Multiple platform build/check report for BioC 3.22 - INSTALL results for SpectriPy on kjohnson1

Hostname	OS	Arch (*)	R version	Installed pkgs
nebbiolo2	Linux (Ubuntu 24.04.3 LTS)	x86_64	4.5.2 (2025-10-31) -- "[Not] Part in a Rumble"	4615
merida1	macOS 12.7.6 Monterey	x86_64	4.5.2 Patched (2025-11-05 r88990) -- "[Not] Part in a Rumble"	4610
kjohnson1	macOS 13.7.5 Ventura	arm64	4.5.2 Patched (2025-11-04 r88984) -- "[Not] Part in a Rumble"	4598
taishan	Linux (openEuler 24.03 LTS)	aarch64	4.5.0 (2025-04-11) -- "How About a Twenty-Six"	4668
Click on any hostname to see more info about the system (e.g. compilers) () as reported by 'uname -p', except on Windows and Mac OS X*

INSTALL results for SpectriPy on kjohnson1

To the developers/maintainers of the SpectriPy package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/SpectriPy.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results

Summary

Package: SpectriPy

Version: 1.0.0

Command: /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL SpectriPy

StartedAt: 2025-11-17 17:23:44 -0500 (Mon, 17 Nov 2025)

EndedAt: 2025-11-17 17:23:49 -0500 (Mon, 17 Nov 2025)

EllapsedTime: 5.3 seconds

RetCode: 1

Status: ERROR

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL SpectriPy
###
##############################################################################
##############################################################################


* installing to library ‘/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library’
* installing *source* package ‘SpectriPy’ ...
** this is package ‘SpectriPy’ version ‘1.0.0’
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
python:         /usr/bin/python3
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pythonhome:     /Library/Developer/CommandLineTools/Library/Frameworks/Python3.framework/Versions/3.9:/Library/Developer/CommandLineTools/Library/Frameworks/Python3.framework/Versions/3.9
version:        3.9.6 (default, Aug 11 2023, 19:44:49)  [Clang 15.0.0 (clang-1500.0.40.1)]
numpy:          /Library/Python/3.9/site-packages/numpy
numpy_version:  1.24.3

NOTE: Python version was forced by RETICULATE_PYTHON
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Error: package or namespace load failed for ‘SpectriPy’:
 .onLoad failed in loadNamespace() for 'SpectriPy', details:
  call: value[[3L]](cond)
  error: Failed to initialize Python environment and libraries!
Original message: No module named 'matchms'
Python configuration:

Environmental variables:
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Error: loading failed
Execution halted
ERROR: loading failed
* removing ‘/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/SpectriPy’