HyungJun Cho
| Snapshot Date: 2025-10-24 13:45 -0400 (Fri, 24 Oct 2025) |
| git_url: https://git.bioconductor.org/packages/HEM |
| git_branch: devel |
| git_last_commit: 82d5f36 |
| git_last_commit_date: 2025-04-15 09:34:45 -0400 (Tue, 15 Apr 2025) |
| Back to Multiple platform build/check report for BioC 3.22: simplified long |
|
This page was generated on 2025-10-25 12:06 -0400 (Sat, 25 Oct 2025).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 24.04.3 LTS) | x86_64 | 4.5.1 Patched (2025-08-23 r88802) -- "Great Square Root" | 4901 |
| lconway | macOS 12.7.6 Monterey | x86_64 | 4.5.1 Patched (2025-09-10 r88807) -- "Great Square Root" | 4691 |
| kjohnson3 | macOS 13.7.7 Ventura | arm64 | 4.5.1 Patched (2025-09-10 r88807) -- "Great Square Root" | 4637 |
| taishan | Linux (openEuler 24.03 LTS) | aarch64 | 4.5.0 (2025-04-11) -- "How About a Twenty-Six" | 4658 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 969/2361 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| HEM 1.81.0 (landing page) HyungJun Cho
| nebbiolo2 | Linux (Ubuntu 24.04.3 LTS) / x86_64 | OK | OK | OK | | ||||||||
| lconway | macOS 12.7.6 Monterey / x86_64 | OK | OK | OK | OK | | ||||||||
| kjohnson3 | macOS 13.7.7 Ventura / arm64 | ERROR | ERROR | skipped | skipped | |||||||||
| taishan | Linux (openEuler 24.03 LTS) / aarch64 | OK | NA | NA | ||||||||||
|
To the developers/maintainers of the HEM package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/HEM.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: HEM |
| Version: 1.81.0 |
| Command: /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL HEM |
| StartedAt: 2025-10-24 15:09:41 -0400 (Fri, 24 Oct 2025) |
| EndedAt: 2025-10-24 15:09:42 -0400 (Fri, 24 Oct 2025) |
| EllapsedTime: 0.7 seconds |
| RetCode: 1 |
| Status: ERROR |
##############################################################################
##############################################################################
###
### Running command:
###
### /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL HEM
###
##############################################################################
##############################################################################
* installing to library ‘/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library’
* installing *source* package ‘HEM’ ...
** this is package ‘HEM’ version ‘1.81.0’
** using staged installation
** libs
using C compiler: ‘Apple clang version 15.0.0 (clang-1500.1.0.2.5)’
using SDK: ‘MacOSX11.3.1.sdk’
clang -arch arm64 -std=gnu2x -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c hem.c -o hem.o
In file included from hem.c:17:
./random4f.h:126:18: error: unknown type name 'alpha'
double gammadist(alpha)
^
./random4f.h:126:24: error: expected ';' after top level declarator
double gammadist(alpha)
^
;
./random4f.h:128:1: error: expected identifier or '('
{ double u0,x,y;
^
hem.c:980:44: warning: variable 'raccept' set but not used [-Wunused-but-set-variable]
double temp, temp2, MHratio, U, old, new, raccept;
^
hem.c:1079:44: warning: variable 'raccept' set but not used [-Wunused-but-set-variable]
double temp, temp2, MHratio, U, old, new, raccept;
^
hem.c:1390:12: warning: variable 'k' set but not used [-Wunused-but-set-variable]
int i, j, k, m, n;
^
hem.c:1593:16: warning: variable 'l' set but not used [-Wunused-but-set-variable]
int i, j, k, l;
^
4 warnings and 3 errors generated.
make: *** [hem.o] Error 1
ERROR: compilation failed for package ‘HEM’
* removing ‘/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/HEM’