Back to Long Tests report for BioC 3.21

This page was generated on 2025-09-20 23:55 -0400 (Sat, 20 Sep 2025).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 24.04.3 LTS)x86_644.5.1 (2025-06-13) -- "Great Square Root" 4827
merida1macOS 12.7.5 Montereyx86_644.5.1 RC (2025-06-05 r88288) -- "Great Square Root" 4608
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 6/30HostnameOS / ArchCHECK
biodbChebi 1.14.0  (landing page)
Pierrick Roger
Snapshot Date: 2025-09-20 09:55 -0400 (Sat, 20 Sep 2025)
git_url: https://git.bioconductor.org/packages/biodbChebi
git_branch: RELEASE_3_21
git_last_commit: b8d718f
git_last_commit_date: 2025-04-15 12:39:10 -0400 (Tue, 15 Apr 2025)
nebbiolo1Linux (Ubuntu 24.04.3 LTS) / x86_64  ERROR  
merida1macOS 12.7.5 Monterey / x86_64  ERROR  

CHECK results for biodbChebi on nebbiolo1

To the developers/maintainers of the biodbChebi package:
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: biodbChebi
Version: 1.14.0
Command: /home/biocbuild/bbs-3.21-bioc/R/bin/R CMD check --test-dir=longtests --no-stop-on-test-error --no-codoc --no-examples --no-manual --ignore-vignettes --check-subdirs=no biodbChebi_1.14.0.tar.gz
StartedAt: 2025-09-20 16:01:08 -0400 (Sat, 20 Sep 2025)
EndedAt: 2025-09-20 16:06:34 -0400 (Sat, 20 Sep 2025)
EllapsedTime: 326.2 seconds
RetCode: 1
Status:   ERROR  
CheckDir: biodbChebi.Rcheck
Warnings: NA

Tests output

biodbChebi.Rcheck/tests/testthat.Rout.fail


R version 4.5.1 (2025-06-13) -- "Great Square Root"
Copyright (C) 2025 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu

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> # Script needed to run testthat automatically from ‘R CMD check’. See
> # testthat::test_dir documentation.
> library(testthat)
> library(biodbChebi)
> Sys.setenv(TESTTHAT_REPORTER="summary")
> Sys.setenv(BIODB_LOG_DST="console")
> test_check("biodbChebi")
biodb.INFO [2025-09-20 16:01:48.348][biodb::testContext]
biodb.INFO [2025-09-20 16:01:48.351][biodb::testContext] ********************************************************************************
biodb.INFO [2025-09-20 16:01:48.368][biodb::testContext] Test context - Generic long tests
biodb.INFO [2025-09-20 16:01:48.369][biodb::testContext] ********************************************************************************
biodb.INFO [2025-09-20 16:01:48.370][biodb::testContext]
biodb.INFO [2025-09-20 16:01:48.376][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.16.0.
biodb.DEBUG[2025-09-20 16:01:48.378][self$loadDefinitions] Load definitions from file "/home/biocbuild/bbs-3.21-bioc/R/site-library/biodb/definitions.yml".
biodb.DEBUG[2025-09-20 16:01:48.385][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-09-20 16:01:48.386][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2025-09-20 16:01:48.387][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2025-09-20 16:01:48.388][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-20 16:01:48.389][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-20 16:01:48.390][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-20 16:01:48.391][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2025-09-20 16:01:48.410][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2025-09-20 16:01:48.411][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-20 16:01:48.412][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-20 16:01:48.413][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-20 16:01:48.414][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2025-09-20 16:01:48.415][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2025-09-20 16:01:48.416][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-20 16:01:48.417][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-20 16:01:48.418][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-20 16:01:48.419][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2025-09-20 16:01:48.421][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2025-09-20 16:01:48.422][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2025-09-20 16:01:48.423][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-20 16:01:48.424][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-20 16:01:48.425][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-20 16:01:48.426][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2025-09-20 16:01:48.427][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2025-09-20 16:01:48.428][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2025-09-20 16:01:48.429][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-20 16:01:48.430][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-20 16:01:48.431][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-20 16:01:48.432][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2025-09-20 16:01:48.433][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2025-09-20 16:01:48.434][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-20 16:01:48.435][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-20 16:01:48.436][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-20 16:01:48.437][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2025-09-20 16:01:48.438][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2025-09-20 16:01:48.439][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2025-09-20 16:01:48.440][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-20 16:01:48.441][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-20 16:01:48.442][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-20 16:01:48.443][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2025-09-20 16:01:48.444][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2025-09-20 16:01:48.445][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-20 16:01:48.446][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-20 16:01:48.447][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-20 16:01:48.448][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2025-09-20 16:01:48.456][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2025-09-20 16:01:48.457][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2025-09-20 16:01:48.459][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-20 16:01:48.460][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-20 16:01:48.461][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-20 16:01:48.462][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2025-09-20 16:01:48.463][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2025-09-20 16:01:48.464][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2025-09-20 16:01:48.466][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2025-09-20 16:01:48.467][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2025-09-20 16:01:48.468][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2025-09-20 16:01:48.469][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-20 16:01:48.470][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-20 16:01:48.471][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-20 16:01:48.472][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2025-09-20 16:01:48.474][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2025-09-20 16:01:48.475][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-20 16:01:48.476][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-20 16:01:48.477][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-20 16:01:48.478][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2025-09-20 16:01:48.479][self$set] Set key entries.sep to "|".
biodb.DEBUG[2025-09-20 16:01:48.480][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-20 16:01:48.481][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-20 16:01:48.482][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-20 16:01:48.483][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2025-09-20 16:01:48.485][self$set] Set key offline to FALSE.
biodb.DEBUG[2025-09-20 16:01:48.486][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-20 16:01:48.487][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-20 16:01:48.488][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-20 16:01:48.489][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2025-09-20 16:01:48.490][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2025-09-20 16:01:48.491][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-20 16:01:48.492][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-20 16:01:48.493][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-20 16:01:48.494][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2025-09-20 16:01:48.496][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2025-09-20 16:01:48.497][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-20 16:01:48.498][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-20 16:01:48.499][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-20 16:01:48.500][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2025-09-20 16:01:48.501][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2025-09-20 16:01:48.505][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2025-09-20 16:01:48.506][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-20 16:01:48.507][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-20 16:01:48.508][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-20 16:01:48.510][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2025-09-20 16:01:48.511][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2025-09-20 16:01:48.512][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2025-09-20 16:01:48.513][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-20 16:01:48.514][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-20 16:01:48.515][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-20 16:01:48.520][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2025-09-20 16:01:48.560][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-09-20 16:01:48.578][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2025-09-20 16:01:48.579][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-09-20 16:01:48.598][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-09-20 16:01:48.599][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-09-20 16:01:48.600][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-09-20 16:01:48.601][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-09-20 16:01:48.602][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-09-20 16:01:48.603][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2025-09-20 16:01:48.604][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-09-20 16:01:48.605][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-09-20 16:01:48.606][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2025-09-20 16:01:48.607][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-09-20 16:01:48.609][self$setPropertyValue] Setting property "parsing.expr" to "<NULL>".
biodb.DEBUG[2025-09-20 16:01:48.610][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-09-20 16:01:48.611][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-09-20 16:01:48.611][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-09-20 16:01:48.611][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-09-20 16:01:48.611][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2025-09-20 16:01:48.611][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2025-09-20 16:01:48.612][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-09-20 16:01:48.613][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-09-20 16:01:48.614][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-09-20 16:01:48.615][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-09-20 16:01:48.616][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-09-20 16:01:48.617][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-09-20 16:01:48.619][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-09-20 16:01:48.620][self$setPropertyValue] Setting property "urls" to "<NULL>".
biodb.DEBUG[2025-09-20 16:01:48.621][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-09-20 16:01:48.622][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-09-20 16:01:48.623][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-09-20 16:01:48.624][self$setPropertyValue] Setting property "xml.ns" to "<NULL>".
biodb.DEBUG[2025-09-20 16:01:48.626][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2025-09-20 16:01:48.628][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-09-20 16:01:48.629][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2025-09-20 16:01:48.630][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-09-20 16:01:48.631][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-09-20 16:01:48.632][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-09-20 16:01:48.634][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-09-20 16:01:48.635][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-09-20 16:01:48.636][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-09-20 16:01:48.637][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2025-09-20 16:01:48.638][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-09-20 16:01:48.639][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-09-20 16:01:48.641][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2025-09-20 16:01:48.642][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-09-20 16:01:48.643][self$setPropertyValue] Setting property "parsing.expr" to "<NULL>".
biodb.DEBUG[2025-09-20 16:01:48.644][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-09-20 16:01:48.645][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-09-20 16:01:48.645][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-09-20 16:01:48.645][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-09-20 16:01:48.645][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2025-09-20 16:01:48.645][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2025-09-20 16:01:48.646][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-09-20 16:01:48.647][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-09-20 16:01:48.648][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-09-20 16:01:48.649][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-09-20 16:01:48.651][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-09-20 16:01:48.652][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-09-20 16:01:48.653][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-09-20 16:01:48.654][self$setPropertyValue] Setting property "urls" to "<NULL>".
biodb.DEBUG[2025-09-20 16:01:48.655][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-09-20 16:01:48.656][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-09-20 16:01:48.657][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-09-20 16:01:48.658][self$setPropertyValue] Setting property "xml.ns" to "<NULL>".
biodb.DEBUG[2025-09-20 16:01:48.660][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2025-09-20 16:01:48.662][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-09-20 16:01:48.663][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2025-09-20 16:01:48.664][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-09-20 16:01:48.665][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-09-20 16:01:48.666][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-09-20 16:01:48.667][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-09-20 16:01:48.669][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-09-20 16:01:48.670][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-09-20 16:01:48.671][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2025-09-20 16:01:48.672][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-09-20 16:01:48.673][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2025-09-20 16:01:48.674][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2025-09-20 16:01:48.675][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-09-20 16:01:48.677][self$setPropertyValue] Setting property "parsing.expr" to "<NULL>".
biodb.DEBUG[2025-09-20 16:01:48.678][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-09-20 16:01:48.679][self$setPropertyValue] Setting property "searchable.fields" to "<NULL>".
biodb.DEBUG[2025-09-20 16:01:48.680][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-09-20 16:01:48.681][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-09-20 16:01:48.682][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-09-20 16:01:48.683][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-09-20 16:01:48.684][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-09-20 16:01:48.685][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-09-20 16:01:48.686][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-09-20 16:01:48.687][self$setPropertyValue] Setting property "urls" to "<NULL>".
biodb.DEBUG[2025-09-20 16:01:48.688][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-09-20 16:01:48.689][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-09-20 16:01:48.690][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-09-20 16:01:48.691][self$setPropertyValue] Setting property "xml.ns" to "<NULL>".
biodb.DEBUG[2025-09-20 16:01:48.692][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2025-09-20 16:01:48.694][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-09-20 16:01:48.695][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2025-09-20 16:01:48.696][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-09-20 16:01:48.697][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-09-20 16:01:48.698][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-09-20 16:01:48.699][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-09-20 16:01:48.701][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-09-20 16:01:48.702][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-09-20 16:01:48.703][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2025-09-20 16:01:48.704][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-09-20 16:01:48.705][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2025-09-20 16:01:48.706][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2025-09-20 16:01:48.707][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-09-20 16:01:48.708][self$setPropertyValue] Setting property "parsing.expr" to "<NULL>".
biodb.DEBUG[2025-09-20 16:01:48.709][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-09-20 16:01:48.710][self$setPropertyValue] Setting property "searchable.fields" to "<NULL>".
biodb.DEBUG[2025-09-20 16:01:48.711][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-09-20 16:01:48.712][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-09-20 16:01:48.713][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-09-20 16:01:48.714][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-09-20 16:01:48.715][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-09-20 16:01:48.716][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-09-20 16:01:48.717][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-09-20 16:01:48.718][self$setPropertyValue] Setting property "urls" to "<NULL>".
biodb.DEBUG[2025-09-20 16:01:48.719][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-09-20 16:01:48.720][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-09-20 16:01:48.721][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-09-20 16:01:48.722][self$setPropertyValue] Setting property "xml.ns" to "<NULL>".
biodb.DEBUG[2025-09-20 16:01:48.726][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-09-20 16:01:48.727][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2025-09-20 16:01:48.728][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-20 16:01:48.729][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-20 16:01:48.730][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-20 16:01:48.731][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-20 16:01:48.732][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-20 16:01:48.733][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-20 16:01:48.734][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-20 16:01:48.735][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-20 16:01:48.736][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-20 16:01:48.737][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-20 16:01:48.738][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-20 16:01:48.739][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-20 16:01:48.740][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-20 16:01:48.741][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-20 16:01:48.742][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-20 16:01:48.743][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-20 16:01:48.744][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-20 16:01:48.745][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-20 16:01:48.746][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-20 16:01:48.747][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-20 16:01:48.747][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-20 16:01:48.748][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-20 16:01:48.749][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-20 16:01:48.750][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-20 16:01:48.751][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-20 16:01:48.752][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-20 16:01:48.753][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-20 16:01:48.754][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-20 16:01:48.755][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-20 16:01:48.756][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-20 16:01:48.757][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-20 16:01:48.758][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-20 16:01:48.759][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-20 16:01:48.760][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-20 16:01:48.761][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-20 16:01:48.762][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-20 16:01:48.763][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-20 16:01:48.764][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-20 16:01:48.765][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-20 16:01:48.766][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-20 16:01:48.767][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-20 16:01:48.767][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-20 16:01:48.768][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-20 16:01:48.769][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-20 16:01:48.770][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-20 16:01:48.771][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-20 16:01:48.772][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-20 16:01:48.773][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-20 16:01:48.774][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-20 16:01:48.775][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-20 16:01:48.776][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-20 16:01:48.777][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-20 16:01:48.778][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-20 16:01:48.779][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-20 16:01:48.780][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-20 16:01:48.781][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-20 16:01:48.782][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-20 16:01:48.783][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-20 16:01:48.784][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-20 16:01:48.785][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-20 16:01:48.785][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-20 16:01:48.786][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-20 16:01:48.787][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-20 16:01:48.788][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-20 16:01:48.789][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-20 16:01:48.790][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-20 16:01:48.797][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-20 16:01:48.798][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-20 16:01:48.799][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-20 16:01:48.799][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-20 16:01:48.800][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-20 16:01:48.801][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-20 16:01:48.802][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-20 16:01:48.803][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-20 16:01:48.804][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-20 16:01:48.805][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-20 16:01:48.806][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-20 16:01:48.807][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-20 16:01:48.808][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-20 16:01:48.809][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-20 16:01:48.810][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-20 16:01:48.811][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-20 16:01:48.811][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-20 16:01:48.812][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-20 16:01:48.813][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-20 16:01:48.814][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-20 16:01:48.815][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2025-09-20 16:01:48.820][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2025-09-20 16:01:48.822][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2025-09-20 16:01:48.823][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2025-09-20 16:01:48.825][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2025-09-20 16:01:48.826][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2025-09-20 16:01:48.828][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2025-09-20 16:01:48.829][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2025-09-20 16:01:48.831][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2025-09-20 16:01:48.832][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2025-09-20 16:01:48.834][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2025-09-20 16:01:48.835][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2025-09-20 16:01:48.837][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2025-09-20 16:01:48.838][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2025-09-20 16:01:48.840][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2025-09-20 16:01:48.841][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2025-09-20 16:01:48.843][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2025-09-20 16:01:48.844][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2025-09-20 16:01:48.846][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2025-09-20 16:01:48.847][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2025-09-20 16:01:48.849][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2025-09-20 16:01:48.850][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2025-09-20 16:01:48.852][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2025-09-20 16:01:48.853][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2025-09-20 16:01:48.855][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2025-09-20 16:01:48.856][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2025-09-20 16:01:48.858][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2025-09-20 16:01:48.859][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2025-09-20 16:01:48.861][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2025-09-20 16:01:48.862][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2025-09-20 16:01:48.864][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2025-09-20 16:01:48.865][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2025-09-20 16:01:48.867][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2025-09-20 16:01:48.868][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2025-09-20 16:01:48.870][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2025-09-20 16:01:48.871][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2025-09-20 16:01:48.873][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2025-09-20 16:01:48.874][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2025-09-20 16:01:48.875][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2025-09-20 16:01:48.877][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2025-09-20 16:01:48.878][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2025-09-20 16:01:48.880][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2025-09-20 16:01:48.881][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2025-09-20 16:01:48.883][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2025-09-20 16:01:48.884][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2025-09-20 16:01:48.886][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2025-09-20 16:01:48.887][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2025-09-20 16:01:48.889][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2025-09-20 16:01:48.890][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2025-09-20 16:01:48.892][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2025-09-20 16:01:48.893][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2025-09-20 16:01:48.895][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2025-09-20 16:01:48.896][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2025-09-20 16:01:48.898][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2025-09-20 16:01:48.899][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2025-09-20 16:01:48.901][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2025-09-20 16:01:48.902][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2025-09-20 16:01:48.903][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2025-09-20 16:01:48.905][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2025-09-20 16:01:48.906][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2025-09-20 16:01:48.908][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2025-09-20 16:01:48.909][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2025-09-20 16:01:48.911][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2025-09-20 16:01:48.912][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2025-09-20 16:01:48.914][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2025-09-20 16:01:48.915][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2025-09-20 16:01:48.917][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2025-09-20 16:01:48.918][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2025-09-20 16:01:48.919][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2025-09-20 16:01:48.921][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2025-09-20 16:01:48.922][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2025-09-20 16:01:48.924][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2025-09-20 16:01:48.925][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2025-09-20 16:01:48.927][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2025-09-20 16:01:48.928][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2025-09-20 16:01:48.930][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2025-09-20 16:01:48.931][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2025-09-20 16:01:48.933][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2025-09-20 16:01:48.934][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2025-09-20 16:01:48.936][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2025-09-20 16:01:48.937][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2025-09-20 16:01:48.938][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2025-09-20 16:01:48.940][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2025-09-20 16:01:48.946][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2025-09-20 16:01:48.948][initialize] This is biodb version 1.16.0.
biodb.DEBUG[2025-09-20 16:01:48.952][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-09-20 16:01:48.953][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2025-09-20 16:01:48.953][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-20 16:01:48.954][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2025-09-20 16:01:48.955][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-20 16:01:48.960][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-20 16:01:48.961][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-20 16:01:48.962][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-20 16:01:48.963][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-20 16:01:48.964][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-20 16:01:48.965][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-20 16:01:48.966][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-20 16:01:48.967][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-20 16:01:48.968][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-20 16:01:48.969][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-20 16:01:48.970][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-20 16:01:48.971][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-20 16:01:48.972][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-20 16:01:48.973][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-20 16:01:48.974][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-20 16:01:48.975][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-20 16:01:48.976][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-20 16:01:48.977][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-20 16:01:48.978][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-20 16:01:48.985][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-20 16:01:48.986][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-20 16:01:48.987][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-20 16:01:48.988][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-20 16:01:48.989][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-20 16:01:48.990][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-20 16:01:48.991][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-20 16:01:48.992][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-20 16:01:48.993][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-20 16:01:48.994][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-20 16:01:48.994][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-20 16:01:48.995][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-20 16:01:48.996][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-20 16:01:48.997][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-20 16:01:48.998][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-20 16:01:48.999][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-20 16:01:49.000][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-20 16:01:49.001][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-20 16:01:49.002][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-20 16:01:49.003][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-20 16:01:49.004][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-20 16:01:49.005][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-20 16:01:49.005][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-20 16:01:49.006][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-20 16:01:49.007][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-20 16:01:49.008][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-20 16:01:49.009][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-20 16:01:49.010][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-20 16:01:49.011][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-20 16:01:49.012][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-20 16:01:49.013][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-20 16:01:49.014][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-20 16:01:49.015][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-20 16:01:49.016][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-20 16:01:49.017][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-20 16:01:49.018][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-20 16:01:49.019][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-20 16:01:49.020][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-20 16:01:49.021][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-20 16:01:49.022][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-20 16:01:49.023][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-20 16:01:49.024][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-20 16:01:49.025][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-20 16:01:49.026][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-20 16:01:49.027][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-20 16:01:49.027][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-20 16:01:49.028][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-20 16:01:49.029][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-20 16:01:49.030][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-20 16:01:49.031][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-20 16:01:49.032][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-20 16:01:49.033][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-20 16:01:49.034][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-20 16:01:49.035][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-20 16:01:49.036][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-20 16:01:49.037][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-20 16:01:49.038][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-20 16:01:49.039][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-20 16:01:49.040][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-20 16:01:49.041][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-20 16:01:49.042][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-20 16:01:49.043][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-20 16:01:49.044][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-20 16:01:49.045][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-20 16:01:49.046][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-20 16:01:49.046][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-20 16:01:49.047][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-20 16:01:49.048][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-20 16:01:49.049][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-20 16:01:49.050][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-20 16:01:49.051][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-20 16:01:49.052][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-20 16:01:49.053][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-20 16:01:49.054][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-20 16:01:49.055][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-20 16:01:49.056][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-20 16:01:49.057][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-20 16:01:49.058][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-20 16:01:49.059][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-20 16:01:49.060][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-20 16:01:49.061][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-20 16:01:49.062][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-20 16:01:49.063][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-20 16:01:49.064][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-20 16:01:49.065][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-20 16:01:49.066][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-20 16:01:49.067][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-20 16:01:49.067][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-20 16:01:49.068][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-20 16:01:49.069][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-20 16:01:49.070][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-20 16:01:49.071][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-20 16:01:49.072][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-20 16:01:49.073][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-20 16:01:49.074][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-20 16:01:49.075][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-20 16:01:49.076][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-20 16:01:49.077][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-20 16:01:49.078][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-20 16:01:49.079][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-20 16:01:49.081][biodb$loadDefinitions] Load definitions from file "/home/biocbuild/bbs-3.21-bioc-longtests/meat/biodbChebi.Rcheck/biodbChebi/definitions.yml".
biodb.DEBUG[2025-09-20 16:01:49.092][self$getDbsInfo()$define] Define connector chebi.
biodb.DEBUG[2025-09-20 16:01:49.094][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-09-20 16:01:49.095][self$setPropertyValue] Setting property "description" to "NA".
biodb.DEBUG[2025-09-20 16:01:49.096][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-09-20 16:01:49.097][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-09-20 16:01:49.098][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-09-20 16:01:49.099][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-09-20 16:01:49.100][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2025-09-20 16:01:49.101][self$setPropertyValue] Setting property "entry.content.encoding" to "UTF-8".
biodb.DEBUG[2025-09-20 16:01:49.102][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2025-09-20 16:01:49.103][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-09-20 16:01:49.105][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-09-20 16:01:49.106][self$setPropertyValue] Setting property "name" to "ChEBI".
biodb.DEBUG[2025-09-20 16:01:49.107][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-09-20 16:01:49.108][self$setPropertyValue] Setting property "parsing.expr" to "substring-after(//chebi:return/chebi:chebiId,'CHEBI:')".
biodb.DEBUG[2025-09-20 16:01:49.108][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:charge".
biodb.DEBUG[2025-09-20 16:01:49.108][self$setPropertyValue] Setting property "parsing.expr" to "c("//chebi:Formulae/chebi:source[text()='ChEBI']/../chebi:data", "(//chebi:Formulae/chebi:data)[1]")".
biodb.DEBUG[2025-09-20 16:01:49.108][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:inchi".
biodb.DEBUG[2025-09-20 16:01:49.108][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:inchiKey".
biodb.DEBUG[2025-09-20 16:01:49.108][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:DatabaseLinks/chebi:type[text()='KEGG COMPOUND accession']/../chebi:data".
biodb.DEBUG[2025-09-20 16:01:49.108][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:mass".
biodb.DEBUG[2025-09-20 16:01:49.108][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:monoisotopicMass".
biodb.DEBUG[2025-09-20 16:01:49.108][self$setPropertyValue] Setting property "parsing.expr" to "c("//chebi:chebiAsciiName", "//chebi:Synonyms/chebi:data")".
biodb.DEBUG[2025-09-20 16:01:49.108][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:entityStar".
biodb.DEBUG[2025-09-20 16:01:49.108][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:smiles".
biodb.DEBUG[2025-09-20 16:01:49.109][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2025-09-20 16:01:49.110][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-09-20 16:01:49.110][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-09-20 16:01:49.110][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-09-20 16:01:49.111][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2025-09-20 16:01:49.112][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-09-20 16:01:49.113][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-09-20 16:01:49.114][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-09-20 16:01:49.116][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-09-20 16:01:49.116][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-09-20 16:01:49.118][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-09-20 16:01:49.119][self$setPropertyValue] Setting property "urls" to "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-09-20 16:01:49.119][self$setPropertyValue] Setting property "urls" to "https://www.ebi.ac.uk/webservices/chebi/2.0/".
biodb.DEBUG[2025-09-20 16:01:49.120][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-09-20 16:01:49.121][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-09-20 16:01:49.122][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2025-09-20 16:01:49.123][self$setPropertyValue] Setting property "xml.ns" to "https://www.ebi.ac.uk/webservices/chebi".
biodb.DEBUG[2025-09-20 16:01:49.123][self$setPropertyValue] Setting property "xml.ns" to "http://www.w3.org/2001/XMLSchema".
biodb.DEBUG[2025-09-20 16:01:49.129][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2025-09-20 16:01:49.131][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2025-09-20 16:01:49.133][self$getEntryFields()$define] Define field n_stars.
biodb.DEBUG[2025-09-20 16:01:49.134][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2025-09-20 16:01:49.136][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2025-09-20 16:01:49.138][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2025-09-20 16:01:49.162][super$initialize] Initialize connector chebi.
biodb.DEBUG[2025-09-20 16:01:49.164][super$initialize] Register connector chebi with the request scheduler
biodb.DEBUG[2025-09-20 16:01:49.168][private$bdb$getRequestScheduler()$re ...] Register connector chebi.
biodb.DEBUG[2025-09-20 16:01:49.172][private$addConnectorRules] Create new rule for URL "www.ebi.ac.uk" of connector "chebi".
biodb.DEBUG[2025-09-20 16:01:49.218][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-09-20 16:01:49.219][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-09-20 16:01:49.220][rule$addConnector] Connector "chebi" is already listed in rule "www.ebi.ac.uk".
biodb.DEBUG[2025-09-20 16:01:49.222][biodb$getFactory()$createConn] Creating new connector chebi for database class chebi .
biodb.INFO [2025-09-20 16:01:49.231][biodb::testThat]
biodb.INFO [2025-09-20 16:01:49.232][biodb::testThat] Running test function  test.entry.fields  (" Entry fields have a correct value ").
biodb.INFO [2025-09-20 16:01:49.233][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-09-20 16:01:49.234][biodb::testThat]
biodb.TRACE[2025-09-20 16:01:49.237][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/bbs-3.21-bioc-longtests/meat/biodbChebi.Rcheck/biodbChebi/testref/entry-chebi-15440-content.xml".
biodb.DEBUG[2025-09-20 16:01:49.239][biodb$getFactory()$createEntryFromCo ...] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-09-20 16:01:49.242][biodb$getFactory()$createEntryFromCo ...] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-09-20 16:01:49.250][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-20 16:01:49.251][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-20 16:01:49.252][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-20 16:01:49.266][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-20 16:01:49.267][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-20 16:01:49.268][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-20 16:01:49.269][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-20 16:01:49.278][ef$get] Asked field names are: accession.
biodb.TRACE[2025-09-20 16:01:49.279][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-20 16:01:49.280][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:49.281][ef$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:49.283][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-20 16:01:49.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-20 16:01:49.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:49.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:49.300][ef$get] Asked field names are: charge.
biodb.TRACE[2025-09-20 16:01:49.301][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-09-20 16:01:49.302][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:49.303][ef$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:49.331][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-09-20 16:01:49.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-09-20 16:01:49.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:49.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:49.335][ef$get] Asked field names are: formula.
biodb.TRACE[2025-09-20 16:01:49.336][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-20 16:01:49.337][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:49.338][ef$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:49.339][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-09-20 16:01:49.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-20 16:01:49.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:49.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:49.344][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-09-20 16:01:49.345][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-20 16:01:49.346][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:49.347][ef$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:49.348][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-09-20 16:01:49.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-20 16:01:49.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:49.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:49.353][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-20 16:01:49.354][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-20 16:01:49.355][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:49.356][ef$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:49.357][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-20 16:01:49.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-20 16:01:49.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:49.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:49.361][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-09-20 16:01:49.362][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-09-20 16:01:49.363][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:49.364][ef$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:49.366][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-09-20 16:01:49.367][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-09-20 16:01:49.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:49.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:49.370][ef$get] Asked field names are: mass.
biodb.TRACE[2025-09-20 16:01:49.371][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-20 16:01:49.372][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:49.373][ef$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:49.374][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-09-20 16:01:49.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-20 16:01:49.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:49.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:49.379][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-20 16:01:49.380][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-20 16:01:49.381][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:49.382][ef$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:49.383][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-20 16:01:49.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-20 16:01:49.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:49.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:49.397][ef$get] Asked field names are: name.
biodb.TRACE[2025-09-20 16:01:49.398][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-09-20 16:01:49.399][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:49.400][ef$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:49.401][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-20 16:01:49.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-20 16:01:49.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:49.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:49.405][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-09-20 16:01:49.406][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-09-20 16:01:49.407][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:49.408][ef$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:49.410][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-09-20 16:01:49.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-09-20 16:01:49.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:49.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:49.414][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-09-20 16:01:49.415][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-20 16:01:49.416][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:49.417][ef$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:49.418][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-09-20 16:01:49.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-20 16:01:49.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:49.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:49.423][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-20 16:01:49.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-20 16:01:49.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:49.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:49.427][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-20 16:01:49.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-20 16:01:49.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:49.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:49.431][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-20 16:01:49.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-20 16:01:49.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:49.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:49.435][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-20 16:01:49.436][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-20 16:01:49.437][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:49.438][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:49.440][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-20 16:01:49.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-20 16:01:49.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:49.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:49.444][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-20 16:01:49.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-20 16:01:49.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:49.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:49.448][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-20 16:01:49.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-20 16:01:49.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:49.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:49.486][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-20 16:01:49.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-20 16:01:49.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:49.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:49.490][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-20 16:01:49.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-20 16:01:49.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:49.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:49.494][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-20 16:01:49.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-20 16:01:49.497][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:49.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-20 16:01:49.499][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 15440.
biodb.TRACE[2025-09-20 16:01:49.501][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-09-20 16:01:49.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-20 16:01:49.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:49.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:49.506][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-09-20 16:01:49.507][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-20 16:01:49.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:49.509][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:49.539][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-20 16:01:49.540][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-20 16:01:49.541][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:49.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:49.543][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-20 16:01:49.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-20 16:01:49.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:49.546][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:49.547][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-20 16:01:49.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-20 16:01:49.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:49.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:49.551][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-20 16:01:49.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-20 16:01:49.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:49.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:49.555][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-09-20 16:01:49.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-09-20 16:01:49.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:49.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:49.559][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-09-20 16:01:49.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-09-20 16:01:49.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:49.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:49.564][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2025-09-20 16:01:49.565][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-09-20 16:01:49.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:49.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:49.568][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-09-20 16:01:49.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-09-20 16:01:49.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:49.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:49.588][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-20 16:01:49.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-20 16:01:49.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:49.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:49.605][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-20 16:01:49.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-20 16:01:49.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:49.608][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:49.613][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-20 16:01:49.614][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-20 16:01:49.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:49.616][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:49.617][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-20 16:01:49.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-20 16:01:49.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:49.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:49.622][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-20 16:01:49.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-20 16:01:49.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:49.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:49.627][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-20 16:01:49.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-20 16:01:49.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:49.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:49.632][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-20 16:01:49.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-20 16:01:49.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:49.635][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:49.636][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-20 16:01:49.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-20 16:01:49.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:49.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:49.640][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-20 16:01:49.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-20 16:01:49.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:49.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:49.645][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-20 16:01:49.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-20 16:01:49.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:49.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:49.649][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-20 16:01:49.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-20 16:01:49.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:49.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:49.660][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-20 16:01:49.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-20 16:01:49.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:49.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:49.664][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-20 16:01:49.665][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-20 16:01:49.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:49.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:49.668][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-20 16:01:49.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-20 16:01:49.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:49.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:49.673][ef$get] Asked field names are: accession.
biodb.TRACE[2025-09-20 16:01:49.674][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-20 16:01:49.675][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:49.676][ef$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:49.677][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-20 16:01:49.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-20 16:01:49.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:49.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:49.695][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-20 16:01:49.696][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-20 16:01:49.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:49.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:49.699][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-20 16:01:49.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-20 16:01:49.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:49.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:49.703][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-20 16:01:49.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-20 16:01:49.705][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:49.706][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:49.707][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-20 16:01:49.708][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-20 16:01:49.709][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:49.710][ef$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:49.711][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-20 16:01:49.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-20 16:01:49.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:49.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:49.723][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-20 16:01:49.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-20 16:01:49.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:49.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:49.727][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-20 16:01:49.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-20 16:01:49.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:49.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:49.732][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-20 16:01:49.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-20 16:01:49.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:49.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:49.736][ef$get] Asked field names are: name.
biodb.TRACE[2025-09-20 16:01:49.737][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-09-20 16:01:49.738][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:49.739][ef$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:49.740][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-20 16:01:49.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-20 16:01:49.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:49.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:49.752][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-09-20 16:01:49.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-20 16:01:49.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:49.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:49.756][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-09-20 16:01:49.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-20 16:01:49.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:49.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:49.760][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-09-20 16:01:49.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-20 16:01:49.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:49.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:49.764][ef$get] Asked field names are: formula.
biodb.TRACE[2025-09-20 16:01:49.766][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-20 16:01:49.767][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:49.768][ef$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:49.769][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-09-20 16:01:49.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-20 16:01:49.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:49.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:49.780][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-20 16:01:49.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-20 16:01:49.782][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:49.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:49.784][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-20 16:01:49.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-20 16:01:49.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:49.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:49.788][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-20 16:01:49.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-20 16:01:49.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:49.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:49.793][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-20 16:01:49.794][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-20 16:01:49.795][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:49.796][ef$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:49.797][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-20 16:01:49.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-20 16:01:49.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:49.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:49.808][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-20 16:01:49.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-20 16:01:49.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:49.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:49.813][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-20 16:01:49.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-20 16:01:49.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:49.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:49.817][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-20 16:01:49.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-20 16:01:49.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:49.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:49.821][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-20 16:01:49.822][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-20 16:01:49.823][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:49.824][ef$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:49.825][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-20 16:01:49.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-20 16:01:49.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:49.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:49.842][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-09-20 16:01:49.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-09-20 16:01:49.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:49.845][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:49.846][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-09-20 16:01:49.847][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-09-20 16:01:49.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:49.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:49.850][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-09-20 16:01:49.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-09-20 16:01:49.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:49.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:49.854][ef$get] Asked field names are: charge.
biodb.TRACE[2025-09-20 16:01:49.855][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-09-20 16:01:49.856][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:49.857][ef$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:49.858][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-09-20 16:01:49.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-09-20 16:01:49.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:49.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:49.870][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-09-20 16:01:49.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-09-20 16:01:49.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:49.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:49.874][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-09-20 16:01:49.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-09-20 16:01:49.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:49.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:49.878][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-09-20 16:01:49.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-09-20 16:01:49.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:49.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:49.882][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-09-20 16:01:49.884][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-09-20 16:01:49.885][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:49.886][ef$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:49.887][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-09-20 16:01:49.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-09-20 16:01:49.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:49.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:49.898][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-09-20 16:01:49.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-09-20 16:01:49.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:49.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:49.902][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-09-20 16:01:49.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-09-20 16:01:49.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:49.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:49.906][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-09-20 16:01:49.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-09-20 16:01:49.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:49.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:49.911][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-09-20 16:01:49.912][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-09-20 16:01:49.913][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:49.914][ef$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:49.915][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-09-20 16:01:49.916][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-09-20 16:01:49.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:49.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:49.927][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-09-20 16:01:49.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-20 16:01:49.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:49.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:49.931][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-09-20 16:01:49.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-20 16:01:49.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:49.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:49.935][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-09-20 16:01:49.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-20 16:01:49.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:49.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:49.939][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-09-20 16:01:49.940][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-20 16:01:49.941][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:49.942][ef$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:49.943][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-09-20 16:01:49.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-20 16:01:49.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:49.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:49.956][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-20 16:01:49.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-20 16:01:49.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:49.959][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:49.960][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-20 16:01:49.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-20 16:01:49.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:49.963][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:49.964][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-20 16:01:49.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-20 16:01:49.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:49.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:49.968][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-20 16:01:49.970][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-20 16:01:49.971][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:49.972][ef$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:49.973][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-20 16:01:49.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-20 16:01:49.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:49.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:49.989][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-09-20 16:01:49.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-20 16:01:49.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:49.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:49.994][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-09-20 16:01:49.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-20 16:01:49.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:49.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:49.998][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-09-20 16:01:49.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-20 16:01:50.000][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:50.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:50.002][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-09-20 16:01:50.003][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-20 16:01:50.004][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:50.005][ef$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:50.006][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-09-20 16:01:50.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-20 16:01:50.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:50.009][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:50.018][ef$get] Asked field names are: accession.
biodb.TRACE[2025-09-20 16:01:50.019][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-20 16:01:50.020][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:50.021][ef$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:50.025][ef$get] Asked field names are: charge.
biodb.TRACE[2025-09-20 16:01:50.026][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-09-20 16:01:50.027][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:50.028][ef$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:50.033][ef$get] Asked field names are: formula.
biodb.TRACE[2025-09-20 16:01:50.034][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-20 16:01:50.035][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:50.036][ef$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:50.040][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-09-20 16:01:50.041][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-20 16:01:50.042][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:50.043][ef$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:50.048][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-20 16:01:50.049][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-20 16:01:50.050][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:50.051][ef$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:50.055][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-09-20 16:01:50.056][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-09-20 16:01:50.057][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:50.058][ef$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:50.062][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-20 16:01:50.063][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-20 16:01:50.064][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:50.065][ef$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:50.070][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-20 16:01:50.071][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-20 16:01:50.072][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:50.073][ef$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:50.077][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-09-20 16:01:50.078][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-09-20 16:01:50.079][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:50.080][ef$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:50.084][ef$get] Asked field names are: name.
biodb.TRACE[2025-09-20 16:01:50.086][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-09-20 16:01:50.087][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:50.088][ef$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:50.092][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-09-20 16:01:50.093][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-20 16:01:50.094][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:50.095][ef$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:50.112][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/bbs-3.21-bioc-longtests/meat/biodbChebi.Rcheck/biodbChebi/testref/entry-chebi-2528-content.xml".
biodb.DEBUG[2025-09-20 16:01:50.154][biodb$getFactory()$createEntryFromCo ...] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-09-20 16:01:50.156][biodb$getFactory()$createEntryFromCo ...] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-09-20 16:01:50.158][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-20 16:01:50.159][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-20 16:01:50.159][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-20 16:01:50.164][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-20 16:01:50.165][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-20 16:01:50.166][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-20 16:01:50.167][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-20 16:01:50.170][ef$get] Asked field names are: accession.
biodb.TRACE[2025-09-20 16:01:50.171][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-20 16:01:50.172][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:50.173][ef$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:50.174][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-20 16:01:50.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-20 16:01:50.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:50.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:50.196][ef$get] Asked field names are: charge.
biodb.TRACE[2025-09-20 16:01:50.197][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-09-20 16:01:50.198][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:50.199][ef$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:50.201][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-09-20 16:01:50.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-09-20 16:01:50.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:50.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:50.205][ef$get] Asked field names are: formula.
biodb.TRACE[2025-09-20 16:01:50.206][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-20 16:01:50.207][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:50.208][ef$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:50.210][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-09-20 16:01:50.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-20 16:01:50.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:50.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:50.215][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-09-20 16:01:50.216][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-20 16:01:50.217][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:50.218][ef$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:50.219][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-09-20 16:01:50.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-20 16:01:50.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:50.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:50.223][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-20 16:01:50.224][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-20 16:01:50.226][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:50.226][ef$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:50.228][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-20 16:01:50.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-20 16:01:50.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:50.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:50.232][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-09-20 16:01:50.233][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-09-20 16:01:50.234][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:50.235][ef$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:50.237][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-09-20 16:01:50.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-09-20 16:01:50.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:50.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:50.241][ef$get] Asked field names are: mass.
biodb.TRACE[2025-09-20 16:01:50.242][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-20 16:01:50.243][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:50.244][ef$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:50.245][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-09-20 16:01:50.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-20 16:01:50.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:50.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:50.250][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-20 16:01:50.251][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-20 16:01:50.252][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:50.253][ef$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:50.254][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-20 16:01:50.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-20 16:01:50.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:50.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:50.259][ef$get] Asked field names are: name.
biodb.TRACE[2025-09-20 16:01:50.260][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-09-20 16:01:50.261][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:50.262][ef$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:50.263][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-20 16:01:50.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-20 16:01:50.265][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:50.266][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:50.273][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-09-20 16:01:50.274][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-09-20 16:01:50.275][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:50.276][ef$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:50.278][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-09-20 16:01:50.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-09-20 16:01:50.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:50.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:50.282][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-09-20 16:01:50.283][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-20 16:01:50.284][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:50.285][ef$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:50.286][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-09-20 16:01:50.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-20 16:01:50.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:50.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:50.291][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-20 16:01:50.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-20 16:01:50.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:50.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:50.295][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-20 16:01:50.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-20 16:01:50.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:50.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:50.299][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-20 16:01:50.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-20 16:01:50.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:50.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:50.303][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-20 16:01:50.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-20 16:01:50.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:50.307][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:50.308][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-20 16:01:50.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-20 16:01:50.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:50.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:50.312][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-20 16:01:50.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-20 16:01:50.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:50.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:50.316][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-20 16:01:50.317][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-20 16:01:50.318][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:50.319][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:50.321][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-20 16:01:50.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-20 16:01:50.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:50.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:50.325][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-20 16:01:50.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-20 16:01:50.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:50.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:50.329][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-20 16:01:50.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-20 16:01:50.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:50.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-20 16:01:50.333][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 2528.
biodb.TRACE[2025-09-20 16:01:50.355][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-09-20 16:01:50.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-20 16:01:50.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:50.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:50.360][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-09-20 16:01:50.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-20 16:01:50.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:50.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:50.364][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-20 16:01:50.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-20 16:01:50.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:50.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:50.368][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-20 16:01:50.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-20 16:01:50.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:50.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:50.372][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-20 16:01:50.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-20 16:01:50.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:50.376][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:50.377][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-20 16:01:50.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-20 16:01:50.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:50.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:50.381][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-09-20 16:01:50.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-09-20 16:01:50.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:50.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:50.385][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-09-20 16:01:50.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-09-20 16:01:50.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:50.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:50.389][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2025-09-20 16:01:50.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-09-20 16:01:50.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:50.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:50.394][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-09-20 16:01:50.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-09-20 16:01:50.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:50.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:50.399][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-20 16:01:50.400][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-20 16:01:50.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:50.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:50.407][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-20 16:01:50.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-20 16:01:50.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:50.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:50.420][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-20 16:01:50.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-20 16:01:50.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:50.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:50.424][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-20 16:01:50.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-20 16:01:50.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:50.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:50.428][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-20 16:01:50.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-20 16:01:50.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:50.431][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:50.434][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-20 16:01:50.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-20 16:01:50.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:50.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:50.438][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-20 16:01:50.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-20 16:01:50.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:50.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:50.442][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-20 16:01:50.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-20 16:01:50.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:50.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:50.447][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-20 16:01:50.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-20 16:01:50.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:50.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:50.451][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-20 16:01:50.452][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-20 16:01:50.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:50.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:50.455][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-20 16:01:50.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-20 16:01:50.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:50.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:50.476][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-20 16:01:50.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-20 16:01:50.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:50.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:50.480][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-20 16:01:50.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-20 16:01:50.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:50.484][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:50.485][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-20 16:01:50.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-20 16:01:50.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:50.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:50.489][ef$get] Asked field names are: accession.
biodb.TRACE[2025-09-20 16:01:50.490][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-20 16:01:50.491][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:50.492][ef$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:50.493][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-20 16:01:50.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-20 16:01:50.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:50.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:50.505][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-20 16:01:50.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-20 16:01:50.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:50.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:50.509][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-20 16:01:50.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-20 16:01:50.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:50.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:50.513][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-20 16:01:50.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-20 16:01:50.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:50.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:50.518][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-20 16:01:50.519][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-20 16:01:50.520][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:50.521][ef$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:50.522][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-20 16:01:50.523][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-20 16:01:50.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:50.525][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:50.533][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-20 16:01:50.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-20 16:01:50.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:50.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:50.537][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-20 16:01:50.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-20 16:01:50.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:50.541][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:50.542][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-20 16:01:50.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-20 16:01:50.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:50.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:50.546][ef$get] Asked field names are: name.
biodb.TRACE[2025-09-20 16:01:50.547][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-09-20 16:01:50.548][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:50.549][ef$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:50.550][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-20 16:01:50.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-20 16:01:50.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:50.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:50.567][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-09-20 16:01:50.568][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-20 16:01:50.569][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:50.570][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:50.571][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-09-20 16:01:50.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-20 16:01:50.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:50.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:50.575][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-09-20 16:01:50.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-20 16:01:50.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:50.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:50.579][ef$get] Asked field names are: formula.
biodb.TRACE[2025-09-20 16:01:50.580][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-20 16:01:50.581][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:50.582][ef$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:50.583][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-09-20 16:01:50.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-20 16:01:50.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:50.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:50.595][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-09-20 16:01:50.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-20 16:01:50.597][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:50.598][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:50.599][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-20 16:01:50.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-20 16:01:50.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:50.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:50.603][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-20 16:01:50.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-20 16:01:50.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:50.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:50.608][ef$get] Asked field names are: mass.
biodb.TRACE[2025-09-20 16:01:50.609][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-20 16:01:50.610][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:50.611][ef$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:50.612][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-09-20 16:01:50.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-20 16:01:50.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:50.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:50.623][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-20 16:01:50.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-20 16:01:50.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:50.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:50.628][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-20 16:01:50.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-20 16:01:50.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:50.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:50.632][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-20 16:01:50.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-20 16:01:50.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:50.635][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:50.636][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-20 16:01:50.637][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-20 16:01:50.638][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:50.639][ef$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:50.640][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-20 16:01:50.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-20 16:01:50.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:50.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:50.651][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-20 16:01:50.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-20 16:01:50.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:50.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:50.656][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-20 16:01:50.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-20 16:01:50.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:50.659][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:50.660][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-20 16:01:50.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-20 16:01:50.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:50.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:50.664][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-20 16:01:50.665][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-20 16:01:50.666][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:50.667][ef$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:50.668][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-20 16:01:50.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-20 16:01:50.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:50.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:50.679][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-09-20 16:01:50.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-09-20 16:01:50.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:50.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:50.684][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-09-20 16:01:50.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-09-20 16:01:50.686][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:50.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:50.688][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-09-20 16:01:50.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-09-20 16:01:50.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:50.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:50.692][ef$get] Asked field names are: charge.
biodb.TRACE[2025-09-20 16:01:50.693][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-09-20 16:01:50.694][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:50.695][ef$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:50.696][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-09-20 16:01:50.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-09-20 16:01:50.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:50.699][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:50.708][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-09-20 16:01:50.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-09-20 16:01:50.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:50.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:50.717][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-09-20 16:01:50.718][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-09-20 16:01:50.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:50.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:50.722][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-09-20 16:01:50.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-09-20 16:01:50.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:50.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:50.726][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-09-20 16:01:50.727][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-09-20 16:01:50.728][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:50.729][ef$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:50.730][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-09-20 16:01:50.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-09-20 16:01:50.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:50.733][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:50.742][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-09-20 16:01:50.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-09-20 16:01:50.744][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:50.745][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:50.746][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-09-20 16:01:50.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-09-20 16:01:50.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:50.749][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:50.750][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-09-20 16:01:50.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-09-20 16:01:50.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:50.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:50.754][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-09-20 16:01:50.755][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-09-20 16:01:50.756][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:50.757][ef$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:50.759][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-09-20 16:01:50.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-09-20 16:01:50.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:50.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:50.770][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-09-20 16:01:50.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-20 16:01:50.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:50.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:50.774][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-09-20 16:01:50.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-20 16:01:50.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:50.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:50.779][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-09-20 16:01:50.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-20 16:01:50.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:50.782][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:50.783][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-09-20 16:01:50.784][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-20 16:01:50.785][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:50.786][ef$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:50.787][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-09-20 16:01:50.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-20 16:01:50.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:50.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:50.798][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-20 16:01:50.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-20 16:01:50.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:50.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:50.803][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-20 16:01:50.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-20 16:01:50.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:50.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:50.807][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-20 16:01:50.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-20 16:01:50.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:50.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:50.811][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-20 16:01:50.812][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-20 16:01:50.813][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:50.814][ef$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:50.815][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-20 16:01:50.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-20 16:01:50.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:50.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:50.827][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-09-20 16:01:50.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-20 16:01:50.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:50.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:50.831][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-09-20 16:01:50.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-20 16:01:50.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:50.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:50.835][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-09-20 16:01:50.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-20 16:01:50.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:50.838][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:50.839][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-09-20 16:01:50.840][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-20 16:01:50.841][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:50.842][ef$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:50.843][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-09-20 16:01:50.844][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-20 16:01:50.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:50.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:50.855][ef$get] Asked field names are: accession.
biodb.TRACE[2025-09-20 16:01:50.856][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-20 16:01:50.857][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:50.858][ef$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:50.868][ef$get] Asked field names are: charge.
biodb.TRACE[2025-09-20 16:01:50.869][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-09-20 16:01:50.870][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:50.871][ef$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:50.875][ef$get] Asked field names are: formula.
biodb.TRACE[2025-09-20 16:01:50.876][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-20 16:01:50.877][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:50.878][ef$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:50.883][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-09-20 16:01:50.884][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-20 16:01:50.885][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:50.886][ef$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:50.890][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-20 16:01:50.891][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-20 16:01:50.892][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:50.893][ef$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:50.898][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-09-20 16:01:50.899][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-09-20 16:01:50.900][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:50.901][ef$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:50.905][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-20 16:01:50.906][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-20 16:01:50.907][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:50.908][ef$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:50.912][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-20 16:01:50.914][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-20 16:01:50.915][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:50.916][ef$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:50.920][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-09-20 16:01:50.921][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-09-20 16:01:50.922][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:50.923][ef$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:50.927][ef$get] Asked field names are: name.
biodb.TRACE[2025-09-20 16:01:50.928][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-09-20 16:01:50.929][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:50.930][ef$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:50.935][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-09-20 16:01:50.936][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-20 16:01:50.937][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:50.938][ef$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:50.942][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/bbs-3.21-bioc-longtests/meat/biodbChebi.Rcheck/biodbChebi/testref/entry-chebi-7799-content.xml".
biodb.DEBUG[2025-09-20 16:01:50.944][biodb$getFactory()$createEntryFromCo ...] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-09-20 16:01:50.945][biodb$getFactory()$createEntryFromCo ...] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-09-20 16:01:50.947][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-20 16:01:50.948][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-20 16:01:50.949][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-20 16:01:50.953][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-20 16:01:50.954][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-20 16:01:50.955][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-20 16:01:50.956][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-20 16:01:50.959][ef$get] Asked field names are: accession.
biodb.TRACE[2025-09-20 16:01:50.960][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-20 16:01:50.961][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:50.962][ef$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:50.963][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-20 16:01:50.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-20 16:01:50.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:50.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:50.967][ef$get] Asked field names are: charge.
biodb.TRACE[2025-09-20 16:01:50.968][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-09-20 16:01:50.969][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:50.970][ef$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:50.972][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-09-20 16:01:50.973][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-09-20 16:01:50.974][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:50.975][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:50.976][ef$get] Asked field names are: formula.
biodb.TRACE[2025-09-20 16:01:50.977][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-20 16:01:50.978][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:50.979][ef$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:50.981][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-09-20 16:01:50.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-20 16:01:50.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:50.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:50.985][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-09-20 16:01:50.986][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-20 16:01:50.987][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:50.988][ef$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:50.989][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-09-20 16:01:50.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-20 16:01:50.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:50.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:50.994][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-20 16:01:50.995][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-20 16:01:50.996][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:50.997][ef$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:50.998][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-20 16:01:50.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-20 16:01:51.000][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:51.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:51.003][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-09-20 16:01:51.004][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-09-20 16:01:51.005][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:51.006][ef$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:51.007][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-09-20 16:01:51.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-09-20 16:01:51.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:51.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:51.017][ef$get] Asked field names are: mass.
biodb.TRACE[2025-09-20 16:01:51.018][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-20 16:01:51.019][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:51.020][ef$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:51.022][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-09-20 16:01:51.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-20 16:01:51.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:51.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:51.026][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-20 16:01:51.027][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-20 16:01:51.028][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:51.029][ef$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:51.030][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-20 16:01:51.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-20 16:01:51.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:51.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:51.035][ef$get] Asked field names are: name.
biodb.TRACE[2025-09-20 16:01:51.036][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-09-20 16:01:51.037][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:51.038][ef$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:51.039][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-20 16:01:51.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-20 16:01:51.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:51.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:51.044][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-09-20 16:01:51.045][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-09-20 16:01:51.046][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:51.047][ef$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:51.048][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-09-20 16:01:51.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-09-20 16:01:51.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:51.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:51.053][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-09-20 16:01:51.054][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-20 16:01:51.055][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:51.056][ef$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:51.057][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-09-20 16:01:51.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-20 16:01:51.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:51.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:51.061][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-20 16:01:51.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-20 16:01:51.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:51.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:51.066][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-20 16:01:51.067][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-20 16:01:51.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:51.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:51.070][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-20 16:01:51.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-20 16:01:51.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:51.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:51.075][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-20 16:01:51.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-20 16:01:51.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:51.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:51.079][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-20 16:01:51.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-20 16:01:51.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:51.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:51.083][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-20 16:01:51.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-20 16:01:51.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:51.087][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:51.088][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-20 16:01:51.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-20 16:01:51.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:51.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:51.093][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-20 16:01:51.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-20 16:01:51.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:51.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:51.097][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-20 16:01:51.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-20 16:01:51.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:51.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:51.101][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-20 16:01:51.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-20 16:01:51.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:51.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-20 16:01:51.105][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 7799.
biodb.TRACE[2025-09-20 16:01:51.108][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-09-20 16:01:51.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-20 16:01:51.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:51.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:51.112][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-09-20 16:01:51.113][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-20 16:01:51.114][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:51.115][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:51.116][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-20 16:01:51.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-20 16:01:51.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:51.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:51.120][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-20 16:01:51.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-20 16:01:51.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:51.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:51.124][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-20 16:01:51.126][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-20 16:01:51.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:51.128][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:51.129][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-20 16:01:51.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-20 16:01:51.131][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:51.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:51.133][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-09-20 16:01:51.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-09-20 16:01:51.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:51.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:51.137][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-09-20 16:01:51.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-09-20 16:01:51.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:51.140][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:51.141][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2025-09-20 16:01:51.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-09-20 16:01:51.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:51.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:51.145][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-09-20 16:01:51.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-09-20 16:01:51.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:51.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:51.151][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-20 16:01:51.152][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-20 16:01:51.153][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:51.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:51.159][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-20 16:01:51.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-20 16:01:51.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:51.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:51.172][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-20 16:01:51.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-20 16:01:51.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:51.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:51.177][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-20 16:01:51.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-20 16:01:51.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:51.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:51.181][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-20 16:01:51.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-20 16:01:51.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:51.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:51.187][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-20 16:01:51.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-20 16:01:51.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:51.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:51.191][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-20 16:01:51.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-20 16:01:51.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:51.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:51.196][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-20 16:01:51.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-20 16:01:51.198][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:51.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:51.200][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-20 16:01:51.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-20 16:01:51.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:51.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:51.205][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-20 16:01:51.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-20 16:01:51.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:51.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:51.209][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-20 16:01:51.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-20 16:01:51.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:51.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:51.219][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-20 16:01:51.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-20 16:01:51.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:51.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:51.224][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-20 16:01:51.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-20 16:01:51.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:51.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:51.228][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-20 16:01:51.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-20 16:01:51.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:51.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:51.232][ef$get] Asked field names are: accession.
biodb.TRACE[2025-09-20 16:01:51.233][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-20 16:01:51.234][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:51.235][ef$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:51.236][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-20 16:01:51.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-20 16:01:51.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:51.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:51.249][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-09-20 16:01:51.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-20 16:01:51.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:51.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:51.253][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-09-20 16:01:51.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-20 16:01:51.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:51.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:51.257][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-09-20 16:01:51.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-20 16:01:51.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:51.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:51.261][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-09-20 16:01:51.263][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-20 16:01:51.264][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:51.265][ef$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:51.266][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-09-20 16:01:51.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-20 16:01:51.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:51.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:51.277][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-09-20 16:01:51.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-20 16:01:51.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:51.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:51.281][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-09-20 16:01:51.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-20 16:01:51.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:51.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:51.286][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-09-20 16:01:51.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-20 16:01:51.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:51.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:51.290][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-09-20 16:01:51.291][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-20 16:01:51.292][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:51.293][ef$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:51.294][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-09-20 16:01:51.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-20 16:01:51.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:51.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:51.305][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-20 16:01:51.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-20 16:01:51.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:51.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:51.310][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-20 16:01:51.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-20 16:01:51.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:51.313][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:51.314][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-20 16:01:51.320][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-20 16:01:51.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:51.322][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:51.323][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-20 16:01:51.324][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-20 16:01:51.325][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:51.326][ef$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:51.327][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-20 16:01:51.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-20 16:01:51.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:51.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:51.338][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-09-20 16:01:51.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-09-20 16:01:51.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:51.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:51.342][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-09-20 16:01:51.343][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-09-20 16:01:51.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:51.345][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:51.346][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-09-20 16:01:51.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-09-20 16:01:51.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:51.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:51.351][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-09-20 16:01:51.352][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-09-20 16:01:51.353][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:51.354][ef$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:51.355][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-09-20 16:01:51.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-09-20 16:01:51.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:51.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:51.366][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-20 16:01:51.367][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-20 16:01:51.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:51.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:51.370][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-20 16:01:51.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-20 16:01:51.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:51.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:51.374][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-20 16:01:51.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-20 16:01:51.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:51.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:51.379][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-20 16:01:51.380][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-20 16:01:51.381][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:51.382][ef$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:51.383][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-20 16:01:51.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-20 16:01:51.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:51.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:51.394][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-20 16:01:51.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-20 16:01:51.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:51.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:51.398][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-20 16:01:51.399][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-20 16:01:51.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:51.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:51.402][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-20 16:01:51.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-20 16:01:51.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:51.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:51.407][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-20 16:01:51.408][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-20 16:01:51.409][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:51.410][ef$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:51.411][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-20 16:01:51.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-20 16:01:51.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:51.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:51.422][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-09-20 16:01:51.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-09-20 16:01:51.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:51.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:51.426][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-09-20 16:01:51.427][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-09-20 16:01:51.428][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:51.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:51.430][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-09-20 16:01:51.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-09-20 16:01:51.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:51.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:51.434][ef$get] Asked field names are: charge.
biodb.TRACE[2025-09-20 16:01:51.435][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-09-20 16:01:51.436][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:51.437][ef$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:51.438][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-09-20 16:01:51.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-09-20 16:01:51.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:51.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:51.449][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-09-20 16:01:51.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-09-20 16:01:51.452][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:51.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:51.454][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-09-20 16:01:51.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-09-20 16:01:51.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:51.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:51.458][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-09-20 16:01:51.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-09-20 16:01:51.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:51.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:51.467][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-09-20 16:01:51.468][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-09-20 16:01:51.469][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:51.470][ef$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:51.471][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-09-20 16:01:51.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-09-20 16:01:51.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:51.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:51.482][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-20 16:01:51.483][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-20 16:01:51.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:51.485][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:51.486][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-20 16:01:51.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-20 16:01:51.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:51.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:51.491][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-20 16:01:51.492][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-20 16:01:51.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:51.494][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:51.495][ef$get] Asked field names are: name.
biodb.TRACE[2025-09-20 16:01:51.496][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-09-20 16:01:51.497][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:51.498][ef$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:51.499][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-20 16:01:51.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-20 16:01:51.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:51.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:51.510][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-09-20 16:01:51.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-20 16:01:51.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:51.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:51.514][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-09-20 16:01:51.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-20 16:01:51.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:51.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:51.519][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-09-20 16:01:51.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-20 16:01:51.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:51.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:51.523][ef$get] Asked field names are: formula.
biodb.TRACE[2025-09-20 16:01:51.524][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-20 16:01:51.525][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:51.526][ef$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:51.527][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-09-20 16:01:51.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-20 16:01:51.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:51.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:51.538][ef$get] Asked field names are: accession.
biodb.TRACE[2025-09-20 16:01:51.539][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-20 16:01:51.540][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:51.541][ef$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:51.546][ef$get] Asked field names are: charge.
biodb.TRACE[2025-09-20 16:01:51.547][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-09-20 16:01:51.548][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:51.549][ef$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:51.553][ef$get] Asked field names are: formula.
biodb.TRACE[2025-09-20 16:01:51.554][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-20 16:01:51.555][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:51.556][ef$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:51.560][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-09-20 16:01:51.561][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-20 16:01:51.562][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:51.563][ef$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:51.567][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-20 16:01:51.569][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-20 16:01:51.570][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:51.571][ef$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:51.575][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-09-20 16:01:51.576][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-09-20 16:01:51.577][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:51.578][ef$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:51.582][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-20 16:01:51.583][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-20 16:01:51.584][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:51.585][ef$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:51.589][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-20 16:01:51.590][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-20 16:01:51.591][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:51.592][ef$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:51.597][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-09-20 16:01:51.598][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-09-20 16:01:51.599][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:51.600][ef$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:51.609][ef$get] Asked field names are: name.
biodb.TRACE[2025-09-20 16:01:51.610][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-09-20 16:01:51.612][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:51.613][ef$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:51.617][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-09-20 16:01:51.618][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-20 16:01:51.620][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:51.621][ef$get] fields variable is a list.
biodb.INFO [2025-09-20 16:01:51.629][biodb::testThat]
biodb.INFO [2025-09-20 16:01:51.630][biodb::testThat] Running test function  test.rt.unit  (" RT unit is defined when there is an RT value. ").
biodb.INFO [2025-09-20 16:01:51.631][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-09-20 16:01:51.632][biodb::testThat]
biodb.DEBUG[2025-09-20 16:01:51.634][private$loadEntries] Creating entries from ids [3]: "15440, 2528, 7799".
biodb.DEBUG[2025-09-20 16:01:51.641][conn$getEntryContent] Get ChEBI entry content(s) for 3 id(s)...
biodb.TRACE[2025-09-20 16:01:51.645][cch$loadFileContent] Trying to load 3 files from cache: [3]: "15440, 2528, 7799".
biodb.TRACE[2025-09-20 16:01:51.647][cch$loadFileContent] file.exist = [3]: "TRUE, TRUE, TRUE".
biodb.TRACE[2025-09-20 16:01:51.649][loadFileContents] Loaded 3 files from cache: [3]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/15440.xml, /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/2528.xml, /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7799.xml".
biodb.DEBUG[2025-09-20 16:01:51.651][conn$getEntryContent] 3 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-09-20 16:01:51.652][self$createEntryFromContent] Creating ChEBI entries from 3 content(s).
biodb.DEBUG[2025-09-20 16:01:51.653][self$createEntryFromContent] Parsing 3 ChEBI entries.
biodb.DEBUG[2025-09-20 16:01:51.655][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-20 16:01:51.656][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-20 16:01:51.657][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-20 16:01:51.662][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-20 16:01:51.663][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-20 16:01:51.664][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-20 16:01:51.665][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-20 16:01:51.667][ef$get] Asked field names are: accession.
biodb.TRACE[2025-09-20 16:01:51.668][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-20 16:01:51.669][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:51.670][ef$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:51.672][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-20 16:01:51.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-20 16:01:51.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:51.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:51.676][ef$get] Asked field names are: charge.
biodb.TRACE[2025-09-20 16:01:51.677][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-09-20 16:01:51.678][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:51.679][ef$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:51.680][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-09-20 16:01:51.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-09-20 16:01:51.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:51.684][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:51.685][ef$get] Asked field names are: formula.
biodb.TRACE[2025-09-20 16:01:51.686][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-20 16:01:51.687][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:51.688][ef$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:51.689][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-09-20 16:01:51.690][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-20 16:01:51.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:51.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:51.694][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-09-20 16:01:51.695][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-20 16:01:51.696][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:51.697][ef$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:51.698][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-09-20 16:01:51.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-20 16:01:51.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:51.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:51.703][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-20 16:01:51.704][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-20 16:01:51.705][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:51.706][ef$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:51.707][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-20 16:01:51.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-20 16:01:51.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:51.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:51.711][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-09-20 16:01:51.712][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-09-20 16:01:51.713][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:51.714][ef$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:51.716][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-09-20 16:01:51.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-09-20 16:01:51.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:51.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:51.720][ef$get] Asked field names are: mass.
biodb.TRACE[2025-09-20 16:01:51.721][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-20 16:01:51.722][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:51.723][ef$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:51.724][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-09-20 16:01:51.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-20 16:01:51.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:51.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:51.729][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-20 16:01:51.730][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-20 16:01:51.731][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:51.732][ef$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:51.733][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-20 16:01:51.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-20 16:01:51.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:51.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:51.737][ef$get] Asked field names are: name.
biodb.TRACE[2025-09-20 16:01:51.738][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-09-20 16:01:51.739][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:51.740][ef$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:51.742][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-20 16:01:51.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-20 16:01:51.744][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:51.745][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:51.746][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-09-20 16:01:51.747][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-09-20 16:01:51.748][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:51.749][ef$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:51.751][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-09-20 16:01:51.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-09-20 16:01:51.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:51.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:51.755][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-09-20 16:01:51.756][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-20 16:01:51.757][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:51.758][ef$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:51.759][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-09-20 16:01:51.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-20 16:01:51.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:51.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:51.770][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-20 16:01:51.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-20 16:01:51.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:51.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:51.774][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-20 16:01:51.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-20 16:01:51.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:51.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:51.778][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-20 16:01:51.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-20 16:01:51.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:51.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:51.782][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-20 16:01:51.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-20 16:01:51.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:51.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:51.786][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-20 16:01:51.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-20 16:01:51.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:51.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:51.791][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-20 16:01:51.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-20 16:01:51.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:51.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:51.795][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-20 16:01:51.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-20 16:01:51.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:51.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-20 16:01:51.799][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-20 16:01:51.800][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-20 16:01:51.801][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-20 16:01:51.806][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-20 16:01:51.807][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-20 16:01:51.808][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-20 16:01:51.809][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-20 16:01:51.811][ef$get] Asked field names are: accession.
biodb.TRACE[2025-09-20 16:01:51.813][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-20 16:01:51.814][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:51.815][ef$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:51.816][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-20 16:01:51.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-20 16:01:51.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:51.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:51.820][ef$get] Asked field names are: charge.
biodb.TRACE[2025-09-20 16:01:51.821][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-09-20 16:01:51.822][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:51.823][ef$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:51.825][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-09-20 16:01:51.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-09-20 16:01:51.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:51.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:51.829][ef$get] Asked field names are: formula.
biodb.TRACE[2025-09-20 16:01:51.830][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-20 16:01:51.831][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:51.832][ef$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:51.834][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-09-20 16:01:51.835][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-20 16:01:51.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:51.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:51.838][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-09-20 16:01:51.839][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-20 16:01:51.840][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:51.841][ef$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:51.842][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-09-20 16:01:51.844][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-20 16:01:51.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:51.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:51.847][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-20 16:01:51.848][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-20 16:01:51.849][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:51.850][ef$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:51.851][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-20 16:01:51.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-20 16:01:51.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:51.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:51.855][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-09-20 16:01:51.856][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-09-20 16:01:51.857][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:51.858][ef$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:51.860][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-09-20 16:01:51.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-09-20 16:01:51.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:51.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:51.864][ef$get] Asked field names are: mass.
biodb.TRACE[2025-09-20 16:01:51.865][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-20 16:01:51.866][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:51.867][ef$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:51.868][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-09-20 16:01:51.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-20 16:01:51.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:51.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:51.872][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-20 16:01:51.874][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-20 16:01:51.875][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:51.876][ef$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:51.877][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-20 16:01:51.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-20 16:01:51.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:51.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:51.881][ef$get] Asked field names are: name.
biodb.TRACE[2025-09-20 16:01:51.882][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-09-20 16:01:51.883][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:51.884][ef$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:51.886][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-20 16:01:51.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-20 16:01:51.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:51.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:51.890][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-09-20 16:01:51.891][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-09-20 16:01:51.892][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:51.893][ef$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:51.894][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-09-20 16:01:51.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-09-20 16:01:51.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:51.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:51.898][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-09-20 16:01:51.900][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-20 16:01:51.901][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:51.902][ef$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:51.903][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-09-20 16:01:51.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-20 16:01:51.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:51.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:51.907][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-20 16:01:51.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-20 16:01:51.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:51.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:51.916][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-20 16:01:51.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-20 16:01:51.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:51.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:51.920][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-20 16:01:51.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-20 16:01:51.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:51.923][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:51.925][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-20 16:01:51.926][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-20 16:01:51.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:51.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:51.929][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-20 16:01:51.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-20 16:01:51.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:51.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:51.933][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-20 16:01:51.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-20 16:01:51.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:51.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:51.937][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-20 16:01:51.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-20 16:01:51.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:51.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-20 16:01:51.942][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-20 16:01:51.943][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-20 16:01:51.944][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-20 16:01:51.949][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-20 16:01:51.950][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-20 16:01:51.951][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-20 16:01:51.952][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-20 16:01:51.954][ef$get] Asked field names are: accession.
biodb.TRACE[2025-09-20 16:01:51.955][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-20 16:01:51.956][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:51.957][ef$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:51.958][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-20 16:01:51.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-20 16:01:51.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:51.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:51.963][ef$get] Asked field names are: charge.
biodb.TRACE[2025-09-20 16:01:51.964][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-09-20 16:01:51.965][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:51.966][ef$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:51.967][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-09-20 16:01:51.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-09-20 16:01:51.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:51.970][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:51.971][ef$get] Asked field names are: formula.
biodb.TRACE[2025-09-20 16:01:51.972][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-20 16:01:51.973][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:51.974][ef$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:51.976][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-09-20 16:01:51.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-20 16:01:51.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:51.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:51.980][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-09-20 16:01:51.981][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-20 16:01:51.982][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:51.983][ef$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:51.984][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-09-20 16:01:51.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-20 16:01:51.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:51.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:51.989][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-20 16:01:51.990][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-20 16:01:51.991][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:51.992][ef$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:51.993][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-20 16:01:51.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-20 16:01:51.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:51.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:51.997][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-09-20 16:01:51.998][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-09-20 16:01:51.999][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:52.000][ef$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:52.002][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-09-20 16:01:52.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-09-20 16:01:52.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:52.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:52.006][ef$get] Asked field names are: mass.
biodb.TRACE[2025-09-20 16:01:52.007][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-20 16:01:52.008][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:52.009][ef$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:52.010][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-09-20 16:01:52.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-20 16:01:52.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:52.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:52.015][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-20 16:01:52.016][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-20 16:01:52.017][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:52.018][ef$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:52.019][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-20 16:01:52.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-20 16:01:52.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:52.022][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:52.023][ef$get] Asked field names are: name.
biodb.TRACE[2025-09-20 16:01:52.024][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-09-20 16:01:52.026][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:52.027][ef$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:52.028][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-20 16:01:52.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-20 16:01:52.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:52.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:52.032][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-09-20 16:01:52.033][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-09-20 16:01:52.034][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:52.035][ef$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:52.037][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-09-20 16:01:52.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-09-20 16:01:52.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:52.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:52.041][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-09-20 16:01:52.042][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-20 16:01:52.043][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:52.044][ef$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:52.045][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-09-20 16:01:52.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-20 16:01:52.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:52.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:52.050][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-20 16:01:52.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-20 16:01:52.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:52.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:52.059][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-20 16:01:52.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-20 16:01:52.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:52.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:52.063][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-20 16:01:52.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-20 16:01:52.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:52.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:52.067][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-20 16:01:52.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-20 16:01:52.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:52.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:52.072][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-20 16:01:52.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-20 16:01:52.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:52.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:52.076][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-20 16:01:52.077][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-20 16:01:52.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:52.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:52.080][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-20 16:01:52.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-20 16:01:52.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:52.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:52.084][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-20 16:01:52.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-20 16:01:52.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:52.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:52.089][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-20 16:01:52.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-20 16:01:52.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:52.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:52.093][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-20 16:01:52.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-20 16:01:52.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:52.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:52.097][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-20 16:01:52.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-20 16:01:52.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:52.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:52.101][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-20 16:01:52.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-20 16:01:52.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:52.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:52.105][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-20 16:01:52.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-20 16:01:52.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:52.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:52.110][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-20 16:01:52.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-20 16:01:52.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:52.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:52.114][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-20 16:01:52.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-20 16:01:52.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:52.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:52.118][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-20 16:01:52.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-20 16:01:52.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:52.121][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-20 16:01:52.122][self$createEntryFromContent] Accession numbers: 15440, 2528, 7799.
biodb.TRACE[2025-09-20 16:01:52.124][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2025-09-20 16:01:52.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2025-09-20 16:01:52.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:52.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:52.128][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2025-09-20 16:01:52.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2025-09-20 16:01:52.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:52.131][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:52.132][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2025-09-20 16:01:52.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2025-09-20 16:01:52.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:52.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:52.140][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2025-09-20 16:01:52.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2025-09-20 16:01:52.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:52.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:52.145][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2025-09-20 16:01:52.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2025-09-20 16:01:52.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:52.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:52.149][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2025-09-20 16:01:52.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2025-09-20 16:01:52.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:52.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:52.157][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2025-09-20 16:01:52.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2025-09-20 16:01:52.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:52.160][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:52.161][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2025-09-20 16:01:52.162][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2025-09-20 16:01:52.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:52.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:52.165][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2025-09-20 16:01:52.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2025-09-20 16:01:52.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:52.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2025-09-20 16:01:52.176][biodb::testThat]
biodb.INFO [2025-09-20 16:01:52.177][biodb::testThat] Running test function  test.searchForEntries  (" We can search for an entry by searchable field ").
biodb.INFO [2025-09-20 16:01:52.178][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-09-20 16:01:52.179][biodb::testThat]
biodb.TRACE[2025-09-20 16:01:52.182][ef$get] Asked field names are: name.
biodb.TRACE[2025-09-20 16:01:52.183][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-09-20 16:01:52.184][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:52.185][ef$get] fields variable is a list.
biodb.DEBUG[2025-09-20 16:01:52.187][function(conn, opt)] Testing searchForEntries() with entry "15440" and field "name".
biodb.TRACE[2025-09-20 16:01:52.217][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-20 16:01:52.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-20 16:01:52.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:52.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:52.221][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-20 16:01:52.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-20 16:01:52.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:52.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:52.225][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-20 16:01:52.227][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-20 16:01:52.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:52.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-20 16:01:52.232][function(conn, opt)] With value "squalene".
biodb.DEBUG[2025-09-20 16:01:52.237][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/webservice?wsdl".
biodb.DEBUG[2025-09-20 16:01:52.258][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-09-20 16:01:52.275][cch$loadFileContent] Trying to load 1 files from cache: [1]: "1ad88a023c4ce2bc0629db4acebeee05".
biodb.TRACE[2025-09-20 16:01:52.276][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-09-20 16:01:52.278][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/1ad88a023c4ce2bc0629db4acebeee05.content".
biodb.DEBUG[2025-09-20 16:01:52.301][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-09-20 16:01:52.304][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-09-20 16:01:52.306][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b9623d99e42a57d0f12e83910c2ffbf2".
biodb.TRACE[2025-09-20 16:01:52.307][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-09-20 16:01:52.309][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b9623d99e42a57d0f12e83910c2ffbf2.content".
biodb.DEBUG[2025-09-20 16:01:52.311][function(conn, opt)] With found IDs [1]: "15440".
biodb.TRACE[2025-09-20 16:01:52.323][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-20 16:01:52.324][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-20 16:01:52.325][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:52.348][ef$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:52.349][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-20 16:01:52.351][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-20 16:01:52.352][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:52.353][ef$get] fields variable is a list.
biodb.INFO [2025-09-20 16:01:52.357][biodb::testThat]
biodb.INFO [2025-09-20 16:01:52.358][biodb::testThat] Running test function  test.searchByName  (" We can search for an entry by name. ").
biodb.INFO [2025-09-20 16:01:52.358][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-09-20 16:01:52.359][biodb::testThat]
biodb.TRACE[2025-09-20 16:01:52.384][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-20 16:01:52.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-20 16:01:52.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:52.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:52.388][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-20 16:01:52.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-20 16:01:52.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:52.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:52.393][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-20 16:01:52.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-20 16:01:52.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:52.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-20 16:01:52.452][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-09-20 16:01:52.455][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-09-20 16:01:52.457][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b9623d99e42a57d0f12e83910c2ffbf2".
biodb.TRACE[2025-09-20 16:01:52.458][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-09-20 16:01:52.459][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b9623d99e42a57d0f12e83910c2ffbf2.content".
biodb.INFO [2025-09-20 16:01:52.480][biodb::testThat]
biodb.INFO [2025-09-20 16:01:52.481][biodb::testThat] Running test function  testEntryLoading  (" We can load an entry from the database. ").
biodb.INFO [2025-09-20 16:01:52.482][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-09-20 16:01:52.483][biodb::testThat]
biodb.TRACE[2025-09-20 16:01:52.493][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-09-20 16:01:52.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-20 16:01:52.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:52.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:52.497][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-09-20 16:01:52.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-20 16:01:52.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:52.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:52.526][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-20 16:01:52.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-20 16:01:52.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:52.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:52.531][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-20 16:01:52.532][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-20 16:01:52.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:52.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:52.535][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-20 16:01:52.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-20 16:01:52.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:52.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:52.539][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-20 16:01:52.540][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-20 16:01:52.541][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:52.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:52.544][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-09-20 16:01:52.545][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-09-20 16:01:52.546][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:52.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:52.548][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-09-20 16:01:52.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-09-20 16:01:52.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:52.551][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:52.552][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2025-09-20 16:01:52.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-09-20 16:01:52.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:52.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:52.556][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-09-20 16:01:52.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-09-20 16:01:52.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:52.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:52.570][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-09-20 16:01:52.571][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-20 16:01:52.572][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:52.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:52.574][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-09-20 16:01:52.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-20 16:01:52.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:52.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:52.579][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-20 16:01:52.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-20 16:01:52.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:52.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:52.583][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-20 16:01:52.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-20 16:01:52.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:52.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:52.587][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-20 16:01:52.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-20 16:01:52.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:52.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:52.591][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-20 16:01:52.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-20 16:01:52.594][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:52.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:52.596][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-09-20 16:01:52.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-09-20 16:01:52.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:52.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:52.600][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-09-20 16:01:52.601][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-09-20 16:01:52.602][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:52.603][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:52.604][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2025-09-20 16:01:52.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-09-20 16:01:52.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:52.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:01:52.622][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-09-20 16:01:52.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-09-20 16:01:52.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:01:52.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2025-09-20 16:01:52.637][biodb::testThat]
biodb.INFO [2025-09-20 16:01:52.638][biodb::testThat] Running test function  test.entry.page.url  (" We can get a URL pointing to the entry page. ").
biodb.INFO [2025-09-20 16:01:52.639][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-09-20 16:01:52.640][biodb::testThat]
biodb.INFO [2025-09-20 16:01:52.651][biodb::testThat]
biodb.INFO [2025-09-20 16:01:52.652][biodb::testThat] Running test function  test.entry.image.url  (" We can get a URL pointing to the entry image. ").
biodb.INFO [2025-09-20 16:01:52.653][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-09-20 16:01:52.654][biodb::testThat]
biodb.INFO [2025-09-20 16:01:52.664][biodb::testThat]
biodb.INFO [2025-09-20 16:01:52.665][biodb::testThat] Running test function  test.entry.page.url.download  (" The entry page URL can be downloaded. ").
biodb.INFO [2025-09-20 16:01:52.666][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-09-20 16:01:52.667][biodb::testThat]
biodb.DEBUG[2025-09-20 16:01:52.670][function(conn, opt)] Trying to download "https://www.ebi.ac.uk/chebi/searchId.do?chebiId=15440".
biodb.DEBUG[2025-09-20 16:02:24.175][getUrlContent] Use RCurl for downloading content of URL https://www.ebi.ac.uk/chebi/searchId.do?chebiId=15440.
biodb.INFO [2025-09-20 16:02:24.542][biodb::testThat]
biodb.INFO [2025-09-20 16:02:24.544][biodb::testThat] Running test function  test.entry.image.url.download  (" The entry image URL can be downloaded. ").
biodb.INFO [2025-09-20 16:02:24.546][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-09-20 16:02:24.549][biodb::testThat]
biodb.DEBUG[2025-09-20 16:02:24.888][getUrlContent] Use base::url() for downloading content of URL https://www.ebi.ac.uk/chebi/displayImage.do?defaultImage=true&imageIndex=0&chebiId=15440&dimensions=400.
biodb.TRACE[2025-09-20 16:02:25.682][ef$get] Asked field names are: name.
biodb.TRACE[2025-09-20 16:02:25.684][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-09-20 16:02:25.685][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:25.686][ef$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:25.687][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-20 16:02:25.688][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-20 16:02:25.689][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:25.689][ef$get] fields variable is a list.
biodb.INFO [2025-09-20 16:02:25.691][biodb::testThat]
biodb.INFO [2025-09-20 16:02:25.692][biodb::testThat] Running test function  test.searchCompound  (" We can search for a compound ").
biodb.INFO [2025-09-20 16:02:25.693][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-09-20 16:02:25.694][biodb::testThat]
biodb.TRACE[2025-09-20 16:02:25.703][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-20 16:02:25.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-20 16:02:25.705][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:25.706][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:25.707][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-20 16:02:25.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-20 16:02:25.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:25.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:25.711][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-20 16:02:25.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-20 16:02:25.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:25.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-20 16:02:25.785][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-09-20 16:02:25.788][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-09-20 16:02:25.790][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b9623d99e42a57d0f12e83910c2ffbf2".
biodb.TRACE[2025-09-20 16:02:25.791][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-09-20 16:02:25.792][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b9623d99e42a57d0f12e83910c2ffbf2.content".
biodb.DEBUG[2025-09-20 16:02:25.854][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-09-20 16:02:25.858][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-09-20 16:02:25.859][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b9623d99e42a57d0f12e83910c2ffbf2".
biodb.TRACE[2025-09-20 16:02:25.860][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-09-20 16:02:25.861][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b9623d99e42a57d0f12e83910c2ffbf2.content".
biodb.TRACE[2025-09-20 16:02:25.873][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-09-20 16:02:25.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-09-20 16:02:25.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:25.876][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:25.880][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-20 16:02:25.881][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-20 16:02:25.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:25.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:25.884][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-20 16:02:25.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-20 16:02:25.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:25.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:25.888][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-20 16:02:25.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-20 16:02:25.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:25.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:25.892][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-20 16:02:25.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-20 16:02:25.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:25.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:25.896][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-20 16:02:25.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-20 16:02:25.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:25.899][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-20 16:02:25.905][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.72*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-09-20 16:02:25.908][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-09-20 16:02:25.910][cch$loadFileContent] Trying to load 1 files from cache: [1]: "dabc9e8530050c4ceebbaec76743bcf1".
biodb.TRACE[2025-09-20 16:02:25.911][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-09-20 16:02:25.917][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/dabc9e8530050c4ceebbaec76743bcf1.content".
biodb.DEBUG[2025-09-20 16:02:25.919][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-20 16:02:25.920][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-20 16:02:25.921][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-20 16:02:25.925][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-20 16:02:25.925][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-20 16:02:25.926][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-20 16:02:25.927][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-20 16:02:25.928][private$loadEntries] Creating entries from ids [1]: "192288".
biodb.DEBUG[2025-09-20 16:02:25.972][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-09-20 16:02:25.974][cch$loadFileContent] Trying to load 1 files from cache: [1]: "192288".
biodb.TRACE[2025-09-20 16:02:25.975][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-09-20 16:02:25.976][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/192288.xml".
biodb.DEBUG[2025-09-20 16:02:25.977][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-09-20 16:02:25.978][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-09-20 16:02:25.979][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-09-20 16:02:25.981][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-20 16:02:25.982][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-20 16:02:25.983][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-20 16:02:25.987][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-20 16:02:25.988][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-20 16:02:25.989][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-20 16:02:25.990][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-20 16:02:25.991][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-20 16:02:25.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-20 16:02:25.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:25.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:25.999][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-20 16:02:26.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-20 16:02:26.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:26.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:26.003][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-20 16:02:26.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-20 16:02:26.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:26.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:26.007][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-20 16:02:26.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-20 16:02:26.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:26.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:26.011][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-20 16:02:26.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-20 16:02:26.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:26.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:26.015][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-20 16:02:26.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-20 16:02:26.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:26.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:26.019][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-20 16:02:26.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-20 16:02:26.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:26.022][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:26.023][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-20 16:02:26.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-20 16:02:26.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:26.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-20 16:02:26.026][self$createEntryFromContent] Accession numbers: NA.
biodb.DEBUG[2025-09-20 16:02:26.027][self$createEntryFromContent] Found 1 entry/ies without an accession number. Set it/them to NULL.
biodb.DEBUG[2025-09-20 16:02:26.037][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.73*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-09-20 16:02:26.040][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-09-20 16:02:26.042][cch$loadFileContent] Trying to load 1 files from cache: [1]: "41b7f9723242a79cfe14bebd91dbb5b6".
biodb.TRACE[2025-09-20 16:02:26.043][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-09-20 16:02:26.044][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/41b7f9723242a79cfe14bebd91dbb5b6.content".
biodb.DEBUG[2025-09-20 16:02:26.059][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-20 16:02:26.059][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-20 16:02:26.060][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-20 16:02:26.065][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-20 16:02:26.065][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-20 16:02:26.066][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-20 16:02:26.067][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-20 16:02:26.068][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-20 16:02:26.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-20 16:02:26.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:26.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:26.072][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-20 16:02:26.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-20 16:02:26.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:26.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:26.076][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-20 16:02:26.077][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-20 16:02:26.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:26.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-20 16:02:26.084][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-20 16:02:26.085][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-20 16:02:26.086][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-20 16:02:26.090][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-20 16:02:26.091][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-20 16:02:26.092][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-20 16:02:26.093][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-20 16:02:26.094][private$loadEntries] Creating entries from ids [1]: "209892".
biodb.DEBUG[2025-09-20 16:02:26.095][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-09-20 16:02:26.096][cch$loadFileContent] Trying to load 1 files from cache: [1]: "209892".
biodb.TRACE[2025-09-20 16:02:26.097][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-09-20 16:02:26.099][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/209892.xml".
biodb.DEBUG[2025-09-20 16:02:26.100][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-09-20 16:02:26.101][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-09-20 16:02:26.102][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-09-20 16:02:26.104][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-20 16:02:26.104][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-20 16:02:26.105][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-20 16:02:26.109][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-20 16:02:26.110][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-20 16:02:26.111][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-20 16:02:26.112][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-20 16:02:26.114][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-20 16:02:26.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-20 16:02:26.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:26.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:26.118][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-20 16:02:26.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-20 16:02:26.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:26.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:26.121][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-20 16:02:26.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-20 16:02:26.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:26.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:26.125][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-20 16:02:26.126][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-20 16:02:26.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:26.128][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:26.129][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-20 16:02:26.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-20 16:02:26.131][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:26.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:26.133][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-20 16:02:26.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-20 16:02:26.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:26.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:26.137][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-20 16:02:26.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-20 16:02:26.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:26.140][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:26.141][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-20 16:02:26.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-20 16:02:26.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:26.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-20 16:02:26.144][self$createEntryFromContent] Accession numbers: NA.
biodb.DEBUG[2025-09-20 16:02:26.145][self$createEntryFromContent] Found 1 entry/ies without an accession number. Set it/them to NULL.
biodb.DEBUG[2025-09-20 16:02:26.146][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-20 16:02:26.147][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-20 16:02:26.148][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-20 16:02:26.152][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-20 16:02:26.153][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-20 16:02:26.154][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-20 16:02:26.155][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-20 16:02:26.156][private$loadEntries] Creating entries from ids [1]: "227078".
biodb.DEBUG[2025-09-20 16:02:26.157][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-09-20 16:02:26.158][cch$loadFileContent] Trying to load 1 files from cache: [1]: "227078".
biodb.TRACE[2025-09-20 16:02:26.160][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-09-20 16:02:26.161][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/227078.xml".
biodb.DEBUG[2025-09-20 16:02:26.162][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-09-20 16:02:26.163][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-09-20 16:02:26.164][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-09-20 16:02:26.166][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-20 16:02:26.167][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-20 16:02:26.167][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-20 16:02:26.172][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-20 16:02:26.176][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-20 16:02:26.177][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-20 16:02:26.178][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-20 16:02:26.180][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-20 16:02:26.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-20 16:02:26.182][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:26.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:26.184][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-20 16:02:26.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-20 16:02:26.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:26.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:26.187][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-20 16:02:26.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-20 16:02:26.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:26.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:26.191][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-20 16:02:26.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-20 16:02:26.193][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:26.194][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:26.195][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-20 16:02:26.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-20 16:02:26.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:26.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:26.199][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-20 16:02:26.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-20 16:02:26.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:26.202][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:26.203][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-20 16:02:26.204][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-20 16:02:26.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:26.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:26.207][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-20 16:02:26.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-20 16:02:26.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:26.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-20 16:02:26.210][self$createEntryFromContent] Accession numbers: NA.
biodb.DEBUG[2025-09-20 16:02:26.211][self$createEntryFromContent] Found 1 entry/ies without an accession number. Set it/them to NULL.
biodb.DEBUG[2025-09-20 16:02:26.213][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.74*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-09-20 16:02:26.216][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-09-20 16:02:26.217][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-09-20 16:02:26.219][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.74%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2025-09-20 16:02:26.597][doesRCurlRequestUrlExist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.74%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL does not exist.
biodb.TRACE[2025-09-20 16:02:26.599][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2025-09-20 16:02:26.601][getUrlRequestResult] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.74%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2025-09-20 16:02:26.603][getBaseUrlRequestResult] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.74%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
biodb.INFO [2025-09-20 16:02:27.051][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.74%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL". Retrying connection to server...
biodb.DEBUG[2025-09-20 16:02:27.054][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-09-20 16:02:27.056][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-09-20 16:02:27.090][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.74%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2025-09-20 16:02:27.425][doesRCurlRequestUrlExist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.74%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL does not exist.
biodb.TRACE[2025-09-20 16:02:27.427][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2025-09-20 16:02:27.429][getUrlRequestResult] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.74%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2025-09-20 16:02:27.431][getBaseUrlRequestResult] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.74%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
biodb.INFO [2025-09-20 16:02:28.401][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.74%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL". Retrying connection to server...
biodb.DEBUG[2025-09-20 16:02:28.404][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-09-20 16:02:28.406][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-09-20 16:02:28.410][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.74%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2025-09-20 16:02:28.745][doesRCurlRequestUrlExist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.74%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL does not exist.
biodb.TRACE[2025-09-20 16:02:28.747][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2025-09-20 16:02:28.750][getUrlRequestResult] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.74%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2025-09-20 16:02:28.753][getBaseUrlRequestResult] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.74%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
biodb.INFO [2025-09-20 16:02:29.218][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.74%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL". Retrying connection to server...
biodb.DEBUG[2025-09-20 16:02:29.222][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-09-20 16:02:29.225][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-09-20 16:02:29.230][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.74%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2025-09-20 16:02:29.579][doesRCurlRequestUrlExist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.74%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL does not exist.
biodb.TRACE[2025-09-20 16:02:29.581][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2025-09-20 16:02:29.583][getUrlRequestResult] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.74%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2025-09-20 16:02:29.584][getBaseUrlRequestResult] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.74%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
biodb.INFO [2025-09-20 16:02:30.129][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.74%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL". Retrying connection to server...
biodb.DEBUG[2025-09-20 16:02:30.133][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-09-20 16:02:30.135][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-09-20 16:02:30.140][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.74%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2025-09-20 16:02:30.477][doesRCurlRequestUrlExist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.74%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL does not exist.
biodb.TRACE[2025-09-20 16:02:30.480][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2025-09-20 16:02:30.483][getUrlRequestResult] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.74%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2025-09-20 16:02:30.487][getBaseUrlRequestResult] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.74%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
biodb.INFO [2025-09-20 16:02:31.059][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.74%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL". Retrying connection to server...
biodb.DEBUG[2025-09-20 16:02:31.062][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-09-20 16:02:31.065][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-09-20 16:02:31.069][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.74%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2025-09-20 16:02:31.520][doesRCurlRequestUrlExist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.74%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL does not exist.
biodb.TRACE[2025-09-20 16:02:31.522][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2025-09-20 16:02:31.526][getUrlRequestResult] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.74%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2025-09-20 16:02:31.529][getBaseUrlRequestResult] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.74%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
biodb.INFO [2025-09-20 16:02:32.039][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.74%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL". Retrying connection to server...
biodb.DEBUG[2025-09-20 16:02:32.042][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-09-20 16:02:32.044][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-09-20 16:02:32.049][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.74%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2025-09-20 16:02:32.385][doesRCurlRequestUrlExist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.74%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL does not exist.
biodb.TRACE[2025-09-20 16:02:32.388][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2025-09-20 16:02:32.391][getUrlRequestResult] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.74%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2025-09-20 16:02:32.395][getBaseUrlRequestResult] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.74%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
biodb.INFO [2025-09-20 16:02:32.839][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.74%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL". Retrying connection to server...
biodb.DEBUG[2025-09-20 16:02:32.841][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-09-20 16:02:32.844][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-09-20 16:02:32.849][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.74%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2025-09-20 16:02:33.189][doesRCurlRequestUrlExist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.74%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL does not exist.
biodb.TRACE[2025-09-20 16:02:33.191][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2025-09-20 16:02:33.195][getUrlRequestResult] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.74%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2025-09-20 16:02:33.199][getBaseUrlRequestResult] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.74%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
biodb.INFO [2025-09-20 16:02:33.644][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.74%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL". Retrying connection to server...
biodb.DEBUG[2025-09-20 16:02:33.647][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-09-20 16:02:33.649][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-09-20 16:02:33.654][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.74%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2025-09-20 16:02:34.020][doesRCurlRequestUrlExist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.74%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL does not exist.
biodb.TRACE[2025-09-20 16:02:34.022][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2025-09-20 16:02:34.024][getUrlRequestResult] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.74%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2025-09-20 16:02:34.027][getBaseUrlRequestResult] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.74%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
biodb.INFO [2025-09-20 16:02:34.479][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.74%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL". Retrying connection to server...
biodb.DEBUG[2025-09-20 16:02:34.482][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-09-20 16:02:34.484][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-09-20 16:02:34.489][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.74%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2025-09-20 16:02:34.827][doesRCurlRequestUrlExist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.74%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL does not exist.
biodb.TRACE[2025-09-20 16:02:34.829][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2025-09-20 16:02:34.833][getUrlRequestResult] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.74%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2025-09-20 16:02:34.836][getBaseUrlRequestResult] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.74%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
biodb.INFO [2025-09-20 16:02:35.279][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.74%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL". Retrying connection to server...
biodb.INFO [2025-09-20 16:02:35.344][biodb::testThat]
biodb.INFO [2025-09-20 16:02:35.345][biodb::testThat] Running test function  test_annotateMzValues_input_vector  (" annotateMzValues() accepts a single vector. ").
biodb.INFO [2025-09-20 16:02:35.346][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-09-20 16:02:35.347][biodb::testThat]
biodb.TRACE[2025-09-20 16:02:35.351][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-09-20 16:02:35.352][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-09-20 16:02:35.353][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:35.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:35.355][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-09-20 16:02:35.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-09-20 16:02:35.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:35.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:35.359][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-09-20 16:02:35.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-09-20 16:02:35.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:35.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:35.363][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-20 16:02:35.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-20 16:02:35.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:35.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:35.367][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-20 16:02:35.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-20 16:02:35.369][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:35.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:35.371][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-20 16:02:35.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-20 16:02:35.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:35.374][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:35.375][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-20 16:02:35.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-20 16:02:35.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:35.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:35.379][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-20 16:02:35.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-20 16:02:35.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:35.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:35.382][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-20 16:02:35.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-20 16:02:35.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:35.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:35.386][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-20 16:02:35.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-20 16:02:35.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:35.389][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:35.390][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-20 16:02:35.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-20 16:02:35.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:35.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:35.394][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-20 16:02:35.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-20 16:02:35.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:35.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:35.398][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-20 16:02:35.399][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-20 16:02:35.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:35.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:35.402][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-20 16:02:35.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-20 16:02:35.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:35.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:35.406][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-20 16:02:35.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-20 16:02:35.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:35.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-20 16:02:35.412][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-20 16:02:35.413][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-20 16:02:35.414][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-20 16:02:35.422][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-20 16:02:35.423][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-20 16:02:35.424][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-20 16:02:35.425][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-20 16:02:35.447][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.72*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-09-20 16:02:35.451][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-09-20 16:02:35.452][cch$loadFileContent] Trying to load 1 files from cache: [1]: "dabc9e8530050c4ceebbaec76743bcf1".
biodb.TRACE[2025-09-20 16:02:35.453][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-09-20 16:02:35.454][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/dabc9e8530050c4ceebbaec76743bcf1.content".
biodb.DEBUG[2025-09-20 16:02:35.457][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-20 16:02:35.457][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-20 16:02:35.458][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-20 16:02:35.463][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-20 16:02:35.464][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-20 16:02:35.464][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-20 16:02:35.465][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-20 16:02:35.467][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.73*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-09-20 16:02:35.470][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-09-20 16:02:35.471][cch$loadFileContent] Trying to load 1 files from cache: [1]: "41b7f9723242a79cfe14bebd91dbb5b6".
biodb.TRACE[2025-09-20 16:02:35.472][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-09-20 16:02:35.473][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/41b7f9723242a79cfe14bebd91dbb5b6.content".
biodb.DEBUG[2025-09-20 16:02:35.476][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-20 16:02:35.476][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-20 16:02:35.477][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-20 16:02:35.481][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-20 16:02:35.482][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-20 16:02:35.483][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-20 16:02:35.484][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-20 16:02:35.485][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-20 16:02:35.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-20 16:02:35.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:35.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:35.489][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-20 16:02:35.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-20 16:02:35.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:35.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:35.493][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-20 16:02:35.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-20 16:02:35.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:35.495][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-20 16:02:35.496][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-20 16:02:35.497][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-20 16:02:35.498][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-20 16:02:35.506][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-20 16:02:35.507][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-20 16:02:35.508][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-20 16:02:35.509][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-20 16:02:35.510][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-20 16:02:35.511][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-20 16:02:35.512][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-20 16:02:35.516][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-20 16:02:35.517][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-20 16:02:35.517][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-20 16:02:35.518][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-20 16:02:35.520][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.74*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-09-20 16:02:35.535][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-09-20 16:02:35.536][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-09-20 16:02:35.538][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.74%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2025-09-20 16:02:35.870][doesRCurlRequestUrlExist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.74%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL does not exist.
biodb.TRACE[2025-09-20 16:02:35.872][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2025-09-20 16:02:35.874][getUrlRequestResult] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.74%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2025-09-20 16:02:35.877][getBaseUrlRequestResult] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.74%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
biodb.INFO [2025-09-20 16:02:36.602][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.74%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL". Retrying connection to server...
biodb.DEBUG[2025-09-20 16:02:36.606][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-09-20 16:02:36.608][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-09-20 16:02:36.612][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.74%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2025-09-20 16:02:37.277][doesRCurlRequestUrlExist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.74%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL does not exist.
biodb.TRACE[2025-09-20 16:02:37.278][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2025-09-20 16:02:37.280][getUrlRequestResult] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.74%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2025-09-20 16:02:37.281][getBaseUrlRequestResult] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.74%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
biodb.INFO [2025-09-20 16:02:37.765][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.74%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL". Retrying connection to server...
biodb.DEBUG[2025-09-20 16:02:37.768][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-09-20 16:02:37.771][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-09-20 16:02:37.775][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.74%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2025-09-20 16:02:38.252][doesRCurlRequestUrlExist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.74%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL does not exist.
biodb.TRACE[2025-09-20 16:02:38.254][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2025-09-20 16:02:38.258][getUrlRequestResult] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.74%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2025-09-20 16:02:38.261][getBaseUrlRequestResult] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.74%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
biodb.INFO [2025-09-20 16:02:38.704][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.74%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL". Retrying connection to server...
biodb.DEBUG[2025-09-20 16:02:38.706][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-09-20 16:02:38.707][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-09-20 16:02:38.710][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.74%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2025-09-20 16:02:39.487][doesRCurlRequestUrlExist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.74%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL does not exist.
biodb.TRACE[2025-09-20 16:02:39.488][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2025-09-20 16:02:39.490][getUrlRequestResult] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.74%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2025-09-20 16:02:39.492][getBaseUrlRequestResult] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.74%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
biodb.INFO [2025-09-20 16:02:40.527][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.74%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL". Retrying connection to server...
biodb.DEBUG[2025-09-20 16:02:40.530][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-09-20 16:02:40.532][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-09-20 16:02:40.537][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.74%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2025-09-20 16:02:40.903][doesRCurlRequestUrlExist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.74%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL does not exist.
biodb.TRACE[2025-09-20 16:02:40.905][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2025-09-20 16:02:40.908][getUrlRequestResult] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.74%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2025-09-20 16:02:40.912][getBaseUrlRequestResult] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.74%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
biodb.INFO [2025-09-20 16:02:41.557][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.74%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL". Retrying connection to server...
biodb.DEBUG[2025-09-20 16:02:41.559][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-09-20 16:02:41.561][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-09-20 16:02:41.563][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.74%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2025-09-20 16:03:05.089][doesRCurlRequestUrlExist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.74%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL does not exist.
biodb.TRACE[2025-09-20 16:03:05.091][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2025-09-20 16:03:05.095][getUrlRequestResult] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.74%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2025-09-20 16:03:05.099][getBaseUrlRequestResult] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.74%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
biodb.INFO [2025-09-20 16:04:05.568][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.74%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL". Retrying connection to server...
biodb.DEBUG[2025-09-20 16:04:05.571][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-09-20 16:04:05.573][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-09-20 16:04:05.578][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.74%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2025-09-20 16:04:18.005][doesRCurlRequestUrlExist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.74%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL does not exist.
biodb.TRACE[2025-09-20 16:04:18.008][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2025-09-20 16:04:18.012][getUrlRequestResult] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.74%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2025-09-20 16:04:18.015][getBaseUrlRequestResult] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.74%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
biodb.INFO [2025-09-20 16:04:36.569][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.74%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL". Retrying connection to server...
biodb.DEBUG[2025-09-20 16:04:36.572][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-09-20 16:04:36.574][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-09-20 16:04:36.579][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.74%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2025-09-20 16:04:47.610][doesRCurlRequestUrlExist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.74%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL does not exist.
biodb.TRACE[2025-09-20 16:04:47.613][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2025-09-20 16:04:47.617][getUrlRequestResult] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.74%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2025-09-20 16:04:47.620][getBaseUrlRequestResult] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.74%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
biodb.INFO [2025-09-20 16:04:49.594][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.74%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL". Retrying connection to server...
biodb.DEBUG[2025-09-20 16:04:49.597][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-09-20 16:04:49.599][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-09-20 16:04:49.604][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.74%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2025-09-20 16:04:50.111][doesRCurlRequestUrlExist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.74%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL does not exist.
biodb.TRACE[2025-09-20 16:04:50.113][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2025-09-20 16:04:50.117][getUrlRequestResult] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.74%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2025-09-20 16:04:50.120][getBaseUrlRequestResult] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.74%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
biodb.INFO [2025-09-20 16:04:50.668][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.74%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL". Retrying connection to server...
biodb.DEBUG[2025-09-20 16:04:50.671][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-09-20 16:04:50.673][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-09-20 16:04:50.678][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.74%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2025-09-20 16:04:51.050][doesRCurlRequestUrlExist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.74%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL does not exist.
biodb.TRACE[2025-09-20 16:04:51.052][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2025-09-20 16:04:51.055][getUrlRequestResult] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.74%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2025-09-20 16:04:51.058][getBaseUrlRequestResult] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.74%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
biodb.INFO [2025-09-20 16:04:51.507][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.74%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL". Retrying connection to server...
biodb.INFO [2025-09-20 16:04:51.537][biodb::testThat]
biodb.INFO [2025-09-20 16:04:51.540][biodb::testThat] Running test function  test_annotateMzValues_ppm_tol  (" ppm tolerance works in annotateMzValues() ").
biodb.INFO [2025-09-20 16:04:51.542][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-09-20 16:04:51.544][biodb::testThat]
biodb.TRACE[2025-09-20 16:04:51.550][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-09-20 16:04:51.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-09-20 16:04:51.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:04:51.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:04:51.557][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-09-20 16:04:51.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-09-20 16:04:51.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:04:51.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:04:51.563][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-09-20 16:04:51.565][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-09-20 16:04:51.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:04:51.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:04:51.569][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-20 16:04:51.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-20 16:04:51.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:04:51.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:04:51.583][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-20 16:04:51.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-20 16:04:51.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:04:51.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:04:51.587][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-20 16:04:51.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-20 16:04:51.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:04:51.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:04:51.591][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-20 16:04:51.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-20 16:04:51.594][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:04:51.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:04:51.596][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-20 16:04:51.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-20 16:04:51.597][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:04:51.598][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:04:51.599][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-20 16:04:51.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-20 16:04:51.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:04:51.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:04:51.603][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-20 16:04:51.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-20 16:04:51.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:04:51.606][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:04:51.607][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-20 16:04:51.608][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-20 16:04:51.609][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:04:51.610][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:04:51.611][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-20 16:04:51.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-20 16:04:51.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:04:51.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:04:51.615][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-20 16:04:51.616][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-20 16:04:51.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:04:51.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:04:51.619][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-20 16:04:51.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-20 16:04:51.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:04:51.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:04:51.623][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-20 16:04:51.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-20 16:04:51.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:04:51.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-20 16:04:51.683][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-20 16:04:51.684][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-20 16:04:51.685][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-20 16:04:51.689][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-20 16:04:51.690][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-20 16:04:51.691][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-20 16:04:51.692][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-20 16:04:51.694][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.72*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-09-20 16:04:51.697][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-09-20 16:04:51.699][cch$loadFileContent] Trying to load 1 files from cache: [1]: "dabc9e8530050c4ceebbaec76743bcf1".
biodb.TRACE[2025-09-20 16:04:51.700][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-09-20 16:04:51.701][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/dabc9e8530050c4ceebbaec76743bcf1.content".
biodb.DEBUG[2025-09-20 16:04:51.704][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-20 16:04:51.705][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-20 16:04:51.706][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-20 16:04:51.710][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-20 16:04:51.711][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-20 16:04:51.712][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-20 16:04:51.713][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-20 16:04:51.714][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.73*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-09-20 16:04:51.717][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-09-20 16:04:51.719][cch$loadFileContent] Trying to load 1 files from cache: [1]: "41b7f9723242a79cfe14bebd91dbb5b6".
biodb.TRACE[2025-09-20 16:04:51.720][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-09-20 16:04:51.721][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/41b7f9723242a79cfe14bebd91dbb5b6.content".
biodb.DEBUG[2025-09-20 16:04:51.723][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-20 16:04:51.724][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-20 16:04:51.725][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-20 16:04:51.729][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-20 16:04:51.730][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-20 16:04:51.731][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-20 16:04:51.732][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-20 16:04:51.733][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-20 16:04:51.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-20 16:04:51.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:04:51.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:04:51.737][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-20 16:04:51.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-20 16:04:51.739][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:04:51.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:04:51.740][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-20 16:04:51.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-20 16:04:51.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:04:51.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-20 16:04:51.748][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-20 16:04:51.749][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-20 16:04:51.750][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-20 16:04:51.754][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-20 16:04:51.755][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-20 16:04:51.756][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-20 16:04:51.757][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-20 16:04:51.758][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-20 16:04:51.759][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-20 16:04:51.760][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-20 16:04:51.764][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-20 16:04:51.764][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-20 16:04:51.765][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-20 16:04:51.766][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-20 16:04:51.768][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.74*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-09-20 16:04:51.771][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-09-20 16:04:51.772][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-09-20 16:04:51.774][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.74%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2025-09-20 16:04:52.127][doesRCurlRequestUrlExist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.74%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL does not exist.
biodb.TRACE[2025-09-20 16:04:52.128][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2025-09-20 16:04:52.131][getUrlRequestResult] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.74%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2025-09-20 16:04:52.134][getBaseUrlRequestResult] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.74%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
biodb.INFO [2025-09-20 16:04:53.486][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.74%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL". Retrying connection to server...
biodb.DEBUG[2025-09-20 16:04:53.488][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-09-20 16:04:53.490][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-09-20 16:04:53.492][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.74%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2025-09-20 16:04:53.849][doesRCurlRequestUrlExist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.74%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL does not exist.
biodb.TRACE[2025-09-20 16:04:53.852][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2025-09-20 16:04:53.855][getUrlRequestResult] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.74%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2025-09-20 16:04:53.858][getBaseUrlRequestResult] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.74%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
biodb.INFO [2025-09-20 16:04:54.343][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.74%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL". Retrying connection to server...
biodb.DEBUG[2025-09-20 16:04:54.344][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-09-20 16:04:54.345][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-09-20 16:04:54.347][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.74%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2025-09-20 16:04:54.679][doesRCurlRequestUrlExist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.74%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL does not exist.
biodb.TRACE[2025-09-20 16:04:54.681][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2025-09-20 16:04:54.685][getUrlRequestResult] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.74%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2025-09-20 16:04:54.688][getBaseUrlRequestResult] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.74%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
biodb.INFO [2025-09-20 16:04:55.121][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.74%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL". Retrying connection to server...
biodb.DEBUG[2025-09-20 16:04:55.124][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-09-20 16:04:55.127][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-09-20 16:04:55.131][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.74%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2025-09-20 16:04:55.501][doesRCurlRequestUrlExist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.74%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL does not exist.
biodb.TRACE[2025-09-20 16:04:55.504][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2025-09-20 16:04:55.507][getUrlRequestResult] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.74%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2025-09-20 16:04:55.511][getBaseUrlRequestResult] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.74%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
biodb.INFO [2025-09-20 16:04:56.051][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.74%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL". Retrying connection to server...
biodb.DEBUG[2025-09-20 16:04:56.054][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-09-20 16:04:56.057][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-09-20 16:04:56.061][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.74%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2025-09-20 16:04:56.407][doesRCurlRequestUrlExist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.74%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL does not exist.
biodb.TRACE[2025-09-20 16:04:56.409][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2025-09-20 16:04:56.412][getUrlRequestResult] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.74%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2025-09-20 16:04:56.415][getBaseUrlRequestResult] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.74%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
biodb.INFO [2025-09-20 16:04:56.859][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.74%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL". Retrying connection to server...
biodb.DEBUG[2025-09-20 16:04:56.862][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-09-20 16:04:56.865][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-09-20 16:04:56.869][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.74%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2025-09-20 16:04:57.207][doesRCurlRequestUrlExist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.74%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL does not exist.
biodb.TRACE[2025-09-20 16:04:57.208][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2025-09-20 16:04:57.211][getUrlRequestResult] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.74%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2025-09-20 16:04:57.214][getBaseUrlRequestResult] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.74%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
biodb.INFO [2025-09-20 16:04:57.715][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.74%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL". Retrying connection to server...
biodb.DEBUG[2025-09-20 16:04:57.717][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-09-20 16:04:57.718][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-09-20 16:04:57.721][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.74%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2025-09-20 16:04:58.051][doesRCurlRequestUrlExist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.74%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL does not exist.
biodb.TRACE[2025-09-20 16:04:58.052][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2025-09-20 16:04:58.054][getUrlRequestResult] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.74%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2025-09-20 16:04:58.055][getBaseUrlRequestResult] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.74%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
biodb.INFO [2025-09-20 16:04:58.591][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.74%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL". Retrying connection to server...
biodb.DEBUG[2025-09-20 16:04:58.592][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-09-20 16:04:58.594][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-09-20 16:04:58.596][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.74%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2025-09-20 16:04:58.927][doesRCurlRequestUrlExist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.74%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL does not exist.
biodb.TRACE[2025-09-20 16:04:58.928][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2025-09-20 16:04:58.930][getUrlRequestResult] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.74%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2025-09-20 16:04:58.931][getBaseUrlRequestResult] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.74%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
biodb.INFO [2025-09-20 16:04:59.482][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.74%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL". Retrying connection to server...
biodb.DEBUG[2025-09-20 16:04:59.483][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-09-20 16:04:59.484][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-09-20 16:04:59.486][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.74%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2025-09-20 16:04:59.833][doesRCurlRequestUrlExist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.74%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL does not exist.
biodb.TRACE[2025-09-20 16:04:59.835][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2025-09-20 16:04:59.836][getUrlRequestResult] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.74%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2025-09-20 16:04:59.838][getBaseUrlRequestResult] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.74%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
biodb.INFO [2025-09-20 16:05:00.487][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.74%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL". Retrying connection to server...
biodb.DEBUG[2025-09-20 16:05:00.489][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-09-20 16:05:00.490][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-09-20 16:05:00.492][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.74%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2025-09-20 16:05:00.849][doesRCurlRequestUrlExist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.74%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL does not exist.
biodb.TRACE[2025-09-20 16:05:00.850][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2025-09-20 16:05:00.851][getUrlRequestResult] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.74%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2025-09-20 16:05:00.853][getBaseUrlRequestResult] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.74%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
biodb.INFO [2025-09-20 16:05:01.508][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.74%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL". Retrying connection to server...
biodb.INFO [2025-09-20 16:05:01.539][biodb::testThat]
biodb.INFO [2025-09-20 16:05:01.541][biodb::testThat] Running test function  test_annotateMzValues_input_dataframe_untouched  (" Input data frame is not modified by annotateMzValues() ").
biodb.INFO [2025-09-20 16:05:01.543][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-09-20 16:05:01.545][biodb::testThat]
biodb.TRACE[2025-09-20 16:05:01.551][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-09-20 16:05:01.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-09-20 16:05:01.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:05:01.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:05:01.558][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-09-20 16:05:01.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-09-20 16:05:01.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:05:01.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:05:01.564][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-09-20 16:05:01.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-09-20 16:05:01.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:05:01.569][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:05:01.570][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-20 16:05:01.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-20 16:05:01.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:05:01.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:05:01.575][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-20 16:05:01.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-20 16:05:01.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:05:01.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:05:01.580][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-20 16:05:01.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-20 16:05:01.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:05:01.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:05:01.585][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-20 16:05:01.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-20 16:05:01.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:05:01.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:05:01.594][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-20 16:05:01.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-20 16:05:01.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:05:01.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:05:01.598][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-20 16:05:01.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-20 16:05:01.600][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:05:01.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:05:01.602][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-20 16:05:01.603][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-20 16:05:01.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:05:01.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:05:01.606][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-20 16:05:01.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-20 16:05:01.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:05:01.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:05:01.610][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-20 16:05:01.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-20 16:05:01.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:05:01.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:05:01.614][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-20 16:05:01.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-20 16:05:01.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:05:01.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:05:01.618][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-20 16:05:01.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-20 16:05:01.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:05:01.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:05:01.621][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-20 16:05:01.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-20 16:05:01.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:05:01.624][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-20 16:05:01.629][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-20 16:05:01.630][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-20 16:05:01.631][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-20 16:05:01.635][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-20 16:05:01.636][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-20 16:05:01.637][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-20 16:05:01.638][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-20 16:05:01.641][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.72*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-09-20 16:05:01.644][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-09-20 16:05:01.645][cch$loadFileContent] Trying to load 1 files from cache: [1]: "dabc9e8530050c4ceebbaec76743bcf1".
biodb.TRACE[2025-09-20 16:05:01.646][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-09-20 16:05:01.647][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/dabc9e8530050c4ceebbaec76743bcf1.content".
biodb.DEBUG[2025-09-20 16:05:01.650][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-20 16:05:01.651][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-20 16:05:01.652][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-20 16:05:01.656][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-20 16:05:01.657][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-20 16:05:01.658][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-20 16:05:01.659][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-20 16:05:01.660][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.73*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-09-20 16:05:01.663][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-09-20 16:05:01.665][cch$loadFileContent] Trying to load 1 files from cache: [1]: "41b7f9723242a79cfe14bebd91dbb5b6".
biodb.TRACE[2025-09-20 16:05:01.666][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-09-20 16:05:01.667][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/41b7f9723242a79cfe14bebd91dbb5b6.content".
biodb.DEBUG[2025-09-20 16:05:01.669][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-20 16:05:01.670][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-20 16:05:01.671][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-20 16:05:01.675][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-20 16:05:01.676][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-20 16:05:01.677][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-20 16:05:01.678][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-20 16:05:01.679][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-20 16:05:01.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-20 16:05:01.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:05:01.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:05:01.687][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-20 16:05:01.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-20 16:05:01.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:05:01.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:05:01.691][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-20 16:05:01.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-20 16:05:01.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:05:01.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-20 16:05:01.695][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-20 16:05:01.696][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-20 16:05:01.696][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-20 16:05:01.700][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-20 16:05:01.701][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-20 16:05:01.702][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-20 16:05:01.703][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-20 16:05:01.704][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-20 16:05:01.705][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-20 16:05:01.706][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-20 16:05:01.710][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-20 16:05:01.711][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-20 16:05:01.712][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-20 16:05:01.712][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-20 16:05:01.714][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.74*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-09-20 16:05:01.717][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-09-20 16:05:01.718][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-09-20 16:05:01.720][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.74%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2025-09-20 16:05:02.304][doesRCurlRequestUrlExist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.74%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL does not exist.
biodb.TRACE[2025-09-20 16:05:02.306][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2025-09-20 16:05:02.309][getUrlRequestResult] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.74%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2025-09-20 16:05:02.312][getBaseUrlRequestResult] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.74%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
biodb.INFO [2025-09-20 16:05:03.168][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.74%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL". Retrying connection to server...
biodb.DEBUG[2025-09-20 16:05:03.171][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-09-20 16:05:03.173][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-09-20 16:05:03.178][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.74%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2025-09-20 16:05:03.515][doesRCurlRequestUrlExist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.74%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL does not exist.
biodb.TRACE[2025-09-20 16:05:03.517][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2025-09-20 16:05:03.520][getUrlRequestResult] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.74%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2025-09-20 16:05:03.523][getBaseUrlRequestResult] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.74%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
biodb.INFO [2025-09-20 16:05:03.998][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.74%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL". Retrying connection to server...
biodb.DEBUG[2025-09-20 16:05:04.001][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-09-20 16:05:04.003][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-09-20 16:05:04.007][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.74%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2025-09-20 16:05:04.343][doesRCurlRequestUrlExist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.74%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL does not exist.
biodb.TRACE[2025-09-20 16:05:04.346][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2025-09-20 16:05:04.349][getUrlRequestResult] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.74%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2025-09-20 16:05:04.352][getBaseUrlRequestResult] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.74%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
biodb.INFO [2025-09-20 16:05:04.795][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.74%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL". Retrying connection to server...
biodb.DEBUG[2025-09-20 16:05:04.797][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-09-20 16:05:04.799][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-09-20 16:05:04.803][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.74%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2025-09-20 16:05:05.161][doesRCurlRequestUrlExist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.74%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL does not exist.
biodb.TRACE[2025-09-20 16:05:05.163][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2025-09-20 16:05:05.166][getUrlRequestResult] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.74%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2025-09-20 16:05:05.168][getBaseUrlRequestResult] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.74%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
biodb.INFO [2025-09-20 16:05:05.610][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.74%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL". Retrying connection to server...
biodb.DEBUG[2025-09-20 16:05:05.612][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-09-20 16:05:05.614][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-09-20 16:05:05.618][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.74%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2025-09-20 16:05:05.963][doesRCurlRequestUrlExist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.74%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL does not exist.
biodb.TRACE[2025-09-20 16:05:05.965][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2025-09-20 16:05:05.968][getUrlRequestResult] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.74%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2025-09-20 16:05:05.972][getBaseUrlRequestResult] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.74%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
biodb.INFO [2025-09-20 16:05:06.431][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.74%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL". Retrying connection to server...
biodb.DEBUG[2025-09-20 16:05:06.433][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-09-20 16:05:06.436][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-09-20 16:05:06.440][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.74%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2025-09-20 16:05:06.794][doesRCurlRequestUrlExist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.74%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL does not exist.
biodb.TRACE[2025-09-20 16:05:06.796][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2025-09-20 16:05:06.799][getUrlRequestResult] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.74%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2025-09-20 16:05:06.803][getBaseUrlRequestResult] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.74%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
biodb.INFO [2025-09-20 16:05:07.247][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.74%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL". Retrying connection to server...
biodb.DEBUG[2025-09-20 16:05:07.249][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-09-20 16:05:07.252][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-09-20 16:05:07.256][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.74%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2025-09-20 16:05:07.592][doesRCurlRequestUrlExist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.74%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL does not exist.
biodb.TRACE[2025-09-20 16:05:07.594][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2025-09-20 16:05:07.597][getUrlRequestResult] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.74%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2025-09-20 16:05:07.601][getBaseUrlRequestResult] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.74%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
biodb.INFO [2025-09-20 16:05:08.058][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.74%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL". Retrying connection to server...
biodb.DEBUG[2025-09-20 16:05:08.060][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-09-20 16:05:08.062][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-09-20 16:05:08.067][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.74%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2025-09-20 16:05:08.404][doesRCurlRequestUrlExist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.74%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL does not exist.
biodb.TRACE[2025-09-20 16:05:08.406][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2025-09-20 16:05:08.409][getUrlRequestResult] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.74%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2025-09-20 16:05:08.412][getBaseUrlRequestResult] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.74%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
biodb.INFO [2025-09-20 16:05:08.857][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.74%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL". Retrying connection to server...
biodb.DEBUG[2025-09-20 16:05:08.859][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-09-20 16:05:08.861][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-09-20 16:05:08.866][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.74%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2025-09-20 16:05:09.208][doesRCurlRequestUrlExist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.74%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL does not exist.
biodb.TRACE[2025-09-20 16:05:09.212][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2025-09-20 16:05:09.216][getUrlRequestResult] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.74%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2025-09-20 16:05:09.220][getBaseUrlRequestResult] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.74%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
biodb.INFO [2025-09-20 16:05:09.671][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.74%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL". Retrying connection to server...
biodb.DEBUG[2025-09-20 16:05:09.673][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-09-20 16:05:09.675][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-09-20 16:05:09.679][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.74%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2025-09-20 16:05:10.014][doesRCurlRequestUrlExist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.74%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL does not exist.
biodb.TRACE[2025-09-20 16:05:10.015][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2025-09-20 16:05:10.018][getUrlRequestResult] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.74%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2025-09-20 16:05:10.020][getBaseUrlRequestResult] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.74%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
biodb.INFO [2025-09-20 16:05:10.463][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.74%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL". Retrying connection to server...
biodb.TRACE[2025-09-20 16:05:10.501][ef$get] Asked field names are: name.
biodb.TRACE[2025-09-20 16:05:10.504][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-09-20 16:05:10.506][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:05:10.508][ef$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:05:10.510][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-20 16:05:10.512][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-20 16:05:10.514][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:05:10.516][ef$get] fields variable is a list.
biodb.INFO [2025-09-20 16:05:10.519][biodb::testThat]
biodb.INFO [2025-09-20 16:05:10.520][biodb::testThat] Running test function  test.annotateMzValues_real_values  (" annotateMzValues() works correctly with real values. ").
biodb.INFO [2025-09-20 16:05:10.522][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-09-20 16:05:10.523][biodb::testThat]
biodb.TRACE[2025-09-20 16:05:10.528][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-09-20 16:05:10.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-09-20 16:05:10.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:05:10.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:05:10.534][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-09-20 16:05:10.535][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-09-20 16:05:10.536][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:05:10.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:05:10.539][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-09-20 16:05:10.540][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-09-20 16:05:10.541][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:05:10.543][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:05:10.706][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-20 16:05:10.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-20 16:05:10.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:05:10.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:05:10.710][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-20 16:05:10.711][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-20 16:05:10.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:05:10.713][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:05:10.714][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-20 16:05:10.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-20 16:05:10.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:05:10.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:05:10.718][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-20 16:05:10.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-20 16:05:10.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:05:10.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:05:10.722][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-20 16:05:10.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-20 16:05:10.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:05:10.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:05:10.725][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-20 16:05:10.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-20 16:05:10.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:05:10.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:05:10.729][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-20 16:05:10.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-20 16:05:10.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:05:10.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:05:10.733][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-20 16:05:10.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-20 16:05:10.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:05:10.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:05:10.736][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-20 16:05:10.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-20 16:05:10.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:05:10.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:05:10.740][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-20 16:05:10.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-20 16:05:10.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:05:10.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:05:10.744][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-20 16:05:10.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-20 16:05:10.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:05:10.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:05:10.748][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-20 16:05:10.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-20 16:05:10.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:05:10.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-20 16:05:10.754][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-20 16:05:10.754][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-20 16:05:10.755][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-20 16:05:10.759][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-20 16:05:10.760][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-20 16:05:10.761][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-20 16:05:10.762][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-20 16:05:10.765][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-09-20 16:05:10.767][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-09-20 16:05:10.768][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-09-20 16:05:10.770][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2025-09-20 16:05:11.098][doesRCurlRequestUrlExist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL does not exist.
biodb.TRACE[2025-09-20 16:05:11.100][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2025-09-20 16:05:11.101][getUrlRequestResult] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2025-09-20 16:05:11.103][getBaseUrlRequestResult] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
biodb.INFO [2025-09-20 16:05:11.639][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL". Retrying connection to server...
biodb.DEBUG[2025-09-20 16:05:11.642][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-09-20 16:05:11.644][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-09-20 16:05:11.649][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2025-09-20 16:05:11.982][doesRCurlRequestUrlExist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL does not exist.
biodb.TRACE[2025-09-20 16:05:11.984][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2025-09-20 16:05:11.985][getUrlRequestResult] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2025-09-20 16:05:11.987][getBaseUrlRequestResult] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
biodb.INFO [2025-09-20 16:05:12.516][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL". Retrying connection to server...
biodb.DEBUG[2025-09-20 16:05:12.517][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-09-20 16:05:12.518][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-09-20 16:05:12.520][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2025-09-20 16:05:12.850][doesRCurlRequestUrlExist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL does not exist.
biodb.TRACE[2025-09-20 16:05:12.852][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2025-09-20 16:05:12.855][getUrlRequestResult] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2025-09-20 16:05:12.857][getBaseUrlRequestResult] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
biodb.INFO [2025-09-20 16:05:13.299][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL". Retrying connection to server...
biodb.DEBUG[2025-09-20 16:05:13.302][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-09-20 16:05:13.304][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-09-20 16:05:13.309][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2025-09-20 16:05:13.643][doesRCurlRequestUrlExist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL does not exist.
biodb.TRACE[2025-09-20 16:05:13.645][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2025-09-20 16:05:13.648][getUrlRequestResult] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2025-09-20 16:05:13.651][getBaseUrlRequestResult] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
biodb.INFO [2025-09-20 16:05:14.094][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL". Retrying connection to server...
biodb.DEBUG[2025-09-20 16:05:14.097][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-09-20 16:05:14.099][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-09-20 16:05:14.104][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2025-09-20 16:05:14.439][doesRCurlRequestUrlExist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL does not exist.
biodb.TRACE[2025-09-20 16:05:14.441][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2025-09-20 16:05:14.444][getUrlRequestResult] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2025-09-20 16:05:14.446][getBaseUrlRequestResult] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
biodb.INFO [2025-09-20 16:05:14.890][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL". Retrying connection to server...
biodb.DEBUG[2025-09-20 16:05:14.893][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-09-20 16:05:14.896][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-09-20 16:05:14.901][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2025-09-20 16:05:15.238][doesRCurlRequestUrlExist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL does not exist.
biodb.TRACE[2025-09-20 16:05:15.240][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2025-09-20 16:05:15.242][getUrlRequestResult] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2025-09-20 16:05:15.244][getBaseUrlRequestResult] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
biodb.INFO [2025-09-20 16:05:15.774][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL". Retrying connection to server...
biodb.DEBUG[2025-09-20 16:05:15.775][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-09-20 16:05:15.776][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-09-20 16:05:15.779][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2025-09-20 16:05:16.135][doesRCurlRequestUrlExist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL does not exist.
biodb.TRACE[2025-09-20 16:05:16.137][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2025-09-20 16:05:16.140][getUrlRequestResult] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2025-09-20 16:05:16.143][getBaseUrlRequestResult] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
biodb.INFO [2025-09-20 16:05:16.588][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL". Retrying connection to server...
biodb.DEBUG[2025-09-20 16:05:16.591][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-09-20 16:05:16.594][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-09-20 16:05:16.599][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2025-09-20 16:05:16.938][doesRCurlRequestUrlExist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL does not exist.
biodb.TRACE[2025-09-20 16:05:16.940][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2025-09-20 16:05:16.944][getUrlRequestResult] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2025-09-20 16:05:16.948][getBaseUrlRequestResult] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
biodb.INFO [2025-09-20 16:05:17.391][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL". Retrying connection to server...
biodb.DEBUG[2025-09-20 16:05:17.394][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-09-20 16:05:17.397][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-09-20 16:05:17.402][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2025-09-20 16:05:17.741][doesRCurlRequestUrlExist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL does not exist.
biodb.TRACE[2025-09-20 16:05:17.744][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2025-09-20 16:05:17.748][getUrlRequestResult] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2025-09-20 16:05:17.752][getBaseUrlRequestResult] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
biodb.INFO [2025-09-20 16:05:18.197][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL". Retrying connection to server...
biodb.DEBUG[2025-09-20 16:05:18.200][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-09-20 16:05:18.203][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-09-20 16:05:18.208][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2025-09-20 16:05:18.545][doesRCurlRequestUrlExist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL does not exist.
biodb.TRACE[2025-09-20 16:05:18.548][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2025-09-20 16:05:18.552][getUrlRequestResult] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2025-09-20 16:05:18.555][getBaseUrlRequestResult] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
biodb.INFO [2025-09-20 16:05:19.000][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL". Retrying connection to server...
biodb.INFO [2025-09-20 16:05:19.035][biodb::testThat]
biodb.INFO [2025-09-20 16:05:19.038][biodb::testThat] Running test function  test_annotateMzValues_additional_fields  (" Additional fields are accepted in annotateMzValues() ").
biodb.INFO [2025-09-20 16:05:19.040][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-09-20 16:05:19.042][biodb::testThat]
biodb.TRACE[2025-09-20 16:05:19.048][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-09-20 16:05:19.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-09-20 16:05:19.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:05:19.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:05:19.055][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-09-20 16:05:19.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-09-20 16:05:19.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:05:19.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:05:19.062][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-09-20 16:05:19.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-09-20 16:05:19.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:05:19.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:05:19.069][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-20 16:05:19.070][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-20 16:05:19.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:05:19.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:05:19.074][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-20 16:05:19.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-20 16:05:19.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:05:19.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:05:19.079][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-20 16:05:19.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-20 16:05:19.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:05:19.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:05:19.084][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-20 16:05:19.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-20 16:05:19.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:05:19.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:05:19.089][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-20 16:05:19.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-20 16:05:19.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:05:19.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:05:19.093][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-20 16:05:19.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-20 16:05:19.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:05:19.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:05:19.098][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-20 16:05:19.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-20 16:05:19.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:05:19.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:05:19.102][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-20 16:05:19.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-20 16:05:19.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:05:19.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:05:19.106][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-20 16:05:19.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-20 16:05:19.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:05:19.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:05:19.111][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-20 16:05:19.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-20 16:05:19.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:05:19.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:05:19.115][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-20 16:05:19.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-20 16:05:19.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:05:19.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:05:19.120][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-20 16:05:19.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-20 16:05:19.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:05:19.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-20 16:05:19.127][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-20 16:05:19.128][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-20 16:05:19.129][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-20 16:05:19.133][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-20 16:05:19.134][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-20 16:05:19.135][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-20 16:05:19.136][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-20 16:05:19.139][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.72*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-09-20 16:05:19.143][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-09-20 16:05:19.144][cch$loadFileContent] Trying to load 1 files from cache: [1]: "dabc9e8530050c4ceebbaec76743bcf1".
biodb.TRACE[2025-09-20 16:05:19.145][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-09-20 16:05:19.147][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/dabc9e8530050c4ceebbaec76743bcf1.content".
biodb.DEBUG[2025-09-20 16:05:19.149][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-20 16:05:19.150][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-20 16:05:19.151][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-20 16:05:19.156][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-20 16:05:19.157][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-20 16:05:19.158][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-20 16:05:19.159][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-20 16:05:19.161][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.73*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-09-20 16:05:19.164][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-09-20 16:05:19.166][cch$loadFileContent] Trying to load 1 files from cache: [1]: "41b7f9723242a79cfe14bebd91dbb5b6".
biodb.TRACE[2025-09-20 16:05:19.167][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-09-20 16:05:19.168][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/41b7f9723242a79cfe14bebd91dbb5b6.content".
biodb.DEBUG[2025-09-20 16:05:19.171][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-20 16:05:19.172][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-20 16:05:19.173][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-20 16:05:19.177][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-20 16:05:19.178][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-20 16:05:19.179][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-20 16:05:19.180][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-20 16:05:19.182][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-20 16:05:19.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-20 16:05:19.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:05:19.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:05:19.186][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-20 16:05:19.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-20 16:05:19.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:05:19.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:05:19.190][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-20 16:05:19.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-20 16:05:19.193][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:05:19.194][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-20 16:05:19.195][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-20 16:05:19.196][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-20 16:05:19.197][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-20 16:05:19.202][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-20 16:05:19.203][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-20 16:05:19.204][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-20 16:05:19.205][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-20 16:05:19.206][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-20 16:05:19.207][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-20 16:05:19.208][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-20 16:05:19.213][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-20 16:05:19.214][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-20 16:05:19.215][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-20 16:05:19.216][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-20 16:05:19.218][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.74*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-09-20 16:05:19.221][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-09-20 16:05:19.222][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-09-20 16:05:19.224][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.74%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2025-09-20 16:05:19.556][doesRCurlRequestUrlExist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.74%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL does not exist.
biodb.TRACE[2025-09-20 16:05:19.559][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2025-09-20 16:05:19.562][getUrlRequestResult] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.74%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2025-09-20 16:05:19.572][getBaseUrlRequestResult] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.74%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
biodb.INFO [2025-09-20 16:05:20.017][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.74%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL". Retrying connection to server...
biodb.DEBUG[2025-09-20 16:05:20.019][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-09-20 16:05:20.022][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-09-20 16:05:20.026][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.74%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2025-09-20 16:05:20.388][doesRCurlRequestUrlExist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.74%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL does not exist.
biodb.TRACE[2025-09-20 16:05:20.391][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2025-09-20 16:05:20.394][getUrlRequestResult] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.74%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2025-09-20 16:05:20.397][getBaseUrlRequestResult] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.74%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
biodb.INFO [2025-09-20 16:05:20.844][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.74%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL". Retrying connection to server...
biodb.DEBUG[2025-09-20 16:05:20.847][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-09-20 16:05:20.850][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-09-20 16:05:20.855][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.74%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2025-09-20 16:05:21.644][doesRCurlRequestUrlExist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.74%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL does not exist.
biodb.TRACE[2025-09-20 16:05:21.646][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2025-09-20 16:05:21.648][getUrlRequestResult] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.74%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2025-09-20 16:05:21.651][getBaseUrlRequestResult] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.74%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
biodb.INFO [2025-09-20 16:05:22.217][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.74%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL". Retrying connection to server...
biodb.DEBUG[2025-09-20 16:05:22.220][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-09-20 16:05:22.222][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-09-20 16:05:22.227][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.74%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2025-09-20 16:05:22.563][doesRCurlRequestUrlExist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.74%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL does not exist.
biodb.TRACE[2025-09-20 16:05:22.565][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2025-09-20 16:05:22.568][getUrlRequestResult] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.74%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2025-09-20 16:05:22.571][getBaseUrlRequestResult] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.74%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
biodb.INFO [2025-09-20 16:05:23.016][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.74%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL". Retrying connection to server...
biodb.DEBUG[2025-09-20 16:05:23.019][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-09-20 16:05:23.021][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-09-20 16:05:23.026][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.74%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2025-09-20 16:05:23.362][doesRCurlRequestUrlExist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.74%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL does not exist.
biodb.TRACE[2025-09-20 16:05:23.365][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2025-09-20 16:05:23.368][getUrlRequestResult] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.74%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2025-09-20 16:05:23.372][getBaseUrlRequestResult] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.74%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
biodb.INFO [2025-09-20 16:05:28.331][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.74%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL". Retrying connection to server...
biodb.DEBUG[2025-09-20 16:05:28.334][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-09-20 16:05:28.337][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-09-20 16:05:28.341][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.74%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2025-09-20 16:05:54.999][doesRCurlRequestUrlExist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.74%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL does not exist.
biodb.TRACE[2025-09-20 16:05:55.001][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2025-09-20 16:05:55.004][getUrlRequestResult] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.74%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2025-09-20 16:05:55.007][getBaseUrlRequestResult] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.74%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
biodb.INFO [2025-09-20 16:06:29.782][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.74%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL". Retrying connection to server...
biodb.DEBUG[2025-09-20 16:06:29.785][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-09-20 16:06:29.788][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-09-20 16:06:29.793][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.74%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2025-09-20 16:06:30.139][doesRCurlRequestUrlExist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.74%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL does not exist.
biodb.TRACE[2025-09-20 16:06:30.143][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2025-09-20 16:06:30.147][getUrlRequestResult] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.74%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2025-09-20 16:06:30.151][getBaseUrlRequestResult] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.74%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
biodb.INFO [2025-09-20 16:06:30.741][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.74%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL". Retrying connection to server...
biodb.DEBUG[2025-09-20 16:06:30.744][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-09-20 16:06:30.746][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-09-20 16:06:30.752][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.74%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2025-09-20 16:06:31.088][doesRCurlRequestUrlExist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.74%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL does not exist.
biodb.TRACE[2025-09-20 16:06:31.090][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2025-09-20 16:06:31.094][getUrlRequestResult] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.74%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2025-09-20 16:06:31.098][getBaseUrlRequestResult] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.74%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
biodb.INFO [2025-09-20 16:06:31.864][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.74%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL". Retrying connection to server...
biodb.DEBUG[2025-09-20 16:06:31.867][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-09-20 16:06:31.870][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-09-20 16:06:31.874][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.74%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2025-09-20 16:06:32.212][doesRCurlRequestUrlExist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.74%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL does not exist.
biodb.TRACE[2025-09-20 16:06:32.214][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2025-09-20 16:06:32.218][getUrlRequestResult] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.74%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2025-09-20 16:06:32.221][getBaseUrlRequestResult] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.74%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
biodb.INFO [2025-09-20 16:06:32.667][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.74%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL". Retrying connection to server...
biodb.DEBUG[2025-09-20 16:06:32.670][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-09-20 16:06:32.673][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-09-20 16:06:32.678][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.74%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2025-09-20 16:06:33.015][doesRCurlRequestUrlExist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.74%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL does not exist.
biodb.TRACE[2025-09-20 16:06:33.018][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2025-09-20 16:06:33.022][getUrlRequestResult] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.74%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2025-09-20 16:06:33.025][getBaseUrlRequestResult] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.74%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
biodb.INFO [2025-09-20 16:06:33.470][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.74%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL". Retrying connection to server...
biodb.INFO [2025-09-20 16:06:33.508][biodb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2025-09-20 16:06:33.512][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector chebi from the request scheduler
biodb.INFO [2025-09-20 16:06:33.514][self$deleteConn] Connector "chebi" deleted.
biodb.DEBUG[2025-09-20 16:06:33.516][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2025-09-20 16:06:33.518][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-20 16:06:33.520][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-20 16:06:33.521][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-20 16:06:33.523][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-20 16:06:33.525][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2025-09-20 16:06:33.526][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
[ FAIL 7 | WARN 0 | SKIP 0 | PASS 273 ]

══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test_long_100_generic.R:17:1'): The entry image URL can be downloaded. ──
Error in `charToRaw(content)`: argument must be a character vector of length 1
Backtrace:
    ▆
 1. ├─base::do.call(fct, params)
 2. └─biodb (local) `<fn>`(conn = `<ChebiCnn>`, opt = `<named list>`)
 3.   └─biodb:::getUrlContent(url, binary = TRUE)
 4.     └─biodb:::getBaseUrlContent(u, binary = binary)
 5.       └─base::charToRaw(content)
── Error ('test_long_100_generic.R:17:1'): We can search for a compound ────────
Error in `if (file == "" || length(file) == 0) stop("empty or no content specified")`: missing value where TRUE/FALSE needed
Backtrace:
    ▆
 1. ├─base::do.call(fct, params)
 2. └─biodb (local) `<fn>`(db = `<ChebiCnn>`, opt = `<named list>`)
 3.   └─db$searchCompound(...)
 4.     └─self$searchForEntries(fields, max.results = max.results)
 5.       └─private$doSearchForEntries(fields = fields, max.results = max.results)
 6.         └─private$searchByMass(...)
 7.           └─self$wsGetLiteEntity(...)
 8.             └─XML::xmlInternalTreeParse(results, asText = TRUE)
── Error ('test_long_100_generic.R:17:1'): annotateMzValues() accepts a single vector. ──
Error in `if (file == "" || length(file) == 0) stop("empty or no content specified")`: missing value where TRUE/FALSE needed
Backtrace:
    ▆
 1. ├─base::do.call(fct, params)
 2. └─biodb (local) `<fn>`(conn = `<ChebiCnn>`, opt = `<named list>`)
 3.   └─conn$annotateMzValues(...)
 4.     └─self$searchForEntries(fieldsFilter, max.results = max.results)
 5.       └─private$doSearchForEntries(fields = fields, max.results = max.results)
 6.         └─private$searchByMass(...)
 7.           └─self$wsGetLiteEntity(...)
 8.             └─XML::xmlInternalTreeParse(results, asText = TRUE)
── Error ('test_long_100_generic.R:17:1'): ppm tolerance works in annotateMzValues() ──
Error in `if (file == "" || length(file) == 0) stop("empty or no content specified")`: missing value where TRUE/FALSE needed
Backtrace:
    ▆
 1. ├─base::do.call(fct, params)
 2. └─biodb (local) `<fn>`(conn = `<ChebiCnn>`, opt = `<named list>`)
 3.   └─conn$annotateMzValues(...)
 4.     └─self$searchForEntries(fieldsFilter, max.results = max.results)
 5.       └─private$doSearchForEntries(fields = fields, max.results = max.results)
 6.         └─private$searchByMass(...)
 7.           └─self$wsGetLiteEntity(...)
 8.             └─XML::xmlInternalTreeParse(results, asText = TRUE)
── Error ('test_long_100_generic.R:17:1'): Input data frame is not modified by annotateMzValues() ──
Error in `if (file == "" || length(file) == 0) stop("empty or no content specified")`: missing value where TRUE/FALSE needed
Backtrace:
    ▆
 1. ├─base::do.call(fct, params)
 2. └─biodb (local) `<fn>`(conn = `<ChebiCnn>`, opt = `<named list>`)
 3.   └─conn$annotateMzValues(...)
 4.     └─self$searchForEntries(fieldsFilter, max.results = max.results)
 5.       └─private$doSearchForEntries(fields = fields, max.results = max.results)
 6.         └─private$searchByMass(...)
 7.           └─self$wsGetLiteEntity(...)
 8.             └─XML::xmlInternalTreeParse(results, asText = TRUE)
── Error ('test_long_100_generic.R:17:1'): annotateMzValues() works correctly with real values. ──
Error in `if (file == "" || length(file) == 0) stop("empty or no content specified")`: missing value where TRUE/FALSE needed
Backtrace:
    ▆
 1. ├─base::do.call(fct, params)
 2. └─biodb (local) `<fn>`(conn = `<ChebiCnn>`, opt = `<named list>`)
 3.   └─conn$annotateMzValues(...)
 4.     └─self$searchForEntries(fieldsFilter, max.results = max.results)
 5.       └─private$doSearchForEntries(fields = fields, max.results = max.results)
 6.         └─private$searchByMass(...)
 7.           └─self$wsGetLiteEntity(...)
 8.             └─XML::xmlInternalTreeParse(results, asText = TRUE)
── Error ('test_long_100_generic.R:17:1'): Additional fields are accepted in annotateMzValues() ──
Error in `if (file == "" || length(file) == 0) stop("empty or no content specified")`: missing value where TRUE/FALSE needed
Backtrace:
    ▆
 1. ├─base::do.call(fct, params)
 2. └─biodb (local) `<fn>`(conn = `<ChebiCnn>`, opt = `<named list>`)
 3.   └─conn$annotateMzValues(...)
 4.     └─self$searchForEntries(fieldsFilter, max.results = max.results)
 5.       └─private$doSearchForEntries(fields = fields, max.results = max.results)
 6.         └─private$searchByMass(...)
 7.           └─self$wsGetLiteEntity(...)
 8.             └─XML::xmlInternalTreeParse(results, asText = TRUE)

[ FAIL 7 | WARN 0 | SKIP 0 | PASS 273 ]
Error: Test failures
Execution halted

'R CMD check' output

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/bbs-3.21-bioc/R/bin/R CMD check --test-dir=longtests --no-stop-on-test-error --no-codoc --no-examples --no-manual --ignore-vignettes --check-subdirs=no biodbChebi_1.14.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory ‘/home/biocbuild/bbs-3.21-bioc-longtests/meat/biodbChebi.Rcheck’
* using R version 4.5.1 (2025-06-13)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    gcc (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
    GNU Fortran (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
* running under: Ubuntu 24.04.3 LTS
* using session charset: UTF-8
* using options ‘--no-codoc --no-examples --no-manual --ignore-vignettes --no-stop-on-test-error’
* checking for file ‘biodbChebi/DESCRIPTION’ ... OK
* this is package ‘biodbChebi’ version ‘1.14.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘biodbChebi’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... SKIPPED
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in ‘vignettes’ ... SKIPPED
* checking examples ... SKIPPED
* checking for unstated dependencies in ‘longtests’ ... OK
* checking tests in ‘longtests’ ...
  Running ‘testthat.R’
 ERROR
Running the tests in ‘longtests/testthat.R’ failed.
Last 13 lines of output:
  Error in `if (file == "" || length(file) == 0) stop("empty or no content specified")`: missing value where TRUE/FALSE needed
  Backtrace:
      ▆
   1. ├─base::do.call(fct, params)
   2. └─biodb (local) `<fn>`(conn = `<ChebiCnn>`, opt = `<named list>`)
   3.   └─conn$annotateMzValues(...)
   4.     └─self$searchForEntries(fieldsFilter, max.results = max.results)
   5.       └─private$doSearchForEntries(fields = fields, max.results = max.results)
   6.         └─private$searchByMass(...)
   7.           └─self$wsGetLiteEntity(...)
   8.             └─XML::xmlInternalTreeParse(results, asText = TRUE)
  
  [ FAIL 7 | WARN 0 | SKIP 0 | PASS 273 ]
  Error: Test failures
  Execution halted
* DONE

Status: 1 ERROR
See
  ‘/home/biocbuild/bbs-3.21-bioc-longtests/meat/biodbChebi.Rcheck/00check.log’
for details.

Installation output

biodbChebi.Rcheck/00install.out

* installing *source* package ‘biodbChebi’ ...
** this is package ‘biodbChebi’ version ‘1.14.0’
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (biodbChebi)