##############################################################################
##############################################################################
###
### Running command:
###
###   rm -rf Repitools.buildbin-libdir && mkdir Repitools.buildbin-libdir && F:\biocbuild\bbs-3.22-bioc\R\bin\R.exe CMD INSTALL --build --library=Repitools.buildbin-libdir Repitools_1.55.0.tar.gz
###
##############################################################################
##############################################################################


* installing *source* package 'Repitools' ...
** this is package 'Repitools' version '1.55.0'
** using staged installation
** libs
using C compiler: 'gcc.exe (GCC) 14.2.0'
using C++ compiler: 'G__~1.EXE (GCC) 14.2.0'
gcc  -I"F:/biocbuild/bbs-3.22-bioc/R/include" -DNDEBUG     -I"C:/rtools45/x86_64-w64-mingw32.static.posix/include"   -D R_NO_REMAP -I.    -O2 -Wall -std=gnu2x  -mfpmath=sse -msse2 -mstackrealign   -c const.c -o const.o
gcc  -I"F:/biocbuild/bbs-3.22-bioc/R/include" -DNDEBUG     -I"C:/rtools45/x86_64-w64-mingw32.static.posix/include"   -D R_NO_REMAP -I.    -O2 -Wall -std=gnu2x  -mfpmath=sse -msse2 -mstackrealign   -c hyp2f1.c -o hyp2f1.o
In file included from hyp2f1.c:81:
./mconf.h:100:9: warning: "DOMAIN" redefined
  100 | #define DOMAIN          1       /* argument domain error */
      |         ^~~~~~
In file included from F:/biocbuild/bbs-3.22-bioc/R/include/Rmath.h:43,
                 from hyp2f1.c:80:
C:/rtools45/x86_64-w64-mingw32.static.posix/include/math.h:29:9: note: this is the location of the previous definition
   29 | #define DOMAIN          _DOMAIN
      |         ^~~~~~
./mconf.h:101:9: warning: "SING" redefined
  101 | #define SING            2       /* argument singularity */
      |         ^~~~
C:/rtools45/x86_64-w64-mingw32.static.posix/include/math.h:30:9: note: this is the location of the previous definition
   30 | #define SING            _SING
      |         ^~~~
./mconf.h:102:9: warning: "OVERFLOW" redefined
  102 | #define OVERFLOW        3       /* overflow range error */
      |         ^~~~~~~~
C:/rtools45/x86_64-w64-mingw32.static.posix/include/math.h:31:9: note: this is the location of the previous definition
   31 | #define OVERFLOW        _OVERFLOW
      |         ^~~~~~~~
./mconf.h:103:9: warning: "UNDERFLOW" redefined
  103 | #define UNDERFLOW       4       /* underflow range error */
      |         ^~~~~~~~~
C:/rtools45/x86_64-w64-mingw32.static.posix/include/math.h:32:9: note: this is the location of the previous definition
   32 | #define UNDERFLOW       _UNDERFLOW
      |         ^~~~~~~~~
./mconf.h:104:9: warning: "TLOSS" redefined
  104 | #define TLOSS           5       /* total loss of precision */
      |         ^~~~~
C:/rtools45/x86_64-w64-mingw32.static.posix/include/math.h:33:9: note: this is the location of the previous definition
   33 | #define TLOSS           _TLOSS
      |         ^~~~~
./mconf.h:105:9: warning: "PLOSS" redefined
  105 | #define PLOSS           6       /* partial loss of precision */
      |         ^~~~~
C:/rtools45/x86_64-w64-mingw32.static.posix/include/math.h:34:9: note: this is the location of the previous definition
   34 | #define PLOSS           _PLOSS
      |         ^~~~~
hyp2f1.c: In function 'hyp2f1':
hyp2f1.c:126:8: warning: old-style function definition [-Wold-style-definition]
  126 | double hyp2f1( a, b, c, x )
      |        ^~~~~~
hyp2f1.c: In function 'hyt2f1':
hyp2f1.c:294:9: warning: old-style function definition [-Wold-style-definition]
  294 |  double hyt2f1( a, b, c, x, loss )
      |         ^~~~~~
hyp2f1.c: In function 'hys2f1':
hyp2f1.c:438:9: warning: old-style function definition [-Wold-style-definition]
  438 |  double hys2f1( a, b, c, x, loss )
      |         ^~~~~~
g++ -std=gnu++17  -I"F:/biocbuild/bbs-3.22-bioc/R/include" -DNDEBUG     -I"C:/rtools45/x86_64-w64-mingw32.static.posix/include"      -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign    -c mmeansd.cpp -o mmeansd.o
mmeansd.cpp: In function 'SEXPREC* moving_mean_sd(SEXP, SEXP, SEXP)':
mmeansd.cpp:33:24: warning: variable 'is' set but not used [-Wunused-but-set-variable]
   33 |     int * x, nval, hs, is, i;
      |                        ^~
gcc  -I"F:/biocbuild/bbs-3.22-bioc/R/include" -DNDEBUG     -I"C:/rtools45/x86_64-w64-mingw32.static.posix/include"   -D R_NO_REMAP -I.    -O2 -Wall -std=gnu2x  -mfpmath=sse -msse2 -mstackrealign   -c mtherr.c -o mtherr.o
In file included from mtherr.c:58:
./mconf.h:100:9: warning: "DOMAIN" redefined
  100 | #define DOMAIN          1       /* argument domain error */
      |         ^~~~~~
In file included from F:/biocbuild/bbs-3.22-bioc/R/include/R.h:45,
                 from mtherr.c:56:
C:/rtools45/x86_64-w64-mingw32.static.posix/include/math.h:29:9: note: this is the location of the previous definition
   29 | #define DOMAIN          _DOMAIN
      |         ^~~~~~
./mconf.h:101:9: warning: "SING" redefined
  101 | #define SING            2       /* argument singularity */
      |         ^~~~
C:/rtools45/x86_64-w64-mingw32.static.posix/include/math.h:30:9: note: this is the location of the previous definition
   30 | #define SING            _SING
      |         ^~~~
./mconf.h:102:9: warning: "OVERFLOW" redefined
  102 | #define OVERFLOW        3       /* overflow range error */
      |         ^~~~~~~~
C:/rtools45/x86_64-w64-mingw32.static.posix/include/math.h:31:9: note: this is the location of the previous definition
   31 | #define OVERFLOW        _OVERFLOW
      |         ^~~~~~~~
./mconf.h:103:9: warning: "UNDERFLOW" redefined
  103 | #define UNDERFLOW       4       /* underflow range error */
      |         ^~~~~~~~~
C:/rtools45/x86_64-w64-mingw32.static.posix/include/math.h:32:9: note: this is the location of the previous definition
   32 | #define UNDERFLOW       _UNDERFLOW
      |         ^~~~~~~~~
./mconf.h:104:9: warning: "TLOSS" redefined
  104 | #define TLOSS           5       /* total loss of precision */
      |         ^~~~~
C:/rtools45/x86_64-w64-mingw32.static.posix/include/math.h:33:9: note: this is the location of the previous definition
   33 | #define TLOSS           _TLOSS
      |         ^~~~~
./mconf.h:105:9: warning: "PLOSS" redefined
  105 | #define PLOSS           6       /* partial loss of precision */
      |         ^~~~~
C:/rtools45/x86_64-w64-mingw32.static.posix/include/math.h:34:9: note: this is the location of the previous definition
   34 | #define PLOSS           _PLOSS
      |         ^~~~~
mtherr.c: In function 'mtherr':
mtherr.c:77:5: warning: old-style function definition [-Wold-style-definition]
   77 | int mtherr( name, code )
      |     ^~~~~~
gcc  -I"F:/biocbuild/bbs-3.22-bioc/R/include" -DNDEBUG     -I"C:/rtools45/x86_64-w64-mingw32.static.posix/include"   -D R_NO_REMAP -I.    -O2 -Wall -std=gnu2x  -mfpmath=sse -msse2 -mstackrealign   -c ringo_stuff.c -o ringo_stuff.o
ringo_stuff.c:13:24: warning: 'Ringo_calls' defined but not used [-Wunused-variable]
   13 | static R_CallMethodDef Ringo_calls[] = {
      |                        ^~~~~~~~~~~
g++ -std=gnu++17 -shared -s -static-libgcc -o Repitools.dll tmp.def const.o hyp2f1.o mmeansd.o mtherr.o ringo_stuff.o -LC:/rtools45/x86_64-w64-mingw32.static.posix/lib/x64 -LC:/rtools45/x86_64-w64-mingw32.static.posix/lib -LF:/biocbuild/bbs-3.22-bioc/R/bin/x64 -lR
installing to F:/biocbuild/bbs-3.22-bioc/meat/Repitools.buildbin-libdir/00LOCK-Repitools/00new/Repitools/libs/x64
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* MD5 sums
packaged installation of 'Repitools' as Repitools_1.55.0.zip
* DONE (Repitools)