Multiple platform build/check report for BioC 3.22 - BUILD results for SVP on nebbiolo2

Hostname	OS	Arch (*)	R version	Installed pkgs
nebbiolo2	Linux (Ubuntu 24.04.3 LTS)	x86_64	4.5.1 Patched (2025-08-23 r88802) -- "Great Square Root"	4901
lconway	macOS 12.7.6 Monterey	x86_64	4.5.1 Patched (2025-09-10 r88807) -- "Great Square Root"	4691
kjohnson3	macOS 13.7.7 Ventura	arm64	4.5.1 Patched (2025-09-10 r88807) -- "Great Square Root"	4637
taishan	Linux (openEuler 24.03 LTS)	aarch64	4.5.0 (2025-04-11) -- "How About a Twenty-Six"	4658
Click on any hostname to see more info about the system (e.g. compilers) () as reported by 'uname -p', except on Windows and Mac OS X*

BUILD results for SVP on nebbiolo2

To the developers/maintainers of the SVP package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/SVP.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results

Summary

Package: SVP

Version: 1.1.1

Command: /home/biocbuild/bbs-3.22-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data --md5 SVP

StartedAt: 2025-10-24 20:33:11 -0400 (Fri, 24 Oct 2025)

EndedAt: 2025-10-24 20:37:36 -0400 (Fri, 24 Oct 2025)

EllapsedTime: 264.5 seconds

RetCode: 0

Status: OK

PackageFile: SVP_1.1.1.tar.gz

PackageFileSize: 4.196 MiB

Command output

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### Running command:
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###   /home/biocbuild/bbs-3.22-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data --md5 SVP
###
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* checking for file ‘SVP/DESCRIPTION’ ... OK
* preparing ‘SVP’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to build vignettes
* creating vignettes ... OK
* cleaning src
* checking for LF line-endings in source and make files and shell scripts
* checking for empty or unneeded directories
* looking to see if a ‘data/datalist’ file should be added
  NB: this package now depends on R (>= 4.1.0)
  WARNING: Added dependency on R >= 4.1.0 because package code uses the
  pipe |> or function shorthand \(...) syntax added in R 4.1.0.
  File(s) using such syntax:
    ‘LISAResult.Rd’ ‘LISAsce-method.Rd’ ‘SVP-accessors.Rd’
    ‘SVPExperiment.Rd’ ‘as_tbl_df.Rd’ ‘bivar-internal.R’
    ‘cal_lisa_f1-method.Rd’ ‘cluster.assign-method.Rd’ ‘fast_cor.Rd’
    ‘fscoreDfs.Rd’ ‘internals.R’ ‘lisa-internal.R’ ‘methods-accessor.R’
    ‘methods-detect.marker.R’ ‘methods-encode.R’ ‘methods-lisaRes.R’
    ‘methods-mca.R’ ‘methods-plot.R’ ‘plot_heatmap_globalbv.Rd’
    ‘pred.cell.signature-method.Rd’ ‘runCORR-method.Rd’
    ‘runDetectMarker-method.Rd’ ‘runDetectSVG-method.Rd’
    ‘runGLOBALBV-method.Rd’ ‘runKldSVG-method.Rd’ ‘runLISA-method.Rd’
    ‘runLOCALBV-method.Rd’ ‘runMCA-method.Rd’ ‘runSGSA-method.Rd’
    ‘runWKDE-method.Rd’ ‘svDfs.Rd’ ‘svp-internals.R’
* adding MD5 file
* building ‘SVP_1.1.1.tar.gz’