 | |
| ggplotDens2 | 0.340 | 0.014 | 0.355 | |
| goodfcs | 0.019 | 0.003 | 0.022 | |
| is.DebrisFilter | 0 | 0 | 0 | |
| is.MarginEvents | 0 | 0 | 0 | |
| is.PhytopFilter | 0 | 0 | 0 | |
| is.flowFrame | 0.001 | 0.000 | 0.000 | |
| is.flowSet | 0 | 0 | 0 | |
| lnTrans | 0.076 | 0.005 | 0.080 | |
| newFlowframe | 0.079 | 0.017 | 0.097 | |
| nona | 0.036 | 0.003 | 0.038 | |
| noneg | 0.062 | 0.005 | 0.067 | |
| oneDgate | 0.080 | 0.019 | 0.098 | |
| pairsPlot | 0.847 | 0.071 | 0.921 | |
| pigmentGate | 0.092 | 0.015 | 0.109 | |
| reducedFlowframe-MarginEvents-method | 0.101 | 0.008 | 0.109 | |
| reducedFlowframe | 0.096 | 0.007 | 0.103 | |
| retain | 0.007 | 0.001 | 0.008 | |
| rowNumbers | 0.073 | 0.016 | 0.092 | |
| summaries-DebrisFilter-method | 0.100 | 0.007 | 0.107 | |
| summaries-MarginEvents-method | 0.097 | 0.009 | 0.107 | |
| summaries-PhytopFilter-method | 0.186 | 0.014 | 0.204 | |
| summaries | 0.102 | 0.007 | 0.109 | |