Pierre Neuvial
| Snapshot Date: 2024-10-16 14:00 -0400 (Wed, 16 Oct 2024) |
| git_url: https://git.bioconductor.org/packages/MANOR |
| git_branch: RELEASE_3_19 |
| git_last_commit: f8e829f |
| git_last_commit_date: 2024-04-30 10:14:44 -0400 (Tue, 30 Apr 2024) |
| Back to Multiple platform build/check report for BioC 3.19: simplified long |
|
This page was generated on 2024-10-18 20:39 -0400 (Fri, 18 Oct 2024).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 22.04.3 LTS) | x86_64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4763 |
| palomino7 | Windows Server 2022 Datacenter | x64 | 4.4.1 (2024-06-14 ucrt) -- "Race for Your Life" | 4500 |
| merida1 | macOS 12.7.5 Monterey | x86_64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4530 |
| kjohnson1 | macOS 13.6.6 Ventura | arm64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4480 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 1154/2300 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| MANOR 1.76.0 (landing page) Pierre Neuvial
| nebbiolo1 | Linux (Ubuntu 22.04.3 LTS) / x86_64 | OK | OK | WARNINGS | | ||||||||
| palomino7 | Windows Server 2022 Datacenter / x64 | OK | OK | WARNINGS | OK | | ||||||||
| merida1 | macOS 12.7.5 Monterey / x86_64 | OK | OK | WARNINGS | OK | | ||||||||
| kjohnson1 | macOS 13.6.6 Ventura / arm64 | OK | OK | WARNINGS | OK | | ||||||||
|
To the developers/maintainers of the MANOR package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/MANOR.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: MANOR |
| Version: 1.76.0 |
| Command: rm -rf MANOR.buildbin-libdir && mkdir MANOR.buildbin-libdir && E:\biocbuild\bbs-3.19-bioc\R\bin\R.exe CMD INSTALL --build --library=MANOR.buildbin-libdir MANOR_1.76.0.tar.gz |
| StartedAt: 2024-10-17 08:04:20 -0400 (Thu, 17 Oct 2024) |
| EndedAt: 2024-10-17 08:04:37 -0400 (Thu, 17 Oct 2024) |
| EllapsedTime: 17.6 seconds |
| RetCode: 0 |
| Status: OK |
| PackageFile: MANOR_1.76.0.zip |
| PackageFileSize: 916.7 KiB |
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### Running command:
###
### rm -rf MANOR.buildbin-libdir && mkdir MANOR.buildbin-libdir && E:\biocbuild\bbs-3.19-bioc\R\bin\R.exe CMD INSTALL --build --library=MANOR.buildbin-libdir MANOR_1.76.0.tar.gz
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* installing *source* package 'MANOR' ...
** using staged installation
** libs
using C compiler: 'gcc.exe (GCC) 13.2.0'
gcc -I"E:/biocbuild/bbs-3.19-bioc/R/include" -DNDEBUG -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c Rnem_arg.c -o Rnem_arg.o
gcc -I"E:/biocbuild/bbs-3.19-bioc/R/include" -DNDEBUG -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c Rnem_exe.c -o Rnem_exe.o
gcc -I"E:/biocbuild/bbs-3.19-bioc/R/include" -DNDEBUG -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c exememo.c -o exememo.o
exememo.c: In function 'GenAlloc':
exememo.c:40:53: warning: format '%ld' expects argument of type 'long int', but argument 5 has type 'size_t' {aka 'long long unsigned int'} [-Wformat=]
40 | sprintf(msg, "Fatal: in %s, no memory for %s (%ld elements size %ld)\n",
| ~~^
| |
| long int
| %lld
41 | where, what, nelem, elsize);
| ~~~~~
| |
| size_t {aka long long unsigned int}
exememo.c:40:71: warning: format '%ld' expects argument of type 'long int', but argument 6 has type 'size_t' {aka 'long long unsigned int'} [-Wformat=]
40 | sprintf(msg, "Fatal: in %s, no memory for %s (%ld elements size %ld)\n",
| ~~^
| |
| long int
| %lld
41 | where, what, nelem, elsize);
| ~~~~~~
| |
| size_t {aka long long unsigned int}
exememo.c:40:53: warning: format '%ld' expects argument of type 'long int', but argument 5 has type 'size_t' {aka 'long long unsigned int'} [-Wformat=]
40 | sprintf(msg, "Fatal: in %s, no memory for %s (%ld elements size %ld)\n",
| ~~^
| |
| long int
| %lld
41 | where, what, nelem, elsize);
| ~~~~~
| |
| size_t {aka long long unsigned int}
exememo.c:40:71: warning: format '%ld' expects argument of type 'long int', but argument 6 has type 'size_t' {aka 'long long unsigned int'} [-Wformat=]
40 | sprintf(msg, "Fatal: in %s, no memory for %s (%ld elements size %ld)\n",
| ~~^
| |
| long int
| %lld
41 | where, what, nelem, elsize);
| ~~~~~~
| |
| size_t {aka long long unsigned int}
exememo.c:40:5: warning: 'msg' may be used uninitialized [-Wmaybe-uninitialized]
40 | sprintf(msg, "Fatal: in %s, no memory for %s (%ld elements size %ld)\n",
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
41 | where, what, nelem, elsize);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~
exememo.c:39:11: note: 'msg' was declared here
39 | char* msg;
| ^~~
gcc -I"E:/biocbuild/bbs-3.19-bioc/R/include" -DNDEBUG -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c nem_alg.c -o nem_alg.o
In function 'ClassifyByNemHeuBeta',
inlined from 'ClassifyByNem' at nem_alg.c:578:13:
nem_alg.c:801:7: warning: 'strncpy' output may be truncated copying 100 bytes from a string of length 100 [-Wstringop-truncation]
801 | strncpy( namecri, NemParaP->OutBaseName, LEN_FILENAME ) ;
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
gcc -I"E:/biocbuild/bbs-3.19-bioc/R/include" -DNDEBUG -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c nem_hlp.c -o nem_hlp.o
gcc -I"E:/biocbuild/bbs-3.19-bioc/R/include" -DNDEBUG -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c nem_mod.c -o nem_mod.o
gcc -I"E:/biocbuild/bbs-3.19-bioc/R/include" -DNDEBUG -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c nem_nei.c -o nem_nei.o
gcc -I"E:/biocbuild/bbs-3.19-bioc/R/include" -DNDEBUG -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c nem_rnd.c -o nem_rnd.o
gcc -I"E:/biocbuild/bbs-3.19-bioc/R/include" -DNDEBUG -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c nem_ver.c -o nem_ver.o
gcc -I"E:/biocbuild/bbs-3.19-bioc/R/include" -DNDEBUG -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c registerDynamicSymbols.c -o registerDynamicSymbols.o
gcc -shared -s -static-libgcc -o MANOR.dll tmp.def Rnem_arg.o Rnem_exe.o exememo.o nem_alg.o nem_hlp.o nem_mod.o nem_nei.o nem_rnd.o nem_ver.o registerDynamicSymbols.o -LC:/rtools44/x86_64-w64-mingw32.static.posix/lib/x64 -LC:/rtools44/x86_64-w64-mingw32.static.posix/lib -LE:/biocbuild/bbs-3.19-bioc/R/bin/x64 -lR
installing to E:/biocbuild/bbs-3.19-bioc/meat/MANOR.buildbin-libdir/00LOCK-MANOR/00new/MANOR/libs/x64
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* MD5 sums
packaged installation of 'MANOR' as MANOR_1.76.0.zip
* DONE (MANOR)