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This page was generated on 2025-10-24 12:07 -0400 (Fri, 24 Oct 2025).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 24.04.3 LTS) | x86_64 | 4.5.1 Patched (2025-08-23 r88802) -- "Great Square Root" | 4898 |
| lconway | macOS 12.7.6 Monterey | x86_64 | 4.5.1 Patched (2025-09-10 r88807) -- "Great Square Root" | 4688 |
| kjohnson3 | macOS 13.7.7 Ventura | arm64 | 4.5.1 Patched (2025-09-10 r88807) -- "Great Square Root" | 4634 |
| taishan | Linux (openEuler 24.03 LTS) | aarch64 | 4.5.0 (2025-04-11) -- "How About a Twenty-Six" | 4658 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 585/2359 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| DifferentialRegulation 2.7.0 (landing page) Simone Tiberi
| nebbiolo2 | Linux (Ubuntu 24.04.3 LTS) / x86_64 | OK | OK | OK |  | ||||||||
| lconway | macOS 12.7.6 Monterey / x86_64 | OK | OK | OK | OK | | ||||||||
| kjohnson3 | macOS 13.7.7 Ventura / arm64 | OK | OK | OK | OK | | ||||||||
| taishan | Linux (openEuler 24.03 LTS) / aarch64 | OK | TIMEOUT | skipped | ||||||||||
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To the developers/maintainers of the DifferentialRegulation package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/DifferentialRegulation.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. - See Martin Grigorov's blog post for how to debug Linux ARM64 related issues on a x86_64 host. |
| Package: DifferentialRegulation |
| Version: 2.7.0 |
| Command: /home/biocbuild/R/R/bin/R CMD INSTALL DifferentialRegulation |
| StartedAt: 2025-10-23 20:58:30 -0000 (Thu, 23 Oct 2025) |
| EndedAt: 2025-10-23 20:59:48 -0000 (Thu, 23 Oct 2025) |
| EllapsedTime: 78.3 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### /home/biocbuild/R/R/bin/R CMD INSTALL DifferentialRegulation
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* installing to library ‘/home/biocbuild/R/R-4.5.0/site-library’
* installing *source* package ‘DifferentialRegulation’ ...
** this is package ‘DifferentialRegulation’ version ‘2.7.0’
** using staged installation
** libs
using C++ compiler: ‘aarch64-unknown-linux-gnu-g++ (GCC) 14.2.0’
using C++17
/opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-g++ -std=gnu++17 -I"/home/biocbuild/R/R-4.5.0/include" -DNDEBUG -I'/home/biocbuild/R/R-4.5.0/site-library/Rcpp/include' -I'/home/biocbuild/R/R-4.5.0/site-library/RcppArmadillo/include' -I/usr/local/include -fPIC -g -O2 -Wall -Werror=format-security -c RcppExports.cpp -o RcppExports.o
/opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-g++ -std=gnu++17 -I"/home/biocbuild/R/R-4.5.0/include" -DNDEBUG -I'/home/biocbuild/R/R-4.5.0/site-library/Rcpp/include' -I'/home/biocbuild/R/R-4.5.0/site-library/RcppArmadillo/include' -I/usr/local/include -fPIC -g -O2 -Wall -Werror=format-security -c Rcpp_MCMC.cpp -o Rcpp_MCMC.o
Rcpp_MCMC.cpp: In function ‘Rcpp::NumericVector Rcpp_MCMC(const unsigned int&, const unsigned int&, const unsigned int&, const unsigned int&, const Rcpp::IntegerVector&, const Rcpp::IntegerVector&, const Rcpp::ListOf<Rcpp::Vector<13> >&, const Rcpp::IntegerVector&, const unsigned int&, const unsigned int&, Rcpp::NumericMatrix&, Rcpp::ListOf<Rcpp::Matrix<14> >&, const Rcpp::NumericMatrix&, const Rcpp::ListOf<Rcpp::ListOf<Rcpp::Vector<13> > >&, const Rcpp::ListOf<Rcpp::Vector<13> >&, Rcpp::ListOf<Rcpp::Matrix<14> >&, Rcpp::ListOf<Rcpp::Matrix<14> >&, Rcpp::ListOf<Rcpp::Matrix<14> >&, Rcpp::ListOf<Rcpp::Matrix<14> >&, const Rcpp::NumericVector&, const Rcpp::NumericVector&, const Rcpp::IntegerVector&, Rcpp::ListOf<Rcpp::Matrix<14> >&, const Rcpp::IntegerVector&, const double&)’:
Rcpp_MCMC.cpp:305:32: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘const Rcpp::traits::storage_type<13>::type’ {aka ‘const int’} [-Wsign-compare]
305 | for(sample = 0; sample < n_samples_per_group[ gr ]; sample ++){
Rcpp_MCMC.cpp:135:10: warning: unused variable ‘tmp_1’ [-Wunused-variable]
135 | double tmp_1, tmp_2, tmp_3;
| ^~~~~
Rcpp_MCMC.cpp:135:17: warning: unused variable ‘tmp_2’ [-Wunused-variable]
135 | double tmp_1, tmp_2, tmp_3;
| ^~~~~
Rcpp_MCMC.cpp:135:24: warning: unused variable ‘tmp_3’ [-Wunused-variable]
135 | double tmp_1, tmp_2, tmp_3;
| ^~~~~
Rcpp_MCMC.cpp:394:10: warning: ‘ll_original’ may be used uninitialized [-Wmaybe-uninitialized]
394 | ll += ll_original;
| ~~~^~~~~~~~~~~~~~
Rcpp_MCMC.cpp:296:21: note: ‘ll_original’ was declared here
296 | double ll_prop, ll_original, ll = 0;
| ^~~~~~~~~~~
/opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-g++ -std=gnu++17 -I"/home/biocbuild/R/R-4.5.0/include" -DNDEBUG -I'/home/biocbuild/R/R-4.5.0/site-library/Rcpp/include' -I'/home/biocbuild/R/R-4.5.0/site-library/RcppArmadillo/include' -I/usr/local/include -fPIC -g -O2 -Wall -Werror=format-security -c Rcpp_MCMC_EC_US.cpp -o Rcpp_MCMC_EC_US.o
Rcpp_MCMC_EC_US.cpp: In function ‘Rcpp::NumericVector Rcpp_MCMC_EC_US(const unsigned int&, const unsigned int&, const unsigned int&, const unsigned int&, const Rcpp::IntegerVector&, const Rcpp::IntegerVector&, const Rcpp::ListOf<Rcpp::Vector<13> >&, const Rcpp::IntegerVector&, const unsigned int&, const unsigned int&, Rcpp::NumericMatrix&, Rcpp::ListOf<Rcpp::Matrix<14> >&, const Rcpp::NumericMatrix&, const Rcpp::ListOf<Rcpp::ListOf<Rcpp::Vector<13> > >&, const Rcpp::ListOf<Rcpp::Vector<13> >&, Rcpp::ListOf<Rcpp::Matrix<14> >&, Rcpp::ListOf<Rcpp::Matrix<14> >&, Rcpp::ListOf<Rcpp::Matrix<14> >&, const Rcpp::NumericVector&, const Rcpp::NumericVector&, const Rcpp::IntegerVector&, const Rcpp::IntegerVector&, const Rcpp::NumericVector&, const Rcpp::NumericVector&, const double&)’:
Rcpp_MCMC_EC_US.cpp:310:32: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘const Rcpp::traits::storage_type<13>::type’ {aka ‘const int’} [-Wsign-compare]
310 | for(sample = 0; sample < n_samples_per_group[ gr ]; sample ++){
Rcpp_MCMC_EC_US.cpp:130:10: warning: unused variable ‘tmp_1’ [-Wunused-variable]
130 | double tmp_1, tmp_2, tmp;
| ^~~~~
Rcpp_MCMC_EC_US.cpp:130:17: warning: unused variable ‘tmp_2’ [-Wunused-variable]
130 | double tmp_1, tmp_2, tmp;
| ^~~~~
Rcpp_MCMC_EC_US.cpp:399:12: warning: ‘ll_original’ may be used uninitialized [-Wmaybe-uninitialized]
399 | ll += ll_original;
| ~~~^~~~~~~~~~~~~~
Rcpp_MCMC_EC_US.cpp:290:21: note: ‘ll_original’ was declared here
290 | double ll_prop, ll_original, ll = 0;
| ^~~~~~~~~~~
/opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-g++ -std=gnu++17 -shared -L/home/biocbuild/R/R-4.5.0/lib -L/usr/local/lib -o DifferentialRegulation.so RcppExports.o Rcpp_MCMC.o Rcpp_MCMC_EC_US.o -lopenblas -lgfortran -lm -L/home/biocbuild/R/R-4.5.0/lib -lR
installing to /home/biocbuild/R/R-4.5.0/site-library/00LOCK-DifferentialRegulation/00new/DifferentialRegulation/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (DifferentialRegulation)