Hin-Tak Leung
| Snapshot Date: 2025-10-23 14:17 -0400 (Thu, 23 Oct 2025) |
| git_url: https://git.bioconductor.org/packages/chopsticks |
| git_branch: devel |
| git_last_commit: 916b2f4 |
| git_last_commit_date: 2025-04-15 10:01:51 -0400 (Tue, 15 Apr 2025) |
| Back to Multiple platform build/check report for BioC 3.22: simplified long |
|
This page was generated on 2025-10-24 12:06 -0400 (Fri, 24 Oct 2025).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 24.04.3 LTS) | x86_64 | 4.5.1 Patched (2025-08-23 r88802) -- "Great Square Root" | 4898 |
| lconway | macOS 12.7.6 Monterey | x86_64 | 4.5.1 Patched (2025-09-10 r88807) -- "Great Square Root" | 4688 |
| kjohnson3 | macOS 13.7.7 Ventura | arm64 | 4.5.1 Patched (2025-09-10 r88807) -- "Great Square Root" | 4634 |
| taishan | Linux (openEuler 24.03 LTS) | aarch64 | 4.5.0 (2025-04-11) -- "How About a Twenty-Six" | 4658 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 357/2359 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| chopsticks 1.75.0 (landing page) Hin-Tak Leung
| nebbiolo2 | Linux (Ubuntu 24.04.3 LTS) / x86_64 | OK | OK | WARNINGS | | ||||||||
| lconway | macOS 12.7.6 Monterey / x86_64 | OK | OK | WARNINGS | OK | | ||||||||
| kjohnson3 | macOS 13.7.7 Ventura / arm64 | ERROR | ERROR | skipped | skipped | |||||||||
| taishan | Linux (openEuler 24.03 LTS) / aarch64 | OK | OK | WARNINGS | ||||||||||
|
To the developers/maintainers of the chopsticks package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/chopsticks.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: chopsticks |
| Version: 1.75.0 |
| Command: /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL chopsticks |
| StartedAt: 2025-10-23 15:03:12 -0400 (Thu, 23 Oct 2025) |
| EndedAt: 2025-10-23 15:03:18 -0400 (Thu, 23 Oct 2025) |
| EllapsedTime: 5.6 seconds |
| RetCode: 1 |
| Status: ERROR |
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### Running command:
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### /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL chopsticks
###
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* installing to library ‘/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library’
* installing *source* package ‘chopsticks’ ...
** this is package ‘chopsticks’ version ‘1.75.0’
** using staged installation
** libs
using C compiler: ‘Apple clang version 15.0.0 (clang-1500.1.0.2.5)’
using SDK: ‘MacOSX11.3.1.sdk’
clang -arch arm64 -std=gnu2x -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c adler32.c -o adler32.o
adler32.c:57:23: error: unknown type name 'adler'
uLong ZEXPORT adler32(adler, buf, len)
^
adler32.c:57:30: error: unknown type name 'buf'
uLong ZEXPORT adler32(adler, buf, len)
^
adler32.c:57:35: error: unknown type name 'len'
uLong ZEXPORT adler32(adler, buf, len)
^
adler32.c:57:39: error: expected ';' after top level declarator
uLong ZEXPORT adler32(adler, buf, len)
^
;
adler32.c:61:1: error: expected identifier or '('
{
^
adler32.c:128:31: error: unknown type name 'adler1'
uLong ZEXPORT adler32_combine(adler1, adler2, len2)
^
adler32.c:128:39: error: unknown type name 'adler2'
uLong ZEXPORT adler32_combine(adler1, adler2, len2)
^
adler32.c:128:47: error: unknown type name 'len2'
uLong ZEXPORT adler32_combine(adler1, adler2, len2)
^
adler32.c:128:52: error: expected ';' after top level declarator
uLong ZEXPORT adler32_combine(adler1, adler2, len2)
^
;
adler32.c:132:1: error: expected identifier or '('
{
^
10 errors generated.
make: *** [adler32.o] Error 1
ERROR: compilation failed for package ‘chopsticks’
* removing ‘/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/chopsticks’