Back to Long Tests report for BioC 3.21

This page was generated on 2025-09-20 23:55 -0400 (Sat, 20 Sep 2025).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 24.04.3 LTS)x86_644.5.1 (2025-06-13) -- "Great Square Root" 4827
merida1macOS 12.7.5 Montereyx86_644.5.1 RC (2025-06-05 r88288) -- "Great Square Root" 4608
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 6/30HostnameOS / ArchCHECK
biodbChebi 1.14.0  (landing page)
Pierrick Roger
Snapshot Date: 2025-09-20 09:55 -0400 (Sat, 20 Sep 2025)
git_url: https://git.bioconductor.org/packages/biodbChebi
git_branch: RELEASE_3_21
git_last_commit: b8d718f
git_last_commit_date: 2025-04-15 12:39:10 -0400 (Tue, 15 Apr 2025)
nebbiolo1Linux (Ubuntu 24.04.3 LTS) / x86_64  ERROR  
merida1macOS 12.7.5 Monterey / x86_64  ERROR  

CHECK results for biodbChebi on merida1

To the developers/maintainers of the biodbChebi package:
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: biodbChebi
Version: 1.14.0
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --test-dir=longtests --no-stop-on-test-error --no-codoc --no-examples --no-manual --ignore-vignettes --check-subdirs=no biodbChebi_1.14.0.tar.gz
StartedAt: 2025-09-20 16:01:16 -0400 (Sat, 20 Sep 2025)
EndedAt: 2025-09-20 16:02:15 -0400 (Sat, 20 Sep 2025)
EllapsedTime: 58.8 seconds
RetCode: 1
Status:   ERROR  
CheckDir: biodbChebi.Rcheck
Warnings: NA

Tests output

biodbChebi.Rcheck/tests/testthat.Rout.fail


R version 4.5.1 RC (2025-06-05 r88288) -- "Great Square Root"
Copyright (C) 2025 The R Foundation for Statistical Computing
Platform: x86_64-apple-darwin20

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> # Script needed to run testthat automatically from ‘R CMD check’. See
> # testthat::test_dir documentation.
> library(testthat)
> library(biodbChebi)
> Sys.setenv(TESTTHAT_REPORTER="summary")
> Sys.setenv(BIODB_LOG_DST="console")
> test_check("biodbChebi")
biodb.INFO [2025-09-20 16:02:00.750][biodb::testContext]
biodb.INFO [2025-09-20 16:02:00.754][biodb::testContext] ********************************************************************************
biodb.INFO [2025-09-20 16:02:00.755][biodb::testContext] Test context - Generic long tests
biodb.INFO [2025-09-20 16:02:00.756][biodb::testContext] ********************************************************************************
biodb.INFO [2025-09-20 16:02:00.758][biodb::testContext]
biodb.INFO [2025-09-20 16:02:00.764][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.16.0.
biodb.DEBUG[2025-09-20 16:02:00.766][self$loadDefinitions] Load definitions from file "/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/biodb/definitions.yml".
biodb.DEBUG[2025-09-20 16:02:00.773][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-09-20 16:02:00.775][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2025-09-20 16:02:00.776][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2025-09-20 16:02:00.777][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-20 16:02:00.778][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-20 16:02:00.779][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-20 16:02:00.781][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2025-09-20 16:02:00.805][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2025-09-20 16:02:00.807][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-20 16:02:00.808][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-20 16:02:00.809][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-20 16:02:00.810][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2025-09-20 16:02:00.811][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2025-09-20 16:02:00.813][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-20 16:02:00.814][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-20 16:02:00.815][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-20 16:02:00.816][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2025-09-20 16:02:00.817][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2025-09-20 16:02:00.819][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2025-09-20 16:02:00.820][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-20 16:02:00.821][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-20 16:02:00.822][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-20 16:02:00.823][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2025-09-20 16:02:00.825][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2025-09-20 16:02:00.826][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2025-09-20 16:02:00.827][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-20 16:02:00.828][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-20 16:02:00.830][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-20 16:02:00.831][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2025-09-20 16:02:00.832][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2025-09-20 16:02:00.833][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-20 16:02:00.834][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-20 16:02:00.836][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-20 16:02:00.837][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2025-09-20 16:02:00.838][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2025-09-20 16:02:00.839][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2025-09-20 16:02:00.841][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-20 16:02:00.842][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-20 16:02:00.843][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-20 16:02:00.844][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2025-09-20 16:02:00.845][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2025-09-20 16:02:00.847][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-20 16:02:00.848][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-20 16:02:00.849][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-20 16:02:00.850][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2025-09-20 16:02:00.851][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2025-09-20 16:02:00.853][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2025-09-20 16:02:00.854][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-20 16:02:00.855][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-20 16:02:00.856][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-20 16:02:00.857][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2025-09-20 16:02:00.859][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2025-09-20 16:02:00.860][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2025-09-20 16:02:00.861][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2025-09-20 16:02:00.862][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2025-09-20 16:02:00.864][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2025-09-20 16:02:00.865][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-20 16:02:00.866][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-20 16:02:00.867][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-20 16:02:00.869][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2025-09-20 16:02:00.870][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2025-09-20 16:02:00.871][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-20 16:02:00.872][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-20 16:02:00.873][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-20 16:02:00.875][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2025-09-20 16:02:00.876][self$set] Set key entries.sep to "|".
biodb.DEBUG[2025-09-20 16:02:00.877][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-20 16:02:00.878][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-20 16:02:00.879][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-20 16:02:00.881][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2025-09-20 16:02:00.882][self$set] Set key offline to FALSE.
biodb.DEBUG[2025-09-20 16:02:00.883][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-20 16:02:00.885][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-20 16:02:00.886][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-20 16:02:00.887][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2025-09-20 16:02:00.888][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2025-09-20 16:02:00.889][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-20 16:02:00.891][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-20 16:02:00.892][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-20 16:02:00.893][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2025-09-20 16:02:00.894][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2025-09-20 16:02:00.895][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-20 16:02:00.897][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-20 16:02:00.898][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-20 16:02:00.899][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2025-09-20 16:02:00.900][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2025-09-20 16:02:00.911][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2025-09-20 16:02:00.912][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-20 16:02:00.913][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-20 16:02:00.914][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-20 16:02:00.916][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2025-09-20 16:02:00.917][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2025-09-20 16:02:00.918][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2025-09-20 16:02:00.919][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-20 16:02:00.920][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-20 16:02:00.922][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-20 16:02:00.925][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2025-09-20 16:02:00.970][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-09-20 16:02:00.997][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2025-09-20 16:02:00.998][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-09-20 16:02:01.000][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-09-20 16:02:01.001][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-09-20 16:02:01.002][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-09-20 16:02:01.003][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-09-20 16:02:01.004][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-09-20 16:02:01.006][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2025-09-20 16:02:01.007][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-09-20 16:02:01.008][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-09-20 16:02:01.009][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2025-09-20 16:02:01.010][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-09-20 16:02:01.012][self$setPropertyValue] Setting property "parsing.expr" to "<NULL>".
biodb.DEBUG[2025-09-20 16:02:01.013][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-09-20 16:02:01.014][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-09-20 16:02:01.014][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-09-20 16:02:01.014][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-09-20 16:02:01.014][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2025-09-20 16:02:01.014][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2025-09-20 16:02:01.015][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-09-20 16:02:01.017][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-09-20 16:02:01.018][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-09-20 16:02:01.019][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-09-20 16:02:01.020][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-09-20 16:02:01.021][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-09-20 16:02:01.022][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-09-20 16:02:01.024][self$setPropertyValue] Setting property "urls" to "<NULL>".
biodb.DEBUG[2025-09-20 16:02:01.025][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-09-20 16:02:01.026][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-09-20 16:02:01.027][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-09-20 16:02:01.028][self$setPropertyValue] Setting property "xml.ns" to "<NULL>".
biodb.DEBUG[2025-09-20 16:02:01.030][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2025-09-20 16:02:01.032][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-09-20 16:02:01.033][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2025-09-20 16:02:01.034][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-09-20 16:02:01.036][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-09-20 16:02:01.037][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-09-20 16:02:01.038][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-09-20 16:02:01.039][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-09-20 16:02:01.040][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-09-20 16:02:01.042][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2025-09-20 16:02:01.043][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-09-20 16:02:01.044][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-09-20 16:02:01.045][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2025-09-20 16:02:01.047][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-09-20 16:02:01.048][self$setPropertyValue] Setting property "parsing.expr" to "<NULL>".
biodb.DEBUG[2025-09-20 16:02:01.049][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-09-20 16:02:01.050][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-09-20 16:02:01.050][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-09-20 16:02:01.050][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-09-20 16:02:01.050][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2025-09-20 16:02:01.050][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2025-09-20 16:02:01.052][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-09-20 16:02:01.053][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-09-20 16:02:01.054][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-09-20 16:02:01.055][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-09-20 16:02:01.056][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-09-20 16:02:01.057][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-09-20 16:02:01.059][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-09-20 16:02:01.060][self$setPropertyValue] Setting property "urls" to "<NULL>".
biodb.DEBUG[2025-09-20 16:02:01.061][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-09-20 16:02:01.062][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-09-20 16:02:01.063][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-09-20 16:02:01.065][self$setPropertyValue] Setting property "xml.ns" to "<NULL>".
biodb.DEBUG[2025-09-20 16:02:01.066][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2025-09-20 16:02:01.068][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-09-20 16:02:01.070][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2025-09-20 16:02:01.071][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-09-20 16:02:01.072][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-09-20 16:02:01.073][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-09-20 16:02:01.075][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-09-20 16:02:01.076][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-09-20 16:02:01.077][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-09-20 16:02:01.078][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2025-09-20 16:02:01.080][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-09-20 16:02:01.081][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2025-09-20 16:02:01.082][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2025-09-20 16:02:01.083][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-09-20 16:02:01.085][self$setPropertyValue] Setting property "parsing.expr" to "<NULL>".
biodb.DEBUG[2025-09-20 16:02:01.086][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-09-20 16:02:01.087][self$setPropertyValue] Setting property "searchable.fields" to "<NULL>".
biodb.DEBUG[2025-09-20 16:02:01.088][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-09-20 16:02:01.089][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-09-20 16:02:01.091][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-09-20 16:02:01.092][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-09-20 16:02:01.093][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-09-20 16:02:01.094][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-09-20 16:02:01.095][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-09-20 16:02:01.097][self$setPropertyValue] Setting property "urls" to "<NULL>".
biodb.DEBUG[2025-09-20 16:02:01.098][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-09-20 16:02:01.099][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-09-20 16:02:01.100][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-09-20 16:02:01.101][self$setPropertyValue] Setting property "xml.ns" to "<NULL>".
biodb.DEBUG[2025-09-20 16:02:01.103][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2025-09-20 16:02:01.105][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-09-20 16:02:01.106][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2025-09-20 16:02:01.107][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-09-20 16:02:01.109][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-09-20 16:02:01.110][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-09-20 16:02:01.111][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-09-20 16:02:01.112][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-09-20 16:02:01.114][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-09-20 16:02:01.115][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2025-09-20 16:02:01.116][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-09-20 16:02:01.117][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2025-09-20 16:02:01.119][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2025-09-20 16:02:01.120][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-09-20 16:02:01.121][self$setPropertyValue] Setting property "parsing.expr" to "<NULL>".
biodb.DEBUG[2025-09-20 16:02:01.122][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-09-20 16:02:01.124][self$setPropertyValue] Setting property "searchable.fields" to "<NULL>".
biodb.DEBUG[2025-09-20 16:02:01.125][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-09-20 16:02:01.126][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-09-20 16:02:01.127][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-09-20 16:02:01.128][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-09-20 16:02:01.130][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-09-20 16:02:01.131][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-09-20 16:02:01.132][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-09-20 16:02:01.133][self$setPropertyValue] Setting property "urls" to "<NULL>".
biodb.DEBUG[2025-09-20 16:02:01.134][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-09-20 16:02:01.135][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-09-20 16:02:01.137][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-09-20 16:02:01.138][self$setPropertyValue] Setting property "xml.ns" to "<NULL>".
biodb.DEBUG[2025-09-20 16:02:01.142][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-09-20 16:02:01.143][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2025-09-20 16:02:01.144][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-20 16:02:01.145][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-20 16:02:01.146][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-20 16:02:01.147][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-20 16:02:01.149][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-20 16:02:01.150][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-20 16:02:01.151][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-20 16:02:01.152][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-20 16:02:01.153][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-20 16:02:01.154][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-20 16:02:01.155][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-20 16:02:01.156][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-20 16:02:01.157][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-20 16:02:01.158][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-20 16:02:01.160][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-20 16:02:01.161][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-20 16:02:01.162][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-20 16:02:01.163][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-20 16:02:01.164][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-20 16:02:01.165][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-20 16:02:01.166][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-20 16:02:01.167][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-20 16:02:01.168][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-20 16:02:01.170][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-20 16:02:01.171][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-20 16:02:01.172][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-20 16:02:01.173][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-20 16:02:01.174][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-20 16:02:01.175][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-20 16:02:01.176][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-20 16:02:01.177][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-20 16:02:01.179][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-20 16:02:01.180][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-20 16:02:01.181][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-20 16:02:01.182][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-20 16:02:01.183][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-20 16:02:01.184][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-20 16:02:01.185][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-20 16:02:01.186][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-20 16:02:01.188][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-20 16:02:01.189][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-20 16:02:01.190][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-20 16:02:01.191][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-20 16:02:01.192][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-20 16:02:01.193][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-20 16:02:01.194][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-20 16:02:01.196][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-20 16:02:01.201][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-20 16:02:01.202][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-20 16:02:01.203][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-20 16:02:01.204][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-20 16:02:01.205][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-20 16:02:01.207][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-20 16:02:01.208][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-20 16:02:01.209][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-20 16:02:01.210][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-20 16:02:01.211][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-20 16:02:01.212][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-20 16:02:01.213][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-20 16:02:01.214][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-20 16:02:01.215][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-20 16:02:01.216][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-20 16:02:01.217][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-20 16:02:01.218][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-20 16:02:01.219][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-20 16:02:01.220][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-20 16:02:01.222][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-20 16:02:01.223][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-20 16:02:01.224][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-20 16:02:01.225][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-20 16:02:01.226][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-20 16:02:01.227][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-20 16:02:01.228][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-20 16:02:01.229][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-20 16:02:01.230][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-20 16:02:01.231][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-20 16:02:01.232][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-20 16:02:01.234][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-20 16:02:01.235][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-20 16:02:01.236][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-20 16:02:01.237][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-20 16:02:01.238][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-20 16:02:01.239][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-20 16:02:01.240][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-20 16:02:01.241][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-20 16:02:01.242][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-20 16:02:01.244][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2025-09-20 16:02:01.248][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2025-09-20 16:02:01.250][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2025-09-20 16:02:01.252][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2025-09-20 16:02:01.254][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2025-09-20 16:02:01.255][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2025-09-20 16:02:01.257][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2025-09-20 16:02:01.259][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2025-09-20 16:02:01.261][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2025-09-20 16:02:01.262][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2025-09-20 16:02:01.264][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2025-09-20 16:02:01.266][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2025-09-20 16:02:01.268][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2025-09-20 16:02:01.270][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2025-09-20 16:02:01.271][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2025-09-20 16:02:01.273][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2025-09-20 16:02:01.275][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2025-09-20 16:02:01.277][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2025-09-20 16:02:01.278][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2025-09-20 16:02:01.280][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2025-09-20 16:02:01.282][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2025-09-20 16:02:01.284][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2025-09-20 16:02:01.286][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2025-09-20 16:02:01.288][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2025-09-20 16:02:01.290][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2025-09-20 16:02:01.292][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2025-09-20 16:02:01.293][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2025-09-20 16:02:01.295][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2025-09-20 16:02:01.297][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2025-09-20 16:02:01.299][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2025-09-20 16:02:01.301][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2025-09-20 16:02:01.303][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2025-09-20 16:02:01.304][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2025-09-20 16:02:01.306][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2025-09-20 16:02:01.308][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2025-09-20 16:02:01.309][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2025-09-20 16:02:01.311][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2025-09-20 16:02:01.313][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2025-09-20 16:02:01.314][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2025-09-20 16:02:01.316][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2025-09-20 16:02:01.318][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2025-09-20 16:02:01.320][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2025-09-20 16:02:01.321][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2025-09-20 16:02:01.323][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2025-09-20 16:02:01.325][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2025-09-20 16:02:01.326][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2025-09-20 16:02:01.328][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2025-09-20 16:02:01.330][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2025-09-20 16:02:01.332][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2025-09-20 16:02:01.333][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2025-09-20 16:02:01.335][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2025-09-20 16:02:01.337][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2025-09-20 16:02:01.338][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2025-09-20 16:02:01.340][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2025-09-20 16:02:01.342][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2025-09-20 16:02:01.343][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2025-09-20 16:02:01.345][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2025-09-20 16:02:01.347][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2025-09-20 16:02:01.349][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2025-09-20 16:02:01.350][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2025-09-20 16:02:01.352][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2025-09-20 16:02:01.354][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2025-09-20 16:02:01.356][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2025-09-20 16:02:01.357][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2025-09-20 16:02:01.359][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2025-09-20 16:02:01.361][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2025-09-20 16:02:01.362][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2025-09-20 16:02:01.364][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2025-09-20 16:02:01.366][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2025-09-20 16:02:01.367][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2025-09-20 16:02:01.369][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2025-09-20 16:02:01.371][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2025-09-20 16:02:01.372][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2025-09-20 16:02:01.374][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2025-09-20 16:02:01.376][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2025-09-20 16:02:01.377][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2025-09-20 16:02:01.379][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2025-09-20 16:02:01.381][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2025-09-20 16:02:01.383][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2025-09-20 16:02:01.384][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2025-09-20 16:02:01.386][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2025-09-20 16:02:01.388][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2025-09-20 16:02:01.389][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2025-09-20 16:02:01.397][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2025-09-20 16:02:01.399][initialize] This is biodb version 1.16.0.
biodb.DEBUG[2025-09-20 16:02:01.402][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-09-20 16:02:01.403][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2025-09-20 16:02:01.405][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-20 16:02:01.406][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2025-09-20 16:02:01.407][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-20 16:02:01.413][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-20 16:02:01.414][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-20 16:02:01.416][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-20 16:02:01.422][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-20 16:02:01.423][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-20 16:02:01.424][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-20 16:02:01.425][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-20 16:02:01.426][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-20 16:02:01.427][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-20 16:02:01.428][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-20 16:02:01.429][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-20 16:02:01.430][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-20 16:02:01.432][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-20 16:02:01.433][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-20 16:02:01.434][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-20 16:02:01.435][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-20 16:02:01.436][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-20 16:02:01.437][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-20 16:02:01.438][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-20 16:02:01.439][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-20 16:02:01.440][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-20 16:02:01.441][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-20 16:02:01.442][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-20 16:02:01.443][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-20 16:02:01.444][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-20 16:02:01.445][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-20 16:02:01.447][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-20 16:02:01.448][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-20 16:02:01.449][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-20 16:02:01.450][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-20 16:02:01.451][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-20 16:02:01.452][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-20 16:02:01.453][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-20 16:02:01.454][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-20 16:02:01.455][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-20 16:02:01.456][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-20 16:02:01.457][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-20 16:02:01.458][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-20 16:02:01.459][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-20 16:02:01.461][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-20 16:02:01.462][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-20 16:02:01.463][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-20 16:02:01.464][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-20 16:02:01.465][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-20 16:02:01.466][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-20 16:02:01.467][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-20 16:02:01.468][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-20 16:02:01.469][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-20 16:02:01.470][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-20 16:02:01.472][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-20 16:02:01.473][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-20 16:02:01.474][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-20 16:02:01.475][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-20 16:02:01.476][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-20 16:02:01.477][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-20 16:02:01.478][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-20 16:02:01.479][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-20 16:02:01.480][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-20 16:02:01.481][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-20 16:02:01.482][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-20 16:02:01.484][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-20 16:02:01.485][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-20 16:02:01.486][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-20 16:02:01.487][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-20 16:02:01.488][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-20 16:02:01.489][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-20 16:02:01.490][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-20 16:02:01.491][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-20 16:02:01.492][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-20 16:02:01.493][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-20 16:02:01.494][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-20 16:02:01.496][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-20 16:02:01.497][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-20 16:02:01.498][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-20 16:02:01.499][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-20 16:02:01.500][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-20 16:02:01.501][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-20 16:02:01.502][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-20 16:02:01.503][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-20 16:02:01.504][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-20 16:02:01.505][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-20 16:02:01.506][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-20 16:02:01.508][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-20 16:02:01.509][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-20 16:02:01.510][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-20 16:02:01.511][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-20 16:02:01.512][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-20 16:02:01.513][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-20 16:02:01.514][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-20 16:02:01.515][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-20 16:02:01.516][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-20 16:02:01.517][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-20 16:02:01.518][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-20 16:02:01.520][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-20 16:02:01.521][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-20 16:02:01.522][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-20 16:02:01.523][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-20 16:02:01.524][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-20 16:02:01.525][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-20 16:02:01.526][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-20 16:02:01.527][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-20 16:02:01.528][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-20 16:02:01.529][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-20 16:02:01.530][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-20 16:02:01.532][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-20 16:02:01.533][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-20 16:02:01.534][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-20 16:02:01.535][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-20 16:02:01.536][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-20 16:02:01.537][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-20 16:02:01.538][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-20 16:02:01.539][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-20 16:02:01.540][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-20 16:02:01.541][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-20 16:02:01.542][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-20 16:02:01.544][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-20 16:02:01.545][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-20 16:02:01.546][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-20 16:02:01.547][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-20 16:02:01.549][biodb$loadDefinitions] Load definitions from file "/Users/biocbuild/bbs-3.21-bioc-longtests/meat/biodbChebi.Rcheck/biodbChebi/definitions.yml".
biodb.DEBUG[2025-09-20 16:02:01.562][self$getDbsInfo()$define] Define connector chebi.
biodb.DEBUG[2025-09-20 16:02:01.565][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-09-20 16:02:01.566][self$setPropertyValue] Setting property "description" to "NA".
biodb.DEBUG[2025-09-20 16:02:01.567][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-09-20 16:02:01.569][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-09-20 16:02:01.570][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-09-20 16:02:01.571][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-09-20 16:02:01.572][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2025-09-20 16:02:01.573][self$setPropertyValue] Setting property "entry.content.encoding" to "UTF-8".
biodb.DEBUG[2025-09-20 16:02:01.575][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2025-09-20 16:02:01.576][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-09-20 16:02:01.577][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-09-20 16:02:01.578][self$setPropertyValue] Setting property "name" to "ChEBI".
biodb.DEBUG[2025-09-20 16:02:01.579][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-09-20 16:02:01.581][self$setPropertyValue] Setting property "parsing.expr" to "substring-after(//chebi:return/chebi:chebiId,'CHEBI:')".
biodb.DEBUG[2025-09-20 16:02:01.581][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:charge".
biodb.DEBUG[2025-09-20 16:02:01.581][self$setPropertyValue] Setting property "parsing.expr" to "c("//chebi:Formulae/chebi:source[text()='ChEBI']/../chebi:data", "(//chebi:Formulae/chebi:data)[1]")".
biodb.DEBUG[2025-09-20 16:02:01.581][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:inchi".
biodb.DEBUG[2025-09-20 16:02:01.581][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:inchiKey".
biodb.DEBUG[2025-09-20 16:02:01.581][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:DatabaseLinks/chebi:type[text()='KEGG COMPOUND accession']/../chebi:data".
biodb.DEBUG[2025-09-20 16:02:01.581][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:mass".
biodb.DEBUG[2025-09-20 16:02:01.581][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:monoisotopicMass".
biodb.DEBUG[2025-09-20 16:02:01.581][self$setPropertyValue] Setting property "parsing.expr" to "c("//chebi:chebiAsciiName", "//chebi:Synonyms/chebi:data")".
biodb.DEBUG[2025-09-20 16:02:01.581][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:entityStar".
biodb.DEBUG[2025-09-20 16:02:01.581][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:smiles".
biodb.DEBUG[2025-09-20 16:02:01.582][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2025-09-20 16:02:01.583][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-09-20 16:02:01.583][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-09-20 16:02:01.583][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-09-20 16:02:01.585][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2025-09-20 16:02:01.586][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-09-20 16:02:01.587][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-09-20 16:02:01.588][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-09-20 16:02:01.589][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-09-20 16:02:01.590][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-09-20 16:02:01.592][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-09-20 16:02:01.593][self$setPropertyValue] Setting property "urls" to "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-09-20 16:02:01.593][self$setPropertyValue] Setting property "urls" to "https://www.ebi.ac.uk/webservices/chebi/2.0/".
biodb.DEBUG[2025-09-20 16:02:01.594][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-09-20 16:02:01.595][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-09-20 16:02:01.596][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2025-09-20 16:02:01.598][self$setPropertyValue] Setting property "xml.ns" to "https://www.ebi.ac.uk/webservices/chebi".
biodb.DEBUG[2025-09-20 16:02:01.598][self$setPropertyValue] Setting property "xml.ns" to "http://www.w3.org/2001/XMLSchema".
biodb.DEBUG[2025-09-20 16:02:01.606][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2025-09-20 16:02:01.608][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2025-09-20 16:02:01.610][self$getEntryFields()$define] Define field n_stars.
biodb.DEBUG[2025-09-20 16:02:01.612][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2025-09-20 16:02:01.613][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2025-09-20 16:02:01.615][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2025-09-20 16:02:01.669][super$initialize] Initialize connector chebi.
biodb.DEBUG[2025-09-20 16:02:01.670][super$initialize] Register connector chebi with the request scheduler
biodb.DEBUG[2025-09-20 16:02:01.674][private$bdb$getRequestScheduler()$re ...] Register connector chebi.
biodb.DEBUG[2025-09-20 16:02:01.678][private$addConnectorRules] Create new rule for URL "www.ebi.ac.uk" of connector "chebi".
biodb.DEBUG[2025-09-20 16:02:01.682][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-09-20 16:02:01.683][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-09-20 16:02:01.685][rule$addConnector] Connector "chebi" is already listed in rule "www.ebi.ac.uk".
biodb.DEBUG[2025-09-20 16:02:01.686][biodb$getFactory()$createConn] Creating new connector chebi for database class chebi .
biodb.INFO [2025-09-20 16:02:01.696][biodb::testThat]
biodb.INFO [2025-09-20 16:02:01.697][biodb::testThat] Running test function  test.entry.fields  (" Entry fields have a correct value ").
biodb.INFO [2025-09-20 16:02:01.698][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-09-20 16:02:01.699][biodb::testThat]
biodb.TRACE[2025-09-20 16:02:01.703][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/bbs-3.21-bioc-longtests/meat/biodbChebi.Rcheck/biodbChebi/testref/entry-chebi-15440-content.xml".
biodb.DEBUG[2025-09-20 16:02:01.705][biodb$getFactory()$createEntryFromCo ...] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-09-20 16:02:01.709][biodb$getFactory()$createEntryFromCo ...] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-09-20 16:02:01.718][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-20 16:02:01.719][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-20 16:02:01.720][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-20 16:02:01.737][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-20 16:02:01.739][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-20 16:02:01.740][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-20 16:02:01.741][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-20 16:02:01.751][ef$get] Asked field names are: accession.
biodb.TRACE[2025-09-20 16:02:01.752][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-20 16:02:01.754][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:01.755][ef$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:01.757][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-20 16:02:01.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-20 16:02:01.775][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:01.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:01.778][ef$get] Asked field names are: charge.
biodb.TRACE[2025-09-20 16:02:01.780][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-09-20 16:02:01.781][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:01.782][ef$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:01.818][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-09-20 16:02:01.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-09-20 16:02:01.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:01.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:01.823][ef$get] Asked field names are: formula.
biodb.TRACE[2025-09-20 16:02:01.825][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-20 16:02:01.826][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:01.827][ef$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:01.829][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-09-20 16:02:01.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-20 16:02:01.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:01.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:01.834][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-09-20 16:02:01.835][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-20 16:02:01.836][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:01.837][ef$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:01.839][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-09-20 16:02:01.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-20 16:02:01.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:01.843][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:01.844][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-20 16:02:01.845][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-20 16:02:01.847][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:01.848][ef$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:01.849][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-20 16:02:01.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-20 16:02:01.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:01.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:01.854][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-09-20 16:02:01.856][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-09-20 16:02:01.857][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:01.858][ef$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:01.860][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-09-20 16:02:01.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-09-20 16:02:01.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:01.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:01.865][ef$get] Asked field names are: mass.
biodb.TRACE[2025-09-20 16:02:01.866][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-20 16:02:01.867][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:01.869][ef$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:01.870][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-09-20 16:02:01.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-20 16:02:01.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:01.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:01.875][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-20 16:02:01.877][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-20 16:02:01.878][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:01.879][ef$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:01.889][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-20 16:02:01.890][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-20 16:02:01.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:01.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:01.894][ef$get] Asked field names are: name.
biodb.TRACE[2025-09-20 16:02:01.895][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-09-20 16:02:01.896][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:01.897][ef$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:01.899][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-20 16:02:01.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-20 16:02:01.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:01.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:01.904][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-09-20 16:02:01.905][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-09-20 16:02:01.906][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:01.908][ef$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:01.909][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-09-20 16:02:01.910][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-09-20 16:02:01.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:01.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:01.914][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-09-20 16:02:01.915][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-20 16:02:01.917][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:01.918][ef$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:01.919][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-09-20 16:02:01.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-20 16:02:01.922][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:01.923][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:01.924][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-20 16:02:01.926][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-20 16:02:01.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:01.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:01.929][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-20 16:02:01.931][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-20 16:02:01.932][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:01.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:01.934][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-20 16:02:01.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-20 16:02:01.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:01.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:01.939][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-20 16:02:01.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-20 16:02:01.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:01.943][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:01.944][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-20 16:02:01.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-20 16:02:01.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:01.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:01.949][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-20 16:02:01.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-20 16:02:01.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:01.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:01.954][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-20 16:02:01.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-20 16:02:01.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:01.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:02.003][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-20 16:02:02.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-20 16:02:02.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:02.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:02.008][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-20 16:02:02.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-20 16:02:02.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:02.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:02.013][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-20 16:02:02.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-20 16:02:02.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:02.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-20 16:02:02.018][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 15440.
biodb.TRACE[2025-09-20 16:02:02.021][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-09-20 16:02:02.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-20 16:02:02.023][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:02.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:02.026][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-09-20 16:02:02.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-20 16:02:02.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:02.030][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:02.066][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-20 16:02:02.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-20 16:02:02.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:02.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:02.071][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-20 16:02:02.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-20 16:02:02.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:02.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:02.076][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-20 16:02:02.077][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-20 16:02:02.079][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:02.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:02.081][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-20 16:02:02.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-20 16:02:02.084][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:02.085][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:02.086][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-09-20 16:02:02.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-09-20 16:02:02.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:02.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:02.091][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-09-20 16:02:02.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-09-20 16:02:02.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:02.095][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:02.096][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2025-09-20 16:02:02.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-09-20 16:02:02.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:02.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:02.101][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-09-20 16:02:02.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-09-20 16:02:02.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:02.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:02.124][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-20 16:02:02.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-20 16:02:02.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:02.128][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:02.145][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-20 16:02:02.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-20 16:02:02.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:02.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:02.155][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-20 16:02:02.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-20 16:02:02.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:02.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:02.160][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-20 16:02:02.162][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-20 16:02:02.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:02.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:02.166][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-20 16:02:02.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-20 16:02:02.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:02.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:02.173][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-20 16:02:02.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-20 16:02:02.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:02.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:02.177][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-20 16:02:02.179][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-20 16:02:02.180][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:02.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:02.182][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-20 16:02:02.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-20 16:02:02.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:02.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:02.188][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-20 16:02:02.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-20 16:02:02.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:02.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:02.192][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-20 16:02:02.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-20 16:02:02.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:02.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:02.197][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-20 16:02:02.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-20 16:02:02.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:02.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:02.211][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-20 16:02:02.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-20 16:02:02.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:02.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:02.216][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-20 16:02:02.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-20 16:02:02.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:02.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:02.220][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-20 16:02:02.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-20 16:02:02.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:02.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:02.225][ef$get] Asked field names are: accession.
biodb.TRACE[2025-09-20 16:02:02.227][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-20 16:02:02.228][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:02.229][ef$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:02.230][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-20 16:02:02.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-20 16:02:02.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:02.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:02.250][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-20 16:02:02.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-20 16:02:02.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:02.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:02.255][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-20 16:02:02.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-20 16:02:02.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:02.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:02.260][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-20 16:02:02.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-20 16:02:02.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:02.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:02.264][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-20 16:02:02.266][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-20 16:02:02.267][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:02.268][ef$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:02.269][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-20 16:02:02.270][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-20 16:02:02.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:02.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:02.283][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-20 16:02:02.285][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-20 16:02:02.286][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:02.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:02.288][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-20 16:02:02.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-20 16:02:02.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:02.292][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:02.293][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-20 16:02:02.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-20 16:02:02.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:02.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:02.298][ef$get] Asked field names are: name.
biodb.TRACE[2025-09-20 16:02:02.300][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-09-20 16:02:02.301][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:02.302][ef$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:02.303][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-20 16:02:02.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-20 16:02:02.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:02.307][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:02.318][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-09-20 16:02:02.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-20 16:02:02.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:02.322][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:02.323][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-09-20 16:02:02.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-20 16:02:02.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:02.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:02.328][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-09-20 16:02:02.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-20 16:02:02.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:02.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:02.333][ef$get] Asked field names are: formula.
biodb.TRACE[2025-09-20 16:02:02.334][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-20 16:02:02.335][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:02.336][ef$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:02.338][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-09-20 16:02:02.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-20 16:02:02.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:02.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:02.353][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-20 16:02:02.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-20 16:02:02.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:02.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:02.358][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-20 16:02:02.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-20 16:02:02.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:02.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:02.363][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-20 16:02:02.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-20 16:02:02.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:02.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:02.368][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-20 16:02:02.369][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-20 16:02:02.370][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:02.371][ef$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:02.373][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-20 16:02:02.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-20 16:02:02.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:02.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:02.388][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-20 16:02:02.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-20 16:02:02.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:02.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:02.393][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-20 16:02:02.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-20 16:02:02.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:02.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:02.398][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-20 16:02:02.399][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-20 16:02:02.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:02.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:02.403][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-20 16:02:02.404][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-20 16:02:02.405][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:02.406][ef$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:02.407][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-20 16:02:02.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-20 16:02:02.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:02.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:02.422][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-09-20 16:02:02.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-09-20 16:02:02.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:02.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:02.431][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-09-20 16:02:02.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-09-20 16:02:02.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:02.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:02.436][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-09-20 16:02:02.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-09-20 16:02:02.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:02.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:02.441][ef$get] Asked field names are: charge.
biodb.TRACE[2025-09-20 16:02:02.442][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-09-20 16:02:02.443][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:02.444][ef$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:02.446][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-09-20 16:02:02.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-09-20 16:02:02.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:02.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:02.460][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-09-20 16:02:02.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-09-20 16:02:02.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:02.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:02.465][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-09-20 16:02:02.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-09-20 16:02:02.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:02.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:02.470][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-09-20 16:02:02.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-09-20 16:02:02.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:02.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:02.475][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-09-20 16:02:02.476][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-09-20 16:02:02.477][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:02.478][ef$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:02.479][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-09-20 16:02:02.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-09-20 16:02:02.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:02.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:02.494][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-09-20 16:02:02.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-09-20 16:02:02.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:02.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:02.499][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-09-20 16:02:02.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-09-20 16:02:02.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:02.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:02.504][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-09-20 16:02:02.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-09-20 16:02:02.506][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:02.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:02.509][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-09-20 16:02:02.510][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-09-20 16:02:02.511][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:02.512][ef$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:02.514][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-09-20 16:02:02.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-09-20 16:02:02.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:02.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:02.528][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-09-20 16:02:02.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-20 16:02:02.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:02.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:02.533][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-09-20 16:02:02.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-20 16:02:02.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:02.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:02.538][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-09-20 16:02:02.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-20 16:02:02.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:02.541][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:02.543][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-09-20 16:02:02.544][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-20 16:02:02.545][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:02.546][ef$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:02.548][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-09-20 16:02:02.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-20 16:02:02.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:02.551][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:02.562][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-20 16:02:02.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-20 16:02:02.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:02.566][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:02.567][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-20 16:02:02.568][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-20 16:02:02.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:02.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:02.572][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-20 16:02:02.573][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-20 16:02:02.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:02.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:02.577][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-20 16:02:02.578][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-20 16:02:02.579][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:02.580][ef$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:02.582][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-20 16:02:02.583][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-20 16:02:02.584][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:02.585][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:02.596][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-09-20 16:02:02.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-20 16:02:02.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:02.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:02.601][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-09-20 16:02:02.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-20 16:02:02.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:02.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:02.606][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-09-20 16:02:02.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-20 16:02:02.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:02.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:02.615][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-09-20 16:02:02.616][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-20 16:02:02.617][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:02.619][ef$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:02.620][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-09-20 16:02:02.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-20 16:02:02.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:02.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:02.634][ef$get] Asked field names are: accession.
biodb.TRACE[2025-09-20 16:02:02.635][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-20 16:02:02.637][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:02.638][ef$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:02.644][ef$get] Asked field names are: charge.
biodb.TRACE[2025-09-20 16:02:02.645][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-09-20 16:02:02.646][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:02.647][ef$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:02.654][ef$get] Asked field names are: formula.
biodb.TRACE[2025-09-20 16:02:02.655][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-20 16:02:02.656][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:02.657][ef$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:02.664][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-09-20 16:02:02.665][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-20 16:02:02.666][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:02.667][ef$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:02.673][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-20 16:02:02.675][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-20 16:02:02.676][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:02.677][ef$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:02.683][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-09-20 16:02:02.684][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-09-20 16:02:02.686][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:02.687][ef$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:02.693][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-20 16:02:02.694][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-20 16:02:02.695][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:02.697][ef$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:02.703][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-20 16:02:02.704][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-20 16:02:02.705][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:02.706][ef$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:02.712][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-09-20 16:02:02.714][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-09-20 16:02:02.715][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:02.716][ef$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:02.722][ef$get] Asked field names are: name.
biodb.TRACE[2025-09-20 16:02:02.723][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-09-20 16:02:02.725][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:02.726][ef$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:02.732][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-09-20 16:02:02.733][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-20 16:02:02.734][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:02.735][ef$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:02.758][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/bbs-3.21-bioc-longtests/meat/biodbChebi.Rcheck/biodbChebi/testref/entry-chebi-2528-content.xml".
biodb.DEBUG[2025-09-20 16:02:02.809][biodb$getFactory()$createEntryFromCo ...] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-09-20 16:02:02.810][biodb$getFactory()$createEntryFromCo ...] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-09-20 16:02:02.812][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-20 16:02:02.813][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-20 16:02:02.814][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-20 16:02:02.820][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-20 16:02:02.821][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-20 16:02:02.823][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-20 16:02:02.824][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-20 16:02:02.826][ef$get] Asked field names are: accession.
biodb.TRACE[2025-09-20 16:02:02.828][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-20 16:02:02.829][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:02.830][ef$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:02.831][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-20 16:02:02.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-20 16:02:02.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:02.835][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:02.859][ef$get] Asked field names are: charge.
biodb.TRACE[2025-09-20 16:02:02.860][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-09-20 16:02:02.861][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:02.862][ef$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:02.864][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-09-20 16:02:02.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-09-20 16:02:02.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:02.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:02.869][ef$get] Asked field names are: formula.
biodb.TRACE[2025-09-20 16:02:02.870][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-20 16:02:02.871][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:02.872][ef$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:02.874][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-09-20 16:02:02.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-20 16:02:02.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:02.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:02.879][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-09-20 16:02:02.881][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-20 16:02:02.882][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:02.883][ef$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:02.885][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-09-20 16:02:02.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-20 16:02:02.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:02.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:02.890][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-20 16:02:02.891][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-20 16:02:02.892][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:02.893][ef$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:02.895][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-20 16:02:02.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-20 16:02:02.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:02.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:02.900][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-09-20 16:02:02.901][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-09-20 16:02:02.902][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:02.903][ef$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:02.905][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-09-20 16:02:02.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-09-20 16:02:02.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:02.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:02.910][ef$get] Asked field names are: mass.
biodb.TRACE[2025-09-20 16:02:02.911][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-20 16:02:02.912][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:02.913][ef$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:02.915][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-09-20 16:02:02.916][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-20 16:02:02.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:02.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:02.920][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-20 16:02:02.921][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-20 16:02:02.922][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:02.923][ef$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:02.925][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-20 16:02:02.926][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-20 16:02:02.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:02.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:02.930][ef$get] Asked field names are: name.
biodb.TRACE[2025-09-20 16:02:02.931][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-09-20 16:02:02.932][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:02.934][ef$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:02.935][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-20 16:02:02.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-20 16:02:02.938][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:02.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:02.940][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-09-20 16:02:02.941][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-09-20 16:02:02.943][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:02.944][ef$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:02.945][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-09-20 16:02:02.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-09-20 16:02:02.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:02.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:02.950][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-09-20 16:02:02.951][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-20 16:02:02.953][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:02.954][ef$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:02.955][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-09-20 16:02:02.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-20 16:02:02.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:02.963][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:02.964][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-20 16:02:02.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-20 16:02:02.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:02.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:02.969][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-20 16:02:02.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-20 16:02:02.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:02.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:02.974][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-20 16:02:02.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-20 16:02:02.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:02.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:02.979][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-20 16:02:02.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-20 16:02:02.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:02.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:02.983][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-20 16:02:02.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-20 16:02:02.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:02.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:02.988][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-20 16:02:02.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-20 16:02:02.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:02.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:02.993][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-20 16:02:02.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-20 16:02:02.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:02.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:02.998][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-20 16:02:03.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-20 16:02:03.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:03.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:03.003][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-20 16:02:03.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-20 16:02:03.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:03.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:03.008][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-20 16:02:03.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-20 16:02:03.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:03.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-20 16:02:03.013][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 2528.
biodb.TRACE[2025-09-20 16:02:03.040][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-09-20 16:02:03.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-20 16:02:03.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:03.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:03.045][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-09-20 16:02:03.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-20 16:02:03.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:03.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:03.050][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-20 16:02:03.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-20 16:02:03.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:03.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:03.055][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-20 16:02:03.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-20 16:02:03.058][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:03.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:03.060][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-20 16:02:03.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-20 16:02:03.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:03.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:03.065][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-20 16:02:03.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-20 16:02:03.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:03.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:03.070][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-09-20 16:02:03.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-09-20 16:02:03.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:03.074][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:03.075][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-09-20 16:02:03.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-09-20 16:02:03.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:03.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:03.080][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2025-09-20 16:02:03.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-09-20 16:02:03.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:03.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:03.085][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-09-20 16:02:03.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-09-20 16:02:03.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:03.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:03.091][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-20 16:02:03.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-20 16:02:03.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:03.095][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:03.101][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-20 16:02:03.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-20 16:02:03.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:03.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:03.111][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-20 16:02:03.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-20 16:02:03.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:03.115][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:03.116][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-20 16:02:03.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-20 16:02:03.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:03.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:03.121][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-20 16:02:03.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-20 16:02:03.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:03.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:03.127][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-20 16:02:03.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-20 16:02:03.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:03.131][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:03.136][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-20 16:02:03.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-20 16:02:03.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:03.140][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:03.142][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-20 16:02:03.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-20 16:02:03.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:03.145][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:03.147][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-20 16:02:03.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-20 16:02:03.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:03.150][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:03.152][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-20 16:02:03.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-20 16:02:03.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:03.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:03.157][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-20 16:02:03.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-20 16:02:03.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:03.160][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:03.182][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-20 16:02:03.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-20 16:02:03.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:03.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:03.187][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-20 16:02:03.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-20 16:02:03.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:03.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:03.192][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-20 16:02:03.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-20 16:02:03.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:03.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:03.197][ef$get] Asked field names are: accession.
biodb.TRACE[2025-09-20 16:02:03.199][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-20 16:02:03.200][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:03.201][ef$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:03.202][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-20 16:02:03.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-20 16:02:03.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:03.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:03.216][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-20 16:02:03.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-20 16:02:03.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:03.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:03.222][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-20 16:02:03.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-20 16:02:03.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:03.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:03.227][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-20 16:02:03.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-20 16:02:03.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:03.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:03.231][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-20 16:02:03.233][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-20 16:02:03.234][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:03.235][ef$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:03.236][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-20 16:02:03.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-20 16:02:03.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:03.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:03.251][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-20 16:02:03.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-20 16:02:03.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:03.255][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:03.256][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-20 16:02:03.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-20 16:02:03.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:03.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:03.261][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-20 16:02:03.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-20 16:02:03.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:03.265][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:03.266][ef$get] Asked field names are: name.
biodb.TRACE[2025-09-20 16:02:03.268][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-09-20 16:02:03.269][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:03.270][ef$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:03.271][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-20 16:02:03.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-20 16:02:03.274][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:03.275][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:03.286][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-09-20 16:02:03.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-20 16:02:03.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:03.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:03.291][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-09-20 16:02:03.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-20 16:02:03.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:03.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:03.296][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-09-20 16:02:03.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-20 16:02:03.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:03.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:03.301][ef$get] Asked field names are: formula.
biodb.TRACE[2025-09-20 16:02:03.303][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-20 16:02:03.304][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:03.305][ef$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:03.306][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-09-20 16:02:03.308][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-20 16:02:03.309][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:03.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:03.326][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-09-20 16:02:03.327][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-20 16:02:03.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:03.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:03.331][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-20 16:02:03.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-20 16:02:03.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:03.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:03.336][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-20 16:02:03.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-20 16:02:03.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:03.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:03.341][ef$get] Asked field names are: mass.
biodb.TRACE[2025-09-20 16:02:03.342][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-20 16:02:03.343][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:03.344][ef$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:03.346][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-09-20 16:02:03.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-20 16:02:03.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:03.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:03.360][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-20 16:02:03.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-20 16:02:03.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:03.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:03.365][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-20 16:02:03.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-20 16:02:03.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:03.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:03.370][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-20 16:02:03.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-20 16:02:03.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:03.374][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:03.375][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-20 16:02:03.376][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-20 16:02:03.377][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:03.378][ef$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:03.380][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-20 16:02:03.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-20 16:02:03.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:03.383][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:03.394][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-20 16:02:03.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-20 16:02:03.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:03.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:03.399][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-20 16:02:03.400][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-20 16:02:03.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:03.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:03.404][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-20 16:02:03.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-20 16:02:03.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:03.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:03.409][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-20 16:02:03.410][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-20 16:02:03.411][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:03.412][ef$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:03.414][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-20 16:02:03.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-20 16:02:03.416][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:03.417][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:03.428][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-09-20 16:02:03.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-09-20 16:02:03.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:03.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:03.433][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-09-20 16:02:03.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-09-20 16:02:03.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:03.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:03.438][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-09-20 16:02:03.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-09-20 16:02:03.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:03.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:03.443][ef$get] Asked field names are: charge.
biodb.TRACE[2025-09-20 16:02:03.444][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-09-20 16:02:03.445][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:03.446][ef$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:03.447][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-09-20 16:02:03.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-09-20 16:02:03.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:03.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:03.462][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-09-20 16:02:03.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-09-20 16:02:03.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:03.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:03.467][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-09-20 16:02:03.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-09-20 16:02:03.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:03.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:03.472][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-09-20 16:02:03.473][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-09-20 16:02:03.474][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:03.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:03.476][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-09-20 16:02:03.478][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-09-20 16:02:03.479][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:03.480][ef$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:03.481][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-09-20 16:02:03.483][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-09-20 16:02:03.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:03.485][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:03.501][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-09-20 16:02:03.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-09-20 16:02:03.503][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:03.504][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:03.506][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-09-20 16:02:03.507][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-09-20 16:02:03.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:03.509][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:03.510][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-09-20 16:02:03.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-09-20 16:02:03.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:03.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:03.515][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-09-20 16:02:03.517][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-09-20 16:02:03.518][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:03.519][ef$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:03.520][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-09-20 16:02:03.521][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-09-20 16:02:03.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:03.524][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:03.535][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-09-20 16:02:03.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-20 16:02:03.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:03.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:03.540][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-09-20 16:02:03.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-20 16:02:03.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:03.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:03.545][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-09-20 16:02:03.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-20 16:02:03.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:03.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:03.550][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-09-20 16:02:03.551][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-20 16:02:03.552][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:03.553][ef$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:03.555][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-09-20 16:02:03.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-20 16:02:03.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:03.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:03.570][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-20 16:02:03.571][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-20 16:02:03.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:03.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:03.575][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-20 16:02:03.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-20 16:02:03.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:03.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:03.580][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-20 16:02:03.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-20 16:02:03.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:03.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:03.585][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-20 16:02:03.587][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-20 16:02:03.588][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:03.589][ef$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:03.590][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-20 16:02:03.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-20 16:02:03.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:03.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:03.605][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-09-20 16:02:03.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-20 16:02:03.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:03.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:03.610][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-09-20 16:02:03.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-20 16:02:03.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:03.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:03.615][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-09-20 16:02:03.616][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-20 16:02:03.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:03.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:03.620][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-09-20 16:02:03.622][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-20 16:02:03.623][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:03.624][ef$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:03.625][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-09-20 16:02:03.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-20 16:02:03.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:03.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:03.640][ef$get] Asked field names are: accession.
biodb.TRACE[2025-09-20 16:02:03.641][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-20 16:02:03.643][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:03.644][ef$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:03.650][ef$get] Asked field names are: charge.
biodb.TRACE[2025-09-20 16:02:03.651][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-09-20 16:02:03.652][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:03.654][ef$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:03.660][ef$get] Asked field names are: formula.
biodb.TRACE[2025-09-20 16:02:03.661][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-20 16:02:03.662][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:03.664][ef$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:03.670][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-09-20 16:02:03.671][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-20 16:02:03.672][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:03.673][ef$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:03.679][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-20 16:02:03.681][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-20 16:02:03.687][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:03.688][ef$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:03.694][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-09-20 16:02:03.695][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-09-20 16:02:03.696][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:03.697][ef$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:03.704][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-20 16:02:03.705][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-20 16:02:03.706][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:03.707][ef$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:03.713][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-20 16:02:03.715][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-20 16:02:03.716][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:03.717][ef$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:03.724][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-09-20 16:02:03.725][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-09-20 16:02:03.727][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:03.728][ef$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:03.734][ef$get] Asked field names are: name.
biodb.TRACE[2025-09-20 16:02:03.736][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-09-20 16:02:03.737][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:03.738][ef$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:03.744][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-09-20 16:02:03.746][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-20 16:02:03.747][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:03.748][ef$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:03.755][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/bbs-3.21-bioc-longtests/meat/biodbChebi.Rcheck/biodbChebi/testref/entry-chebi-7799-content.xml".
biodb.DEBUG[2025-09-20 16:02:03.757][biodb$getFactory()$createEntryFromCo ...] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-09-20 16:02:03.758][biodb$getFactory()$createEntryFromCo ...] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-09-20 16:02:03.760][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-20 16:02:03.761][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-20 16:02:03.763][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-20 16:02:03.769][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-20 16:02:03.770][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-20 16:02:03.771][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-20 16:02:03.772][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-20 16:02:03.775][ef$get] Asked field names are: accession.
biodb.TRACE[2025-09-20 16:02:03.777][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-20 16:02:03.778][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:03.779][ef$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:03.781][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-20 16:02:03.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-20 16:02:03.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:03.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:03.786][ef$get] Asked field names are: charge.
biodb.TRACE[2025-09-20 16:02:03.788][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-09-20 16:02:03.789][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:03.790][ef$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:03.792][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-09-20 16:02:03.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-09-20 16:02:03.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:03.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:03.797][ef$get] Asked field names are: formula.
biodb.TRACE[2025-09-20 16:02:03.798][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-20 16:02:03.799][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:03.801][ef$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:03.802][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-09-20 16:02:03.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-20 16:02:03.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:03.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:03.807][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-09-20 16:02:03.809][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-20 16:02:03.810][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:03.811][ef$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:03.813][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-09-20 16:02:03.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-20 16:02:03.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:03.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:03.818][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-20 16:02:03.819][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-20 16:02:03.820][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:03.821][ef$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:03.823][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-20 16:02:03.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-20 16:02:03.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:03.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:03.828][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-09-20 16:02:03.830][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-09-20 16:02:03.831][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:03.832][ef$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:03.833][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-09-20 16:02:03.835][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-09-20 16:02:03.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:03.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:03.839][ef$get] Asked field names are: mass.
biodb.TRACE[2025-09-20 16:02:03.840][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-20 16:02:03.841][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:03.843][ef$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:03.844][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-09-20 16:02:03.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-20 16:02:03.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:03.848][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:03.849][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-20 16:02:03.851][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-20 16:02:03.852][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:03.853][ef$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:03.855][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-20 16:02:03.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-20 16:02:03.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:03.859][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:03.860][ef$get] Asked field names are: name.
biodb.TRACE[2025-09-20 16:02:03.861][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-09-20 16:02:03.863][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:03.864][ef$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:03.866][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-20 16:02:03.867][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-20 16:02:03.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:03.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:03.871][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-09-20 16:02:03.873][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-09-20 16:02:03.874][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:03.880][ef$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:03.882][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-09-20 16:02:03.883][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-09-20 16:02:03.884][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:03.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:03.887][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-09-20 16:02:03.888][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-20 16:02:03.890][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:03.891][ef$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:03.892][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-09-20 16:02:03.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-20 16:02:03.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:03.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:03.898][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-20 16:02:03.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-20 16:02:03.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:03.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:03.903][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-20 16:02:03.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-20 16:02:03.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:03.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:03.908][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-20 16:02:03.910][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-20 16:02:03.911][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:03.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:03.913][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-20 16:02:03.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-20 16:02:03.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:03.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:03.919][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-20 16:02:03.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-20 16:02:03.922][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:03.923][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:03.924][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-20 16:02:03.926][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-20 16:02:03.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:03.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:03.929][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-20 16:02:03.931][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-20 16:02:03.932][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:03.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:03.935][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-20 16:02:03.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-20 16:02:03.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:03.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:03.940][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-20 16:02:03.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-20 16:02:03.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:03.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:03.945][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-20 16:02:03.946][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-20 16:02:03.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:03.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-20 16:02:03.951][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 7799.
biodb.TRACE[2025-09-20 16:02:03.953][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-09-20 16:02:03.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-20 16:02:03.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:03.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:03.959][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-09-20 16:02:03.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-20 16:02:03.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:03.963][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:03.964][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-20 16:02:03.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-20 16:02:03.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:03.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:03.969][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-20 16:02:03.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-20 16:02:03.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:03.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:03.974][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-20 16:02:03.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-20 16:02:03.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:03.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:03.980][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-20 16:02:03.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-20 16:02:03.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:03.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:03.985][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-09-20 16:02:03.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-09-20 16:02:03.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:03.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:03.990][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-09-20 16:02:03.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-09-20 16:02:03.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:03.994][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:03.995][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2025-09-20 16:02:03.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-09-20 16:02:03.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:03.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:04.000][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-09-20 16:02:04.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-09-20 16:02:04.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:04.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:04.007][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-20 16:02:04.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-20 16:02:04.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:04.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:04.017][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-20 16:02:04.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-20 16:02:04.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:04.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:04.028][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-20 16:02:04.030][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-20 16:02:04.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:04.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:04.034][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-20 16:02:04.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-20 16:02:04.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:04.037][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:04.039][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-20 16:02:04.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-20 16:02:04.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:04.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:04.046][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-20 16:02:04.048][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-20 16:02:04.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:04.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:04.052][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-20 16:02:04.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-20 16:02:04.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:04.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:04.057][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-20 16:02:04.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-20 16:02:04.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:04.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:04.063][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-20 16:02:04.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-20 16:02:04.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:04.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:04.073][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-20 16:02:04.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-20 16:02:04.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:04.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:04.078][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-20 16:02:04.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-20 16:02:04.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:04.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:04.092][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-20 16:02:04.093][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-20 16:02:04.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:04.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:04.097][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-20 16:02:04.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-20 16:02:04.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:04.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:04.103][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-20 16:02:04.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-20 16:02:04.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:04.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:04.109][ef$get] Asked field names are: accession.
biodb.TRACE[2025-09-20 16:02:04.111][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-20 16:02:04.112][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:04.113][ef$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:04.115][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-20 16:02:04.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-20 16:02:04.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:04.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:04.131][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-09-20 16:02:04.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-20 16:02:04.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:04.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:04.136][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-09-20 16:02:04.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-20 16:02:04.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:04.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:04.142][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-09-20 16:02:04.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-20 16:02:04.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:04.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:04.147][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-09-20 16:02:04.149][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-20 16:02:04.150][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:04.151][ef$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:04.152][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-09-20 16:02:04.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-20 16:02:04.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:04.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:04.168][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-09-20 16:02:04.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-20 16:02:04.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:04.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:04.174][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-09-20 16:02:04.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-20 16:02:04.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:04.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:04.179][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-09-20 16:02:04.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-20 16:02:04.182][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:04.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:04.185][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-09-20 16:02:04.186][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-20 16:02:04.187][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:04.189][ef$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:04.190][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-09-20 16:02:04.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-20 16:02:04.193][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:04.194][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:04.206][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-20 16:02:04.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-20 16:02:04.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:04.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:04.211][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-20 16:02:04.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-20 16:02:04.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:04.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:04.216][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-20 16:02:04.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-20 16:02:04.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:04.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:04.221][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-20 16:02:04.222][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-20 16:02:04.224][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:04.225][ef$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:04.226][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-20 16:02:04.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-20 16:02:04.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:04.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:04.242][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-09-20 16:02:04.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-09-20 16:02:04.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:04.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:04.247][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-09-20 16:02:04.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-09-20 16:02:04.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:04.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:04.252][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-09-20 16:02:04.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-09-20 16:02:04.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:04.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:04.258][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-09-20 16:02:04.259][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-09-20 16:02:04.260][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:04.261][ef$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:04.263][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-09-20 16:02:04.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-09-20 16:02:04.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:04.271][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:04.282][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-20 16:02:04.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-20 16:02:04.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:04.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:04.287][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-20 16:02:04.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-20 16:02:04.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:04.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:04.293][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-20 16:02:04.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-20 16:02:04.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:04.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:04.298][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-20 16:02:04.299][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-20 16:02:04.300][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:04.302][ef$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:04.303][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-20 16:02:04.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-20 16:02:04.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:04.307][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:04.318][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-20 16:02:04.320][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-20 16:02:04.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:04.322][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:04.324][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-20 16:02:04.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-20 16:02:04.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:04.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:04.329][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-20 16:02:04.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-20 16:02:04.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:04.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:04.334][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-20 16:02:04.335][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-20 16:02:04.337][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:04.338][ef$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:04.339][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-20 16:02:04.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-20 16:02:04.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:04.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:04.354][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-09-20 16:02:04.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-09-20 16:02:04.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:04.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:04.359][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-09-20 16:02:04.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-09-20 16:02:04.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:04.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:04.365][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-09-20 16:02:04.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-09-20 16:02:04.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:04.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:04.370][ef$get] Asked field names are: charge.
biodb.TRACE[2025-09-20 16:02:04.371][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-09-20 16:02:04.372][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:04.374][ef$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:04.375][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-09-20 16:02:04.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-09-20 16:02:04.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:04.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:04.390][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-09-20 16:02:04.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-09-20 16:02:04.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:04.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:04.395][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-09-20 16:02:04.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-09-20 16:02:04.398][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:04.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:04.400][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-09-20 16:02:04.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-09-20 16:02:04.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:04.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:04.405][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-09-20 16:02:04.406][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-09-20 16:02:04.408][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:04.409][ef$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:04.410][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-09-20 16:02:04.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-09-20 16:02:04.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:04.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:04.425][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-20 16:02:04.427][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-20 16:02:04.428][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:04.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:04.431][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-20 16:02:04.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-20 16:02:04.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:04.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:04.436][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-20 16:02:04.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-20 16:02:04.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:04.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:04.441][ef$get] Asked field names are: name.
biodb.TRACE[2025-09-20 16:02:04.442][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-09-20 16:02:04.443][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:04.444][ef$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:04.446][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-20 16:02:04.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-20 16:02:04.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:04.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:04.465][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-09-20 16:02:04.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-20 16:02:04.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:04.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:04.470][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-09-20 16:02:04.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-20 16:02:04.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:04.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:04.475][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-09-20 16:02:04.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-20 16:02:04.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:04.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:04.480][ef$get] Asked field names are: formula.
biodb.TRACE[2025-09-20 16:02:04.481][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-20 16:02:04.482][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:04.484][ef$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:04.485][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-09-20 16:02:04.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-20 16:02:04.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:04.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:04.500][ef$get] Asked field names are: accession.
biodb.TRACE[2025-09-20 16:02:04.501][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-20 16:02:04.503][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:04.504][ef$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:04.510][ef$get] Asked field names are: charge.
biodb.TRACE[2025-09-20 16:02:04.511][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-09-20 16:02:04.513][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:04.514][ef$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:04.520][ef$get] Asked field names are: formula.
biodb.TRACE[2025-09-20 16:02:04.521][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-20 16:02:04.523][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:04.524][ef$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:04.530][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-09-20 16:02:04.532][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-20 16:02:04.533][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:04.534][ef$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:04.540][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-20 16:02:04.542][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-20 16:02:04.543][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:04.544][ef$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:04.550][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-09-20 16:02:04.552][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-09-20 16:02:04.553][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:04.554][ef$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:04.560][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-20 16:02:04.562][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-20 16:02:04.563][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:04.564][ef$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:04.571][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-20 16:02:04.572][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-20 16:02:04.573][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:04.574][ef$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:04.580][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-09-20 16:02:04.582][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-09-20 16:02:04.583][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:04.584][ef$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:04.591][ef$get] Asked field names are: name.
biodb.TRACE[2025-09-20 16:02:04.592][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-09-20 16:02:04.593][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:04.594][ef$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:04.600][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-09-20 16:02:04.602][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-20 16:02:04.603][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:04.604][ef$get] fields variable is a list.
biodb.INFO [2025-09-20 16:02:04.615][biodb::testThat]
biodb.INFO [2025-09-20 16:02:04.616][biodb::testThat] Running test function  test.rt.unit  (" RT unit is defined when there is an RT value. ").
biodb.INFO [2025-09-20 16:02:04.617][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-09-20 16:02:04.618][biodb::testThat]
biodb.DEBUG[2025-09-20 16:02:04.621][private$loadEntries] Creating entries from ids [3]: "15440, 2528, 7799".
biodb.DEBUG[2025-09-20 16:02:04.628][conn$getEntryContent] Get ChEBI entry content(s) for 3 id(s)...
biodb.TRACE[2025-09-20 16:02:04.635][cch$loadFileContent] Trying to load 3 files from cache: [3]: "15440, 2528, 7799".
biodb.TRACE[2025-09-20 16:02:04.638][cch$loadFileContent] file.exist = [3]: "TRUE, TRUE, TRUE".
biodb.TRACE[2025-09-20 16:02:04.641][loadFileContents] Loaded 3 files from cache: [3]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/15440.xml, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/2528.xml, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7799.xml".
biodb.DEBUG[2025-09-20 16:02:04.642][conn$getEntryContent] 3 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-09-20 16:02:04.644][self$createEntryFromContent] Creating ChEBI entries from 3 content(s).
biodb.DEBUG[2025-09-20 16:02:04.645][self$createEntryFromContent] Parsing 3 ChEBI entries.
biodb.DEBUG[2025-09-20 16:02:04.647][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-20 16:02:04.649][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-20 16:02:04.650][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-20 16:02:04.661][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-20 16:02:04.663][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-20 16:02:04.664][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-20 16:02:04.665][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-20 16:02:04.667][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-20 16:02:04.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-20 16:02:04.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:04.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:04.672][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-20 16:02:04.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-20 16:02:04.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:04.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:04.677][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-20 16:02:04.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-20 16:02:04.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:04.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-20 16:02:04.682][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-20 16:02:04.683][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-20 16:02:04.684][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-20 16:02:04.690][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-20 16:02:04.691][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-20 16:02:04.693][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-20 16:02:04.694][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-20 16:02:04.696][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-20 16:02:04.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-20 16:02:04.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:04.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:04.701][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-20 16:02:04.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-20 16:02:04.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:04.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:04.706][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-20 16:02:04.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-20 16:02:04.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:04.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-20 16:02:04.711][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-20 16:02:04.712][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-20 16:02:04.713][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-20 16:02:04.720][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-20 16:02:04.721][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-20 16:02:04.722][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-20 16:02:04.723][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-20 16:02:04.725][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-20 16:02:04.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-20 16:02:04.728][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:04.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:04.730][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-20 16:02:04.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-20 16:02:04.733][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:04.734][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:04.735][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-20 16:02:04.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-20 16:02:04.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:04.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:04.741][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-20 16:02:04.742][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-20 16:02:04.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:04.744][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:04.746][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-20 16:02:04.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-20 16:02:04.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:04.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:04.751][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-20 16:02:04.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-20 16:02:04.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:04.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:04.756][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-20 16:02:04.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-20 16:02:04.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:04.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:04.761][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-20 16:02:04.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-20 16:02:04.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:04.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:04.766][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-20 16:02:04.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-20 16:02:04.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:04.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:04.772][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-20 16:02:04.773][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-20 16:02:04.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:04.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:04.777][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-20 16:02:04.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-20 16:02:04.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:04.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:04.782][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-20 16:02:04.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-20 16:02:04.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:04.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:04.787][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-20 16:02:04.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-20 16:02:04.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:04.791][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:04.792][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-20 16:02:04.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-20 16:02:04.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:04.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:04.797][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-20 16:02:04.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-20 16:02:04.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:04.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:04.803][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-20 16:02:04.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-20 16:02:04.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:04.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:04.808][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-20 16:02:04.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-20 16:02:04.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:04.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:04.813][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-20 16:02:04.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-20 16:02:04.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:04.817][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-20 16:02:04.818][self$createEntryFromContent] Accession numbers: NA, NA, NA.
biodb.DEBUG[2025-09-20 16:02:04.819][self$createEntryFromContent] Found 3 entry/ies without an accession number. Set it/them to NULL.
biodb.INFO [2025-09-20 16:02:04.845][biodb::testThat]
biodb.INFO [2025-09-20 16:02:04.846][biodb::testThat] Running test function  test.searchForEntries  (" We can search for an entry by searchable field ").
biodb.INFO [2025-09-20 16:02:04.847][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-09-20 16:02:04.849][biodb::testThat]
biodb.TRACE[2025-09-20 16:02:04.852][ef$get] Asked field names are: name.
biodb.TRACE[2025-09-20 16:02:04.853][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-09-20 16:02:04.855][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:04.856][ef$get] fields variable is a list.
biodb.DEBUG[2025-09-20 16:02:04.857][function(conn, opt)] Testing searchForEntries() with entry "15440" and field "name".
biodb.INFO [2025-09-20 16:02:05.074][biodb::testThat]
biodb.INFO [2025-09-20 16:02:05.075][biodb::testThat] Running test function  test.searchByName  (" We can search for an entry by name. ").
biodb.INFO [2025-09-20 16:02:05.077][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-09-20 16:02:05.078][biodb::testThat]
biodb.INFO [2025-09-20 16:02:05.128][biodb::testThat]
biodb.INFO [2025-09-20 16:02:05.129][biodb::testThat] Running test function  testEntryLoading  (" We can load an entry from the database. ").
biodb.INFO [2025-09-20 16:02:05.130][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-09-20 16:02:05.131][biodb::testThat]
biodb.INFO [2025-09-20 16:02:05.184][biodb::testThat]
biodb.INFO [2025-09-20 16:02:05.185][biodb::testThat] Running test function  test.entry.page.url  (" We can get a URL pointing to the entry page. ").
biodb.INFO [2025-09-20 16:02:05.186][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-09-20 16:02:05.187][biodb::testThat]
biodb.INFO [2025-09-20 16:02:05.199][biodb::testThat]
biodb.INFO [2025-09-20 16:02:05.200][biodb::testThat] Running test function  test.entry.image.url  (" We can get a URL pointing to the entry image. ").
biodb.INFO [2025-09-20 16:02:05.201][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-09-20 16:02:05.202][biodb::testThat]
biodb.INFO [2025-09-20 16:02:05.215][biodb::testThat]
biodb.INFO [2025-09-20 16:02:05.216][biodb::testThat] Running test function  test.entry.page.url.download  (" The entry page URL can be downloaded. ").
biodb.INFO [2025-09-20 16:02:05.218][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-09-20 16:02:05.219][biodb::testThat]
biodb.DEBUG[2025-09-20 16:02:05.224][function(conn, opt)] Trying to download "https://www.ebi.ac.uk/chebi/searchId.do?chebiId=15440".
biodb.DEBUG[2025-09-20 16:02:11.970][getUrlContent] Use base::url() for downloading content of URL https://www.ebi.ac.uk/chebi/searchId.do?chebiId=15440.
biodb.INFO [2025-09-20 16:02:12.442][biodb::testThat]
biodb.INFO [2025-09-20 16:02:12.444][biodb::testThat] Running test function  test.entry.image.url.download  (" The entry image URL can be downloaded. ").
biodb.INFO [2025-09-20 16:02:12.445][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-09-20 16:02:12.446][biodb::testThat]
biodb.DEBUG[2025-09-20 16:02:12.817][getUrlContent] Use base::url() for downloading content of URL https://www.ebi.ac.uk/chebi/displayImage.do?defaultImage=true&imageIndex=0&chebiId=15440&dimensions=400.
biodb.TRACE[2025-09-20 16:02:13.364][ef$get] Asked field names are: name.
biodb.TRACE[2025-09-20 16:02:13.366][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-09-20 16:02:13.367][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:13.368][ef$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:13.369][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-20 16:02:13.370][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-20 16:02:13.372][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:13.373][ef$get] fields variable is a list.
biodb.INFO [2025-09-20 16:02:13.375][biodb::testThat]
biodb.INFO [2025-09-20 16:02:13.376][biodb::testThat] Running test function  test.searchCompound  (" We can search for a compound ").
biodb.INFO [2025-09-20 16:02:13.377][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-09-20 16:02:13.378][biodb::testThat]
biodb.INFO [2025-09-20 16:02:13.426][biodb::testThat]
biodb.INFO [2025-09-20 16:02:13.427][biodb::testThat] Running test function  test_annotateMzValues_input_vector  (" annotateMzValues() accepts a single vector. ").
biodb.INFO [2025-09-20 16:02:13.429][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-09-20 16:02:13.430][biodb::testThat]
biodb.INFO [2025-09-20 16:02:13.449][biodb::testThat]
biodb.INFO [2025-09-20 16:02:13.450][biodb::testThat] Running test function  test_annotateMzValues_ppm_tol  (" ppm tolerance works in annotateMzValues() ").
biodb.INFO [2025-09-20 16:02:13.451][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-09-20 16:02:13.452][biodb::testThat]
biodb.INFO [2025-09-20 16:02:13.471][biodb::testThat]
biodb.INFO [2025-09-20 16:02:13.473][biodb::testThat] Running test function  test_annotateMzValues_input_dataframe_untouched  (" Input data frame is not modified by annotateMzValues() ").
biodb.INFO [2025-09-20 16:02:13.474][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-09-20 16:02:13.475][biodb::testThat]
biodb.TRACE[2025-09-20 16:02:13.496][ef$get] Asked field names are: name.
biodb.TRACE[2025-09-20 16:02:13.498][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-09-20 16:02:13.500][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:13.501][ef$get] fields variable is a list.
biodb.TRACE[2025-09-20 16:02:13.502][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-20 16:02:13.504][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-20 16:02:13.505][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-20 16:02:13.507][ef$get] fields variable is a list.
biodb.INFO [2025-09-20 16:02:13.509][biodb::testThat]
biodb.INFO [2025-09-20 16:02:13.510][biodb::testThat] Running test function  test.annotateMzValues_real_values  (" annotateMzValues() works correctly with real values. ").
biodb.INFO [2025-09-20 16:02:13.511][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-09-20 16:02:13.513][biodb::testThat]
biodb.INFO [2025-09-20 16:02:13.535][biodb::testThat]
biodb.INFO [2025-09-20 16:02:13.536][biodb::testThat] Running test function  test_annotateMzValues_additional_fields  (" Additional fields are accepted in annotateMzValues() ").
biodb.INFO [2025-09-20 16:02:13.538][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-09-20 16:02:13.539][biodb::testThat]
biodb.INFO [2025-09-20 16:02:13.561][biodb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2025-09-20 16:02:13.562][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector chebi from the request scheduler
biodb.INFO [2025-09-20 16:02:13.564][self$deleteConn] Connector "chebi" deleted.
biodb.DEBUG[2025-09-20 16:02:13.565][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2025-09-20 16:02:13.567][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-20 16:02:13.568][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-20 16:02:13.569][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-20 16:02:13.570][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-20 16:02:13.572][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2025-09-20 16:02:13.573][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
[ FAIL 17 | WARN 0 | SKIP 0 | PASS 215 ]

══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test_long_100_generic.R:17:1'): RT unit is defined when there is an RT value. ──
Error in `eval_bare(expr, quo_get_env(quo))`: attempt to apply non-function
Backtrace:
    ▆
 1. ├─base::do.call(fct, params)
 2. └─biodb (local) `<fn>`(conn = `<ChebiCnn>`, opt = `<named list>`)
 3.   └─testthat::expect_true(...)
 4.     └─testthat::quasi_label(enquo(object), label, arg = "object")
 5.       └─rlang::eval_bare(expr, quo_get_env(quo))
── Failure ('test_long_100_generic.R:17:1'): We can search for an entry by searchable field ──
!is.null(entry) is not TRUE

`actual`:   FALSE
`expected`: TRUE 
Backtrace:
    ▆
 1. ├─base::do.call(fct, params)
 2. └─biodb (local) `<fn>`(conn = `<ChebiCnn>`, opt = `<named list>`)
 3.   └─testthat::expect_true(!is.null(entry))
── Error ('test_long_100_generic.R:17:1'): We can search for an entry by searchable field ──
Error in `entry$getFieldValue(f)`: attempt to apply non-function
Backtrace:
    ▆
 1. ├─base::do.call(fct, params)
 2. └─biodb (local) `<fn>`(conn = `<ChebiCnn>`, opt = `<named list>`)
── Failure ('test_long_100_generic.R:17:1'): We can search for an entry by name. ──
!is.null(entry) is not TRUE

`actual`:   FALSE
`expected`: TRUE 
Backtrace:
    ▆
 1. ├─base::do.call(fct, params)
 2. └─biodb (local) `<fn>`(conn = `<ChebiCnn>`, opt = `<named list>`)
 3.   └─testthat::expect_true(!is.null(entry))
── Error ('test_long_100_generic.R:17:1'): We can search for an entry by name. ──
Error in `entry$getFieldValue("name")`: attempt to apply non-function
Backtrace:
    ▆
 1. ├─base::do.call(fct, params)
 2. └─biodb (local) `<fn>`(conn = `<ChebiCnn>`, opt = `<named list>`)
── Failure ('test_long_100_generic.R:17:1'): We can load an entry from the database. ──
any(vapply(entries, is.null, FUN.VALUE = TRUE)) is not FALSE

`actual`:   TRUE 
`expected`: FALSE
Backtrace:
    ▆
 1. ├─base::do.call(fct, params)
 2. └─biodb (local) `<fn>`(conn = `<ChebiCnn>`, opt = `<named list>`)
 3.   └─opt$refEntries$getRealEntry(id)
 4.     └─self$getRealEntries(ids = id)
 5.       └─testthat::expect_false(any(vapply(entries, is.null, FUN.VALUE = TRUE)))
── Failure ('test_long_100_generic.R:17:1'): We can load an entry from the database. ──
`e` inherits from `'NULL'` not `'character'`.
Backtrace:
    ▆
 1. ├─base::do.call(fct, params)
 2. └─biodb (local) `<fn>`(conn = `<ChebiCnn>`, opt = `<named list>`)
 3.   └─testthat::expect_is(e, "BiodbEntry")
── Failure ('test_long_100_generic.R:17:1'): The entry page URL can be downloaded. ──
!is.na(content) is not TRUE

`actual`:       
`expected`: TRUE
Backtrace:
    ▆
 1. ├─base::do.call(fct, params)
 2. └─biodb (local) `<fn>`(conn = `<ChebiCnn>`, opt = `<named list>`)
 3.   └─testthat::expect_true(!is.na(content))
── Failure ('test_long_100_generic.R:17:1'): The entry page URL can be downloaded. ──
nchar(content) > 0 is not TRUE

`actual`:       
`expected`: TRUE
Backtrace:
    ▆
 1. ├─base::do.call(fct, params)
 2. └─biodb (local) `<fn>`(conn = `<ChebiCnn>`, opt = `<named list>`)
 3.   └─testthat::expect_true(nchar(content) > 0)
── Error ('test_long_100_generic.R:17:1'): The entry image URL can be downloaded. ──
Error in `charToRaw(content)`: argument must be a character vector of length 1
Backtrace:
    ▆
 1. ├─base::do.call(fct, params)
 2. └─biodb (local) `<fn>`(conn = `<ChebiCnn>`, opt = `<named list>`)
 3.   └─biodb:::getUrlContent(url, binary = TRUE)
 4.     └─biodb:::getBaseUrlContent(u, binary = binary)
 5.       └─base::charToRaw(content)
── Failure ('test_long_100_generic.R:17:1'): We can search for a compound ──────
!is.null(entry) is not TRUE

`actual`:   FALSE
`expected`: TRUE 
Backtrace:
    ▆
 1. ├─base::do.call(fct, params)
 2. └─biodb (local) `<fn>`(db = `<ChebiCnn>`, opt = `<named list>`)
 3.   └─testthat::expect_true(!is.null(entry))
── Error ('test_long_100_generic.R:17:1'): We can search for a compound ────────
Error in `entry$getFieldValue("name")`: attempt to apply non-function
Backtrace:
    ▆
 1. ├─base::do.call(fct, params)
 2. └─biodb (local) `<fn>`(db = `<ChebiCnn>`, opt = `<named list>`)
── Error ('test_long_100_generic.R:17:1'): annotateMzValues() accepts a single vector. ──
Error in `e$hasField(mf)`: attempt to apply non-function
Backtrace:
    ▆
 1. ├─base::do.call(fct, params)
 2. └─biodb (local) `<fn>`(conn = `<ChebiCnn>`, opt = `<named list>`)
 3.   └─base::vapply(entries, function(e) e$hasField(mf), FUN.VALUE = TRUE)
 4.     └─biodb (local) FUN(X[[i]], ...)
── Error ('test_long_100_generic.R:17:1'): ppm tolerance works in annotateMzValues() ──
Error in `e$hasField(mf)`: attempt to apply non-function
Backtrace:
    ▆
 1. ├─base::do.call(fct, params)
 2. └─biodb (local) `<fn>`(conn = `<ChebiCnn>`, opt = `<named list>`)
 3.   └─base::vapply(entries, function(e) e$hasField(mf), FUN.VALUE = TRUE)
 4.     └─biodb (local) FUN(X[[i]], ...)
── Error ('test_long_100_generic.R:17:1'): Input data frame is not modified by annotateMzValues() ──
Error in `e$hasField(mf)`: attempt to apply non-function
Backtrace:
    ▆
 1. ├─base::do.call(fct, params)
 2. └─biodb (local) `<fn>`(conn = `<ChebiCnn>`, opt = `<named list>`)
 3.   └─base::vapply(entries, function(e) e$hasField(mf), FUN.VALUE = TRUE)
 4.     └─biodb (local) FUN(X[[i]], ...)
── Error ('test_long_100_generic.R:17:1'): annotateMzValues() works correctly with real values. ──
Error in `e$hasField(mf)`: attempt to apply non-function
Backtrace:
    ▆
 1. ├─base::do.call(fct, params)
 2. └─biodb (local) `<fn>`(conn = `<ChebiCnn>`, opt = `<named list>`)
 3.   └─base::vapply(entries, function(e) e$hasField(mf), FUN.VALUE = TRUE)
 4.     └─biodb (local) FUN(X[[i]], ...)
── Error ('test_long_100_generic.R:17:1'): Additional fields are accepted in annotateMzValues() ──
Error in `e$hasField(mf)`: attempt to apply non-function
Backtrace:
    ▆
 1. ├─base::do.call(fct, params)
 2. └─biodb (local) `<fn>`(conn = `<ChebiCnn>`, opt = `<named list>`)
 3.   └─base::vapply(entries, function(e) e$hasField(mf), FUN.VALUE = TRUE)
 4.     └─biodb (local) FUN(X[[i]], ...)

[ FAIL 17 | WARN 0 | SKIP 0 | PASS 215 ]
Error: Test failures
Execution halted

'R CMD check' output

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### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD check --test-dir=longtests --no-stop-on-test-error --no-codoc --no-examples --no-manual --ignore-vignettes --check-subdirs=no biodbChebi_1.14.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory ‘/Users/biocbuild/bbs-3.21-bioc-longtests/meat/biodbChebi.Rcheck’
* using R version 4.5.1 RC (2025-06-05 r88288)
* using platform: x86_64-apple-darwin20
* R was compiled by
    Apple clang version 14.0.0 (clang-1400.0.29.202)
    GNU Fortran (GCC) 14.2.0
* running under: macOS Monterey 12.7.6
* using session charset: UTF-8
* using options ‘--no-codoc --no-examples --no-manual --ignore-vignettes --no-stop-on-test-error’
* checking for file ‘biodbChebi/DESCRIPTION’ ... OK
* this is package ‘biodbChebi’ version ‘1.14.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘biodbChebi’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... SKIPPED
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in ‘vignettes’ ... SKIPPED
* checking examples ... SKIPPED
* checking for unstated dependencies in ‘longtests’ ... OK
* checking tests in ‘longtests’ ...
  Running ‘testthat.R’
 ERROR
Running the tests in ‘longtests/testthat.R’ failed.
Last 13 lines of output:
   2. └─biodb (local) `<fn>`(conn = `<ChebiCnn>`, opt = `<named list>`)
   3.   └─base::vapply(entries, function(e) e$hasField(mf), FUN.VALUE = TRUE)
   4.     └─biodb (local) FUN(X[[i]], ...)
  ── Error ('test_long_100_generic.R:17:1'): Additional fields are accepted in annotateMzValues() ──
  Error in `e$hasField(mf)`: attempt to apply non-function
  Backtrace:
      ▆
   1. ├─base::do.call(fct, params)
   2. └─biodb (local) `<fn>`(conn = `<ChebiCnn>`, opt = `<named list>`)
   3.   └─base::vapply(entries, function(e) e$hasField(mf), FUN.VALUE = TRUE)
   4.     └─biodb (local) FUN(X[[i]], ...)
  
  [ FAIL 17 | WARN 0 | SKIP 0 | PASS 215 ]
  Error: Test failures
  Execution halted
* DONE

Status: 1 ERROR
See
  ‘/Users/biocbuild/bbs-3.21-bioc-longtests/meat/biodbChebi.Rcheck/00check.log’
for details.

Installation output

biodbChebi.Rcheck/00install.out

* installing *source* package ‘biodbChebi’ ...
** this is package ‘biodbChebi’ version ‘1.14.0’
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (biodbChebi)